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-rw-r--r--metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.42
-rw-r--r--metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.52
-rw-r--r--metadata/md5-cache/sci-chemistry/MDAnalysis-2.6.12
-rw-r--r--metadata/md5-cache/sci-chemistry/Manifest.gzbin13176 -> 12831 bytes
-rw-r--r--metadata/md5-cache/sci-chemistry/ParmEd-3.4.32
-rw-r--r--metadata/md5-cache/sci-chemistry/aqua-3.2-r315
-rw-r--r--metadata/md5-cache/sci-chemistry/autodock-4.2.64
-rw-r--r--metadata/md5-cache/sci-chemistry/autodock-4.2.6-r14
-rw-r--r--metadata/md5-cache/sci-chemistry/autodock_vina-1.1.2-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/autodock_vina-1.2.56
-rw-r--r--metadata/md5-cache/sci-chemistry/avogadro2-1.95.12
-rw-r--r--metadata/md5-cache/sci-chemistry/avogadro2-1.97.02
-rw-r--r--metadata/md5-cache/sci-chemistry/chemex-2024.05.2-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/chemex-2024.05.3-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/chemical-mime-data-0.1.94-r44
-rw-r--r--metadata/md5-cache/sci-chemistry/chemical-mime-data-0.1.95_pre201711224
-rw-r--r--metadata/md5-cache/sci-chemistry/chemtool-1.6.144
-rw-r--r--metadata/md5-cache/sci-chemistry/chemtool-1.6.14-r14
-rw-r--r--metadata/md5-cache/sci-chemistry/cluster-1.3.081231-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/cluster-1.3.081231-r22
-rw-r--r--metadata/md5-cache/sci-chemistry/dssp-2.2.1-r32
-rw-r--r--metadata/md5-cache/sci-chemistry/dssp-3.0.114
-rw-r--r--metadata/md5-cache/sci-chemistry/dssp-4.4.4.12
-rw-r--r--metadata/md5-cache/sci-chemistry/dssp-4.4.72
-rw-r--r--metadata/md5-cache/sci-chemistry/easychem-0.6-r22
-rw-r--r--metadata/md5-cache/sci-chemistry/elem-1.0.3-r32
-rw-r--r--metadata/md5-cache/sci-chemistry/gelemental-2.0.0-r14
-rw-r--r--metadata/md5-cache/sci-chemistry/gelemental-2.0.24
-rw-r--r--metadata/md5-cache/sci-chemistry/gnome-chemistry-utils-0.14.17_p6-r24
-rw-r--r--metadata/md5-cache/sci-chemistry/gperiodic-3.0.32
-rw-r--r--metadata/md5-cache/sci-chemistry/gromacs-2020.7-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/gromacs-2021.7-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/gromacs-2022.62
-rw-r--r--metadata/md5-cache/sci-chemistry/gromacs-2023.42
-rw-r--r--metadata/md5-cache/sci-chemistry/gromacs-2023.99992
-rw-r--r--metadata/md5-cache/sci-chemistry/gromacs-20242
-rw-r--r--metadata/md5-cache/sci-chemistry/gromacs-2024.12
-rw-r--r--metadata/md5-cache/sci-chemistry/gromacs-2024.22
-rw-r--r--metadata/md5-cache/sci-chemistry/gromacs-2024.99992
-rw-r--r--metadata/md5-cache/sci-chemistry/gromacs-99992
-rw-r--r--metadata/md5-cache/sci-chemistry/ksdssp-040728-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/modeller-10.52
-rw-r--r--metadata/md5-cache/sci-chemistry/molden-6.9-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/moldy-2.16e-r22
-rw-r--r--metadata/md5-cache/sci-chemistry/molequeue-0.9.0-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/molmol-2k_p2-r82
-rw-r--r--metadata/md5-cache/sci-chemistry/molmol-2k_p2-r96
-rw-r--r--metadata/md5-cache/sci-chemistry/molsketch-0.7.2-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/mopac7-1.15-r14
-rw-r--r--metadata/md5-cache/sci-chemistry/mpqc-2.3.1-r44
-rw-r--r--metadata/md5-cache/sci-chemistry/mustang-3.2.22
-rw-r--r--metadata/md5-cache/sci-chemistry/namd-2.1014
-rw-r--r--metadata/md5-cache/sci-chemistry/openbabel-3.1.1_p20210225-r112
-rw-r--r--metadata/md5-cache/sci-chemistry/openbabel-999914
-rw-r--r--metadata/md5-cache/sci-chemistry/pdbcat-1.3-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/pdbmat-3.89-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/probe-2.13.1109092
-rw-r--r--metadata/md5-cache/sci-chemistry/procheck-3.5.4-r315
-rw-r--r--metadata/md5-cache/sci-chemistry/propka-3.4.02
-rw-r--r--metadata/md5-cache/sci-chemistry/propka-3.5.116
-rw-r--r--metadata/md5-cache/sci-chemistry/psi-3.4.0-r24
-rw-r--r--metadata/md5-cache/sci-chemistry/pymol-3.0.02
-rw-r--r--metadata/md5-cache/sci-chemistry/raster3d-3.0.6-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/suitename-0.3.0706282
-rw-r--r--metadata/md5-cache/sci-chemistry/surf-1.02
-rw-r--r--metadata/md5-cache/sci-chemistry/theseus-3.3.0-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/threeV-1.2-r22
-rw-r--r--metadata/md5-cache/sci-chemistry/tinker-8.2.1-r14
-rw-r--r--metadata/md5-cache/sci-chemistry/tm-align-20150914-r12
-rw-r--r--metadata/md5-cache/sci-chemistry/vmd-1.9.4_alpha572
-rw-r--r--metadata/md5-cache/sci-chemistry/vmd-1.9.4_alpha57-r118
-rw-r--r--metadata/md5-cache/sci-chemistry/votca-2022.1-r114
-rw-r--r--metadata/md5-cache/sci-chemistry/votca-999914
-rw-r--r--metadata/md5-cache/sci-chemistry/wxmacmolplt-7.7.24
-rw-r--r--metadata/md5-cache/sci-chemistry/xyza2pipe-2012100111
75 files changed, 144 insertions, 165 deletions
diff --git a/metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.4 b/metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.4
index 08f09d3d4497..1843b068abcc 100644
--- a/metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.4
+++ b/metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.4
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/Becksteinlab/GromacsWrapper/archive/release-0.8.4.tar.gz -> GromacsWrapper-0.8.4.tar.gz
-_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 vcs-snapshot eab6d8533446763c2e9777d8bbd1594e
+_eclasses_=distutils-r1 39c571155ace3dd926fe0d6440cf0a50 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 c1fc393cd1e72f093b4838e29d27918c python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd vcs-snapshot 3d327d546f76e4c2054573ff0d78fad2
_md5_=186a2e983e24b6f2de6e21319f4678d0
diff --git a/metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.5 b/metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.5
index fcad7b866f37..a28933460c81 100644
--- a/metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.5
+++ b/metadata/md5-cache/sci-chemistry/GromacsWrapper-0.8.5
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/Becksteinlab/GromacsWrapper/archive/release-0.8.5.tar.gz -> GromacsWrapper-0.8.5.tar.gz
-_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 vcs-snapshot eab6d8533446763c2e9777d8bbd1594e
+_eclasses_=distutils-r1 39c571155ace3dd926fe0d6440cf0a50 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 c1fc393cd1e72f093b4838e29d27918c python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd vcs-snapshot 3d327d546f76e4c2054573ff0d78fad2
_md5_=186a2e983e24b6f2de6e21319f4678d0
diff --git a/metadata/md5-cache/sci-chemistry/MDAnalysis-2.6.1 b/metadata/md5-cache/sci-chemistry/MDAnalysis-2.6.1
