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Diffstat (limited to 'sci-biology/bcftools/bcftools-1.19.ebuild')
-rw-r--r-- | sci-biology/bcftools/bcftools-1.19.ebuild | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/sci-biology/bcftools/bcftools-1.19.ebuild b/sci-biology/bcftools/bcftools-1.19.ebuild new file mode 100644 index 000000000000..27d474fe35f9 --- /dev/null +++ b/sci-biology/bcftools/bcftools-1.19.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{10..12} ) + +inherit python-single-r1 + +DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" +HOMEPAGE="http://www.htslib.org" +SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND=" + dev-lang/perl + $(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]') + =sci-libs/htslib-$(ver_cut 1-2)*:= + sys-libs/zlib + ${PYTHON_DEPS}" +DEPEND="${RDEPEND}" +BDEPEND="${PYTHON_DEPS}" + +src_prepare() { + default + + python_fix_shebang misc/{gff2gff,guess-ploidy,plot-roh}.py + + # remove bundled htslib + rm -r htslib-* || die +} + +src_configure() { + econf \ + --disable-bcftools-plugins \ + --disable-libgsl \ + --with-htslib=system +} |