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-rw-r--r--metadata/md5-cache/sci-chemistry/Manifest.gzbin26829 -> 26341 bytes
-rw-r--r--metadata/md5-cache/sci-chemistry/apbs-1.4.1-r28
-rw-r--r--metadata/md5-cache/sci-chemistry/openbabel-2.3.2-r113
-rw-r--r--metadata/md5-cache/sci-chemistry/openbabel-perl-2.3.212
-rw-r--r--metadata/md5-cache/sci-chemistry/openbabel-python-2.3.214
-rw-r--r--metadata/md5-cache/sci-chemistry/tm-align-201509148
6 files changed, 8 insertions, 47 deletions
diff --git a/metadata/md5-cache/sci-chemistry/Manifest.gz b/metadata/md5-cache/sci-chemistry/Manifest.gz
index d9127ed713fd..27fb0b14303e 100644
--- a/metadata/md5-cache/sci-chemistry/Manifest.gz
+++ b/metadata/md5-cache/sci-chemistry/Manifest.gz
Binary files differ
diff --git a/metadata/md5-cache/sci-chemistry/apbs-1.4.1-r2 b/metadata/md5-cache/sci-chemistry/apbs-1.4.1-r2
index 07aa43fb9592..fbc5fe23c843 100644
--- a/metadata/md5-cache/sci-chemistry/apbs-1.4.1-r2
+++ b/metadata/md5-cache/sci-chemistry/apbs-1.4.1-r2
@@ -1,14 +1,14 @@
DEFINED_PHASES=compile configure install prepare setup test
-DEPEND=virtual/pkgconfig doc? ( app-doc/doxygen ) sys-devel/make >=dev-util/cmake-3.9.6 python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)]
+DEPEND=dev-cpp/eigen:3 dev-libs/maloc[mpi=] sys-libs/readline virtual/blas fetk? ( sci-libs/amd sci-libs/fetk sci-libs/superlu sci-libs/umfpack ) mpi? ( virtual/mpi ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] ) virtual/pkgconfig doc? ( app-doc/doxygen ) sys-devel/make >=dev-util/cmake-3.9.6 python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)]
DESCRIPTION=Evaluation of electrostatic properties of nanoscale biomolecular systems
EAPI=5
-HOMEPAGE=http://www.poissonboltzmann.org/apbs/
+HOMEPAGE=https://www.poissonboltzmann.org/apbs/
IUSE=debug doc examples fast +fetk iapbs mpi openmp python tools python_targets_python2_7
KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux
LICENSE=BSD
-RDEPEND=dev-cpp/eigen:3 dev-libs/maloc[mpi=] virtual/blas sys-libs/readline fetk? ( sci-libs/fetk sci-libs/amd sci-libs/umfpack sci-libs/superlu ) mpi? ( virtual/mpi ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)]
+RDEPEND=dev-cpp/eigen:3 dev-libs/maloc[mpi=] sys-libs/readline virtual/blas fetk? ( sci-libs/amd sci-libs/fetk sci-libs/superlu sci-libs/umfpack ) mpi? ( virtual/mpi ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)]
REQUIRED_USE=iapbs? ( fetk ) mpi? ( !python ) python? ( tools fetk iapbs python_targets_python2_7 ) python_targets_python2_7
SLOT=0
SRC_URI=https://github.com/Electrostatics/apbs-pdb2pqr/archive/74fcb8676de69ed04ddab8976a8b05a6caaf4d65.zip -> apbs-1.4.1.zip
_eclasses_=cmake-utils f0bc1c175684130a76ab6c17f575d820 desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 8595c9c7530ac3963f3aa0d77aa7e2d8 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 55aaa148741116aa54ad0d80e361818e ltprune 08f9e1d9ee0af8f5d9a7854efbcd8c0e multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 93b2dfbb00a09161e1e7f6360c0f7f6b
-_md5_=b04838eb8d0fe55b17589c3ab6d29280
+_md5_=6a96394a927ad8fef2bf8994cd06837c
diff --git a/metadata/md5-cache/sci-chemistry/openbabel-2.3.2-r1 b/metadata/md5-cache/sci-chemistry/openbabel-2.3.2-r1
deleted file mode 100644
index 59ff5e1f7132..000000000000
--- a/metadata/md5-cache/sci-chemistry/openbabel-2.3.2-r1
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile configure install postinst prepare setup test
-DEPEND=dev-cpp/eigen:3 dev-libs/libxml2:2 sci-libs/inchi sys-libs/zlib wxwidgets? ( x11-libs/wxGTK:3.0[X] ) >=dev-util/cmake-2.4.8 doc? ( app-doc/doxygen ) sys-devel/make >=dev-util/cmake-3.9.6
-DESCRIPTION=Interconverts file formats used in molecular modeling
-EAPI=5
-HOMEPAGE=http://openbabel.sourceforge.net/
-IUSE=doc openmp test wxwidgets
-KEYWORDS=amd64 ~arm x86 ~amd64-linux ~x86-linux ~ppc-macos
-LICENSE=GPL-2
-RDEPEND=dev-cpp/eigen:3 dev-libs/libxml2:2 sci-libs/inchi sys-libs/zlib wxwidgets? ( x11-libs/wxGTK:3.0[X] )
-SLOT=0
-SRC_URI=mirror://sourceforge/openbabel/openbabel-2.3.2.tar.gz