index 6ca60c74bbd0..85c81cda8e7c 100644
--- a/metadata/md5-cache/sci-chemistry/MDAnalysis-2.6.1
+++ b/metadata/md5-cache/sci-chemistry/MDAnalysis-2.6.1
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 python_tar
RESTRICT=test !test? ( test )
SLOT=0
SRC_URI=https://files.pythonhosted.org/packages/source/M/MDAnalysis/MDAnalysis-2.6.1.tar.gz
-_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 pypi 2eecb475512bc76e5ea9192a681b9e6b python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=distutils-r1 39c571155ace3dd926fe0d6440cf0a50 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 pypi 2eecb475512bc76e5ea9192a681b9e6b python-r1 c1fc393cd1e72f093b4838e29d27918c python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=9956ad98bf5fb15bc52b3c20913235f2
diff --git a/metadata/md5-cache/sci-chemistry/Manifest.gz b/metadata/md5-cache/sci-chemistry/Manifest.gz
index 91aba4fa3583..c1ab5821961e 100644
--- a/metadata/md5-cache/sci-chemistry/Manifest.gz
+++ b/metadata/md5-cache/sci-chemistry/Manifest.gz
Binary files differ
diff --git a/metadata/md5-cache/sci-chemistry/ParmEd-3.4.3 b/metadata/md5-cache/sci-chemistry/ParmEd-3.4.3
index 2e11cf85b5f7..180425a693bb 100644
--- a/metadata/md5-cache/sci-chemistry/ParmEd-3.4.3
+++ b/metadata/md5-cache/sci-chemistry/ParmEd-3.4.3
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( python_targets_python3_10 )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/ParmEd/ParmEd/archive/refs/tags/3.4.3.tar.gz -> ParmEd-3.4.3.tar.gz
-_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=distutils-r1 39c571155ace3dd926fe0d6440cf0a50 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 c1fc393cd1e72f093b4838e29d27918c python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=9c159ea6d08a10ebaa436af52e048001
diff --git a/metadata/md5-cache/sci-chemistry/aqua-3.2-r3 b/metadata/md5-cache/sci-chemistry/aqua-3.2-r3
deleted file mode 100644
index 77ac403a5493..000000000000
--- a/metadata/md5-cache/sci-chemistry/aqua-3.2-r3
+++ /dev/null
@@ -1,15 +0,0 @@
-DEFINED_PHASES=compile install nofetch prepare setup
-DEPEND=app-shells/tcsh virtual/fortran
-DESCRIPTION=Program suite in this distribution calculates restraint violations
-EAPI=6
-HOMEPAGE=http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html
-INHERIT=fortran-2 toolchain-funcs
-IUSE=doc examples
-KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
-LICENSE=procheck
-RDEPEND=sci-chemistry/procheck virtual/fortran
-RESTRICT=fetch
-SLOT=0
-SRC_URI=aqua3.2.tar.gz doc? ( aqua-3.2-nmr_manual.tar.gz )
-_eclasses_=fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
-_md5_=448c80984b2fce68c6d5bef34cf480bc
diff --git a/metadata/md5-cache/sci-chemistry/autodock-4.2.6 b/metadata/md5-cache/sci-chemistry/autodock-4.2.6
index 5a22a3df1d18..54fc3fbc2994 100644
--- a/metadata/md5-cache/sci-chemistry/autodock-4.2.6
+++ b/metadata/md5-cache/sci-chemistry/autodock-4.2.6
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=compile configure install postinst prepare test
DESCRIPTION=A suite of automated docking tools
EAPI=7
@@ -10,5 +10,5 @@ LICENSE=GPL-2
RESTRICT=test
SLOT=0
SRC_URI=http://autodock.scripps.edu/downloads/autodock-registration/tars/dist426/autodocksuite-4.2.6-src.tar.gz
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=043b1d517858236ad58fab99602078ac
diff --git a/metadata/md5-cache/sci-chemistry/autodock-4.2.6-r1 b/metadata/md5-cache/sci-chemistry/autodock-4.2.6-r1
index 175033fb1875..0e3cc7440611 100644
--- a/metadata/md5-cache/sci-chemistry/autodock-4.2.6-r1
+++ b/metadata/md5-cache/sci-chemistry/autodock-4.2.6-r1
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=compile configure install postinst prepare
DESCRIPTION=A suite of automated docking tools
EAPI=8
@@ -10,5 +10,5 @@ LICENSE=GPL-2
RESTRICT=test
SLOT=0
SRC_URI=https://autodock.scripps.edu/downloads/autodock-registration/tars/dist426/autodocksuite-4.2.6-src.tar.gz https://dev.gentoo.org/~andrewammerlaan/autodock-4.2.6-drop-register-keyword.patch
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=933bacc9d6fe5c084e6ffbde3e590156
diff --git a/metadata/md5-cache/sci-chemistry/autodock_vina-1.1.2-r1 b/metadata/md5-cache/sci-chemistry/autodock_vina-1.1.2-r1
index c41a1e8d5411..434170e2196c 100644
--- a/metadata/md5-cache/sci-chemistry/autodock_vina-1.1.2-r1
+++ b/metadata/md5-cache/sci-chemistry/autodock_vina-1.1.2-r1
@@ -10,5 +10,5 @@ LICENSE=Apache-2.0
RDEPEND=dev-libs/boost:=
SLOT=0
SRC_URI=http://vina.scripps.edu/download/autodock_vina_1_1_2.tgz
-_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=5ccb5cb6cfb340eedaa0499968160c30
diff --git a/metadata/md5-cache/sci-chemistry/autodock_vina-1.2.5 b/metadata/md5-cache/sci-chemistry/autodock_vina-1.2.5
index 5a3fc43f2ffd..3625697b7b0a 100644
--- a/metadata/md5-cache/sci-chemistry/autodock_vina-1.2.5
+++ b/metadata/md5-cache/sci-chemistry/autodock_vina-1.2.5
@@ -5,10 +5,10 @@ EAPI=7
HOMEPAGE=http://vina.scripps.edu/
INHERIT=flag-o-matic toolchain-funcs
IUSE=debug
-KEYWORDS=~amd64 ~x86
+KEYWORDS=amd64 ~x86
LICENSE=Apache-2.0
RDEPEND=dev-libs/boost:=
SLOT=0
SRC_URI=https://github.com/ccsb-scripps/AutoDock-Vina/archive/refs/tags/v1.2.5.tar.gz -> autodock_vina-1.2.5.tar.gz
-_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
-_md5_=3cbd178d2cc1b60782c16cad5fc843c5
+_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
+_md5_=1deb03fede1c593ae7f91f1b9f7448ba
diff --git a/metadata/md5-cache/sci-chemistry/avogadro2-1.95.1 b/metadata/md5-cache/sci-chemistry/avogadro2-1.95.1
index 672eb18f5cc8..b8131c601a3e 100644
--- a/metadata/md5-cache/sci-chemistry/avogadro2-1.95.1
+++ b/metadata/md5-cache/sci-chemistry/avogadro2-1.95.1
@@ -13,5 +13,5 @@ RDEPEND=dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtwidgets:5 >=sci-libs/avogadrolib
RESTRICT=test
SLOT=0
SRC_URI=https://github.com/OpenChemistry/avogadroapp/archive/1.95.1.tar.gz -> avogadro2-1.95.1.tar.gz https://github.com/OpenChemistry/avogadro-i18n/archive/3b8a86cc37e988b043d1503d2f11068389b0aca3.tar.gz -> avogadro2-1.95.1-i18n.tar.gz
-_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df desktop 021728fdc1b03b36357dbc89489e0f0d docs 7f3c0d47338743498c69f1887a139f57 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=cmake 10a50dfaf728b802fcfd37f8d0da9056 desktop 021728fdc1b03b36357dbc89489e0f0d docs 7f3c0d47338743498c69f1887a139f57 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=63852b6e1a0d593b6df49dc2b1b457f0
diff --git a/metadata/md5-cache/sci-chemistry/avogadro2-1.97.0 b/metadata/md5-cache/sci-chemistry/avogadro2-1.97.0
index c149fd5f57eb..ef2944967885 100644
--- a/metadata/md5-cache/sci-chemistry/avogadro2-1.97.0
