1 files changed, 45 insertions, 0 deletions
diff --git a/sci-biology/bioperl-db/files/bioperl-db-1.6.9-db.patch b/sci-biology/bioperl-db/files/bioperl-db-1.6.9-db.patch
new file mode 100644
index 000000000000..36698651c7d1
--- /dev/null
+++ b/sci-biology/bioperl-db/files/bioperl-db-1.6.9-db.patch
@@ -0,0 +1,45 @@
+From d689a1473977b0aa368590ba1f913521e4f466c7 Mon Sep 17 00:00:00 2001
+From: Kent Fredric <kentfredric@gmail.com>
+Date: Tue, 18 Jul 2017 16:02:26 +1200
+Subject: [PATCH] Allow custom host/port configurations
+
+---
+ Build.PL           | 4 ++--
+ t/DBTestHarness.pm | 4 ++--
+ 2 files changed, 4 insertions(+), 4 deletions(-)
+
+diff --git a/Build.PL b/Build.PL
+index ecc402e..a61190f 100755
+--- a/Build.PL
++++ b/Build.PL
+@@ -97,9 +97,9 @@ sub biosql_conf {
+         or die "Error: could not write to config file '$config_file'\n";
+     
+     my %config = (driver     => $drivers[0],
+-                  host       => '127.0.0.1',
++                  host       => $ENV{GENTOO_DB_HOSTNAME} || '127.0.0.1',
+                   user       => 'root',
+-                  port       => 3306,
++                  port       => $ENV{GENTOO_DB_PORT} || undef,
+                   password   => '',
+                   dbname     => 'bioseqdb',
+                   database   => 'biosql',
+diff --git a/t/DBTestHarness.pm b/t/DBTestHarness.pm
+index b660429..91e0c54 100755
+--- a/t/DBTestHarness.pm
++++ b/t/DBTestHarness.pm
+@@ -47,9 +47,9 @@ my $counter=0;
+ # Default settings as a hash
+ my $dflt = {
+     'driver'        => 'mysql',
+-    'host'          => 'localhost',
++    'host'          => $ENV{GENTOO_DB_HOST} || 'localhost',
+     'user'          => 'root',
+-    'port'          => undef,
++    'port'          => $ENV{GENTOO_DB_PORT} || undef,
+     'password'      => '',
+     'schema_sql'    => ['../biosql-schema/sql/biosqldb-mysql.sql'],
+     'database'      => 'biosql',
+-- 
+2.13.1
+