diff options
Diffstat (limited to 'sci-biology/bfast/files/bfast-0.7.0a-autotools.patch')
| -rw-r--r-- | sci-biology/bfast/files/bfast-0.7.0a-autotools.patch | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/sci-biology/bfast/files/bfast-0.7.0a-autotools.patch b/sci-biology/bfast/files/bfast-0.7.0a-autotools.patch new file mode 100644 index 000000000000..993f6a554662 --- /dev/null +++ b/sci-biology/bfast/files/bfast-0.7.0a-autotools.patch @@ -0,0 +1,41 @@ +--- a/configure.ac ++++ b/configure.ac +@@ -8,7 +8,7 @@ + AC_INIT([bfast],[0.7.0a],[bfast-help@lists.sourceforge.net],[bfast]) + AC_COPYRIGHT([See LICENSE for copyright information.]) + AC_CONFIG_AUX_DIR(config) +-AM_INIT_AUTOMAKE([dist-bzip2 subdir-objects]) ++AM_INIT_AUTOMAKE([dist-bzip2 subdir-objects serial-tests]) + AC_CONFIG_SRCDIR([config.h.in]) + AC_CONFIG_HEADERS([config.h]) + +@@ -21,10 +21,10 @@ + + AC_PROG_INSTALL + AC_GNU_SOURCE ++AC_SYS_LARGEFILE + + # set CFLAGS and CXXFLAGS +-default_CFLAGS="-Wall -g -O2 -pthread"; +-extended_CFLAGS="";# "-m64 -D_FILE_OFFSET_BITS=64"; ++default_CFLAGS="-Wall -pthread" + + # Define some variables + GITREV="Revision: undefined$"; +@@ -42,7 +42,7 @@ + AC_DEFINE(HAVE_LIBBZ2, 1, [Define to 1 if you have the <bzlib.h> header file.])], + AC_MSG_ERROR("could not find the bzlib library. Please use --disable-bzlib if you wish to disable bzlib support."))]) + +-CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"; ++CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"; + + # Enable large file support; disable with --disable-largefile + AC_SYS_LARGEFILE +--- a/Makefile.am ++++ b/Makefile.am +@@ -16,5 +16,4 @@ + + SUBDIRS = bfast butil scripts tests + +-docdir = ${datadir}/doc/${PACKAGE} + dist_doc_DATA = LICENSE manual/bfast-book.pdf |