+++ b/metadata/md5-cache/sci-chemistry/avogadro2-1.97.0
@@ -13,5 +13,5 @@ RDEPEND=dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtwidgets:5 >=sci-libs/avogadrolib
RESTRICT=test
SLOT=0
SRC_URI=https://github.com/OpenChemistry/avogadroapp/archive/1.97.0.tar.gz -> avogadro2-1.97.0.tar.gz https://github.com/OpenChemistry/avogadro-i18n/archive/13c4286102373658cea48a33b86536ab5793da66.tar.gz -> avogadro2-1.97.0-i18n.tar.gz
-_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df desktop 021728fdc1b03b36357dbc89489e0f0d docs 7f3c0d47338743498c69f1887a139f57 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=cmake 10a50dfaf728b802fcfd37f8d0da9056 desktop 021728fdc1b03b36357dbc89489e0f0d docs 7f3c0d47338743498c69f1887a139f57 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=4d16d471e4fb5d4f76219007401eda51
diff --git a/metadata/md5-cache/sci-chemistry/chemex-2024.05.2-r1 b/metadata/md5-cache/sci-chemistry/chemex-2024.05.2-r1
index 88e7d1a2fc15..7fb038e74891 100644
--- a/metadata/md5-cache/sci-chemistry/chemex-2024.05.2-r1
+++ b/metadata/md5-cache/sci-chemistry/chemex-2024.05.2-r1
@@ -13,5 +13,5 @@ REQUIRED_USE=^^ ( python_single_target_python3_11 python_single_target_python3_1
RESTRICT=test !test? ( test )
SLOT=0
SRC_URI=https://github.com/gbouvignies/ChemEx/archive/refs/tags/v2024.05.2.tar.gz -> chemex-2024.05.2.tar.gz
-_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=distutils-r1 39c571155ace3dd926fe0d6440cf0a50 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-single-r1 f7abe75c203a988aa9b5c460b6c7d0f1 python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=ab972cea82eedf80c5ebc16d5228124f
diff --git a/metadata/md5-cache/sci-chemistry/chemex-2024.05.3-r1 b/metadata/md5-cache/sci-chemistry/chemex-2024.05.3-r1
index f645cc8bff86..55836cfee8d6 100644
--- a/metadata/md5-cache/sci-chemistry/chemex-2024.05.3-r1
+++ b/metadata/md5-cache/sci-chemistry/chemex-2024.05.3-r1
@@ -13,5 +13,5 @@ REQUIRED_USE=^^ ( python_single_target_python3_11 python_single_target_python3_1
RESTRICT=test !test? ( test )
SLOT=0
SRC_URI=https://github.com/gbouvignies/ChemEx/archive/refs/tags/v2024.05.3.tar.gz -> chemex-2024.05.3.tar.gz
-_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=distutils-r1 39c571155ace3dd926fe0d6440cf0a50 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-single-r1 f7abe75c203a988aa9b5c460b6c7d0f1 python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=ab972cea82eedf80c5ebc16d5228124f
diff --git a/metadata/md5-cache/sci-chemistry/chemical-mime-data-0.1.94-r4 b/metadata/md5-cache/sci-chemistry/chemical-mime-data-0.1.94-r4
index 157cc2342eb4..8d48750c3673 100644
--- a/metadata/md5-cache/sci-chemistry/chemical-mime-data-0.1.94-r4
+++ b/metadata/md5-cache/sci-chemistry/chemical-mime-data-0.1.94-r4
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/intltool dev-util/desktop-file-utils dev-libs/libxslt || ( gnome-base/librsvg media-gfx/imagemagick[xml,png,svg] ) media-gfx/imagemagick[png] virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=dev-util/intltool dev-util/desktop-file-utils dev-libs/libxslt || ( gnome-base/librsvg media-gfx/imagemagick[xml,png,svg] ) media-gfx/imagemagick[png] virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure postinst postrm preinst prepare
DEPEND=x11-misc/shared-mime-info dev-util/desktop-file-utils x11-misc/shared-mime-info
DESCRIPTION=A collection of data files to add support for chemical MIME types
@@ -10,5 +10,5 @@ LICENSE=LGPL-2.1
RDEPEND=x11-misc/shared-mime-info
SLOT=0
SRC_URI=https://downloads.sourceforge.net/chemical-mime/chemical-mime-data-0.1.94.tar.bz2
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=31a79f2f46adb2d4b203b2f9b3b0bd41
diff --git a/metadata/md5-cache/sci-chemistry/chemical-mime-data-0.1.95_pre20171122 b/metadata/md5-cache/sci-chemistry/chemical-mime-data-0.1.95_pre20171122
index 69a83ad42fc6..8ad1d3329fa1 100644
--- a/metadata/md5-cache/sci-chemistry/chemical-mime-data-0.1.95_pre20171122
+++ b/metadata/md5-cache/sci-chemistry/chemical-mime-data-0.1.95_pre20171122
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/intltool dev-util/desktop-file-utils dev-libs/libxslt virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=dev-util/intltool dev-util/desktop-file-utils dev-libs/libxslt virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure postinst postrm preinst prepare
DEPEND=x11-misc/shared-mime-info
DESCRIPTION=A collection of data files to add support for chemical MIME types
@@ -11,5 +11,5 @@ LICENSE=LGPL-2.1
RDEPEND=x11-misc/shared-mime-info
SLOT=0
SRC_URI=https://github.com/dleidert/chemical-mime/archive/4fd66e3b3b7d922555d1e25587908b036805c45b.tar.gz -> chemical-mime-data-0.1.95_pre20171122.tar.gz
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=9ce375c7d4ec0b92d83b9e566a5c9505
diff --git a/metadata/md5-cache/sci-chemistry/chemtool-1.6.14 b/metadata/md5-cache/sci-chemistry/chemtool-1.6.14
index 3ad2cf91f21f..01a411ee57e2 100644
--- a/metadata/md5-cache/sci-chemistry/chemtool-1.6.14
+++ b/metadata/md5-cache/sci-chemistry/chemtool-1.6.14
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/glib:2 media-gfx/transfig x11-libs/gtk+:2 x11-libs/libX11 x11-libs/pango emf? ( media-libs/libemf )
DESCRIPTION=A GTK program for drawing organic molecules
@@ -11,5 +11,5 @@ LICENSE=GPL-2
RDEPEND=dev-libs/glib:2 media-gfx/transfig x11-libs/gtk+:2 x11-libs/libX11 x11-libs/pango emf? ( media-libs/libemf )
SLOT=0
SRC_URI=http://ruby.chemie.uni-freiburg.de/~martin/chemtool/chemtool-1.6.14.tar.gz
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d desktop 021728fdc1b03b36357dbc89489e0f0d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 desktop 021728fdc1b03b36357dbc89489e0f0d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=ec2a33e3b596e37ff37f7d67c3756378
diff --git a/metadata/md5-cache/sci-chemistry/chemtool-1.6.14-r1 b/metadata/md5-cache/sci-chemistry/chemtool-1.6.14-r1
index f5a6cdd17fbf..0a0531514e43 100644
--- a/metadata/md5-cache/sci-chemistry/chemtool-1.6.14-r1
+++ b/metadata/md5-cache/sci-chemistry/chemtool-1.6.14-r1
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/glib:2 >=media-gfx/fig2dev-3.2.9-r1 x11-libs/gtk+:2 x11-libs/libX11 x11-libs/pango emf? ( media-libs/libemf )
DESCRIPTION=A GTK program for drawing organic molecules
@@ -11,5 +11,5 @@ LICENSE=GPL-2
RDEPEND=dev-libs/glib:2 >=media-gfx/fig2dev-3.2.9-r1 x11-libs/gtk+:2 x11-libs/libX11 x11-libs/pango emf? ( media-libs/libemf )
SLOT=0
SRC_URI=http://ruby.chemie.uni-freiburg.de/~martin/chemtool/chemtool-1.6.14.tar.gz https://upload.wikimedia.org/wikipedia/commons/5/58/Adamantane_acsv.svg -> chemtool.png
