diff options
Diffstat (limited to 'sci-biology/abyss/abyss-2.3.4.ebuild')
| -rw-r--r-- | sci-biology/abyss/abyss-2.3.4.ebuild | 10 |
1 files changed, 7 insertions, 3 deletions
diff --git a/sci-biology/abyss/abyss-2.3.4.ebuild b/sci-biology/abyss/abyss-2.3.4.ebuild index c2e1ffd29b32..2c2c14d35bd5 100644 --- a/sci-biology/abyss/abyss-2.3.4.ebuild +++ b/sci-biology/abyss/abyss-2.3.4.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2022 Gentoo Authors +# Copyright 1999-2024 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 -inherit autotools toolchain-funcs +inherit autotools flag-o-matic toolchain-funcs DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" HOMEPAGE="https://www.bcgsc.ca/resources/software/abyss/" @@ -44,11 +44,15 @@ pkg_setup() { src_prepare() { default sed -i -e "s/-Werror//" configure.ac || die #365195 - sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die eautoreconf } src_configure() { + # -Werror=lto-type-mismatch + # https://bugs.gentoo.org/862252 + # https://github.com/bcgsc/abyss/issues/474 + filter-lto + # disable building haskell tool Misc/samtobreak # unless request by user: bug #534412 use misc-haskell || export ac_cv_prog_ac_ct_GHC= |