diff options
Diffstat (limited to 'sci-biology/eugene/files/eugene-4.1d-Wformat.patch')
-rw-r--r-- | sci-biology/eugene/files/eugene-4.1d-Wformat.patch | 84 |
1 files changed, 84 insertions, 0 deletions
diff --git a/sci-biology/eugene/files/eugene-4.1d-Wformat.patch b/sci-biology/eugene/files/eugene-4.1d-Wformat.patch new file mode 100644 index 000000000000..ab6d2bd1d2ee --- /dev/null +++ b/sci-biology/eugene/files/eugene-4.1d-Wformat.patch @@ -0,0 +1,84 @@ +Fix -Wformat warnings caused by wrong printf specifiers: +* Sensor.Riken.cc:95:61: warning: format ‘%d’ expects argument of type ‘int’, but +* argument 3 has type ‘std::vector<RAFLgene>::size_type {aka long unsigned int}’ [-Wformat=] +* fprintf(stderr, "%d RAFL EST pairs read, ", RAFLtmp.size()); + +--- a/src/Hits.cc ++++ b/src/Hits.cc +@@ -163,7 +163,7 @@ + if (ThisHit != NULL) + for (int i=0; i<*NumHits-1; i++) ThisHit = ThisHit->Next; + +- while ((read=fscanf(HitFile,"%d %d %d %lf %d %s %d %d %as\n", &deb, &fin, ++ while ((read=fscanf(HitFile,"%d %d %d %lf %d %s %d %d %ss\n", &deb, &fin, + &poids, &evalue, &phase, HitId, &HSPDeb, &HSPFin,HSP)) >= 8) + { + if (HSP) fprintf(stderr, "%s", HSP); +--- a/src/SensorPlugins/Est/Sensor.Est.cc ++++ b/src/SensorPlugins/Est/Sensor.Est.cc +@@ -1353,13 +1353,13 @@ + exit(2); + } + +- fprintf(fp, "vPos %d\n", vPos.size()); ++ fprintf(fp, "vPos %zu\n", vPos.size()); + for (int i=0; i< vPos.size();i++ ) + { + fprintf(fp, "vPos %d\t%d\n",i, vPos[i]); + } + +- fprintf(fp, "vESTMatch %d\n", vESTMatch.size()); ++ fprintf(fp, "vESTMatch %zu\n", vESTMatch.size()); + for (int i=0; i< vESTMatch.size();i++ ) + { + fprintf(fp, "vESTMatch %d\t\n", vESTMatch[i]); +--- a/src/SensorPlugins/Riken/Sensor.Riken.cc ++++ b/src/SensorPlugins/Riken/Sensor.Riken.cc +@@ -92,7 +92,7 @@ + + + +- fprintf(stderr, "%d RAFL EST pairs read, ", RAFLtmp.size()); ++ fprintf(stderr, "%zu RAFL EST pairs read, ", RAFLtmp.size()); + + sort(RAFLtmp.begin(), RAFLtmp.end(), Before); + +@@ -148,7 +148,7 @@ + } + } + +- fprintf(stderr,"resulting %d\n",RAFL.size()); ++ fprintf(stderr,"resulting %zu\n",RAFL.size()); + fflush(stderr); + + // for (RAFLtmpindice=0; RAFLtmpindice< (int)RAFL.size(); RAFLtmpindice++) { +--- a/src/SensorPlugins/SMachine/Sensor.SMachine.cc ++++ b/src/SensorPlugins/SMachine/Sensor.SMachine.cc +@@ -197,7 +197,7 @@ + fclose(fp); + + if (end ==2) { +- fprintf(stderr, "Error in SpliceMachine splice site file %s, line %d\n", name, len); ++ fprintf(stderr, "Error in SpliceMachine splice site file %s, line %zu\n", name, len); + exit(2); + } + } +--- a/src/SoTerms.cc ++++ b/src/SoTerms.cc +@@ -67,14 +67,14 @@ + j++; + if (line[0] == 'i' && line[1] == 'd') + { +- i = sscanf(line, "id: %s", &value); ++ i = sscanf(line, "id: %s", value); + if (i > 0) + { + char soId[60]; + char soName[60]; + strcpy (soId, value ); + fgets (line, MAX_LINE, fp); +- i = sscanf(line, "name: %s", &value); ++ i = sscanf(line, "name: %s", value); + strcpy (soName, value ); + idToName_[to_string(soId)]=to_string(soName); + nameToId_[to_string(soName)]=to_string(soId); |