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d desktop 021728fdc1b03b36357dbc89489e0f0d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 desktop 021728fdc1b03b36357dbc89489e0f0d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=453d4c21f1a070c9a7623112bcebb3f9
diff --git a/metadata/md5-cache/sci-chemistry/cluster-1.3.081231-r1 b/metadata/md5-cache/sci-chemistry/cluster-1.3.081231-r1
index 0dcb4f578ecb..43c22e251938 100644
--- a/metadata/md5-cache/sci-chemistry/cluster-1.3.081231-r1
+++ b/metadata/md5-cache/sci-chemistry/cluster-1.3.081231-r1
@@ -7,5 +7,5 @@ KEYWORDS=amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=richardson
SLOT=0
SRC_URI=http://kinemage.biochem.duke.edu/downloads/software/cluster/cluster.1.3.081231.src.tgz
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=764c8f8a4af6dd888eea6b7aeb2ebaa0
diff --git a/metadata/md5-cache/sci-chemistry/cluster-1.3.081231-r2 b/metadata/md5-cache/sci-chemistry/cluster-1.3.081231-r2
index 35007a625272..0463194d8680 100644
--- a/metadata/md5-cache/sci-chemistry/cluster-1.3.081231-r2
+++ b/metadata/md5-cache/sci-chemistry/cluster-1.3.081231-r2
@@ -7,5 +7,5 @@ KEYWORDS=amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=richardson
SLOT=0
SRC_URI=http://kinemage.biochem.duke.edu/downloads/software/cluster/cluster.1.3.081231.src.tgz
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=736dc52647e90d4a83eb85374107a121
diff --git a/metadata/md5-cache/sci-chemistry/dssp-2.2.1-r3 b/metadata/md5-cache/sci-chemistry/dssp-2.2.1-r3
index cf645df754a4..6730cd60c276 100644
--- a/metadata/md5-cache/sci-chemistry/dssp-2.2.1-r3
+++ b/metadata/md5-cache/sci-chemistry/dssp-2.2.1-r3
@@ -9,5 +9,5 @@ LICENSE=Boost-1.0
RDEPEND=dev-libs/boost:=[bzip2,zlib]
SLOT=0
SRC_URI=ftp://ftp.cmbi.ru.nl/pub/molbio/software/dssp-2/dssp-2.2.1.tgz
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=59e4c5020f62cd80c28ba1ca822f59ec
diff --git a/metadata/md5-cache/sci-chemistry/dssp-3.0.11 b/metadata/md5-cache/sci-chemistry/dssp-3.0.11
index 81f815c62e71..090022ae5c48 100644
--- a/metadata/md5-cache/sci-chemistry/dssp-3.0.11
+++ b/metadata/md5-cache/sci-chemistry/dssp-3.0.11
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=install prepare
DEPEND=dev-lang/perl:= dev-libs/boost:=[bzip2,zlib]
DESCRIPTION=The protein secondary structure standard
@@ -11,5 +11,5 @@ RDEPEND=dev-lang/perl:= dev-libs/boost:=[bzip2,zlib]
RESTRICT=test
SLOT=0
SRC_URI=https://github.com/cmbi/hssp/archive/refs/tags/3.0.11.tar.gz -> dssp-3.0.11.tar.gz
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=b8fa01bcfdc6923a04bf6e867113abfd
diff --git a/metadata/md5-cache/sci-chemistry/dssp-4.4.4.1 b/metadata/md5-cache/sci-chemistry/dssp-4.4.4.1
index 9578c8a75feb..16b0fe0de0c8 100644
--- a/metadata/md5-cache/sci-chemistry/dssp-4.4.4.1
+++ b/metadata/md5-cache/sci-chemistry/dssp-4.4.4.1
@@ -9,5 +9,5 @@ LICENSE=BSD-2
RDEPEND=dev-libs/boost:=[zlib] >=dev-libs/libmcfp-1.2.2 >=sci-libs/libcifpp-5.2.0
SLOT=0
SRC_URI=https://github.com/PDB-REDO/dssp/archive/refs/tags/v4.4.4.1.tar.gz -> dssp-4.4.4.1.tar.gz
-_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=cmake 10a50dfaf728b802fcfd37f8d0da9056 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=63e550aeee23032d4bfbef6cd6181249
diff --git a/metadata/md5-cache/sci-chemistry/dssp-4.4.7 b/metadata/md5-cache/sci-chemistry/dssp-4.4.7
index 0b184c41ce69..76425f958888 100644
--- a/metadata/md5-cache/sci-chemistry/dssp-4.4.7
+++ b/metadata/md5-cache/sci-chemistry/dssp-4.4.7
@@ -9,5 +9,5 @@ LICENSE=BSD-2
RDEPEND=dev-libs/boost:=[zlib] >=dev-libs/libmcfp-1.2.2 >=sci-libs/libcifpp-7.0.3
SLOT=0
SRC_URI=https://github.com/PDB-REDO/dssp/archive/refs/tags/v4.4.7.tar.gz -> dssp-4.4.7.tar.gz
-_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=cmake 10a50dfaf728b802fcfd37f8d0da9056 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=1dfbcbab0e49a51cf29b67c63661afa0
diff --git a/metadata/md5-cache/sci-chemistry/easychem-0.6-r2 b/metadata/md5-cache/sci-chemistry/easychem-0.6-r2
index b5d61e7adcb7..157040f43edf 100644
--- a/metadata/md5-cache/sci-chemistry/easychem-0.6-r2
+++ b/metadata/md5-cache/sci-chemistry/easychem-0.6-r2
@@ -10,5 +10,5 @@ LICENSE=GPL-2
RDEPEND=app-text/ghostscript-gpl media-gfx/pstoedit x11-libs/gtk+:2
SLOT=0
SRC_URI=https://downloads.sourceforge.net/easychem/easychem-0.6.tar.gz
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=d427dd0a2388957fae9904fc72043684
diff --git a/metadata/md5-cache/sci-chemistry/elem-1.0.3-r3 b/metadata/md5-cache/sci-chemistry/elem-1.0.3-r3
index 6226ff334cda..a11ba5243e8a 100644
--- a/metadata/md5-cache/sci-chemistry/elem-1.0.3-r3
+++ b/metadata/md5-cache/sci-chemistry/elem-1.0.3-r3
@@ -9,5 +9,5 @@ LICENSE=GPL-2
RDEPEND=x11-libs/xforms
SLOT=0
SRC_URI=https://downloads.sourceforge.net/elem/elem-src-1.0.3-Linux.tgz
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=0780abdcd22c8c27afec8380545ff843
diff --git a/metadata/md5-cache/sci-chemistry/gelemental-2.0.0-r1 b/metadata/md5-cache/sci-chemistry/gelemental-2.0.0-r1
index 463c1fb7d8a3..d116ccdbe3a2 100644
--- a/metadata/md5-cache/sci-chemistry/gelemental-2.0.0-r1
+++ b/metadata/md5-cache/sci-chemistry/gelemental-2.0.0-r1
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/intltool sys-devel/gettext virtual/pkgconfig doc? ( app-text/doxygen ) >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=dev-util/intltool sys-devel/gettext virtual/pkgconfig doc? ( app-text/doxygen ) >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install postinst postrm preinst prepare
DEPEND=dev-cpp/gtkmm:2.4 dev-cpp/glibmm:2 dev-util/desktop-file-utils x11-misc/shared-mime-info
DESCRIPTION=Periodic table viewer with detailed information on the chemical elements
@@ -11,5 +11,5 @@ LICENSE=GPL-3 MIT
RDEPEND=dev-cpp/gtkmm:2.4 dev-cpp/glibmm:2
SLOT=0
SRC_URI=https://github.com/ginggs/gelemental/archive/v2.0.0.tar.gz -> gelemental-2.0.0.tar.gz
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=e6c4f2d91d68cb5588f70952f51db5f6
diff --git a/metadata/md5-cache/sci-chemistry/gelemental-2.0.2 b/metadata/md5-cache/sci-chemistry/gelemental-2.0.2
index 14be2938d614..ada4c610f8f8 100644
--- a/metadata/md5-cache/sci-chemistry/gelemental-2.0.2
+++ b/metadata/md5-cache/sci-chemistry/gelemental-2.0.2
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/intltool sys-devel/gettext virtual/pkgconfig doc? ( app-text/doxygen ) >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=dev-util/intltool sys-devel/gettext virtual/pkgconfig doc? ( app-text/doxygen ) >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install postinst postrm preinst prepare
DEPEND=dev-cpp/gtkmm:2.4 dev-cpp/glibmm:2
