diff options
Diffstat (limited to 'sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch')
| -rw-r--r-- | sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch | 18 |
1 files changed, 18 insertions, 0 deletions
diff --git a/sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch b/sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch new file mode 100644 index 000000000000..bc0f1d09557d --- /dev/null +++ b/sci-biology/bowtie/files/bowtie-1.1.2-tbb-tinythread-missing.patch @@ -0,0 +1,18 @@ +Fixes missing tinythread.cpp when using TBB: + +ebwt_search.cpp:(.text+0x91bb): undefined reference to `tthread::thread::join()' + +--- bowtie-1.1.2/Makefile ++++ bowtie-1.1.2/Makefile +@@ -106,10 +106,7 @@ + endif + + OTHER_CPPS = ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp \ +- edit.cpp ebwt.cpp +-ifneq (1,$(WITH_TBB)) +- OTHER_CPPS += tinythread.cpp +-endif ++ edit.cpp ebwt.cpp tinythread.cpp + + SEARCH_CPPS = qual.cpp pat.cpp ebwt_search_util.cpp ref_aligner.cpp \ + log.cpp hit_set.cpp refmap.cpp annot.cpp sam.cpp \ |