diff options
Diffstat (limited to 'sci-biology/gatk/gatk-2.4.ebuild')
-rw-r--r-- | sci-biology/gatk/gatk-2.4.ebuild | 32 |
1 files changed, 0 insertions, 32 deletions
diff --git a/sci-biology/gatk/gatk-2.4.ebuild b/sci-biology/gatk/gatk-2.4.ebuild deleted file mode 100644 index bab228e77f5f..000000000000 --- a/sci-biology/gatk/gatk-2.4.ebuild +++ /dev/null @@ -1,32 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -EANT_BUILD_TARGET="dist" -EANT_NEEDS_TOOLS="true" -JAVA_ANT_REWRITE_CLASSPATH="true" - -inherit java-pkg-2 java-ant-2 vcs-snapshot - -DESCRIPTION="The Genome Analysis Toolkit" -HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit" -SRC_URI="https://github.com/broadgsa/gatk/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" - -RDEPEND=">=virtual/jre-1.6" -DEPEND="${RDEPEND}" - -src_prepare() { - java-pkg-2_src_prepare - sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die -} - -src_install() { - java-pkg_dojar dist/*.jar - java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar - java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar -} |