DESCRIPTION=Periodic table viewer with detailed information on the chemical elements
@@ -12,5 +12,5 @@ LICENSE=GPL-3 MIT
RDEPEND=dev-cpp/gtkmm:2.4 dev-cpp/glibmm:2
SLOT=0
SRC_URI=https://github.com/ginggs/gelemental/archive/v2.0.2.tar.gz -> gelemental-2.0.2.tar.gz
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=d981218a68da67f0cb9d487b33545477
diff --git a/metadata/md5-cache/sci-chemistry/gnome-chemistry-utils-0.14.17_p6-r2 b/metadata/md5-cache/sci-chemistry/gnome-chemistry-utils-0.14.17_p6-r2
index 5a0e778ddc2d..4ff80863ea6a 100644
--- a/metadata/md5-cache/sci-chemistry/gnome-chemistry-utils-0.14.17_p6-r2
+++ b/metadata/md5-cache/sci-chemistry/gnome-chemistry-utils-0.14.17_p6-r2
@@ -1,4 +1,4 @@
-BDEPEND=app-text/doxygen app-text/yelp-tools virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=app-text/doxygen app-text/yelp-tools virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install postinst postrm preinst prepare
DEPEND=>=dev-libs/glib-2.36.0:2 >=dev-libs/libxml2-2.4.16:2 >=gnome-extra/libgsf-1.14.9 >=sci-chemistry/bodr-5 >=sci-chemistry/chemical-mime-data-0.1.94 >=sci-chemistry/openbabel-2.3.0:0= >=x11-libs/cairo-1.6.0 >=x11-libs/gdk-pixbuf-2.22.0 >=x11-libs/goffice-0.10.12 x11-libs/gtk+:3[X] >=x11-libs/libX11-1.0.0 virtual/glu gnumeric? ( >=app-office/gnumeric-1.12.42:= )
DESCRIPTION=Programs and library containing GTK widgets and C++ classes related to chemistry
@@ -12,5 +12,5 @@ LICENSE=GPL-3
RDEPEND=>=dev-libs/glib-2.36.0:2 >=dev-libs/libxml2-2.4.16:2 >=gnome-extra/libgsf-1.14.9 >=sci-chemistry/bodr-5 >=sci-chemistry/chemical-mime-data-0.1.94 >=sci-chemistry/openbabel-2.3.0:0= >=x11-libs/cairo-1.6.0 >=x11-libs/gdk-pixbuf-2.22.0 >=x11-libs/goffice-0.10.12 x11-libs/gtk+:3[X] >=x11-libs/libX11-1.0.0 virtual/glu gnumeric? ( >=app-office/gnumeric-1.12.42:= )
SLOT=0
SRC_URI=http://download.savannah.gnu.org/releases/gchemutils/0.14/gnome-chemistry-utils-0.14.17.tar.xz mirror://debian/pool/main/g/gnome-chemistry-utils/gnome-chemistry-utils_0.14.17-6.debian.tar.xz
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=6e6bb6adab9851a4bcb2590675bf3466
diff --git a/metadata/md5-cache/sci-chemistry/gperiodic-3.0.3 b/metadata/md5-cache/sci-chemistry/gperiodic-3.0.3
index 0e2d430c7da1..98bd81557f63 100644
--- a/metadata/md5-cache/sci-chemistry/gperiodic-3.0.3
+++ b/metadata/md5-cache/sci-chemistry/gperiodic-3.0.3
@@ -11,5 +11,5 @@ LICENSE=GPL-2
RDEPEND=sys-libs/ncurses:0 x11-libs/gtk+:2 x11-libs/cairo[X]
SLOT=0
SRC_URI=https://downloads.sourceforge.net/project/gperiodic/gperiodic-3.0.3.tar.gz
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=111cdad824ef96ba0ff830dbcb0f14eb
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2020.7-r1 b/metadata/md5-cache/sci-chemistry/gromacs-2020.7-r1
index b8de7e27b9a9..3c61972ff630 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2020.7-r1
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2020.7-r1
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( single-precision double-precision ) doc? ( !build-manual ) cud
RESTRICT=!test? ( test )
SLOT=0/2020.7
SRC_URI=https://ftp.gromacs.org/gromacs/gromacs-2020.7.tar.gz doc? ( https://ftp.gromacs.org/manual/manual-2020.7.pdf ) test? ( https://ftp.gromacs.org/regressiontests/regressiontests-2020.7.tar.gz )
-_eclasses_=bash-completion-r1 f5e7a020fd9c741740756aac61bf75ff cmake 258a4691fd43b8cd5814cb1acbb3c7df cuda 283d0f298f6c196c755a0f8d50daca85 distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=bash-completion-r1 f5e7a020fd9c741740756aac61bf75ff cmake 10a50dfaf728b802fcfd37f8d0da9056 cuda 283d0f298f6c196c755a0f8d50daca85 distutils-r1 39c571155ace3dd926fe0d6440cf0a50 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-single-r1 f7abe75c203a988aa9b5c460b6c7d0f1 python-utils-r1 6881b056477c23167d9a6b33e146374e readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=7164f6d5a59e991b3e31d7cd931cdaa5
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2021.7-r1 b/metadata/md5-cache/sci-chemistry/gromacs-2021.7-r1
index 9bfbe0e24c1b..fd0da818b51d 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2021.7-r1
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2021.7-r1
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( single-precision double-precision ) doc? ( !build-manual ) cud
RESTRICT=!test? ( test )
SLOT=0/2021.7
SRC_URI=https://ftp.gromacs.org/gromacs/gromacs-2021.7.tar.gz doc? ( https://ftp.gromacs.org/manual/manual-2021.7.pdf ) test? ( https://ftp.gromacs.org/regressiontests/regressiontests-2021.7.tar.gz )
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diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2022.6 b/metadata/md5-cache/sci-chemistry/gromacs-2022.6
index b624fe5875d1..01488db3076b 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2022.6
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2022.6
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( single-precision double-precision ) doc? ( !build-manual ) cud
RESTRICT=!test? ( test )
SLOT=0/2022.6
SRC_URI=https://ftp.gromacs.org/gromacs/gromacs-2022.6.tar.gz doc? ( https://ftp.gromacs.org/manual/manual-2022.6.pdf ) test? ( https://ftp.gromacs.org/regressiontests/regressiontests-2022.6.tar.gz )
-_eclasses_=bash-completion-r1 f5e7a020fd9c741740756aac61bf75ff cmake 258a4691fd43b8cd5814cb1acbb3c7df cuda 283d0f298f6c196c755a0f8d50daca85 distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3
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diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2023.4 b/metadata/md5-cache/sci-chemistry/gromacs-2023.4
index 776c96425254..63972ef0dda5 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2023.4
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2023.4
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( single-precision double-precision ) doc? ( !build-manual ) cud
RESTRICT=!test? ( test )
SLOT=0/2023.4
SRC_URI=https://ftp.gromacs.org/gromacs/gromacs-2023.4.tar.gz doc? ( https://ftp.gromacs.org/manual/manual-2023.4.pdf ) test? ( https://ftp.gromacs.org/regressiontests/regressiontests-2023.4.tar.gz )
-_eclasses_=bash-completion-r1 f5e7a020fd9c741740756aac61bf75ff cmake 258a4691fd43b8cd5814cb1acbb3c7df cuda 283d0f298f6c196c755a0f8d50daca85 distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3
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diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2023.9999 b/metadata/md5-cache/sci-chemistry/gromacs-2023.9999
index 7dceedc7d4be..2cf6449d3bc0 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2023.9999
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2023.9999
@@ -11,5 +11,5 @@ RDEPEND=blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-11:=[profi