-_eclasses_=cmake-utils f0bc1c175684130a76ab6c17f575d820 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 55aaa148741116aa54ad0d80e361818e ltprune 08f9e1d9ee0af8f5d9a7854efbcd8c0e multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wxwidgets ed63935305b6de2210ae97a407719d89 xdg-utils 93b2dfbb00a09161e1e7f6360c0f7f6b
-_md5_=d880844fba044836488350725d6a444f
diff --git a/metadata/md5-cache/sci-chemistry/openbabel-perl-2.3.2 b/metadata/md5-cache/sci-chemistry/openbabel-perl-2.3.2
deleted file mode 100644
index 8e28c1297d72..000000000000
--- a/metadata/md5-cache/sci-chemistry/openbabel-perl-2.3.2
+++ /dev/null
@@ -1,12 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=dev-lang/perl:= ~sci-chemistry/openbabel-2.3.2 >=dev-util/cmake-2.4.8 >=dev-lang/swig-2 sys-devel/make >=dev-util/cmake-3.9.6 dev-lang/perl:=[-build(-)]
-DESCRIPTION=Perl bindings for OpenBabel
-EAPI=5
-HOMEPAGE=http://openbabel.sourceforge.net/
-KEYWORDS=amd64 ~arm x86 ~amd64-linux ~x86-linux
-LICENSE=GPL-2
-RDEPEND=dev-lang/perl:= ~sci-chemistry/openbabel-2.3.2 dev-lang/perl:=[-build(-)]
-SLOT=0
-SRC_URI=mirror://sourceforge/openbabel/openbabel-2.3.2.tar.gz
-_eclasses_=cmake-utils f0bc1c175684130a76ab6c17f575d820 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 55aaa148741116aa54ad0d80e361818e ltprune 08f9e1d9ee0af8f5d9a7854efbcd8c0e multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 0bd80b082268528830da0d72ac571d9a preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 unpacker ee2f5086cd7e7b747b061f58db14d89e vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 93b2dfbb00a09161e1e7f6360c0f7f6b
-_md5_=7d40af4aa49703f526c8935423380ead
diff --git a/metadata/md5-cache/sci-chemistry/openbabel-python-2.3.2 b/metadata/md5-cache/sci-chemistry/openbabel-python-2.3.2
deleted file mode 100644
index c9b818711f70..000000000000
--- a/metadata/md5-cache/sci-chemistry/openbabel-python-2.3.2
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-)] ~sci-chemistry/openbabel-2.3.2 sys-libs/zlib >=dev-lang/swig-2 sys-devel/make >=dev-util/cmake-3.9.6
-DESCRIPTION=Python bindings for OpenBabel (including Pybel)
-EAPI=5
-HOMEPAGE=http://openbabel.sourceforge.net/
-IUSE=python_targets_python2_7 python_targets_python3_4
-KEYWORDS=amd64 ~arm x86 ~amd64-linux ~x86-linux
-LICENSE=GPL-2
-RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-)] ~sci-chemistry/openbabel-2.3.2 sys-libs/zlib
-REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 )
-SLOT=0
-SRC_URI=mirror://sourceforge/openbabel/openbabel-2.3.2.tar.gz
-_eclasses_=cmake-utils f0bc1c175684130a76ab6c17f575d820 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 55aaa148741116aa54ad0d80e361818e ltprune 08f9e1d9ee0af8f5d9a7854efbcd8c0e multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 93b2dfbb00a09161e1e7f6360c0f7f6b
-_md5_=3f5ab0b18673814af37849f1890bfb74
diff --git a/metadata/md5-cache/sci-chemistry/tm-align-20150914 b/metadata/md5-cache/sci-chemistry/tm-align-20150914
index d273814c79e4..cf7429298ae6 100644
--- a/metadata/md5-cache/sci-chemistry/tm-align-20150914
+++ b/metadata/md5-cache/sci-chemistry/tm-align-20150914
@@ -1,13 +1,13 @@
DEFINED_PHASES=compile configure install prepare setup test
DEPEND=sys-devel/make >=dev-util/cmake-3.9.6 virtual/fortran
DESCRIPTION=Quick & Accurate Structural Alignment
-EAPI=5
+EAPI=6
HOMEPAGE=http://zhanglab.ccmb.med.umich.edu/TM-align/
-IUSE=static custom-cflags
-KEYWORDS=~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux
+IUSE=custom-cflags static
+KEYWORDS=~amd64 ppc ppc64 ~x86 ~amd64-linux ~x86-linux
LICENSE=tm-align
RDEPEND=virtual/fortran
SLOT=0
SRC_URI=http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools20150914.tar.gz
_eclasses_=cmake-utils f0bc1c175684130a76ab6c17f575d820 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic 55aaa148741116aa54ad0d80e361818e fortran-2 68fcf50e02640de6eb5698ea038d9537 ltprune 08f9e1d9ee0af8f5d9a7854efbcd8c0e multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs f164325a2cdb5b3ea39311d483988861 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 93b2dfbb00a09161e1e7f6360c0f7f6b
-_md5_=dffd0173b777f1622e966e7bd1838993
+_md5_=0d96f6c5e40e3e66fd57af81a19fe028
generated by cgit v1.2.3 (git 2.25.1) at 2024-08-23 12:26:59 +0000