REQUIRED_USE=|| ( single-precision double-precision ) doc? ( !build-manual ) cuda? ( single-precision ) opencl? ( single-precision ) cuda? ( !opencl ) clang-cuda? ( clang cuda ) mkl? ( !blas !fftw !lapack ) ^^ ( python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12 )
RESTRICT=!test? ( test )
SLOT=0/2023.9999
-_eclasses_=bash-completion-r1 f5e7a020fd9c741740756aac61bf75ff cmake 258a4691fd43b8cd5814cb1acbb3c7df cuda 283d0f298f6c196c755a0f8d50daca85 distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d git-r3 fbb2889c81f3a05910c1524db69425c1 multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3
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diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2024 b/metadata/md5-cache/sci-chemistry/gromacs-2024
index aba64d7872cc..537028719c42 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2024
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2024
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( single-precision double-precision ) doc? ( !build-manual ) cud
RESTRICT=!test? ( test )
SLOT=0/2024
SRC_URI=https://ftp.gromacs.org/gromacs/gromacs-2024.tar.gz doc? ( https://ftp.gromacs.org/manual/manual-2024.pdf ) test? ( https://ftp.gromacs.org/regressiontests/regressiontests-2024.tar.gz )
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diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2024.1 b/metadata/md5-cache/sci-chemistry/gromacs-2024.1
index c274ddf0e5e5..95191a2acd5a 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2024.1
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2024.1
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( single-precision double-precision ) doc? ( !build-manual ) cud
RESTRICT=!test? ( test )
SLOT=0/2024.1
SRC_URI=https://ftp.gromacs.org/gromacs/gromacs-2024.1.tar.gz doc? ( https://ftp.gromacs.org/manual/manual-2024.1.pdf ) test? ( https://ftp.gromacs.org/regressiontests/regressiontests-2024.1.tar.gz )
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diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2024.2 b/metadata/md5-cache/sci-chemistry/gromacs-2024.2
index ef7b30ae2d8f..4301c85ad2a1 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2024.2
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2024.2
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( single-precision double-precision ) doc? ( !build-manual ) cud
RESTRICT=!test? ( test )
SLOT=0/2024.2
SRC_URI=https://ftp.gromacs.org/gromacs/gromacs-2024.2.tar.gz doc? ( https://ftp.gromacs.org/manual/manual-2024.2.pdf ) test? ( https://ftp.gromacs.org/regressiontests/regressiontests-2024.2.tar.gz )
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diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2024.9999 b/metadata/md5-cache/sci-chemistry/gromacs-2024.9999
index d9570082619f..f796e8e2371b 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2024.9999
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2024.9999
@@ -11,5 +11,5 @@ RDEPEND=blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-11:=[profi
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RESTRICT=!test? ( test )
SLOT=0/2024.9999
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+_eclasses_=bash-completion-r1 f5e7a020fd9c741740756aac61bf75ff cmake 10a50dfaf728b802fcfd37f8d0da9056 cuda 283d0f298f6c196c755a0f8d50daca85 distutils-r1 39c571155ace3dd926fe0d6440cf0a50 flag-o-matic e503ea5acc20410237ba33ec3f7c857d git-r3 875eb471682d3e1f18da124be97dcc81 multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-single-r1 f7abe75c203a988aa9b5c460b6c7d0f1 python-utils-r1 6881b056477c23167d9a6b33e146374e readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=bc9440ee2c526e412faba6dd25dd9650
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-9999 b/metadata/md5-cache/sci-chemistry/gromacs-9999
index 82ce4502ed49..b0414f2af932 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-9999
+++ b/metadata/md5-cache/sci-chemistry/gromacs-9999
@@ -11,5 +11,5 @@ RDEPEND=blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-11:=[profi
REQUIRED_USE=|| ( single-precision double-precision ) doc? ( !build-manual ) cuda? ( single-precision ) opencl? ( single-precision ) cuda? ( !opencl ) clang-cuda? ( clang cuda ) mkl? ( !blas !fftw !lapack ) ^^ ( python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12 )
RESTRICT=!test? ( test )
SLOT=0/9999
-_eclasses_=bash-completion-r1 f5e7a020fd9c741740756aac61bf75ff cmake 258a4691fd43b8cd5814cb1acbb3c7df cuda 283d0f298f6c196c755a0f8d50daca85 distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d git-r3 fbb2889c81f3a05910c1524db69425c1 multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=bash-completion-r1 f5e7a020fd9c741740756aac61bf75ff cmake 10a50dfaf728b802fcfd37f8d0da9056 cuda 283d0f298f6c196c755a0f8d50daca85 distutils-r1 39c571155ace3dd926fe0d6440cf0a50 flag-o-matic e503ea5acc20410237ba33ec3f7c857d git-r3 875eb471682d3e1f18da124be97dcc81 multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-single-r1 f7abe75c203a988aa9b5c460b6c7d0f1 python-utils-r1 6881b056477c23167d9a6b33e146374e readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=bc9440ee2c526e412faba6dd25dd9650
diff --git a/metadata/md5-cache/sci-chemistry/ksdssp-040728-r1 b/metadata/md5-cache/sci-chemistry/ksdssp-040728-r1
index e61e6747b96a..d792edad3fa7 100644
--- a/metadata/md5-cache/sci-chemistry/ksdssp-040728-r1
+++ b/metadata/md5-cache/sci-chemistry/ksdssp-040728-r1
@@ -10,5 +10,5 @@ LICENSE=BSD
RDEPEND=sci-libs/libpdb++
SLOT=0
SRC_URI=mirror://gentoo/ksdssp-040728.shar
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=d9484bfa46cce35d2317ffe1b0a890a9
diff --git a/metadata/md5-cache/sci-chemistry/modeller-10.5 b/metadata/md5-cache/sci-chemistry/modeller-10.5
index 1759f1fa3d26..a11cca3637d9 100644
--- a/metadata/md5-cache/sci-chemistry/modeller-10.5
+++ b/metadata/md5-cache/sci-chemistry/modeller-10.5
@@ -13,5 +13,5 @@ REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 python_tar
RESTRICT=mirror
SLOT=0
SRC_URI=https://salilab.org/modeller/10.5/modeller-10.5.tar.gz
-_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 eapi8-dosym 5ac4857ad078256d939c44f7c64197a9 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=distutils-r1 39c571155ace3dd926fe0d6440cf0a50 eapi8-dosym 5ac4857ad078256d939c44f7c64197a9 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 c1fc393cd1e72f093b4838e29d27918c python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=c389b9e9e74f5718f27ab8b4c1311583
diff --git a/metadata/md5-cache/sci-chemistry/molden-6.9-r1 b/metadata/md5-cache/sci-chemistry/molden-6.9-r1
index 0b4e7daa2763..f216787b40a9 100644
--- a/metadata/md5-cache/sci-chemistry/molden-6.9-r1
+++ b/metadata/md5-cache/sci-chemistry/molden-6.9-r1
@@ -11,5 +11,5 @@ LICENSE=MOLDEN
RDEPEND=x11-libs/libXmu opengl? ( media-libs/freeglut virtual/opengl virtual/glu ) sci-chemistry/surf virtual/fortran
SLOT=0
SRC_URI=ftp://ftp.science.ru.nl/pub/Molden/molden6.9.tar.gz
-_eclasses_=desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic e503ea5acc20410237ba33ec3f7c857d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic e503ea5acc20410237ba33ec3f7c857d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=9aa6ccc7bbccdef90f61709317e200a8
diff --git a/metadata/md5-cache/sci-chemistry/moldy-2.16e-r2 b/metadata/md5-cache/sci-chemistry/moldy-2.16e-r2
index c6cc2c2f397f..371b9e7cff1c 100644
--- a/metadata/md5-cache/sci-chemistry/moldy-2.16e-r2
+++ b/metadata/md5-cache/sci-chemistry/moldy-2.16e-r2
@@ -9,5 +9,5 @@ KEYWORDS=amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos
LICENSE=GPL-2
SLOT=0
SRC_URI=ftp://ftp.earth.ox.ac.uk/pub/keith/moldy-2.16e.tar.gz
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=e9e40f56e24c1ccce0db04513b4fee54
diff --git a/metadata/md5-cache/sci-chemistry/molequeue-0.9.0-r1 b/metadata/md5-cache/sci-chemistry/molequeue-0.9.0-r1
index b0c72c98d209..9078aebdab14 100644
--- a/metadata/md5-cache/sci-chemistry/molequeue-0.9.0-r1
+++ b/metadata/md5-cache/sci-chemistry/molequeue-0.9.0-r1
@@ -13,5 +13,5 @@ REQUIRED_USE=server? ( client ) test? ( server ) zeromq? ( || ( python_targets_p
RESTRICT=test !test? ( test )
SLOT=0
SRC_URI=https://github.com/OpenChemistry/molequeue/archive/0.9.0.tar.gz -> molequeue-0.9.0.tar.gz
-_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df eapi8-dosym 5ac4857ad078256d939c44f7c64197a9 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 virtualx 817571665ee28575da44ee08135089e5 xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=cmake 10a50dfaf728b802fcfd37f8d0da9056 eapi8-dosym 5ac4857ad078256d939c44f7c64197a9 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 c1fc393cd1e72f093b4838e29d27918c python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd virtualx 0654dc258d045433af18ffe046363961 xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=3ff43d0d8e46513eac84b0e1af756aec
diff --git a/metadata/md5-cache/sci-chemistry/molmol-2k_p2-r8 b/metadata/md5-cache/sci-chemistry/molmol-2k_p2-r8
index 164fd88fa536..17d0096251a4 100644
--- a/metadata/md5-cache/sci-chemistry/molmol-2k_p2-r8
+++ b/metadata/md5-cache/sci-chemistry/molmol-2k_p2-r8
@@ -9,5 +9,5 @@ LICENSE=molmol
RDEPEND=|| ( ( media-libs/mesa[X(+)] x11-libs/libGLw ) media-libs/mesa[motif(-),X(+)] ) media-libs/libjpeg-turbo:= media-libs/libpng:= media-libs/tiff:= sys-libs/zlib virtual/glu x11-libs/libXpm x11-libs/motif:0 x11-apps/xdpyinfo
SLOT=0
SRC_URI=ftp://ftp.mol.biol.ethz.ch/software/MOLMOL/unix-gzip/molmol-2k.2.0-src.tar.gz ftp://ftp.mol.biol.ethz.ch/software/MOLMOL/unix-gzip/molmol-2k.2.0-doc.tar.gz https://dev.gentoo.org/~soap/distfiles/molmol-patches.tbz2 https://dev.gentoo.org/~pacho/molmol/molmol_256.png
-_eclasses_=desktop 021728fdc1b03b36357dbc89489e0f0d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=desktop 021728fdc1b03b36357dbc89489e0f0d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=fc57f883c4cfaa312919dc79d49c13b5
diff --git a/metadata/md5-cache/sci-chemistry/molmol-2k_p2-r9 b/metadata/md5-cache/sci-chemistry/molmol-2k_p2-r9
index 247f18e5965d..bc96730dc09b 100644
--- a/metadata/md5-cache/sci-chemistry/molmol-2k_p2-r9
+++ b/metadata/md5-cache/sci-chemistry/molmol-2k_p2-r9
@@ -4,10 +4,10 @@ DESCRIPTION=Publication-quality molecular visualization package
EAPI=8
HOMEPAGE=http://www.csb.yale.edu/userguides/graphics/molmol/molmol_descrip.html http://pjf.net/science/molmol.html
INHERIT=desktop toolchain-funcs
-KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux
+KEYWORDS=amd64 ~ppc ~x86 ~amd64-linux ~x86-linux
LICENSE=molmol
RDEPEND=|| ( ( media-libs/mesa[X(+)] x11-libs/libGLw ) media-libs/mesa[motif(-),X(+)] ) media-libs/libjpeg-turbo:= media-libs/libpng:= media-libs/tiff:= sys-libs/zlib virtual/glu x11-libs/libXpm x11-libs/motif:0 x11-apps/xdpyinfo
SLOT=0
SRC_URI=ftp://ftp.mol.biol.ethz.ch/software/MOLMOL/unix-gzip/molmol-2k.2.0-src.tar.gz ftp://ftp.mol.biol.ethz.ch/software/MOLMOL/unix-gzip/molmol-2k.2.0-doc.tar.gz https://dev.gentoo.org/~soap/distfiles/molmol-patches.tbz2 https://dev.gentoo.org/~pacho/molmol/molmol_256.png
-_eclasses_=desktop 021728fdc1b03b36357dbc89489e0f0d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
-_md5_=296a901f0cebad008d80d5ed9541f5cb
+_eclasses_=desktop 021728fdc1b03b36357dbc89489e0f0d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
+_md5_=6d3466520a79f1ee0465d1975d83d7a3
diff --git a/metadata/md5-cache/sci-chemistry/molsketch-0.7.2-r1 b/metadata/md5-cache/sci-chemistry/molsketch-0.7.2-r1
index 6cc641ecae89..eaa8e54f00c1 100644
--- a/metadata/md5-cache/sci-chemistry/molsketch-0.7.2-r1
+++ b/metadata/md5-cache/sci-chemistry/molsketch-0.7.2-r1
@@ -11,5 +11,5 @@ LICENSE=GPL-2
RDEPEND=>=sci-chemistry/openbabel-3:= dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtnetwork:5 dev-qt/qtprintsupport:5 dev-qt/qtsvg:5 dev-qt/qtwidgets:5
SLOT=0
SRC_URI=https://downloads.sourceforge.net/project/molsketch/Molsketch/Molsketch-0.7.2-src.tar.gz
-_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=cmake 10a50dfaf728b802fcfd37f8d0da9056 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=97dc879eb5f859808ab23e82f7e63188
diff --git a/metadata/md5-cache/sci-chemistry/mopac7-1.15-r1 b/metadata/md5-cache/sci-chemistry/mopac7-1.15-r1
index adfd2147e85b..d426cb933027 100644
--- a/metadata/md5-cache/sci-chemistry/mopac7-1.15-r1
+++ b/metadata/md5-cache/sci-chemistry/mopac7-1.15-r1
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 virtual/fortran
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 virtual/fortran
DEFINED_PHASES=compile configure install prepare setup
DEPEND=dev-libs/libf2c virtual/fortran
DESCRIPTION=Autotooled, updated version of a powerful, fast semi-empirical package
@@ -11,5 +11,5 @@ LICENSE=public-domain
RDEPEND=dev-libs/libf2c virtual/fortran
SLOT=0
SRC_URI=http://www.bioinformatics.org/ghemical/download/current/mopac7-1.15.tar.gz http://wwwuser.gwdg.de/~ggroenh/qmmm/mopac/dcart.f http://wwwuser.gwdg.de/~ggroenh/qmmm/mopac/gmxmop.f
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic e503ea5acc20410237ba33ec3f7c857d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 flag-o-matic e503ea5acc20410237ba33ec3f7c857d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=9c2c3b3180ffe6cee9380ecbf8b8f29d
diff --git a/metadata/md5-cache/sci-chemistry/mpqc-2.3.1-r4 b/metadata/md5-cache/sci-chemistry/mpqc-2.3.1-r4
index 0ba6a50b0b44..f15f6f007c86 100644
--- a/metadata/md5-cache/sci-chemistry/mpqc-2.3.1-r4
+++ b/metadata/md5-cache/sci-chemistry/mpqc-2.3.1-r4
@@ -1,4 +1,4 @@
-BDEPEND=dev-lang/perl app-alternatives/lex virtual/pkgconfig doc? ( app-text/doxygen media-gfx/graphviz ) >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=dev-lang/perl app-alternatives/lex virtual/pkgconfig doc? ( app-text/doxygen media-gfx/graphviz ) >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install postinst prepare test
DEPEND=virtual/blas virtual/lapack mpi? ( virtual/mpi[cxx] ) tk? ( dev-lang/tk:0 )
DESCRIPTION=The Massively Parallel Quantum Chemistry Program
@@ -11,5 +11,5 @@ LICENSE=GPL-2
RDEPEND=virtual/blas virtual/lapack mpi? ( virtual/mpi[cxx] ) tk? ( dev-lang/tk:0 )
SLOT=0
SRC_URI=https://downloads.sourceforge.net/mpqc/mpqc-2.3.1.tar.bz2
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=311e41863133b8b4c7a09cc14d7000b2
diff --git a/metadata/md5-cache/sci-chemistry/mustang-3.2.2 b/metadata/md5-cache/sci-chemistry/mustang-3.2.2
index 0a7ff5a31d69..2ab95a209495 100644
--- a/metadata/md5-cache/sci-chemistry/mustang-3.2.2
+++ b/metadata/md5-cache/sci-chemistry/mustang-3.2.2
@@ -7,5 +7,5 @@ KEYWORDS=amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=BSD
SLOT=0
SRC_URI=http://www.csse.monash.edu.au/~karun/mustang/mustang_v3.2.2.tgz
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=72b39ceaad63740f4488fd6f1fd3691e
diff --git a/metadata/md5-cache/sci-chemistry/namd-2.10 b/metadata/md5-cache/sci-chemistry/namd-2.10
deleted file mode 100644
index 86514432a9da..000000000000
--- a/metadata/md5-cache/sci-chemistry/namd-2.10
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install nofetch postinst prepare
-DEPEND=>=sys-cluster/charm-6.5.1-r2 sci-libs/fftw:3.0 dev-lang/tcl:0= virtual/pkgconfig app-shells/tcsh
-DESCRIPTION=A powerful and highly parallelized molecular dynamics code
-EAPI=6
-HOMEPAGE=http://www.ks.uiuc.edu/Research/namd/
-INHERIT=multilib toolchain-funcs flag-o-matic
-KEYWORDS=~amd64
-LICENSE=namd
-RDEPEND=>=sys-cluster/charm-6.5.1-r2 sci-libs/fftw:3.0 dev-lang/tcl:0=
-RESTRICT=fetch
-SLOT=0
-SRC_URI=NAMD_2.10_Source.tar.gz
-_eclasses_=eqawarn c9847c43b3253a276ae2eabddedab3d7 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
-_md5_=9ececc89d028148efb247f92866214f8
diff --git a/metadata/md5-cache/sci-chemistry/openbabel-3.1.1_p20210225-r1 b/metadata/md5-cache/sci-chemistry/openbabel-3.1.1_p20210225-r1
index cd17f349ff0d..ce660f802edf 100644
--- a/metadata/md5-cache/sci-chemistry/openbabel-3.1.1_p20210225-r1
+++ b/metadata/md5-cache/sci-chemistry/openbabel-3.1.1_p20210225-r1
@@ -1,17 +1,17 @@
BDEPEND=dev-lang/perl doc? ( app-text/doxygen dev-texlive/texlive-latex ) perl? ( >=dev-lang/swig-2 ) python? ( >=dev-lang/swig-2 ) test? ( dev-lang/python ) app-alternatives/ninja >=dev-build/cmake-3.20.5
DEFINED_PHASES=compile configure install postinst postrm prepare pretend setup test
-DEPEND=dev-cpp/eigen:3 dev-libs/libxml2:2 sys-libs/zlib:= inchi? ( sci-libs/inchi ) json? ( >=dev-libs/rapidjson-1.1.0 ) png? ( x11-libs/cairo ) python? ( python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) ) wxwidgets? ( x11-libs/wxGTK:3.2-gtk3[X] ) perl? ( dev-lang/perl )
+DEPEND=dev-cpp/eigen:3 dev-libs/libxml2:2 sys-libs/zlib:= inchi? ( sci-libs/inchi ) json? ( >=dev-libs/rapidjson-1.1.0 ) png? ( x11-libs/cairo ) python? ( python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) python_targets_python3_12? ( dev-lang/python:3.12 ) ) wxwidgets? ( x11-libs/wxGTK:3.2-gtk3[X] ) perl? ( dev-lang/perl )
DESCRIPTION=Interconverts file formats used in molecular modeling
EAPI=8
HOMEPAGE=https://openbabel.org/ https://github.com/openbabel/openbabel/
INHERIT=cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils
-IUSE=cpu_flags_arm_neon cpu_flags_x86_sse2 cpu_flags_x86_sse4_2 doc examples +inchi json minimal openmp perl png python test wxwidgets python_targets_python3_10 python_targets_python3_11
+IUSE=cpu_flags_arm_neon cpu_flags_x86_sse2 cpu_flags_x86_sse4_2 doc examples +inchi json minimal openmp perl png python test wxwidgets python_targets_python3_10 python_targets_python3_11 python_targets_python3_12
KEYWORDS=amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos
LICENSE=GPL-2
-RDEPEND=dev-cpp/eigen:3 dev-libs/libxml2:2 sys-libs/zlib:= inchi? ( sci-libs/inchi ) json? ( >=dev-libs/rapidjson-1.1.0 ) png? ( x11-libs/cairo ) python? ( python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) ) wxwidgets? ( x11-libs/wxGTK:3.2-gtk3[X] ) perl? ( dev-lang/perl:= !sci-chemistry/openbabel-perl )
-REQUIRED_USE=python? ( || ( python_targets_python3_10 python_targets_python3_11 ) ) test? ( inchi json !minimal wxwidgets )
+RDEPEND=dev-cpp/eigen:3 dev-libs/libxml2:2 sys-libs/zlib:= inchi? ( sci-libs/inchi ) json? ( >=dev-libs/rapidjson-1.1.0 ) png? ( x11-libs/cairo ) python? ( python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) python_targets_python3_12? ( dev-lang/python:3.12 ) ) wxwidgets? ( x11-libs/wxGTK:3.2-gtk3[X] ) perl? ( dev-lang/perl:= !sci-chemistry/openbabel-perl )
+REQUIRED_USE=python? ( || ( python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 ) ) test? ( inchi json !minimal wxwidgets )
RESTRICT=!test? ( test )
SLOT=0/7.0.0
SRC_URI=https://github.com/openbabel/openbabel/archive/08e23f39b0cc39b4eebd937a5a2ffc1a7bac3e1b.tar.gz -> openbabel-3.1.1_p20210225.tar.gz https://openbabel.org/docs/dev/_static/babel130.png -> openbabel.png https://openbabel.org/OBTitle.jpg -> openbabel.jpg
-_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 perl-functions c3fca037246e877693badea0df3b0ef8 python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5 xdg-utils baea6080dd821f5562d715887954c9d3
-_md5_=827f2fe855e8a85b100827fa1fd377ff
+_eclasses_=cmake 10a50dfaf728b802fcfd37f8d0da9056 desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 perl-functions c3fca037246e877693badea0df3b0ef8 python-r1 c1fc393cd1e72f093b4838e29d27918c python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5 xdg-utils baea6080dd821f5562d715887954c9d3
+_md5_=1647cef4ecf923608c5e83b1c506d402
diff --git a/metadata/md5-cache/sci-chemistry/openbabel-9999 b/metadata/md5-cache/sci-chemistry/openbabel-9999
index a2dafff5f5b6..ebff29047ba7 100644
--- a/metadata/md5-cache/sci-chemistry/openbabel-9999
+++ b/metadata/md5-cache/sci-chemistry/openbabel-9999
@@ -1,17 +1,17 @@
BDEPEND=dev-lang/perl doc? ( app-text/doxygen dev-texlive/texlive-latex ) perl? ( >=dev-lang/swig-2 ) python? ( >=dev-lang/swig-2 ) test? ( dev-lang/python ) app-alternatives/ninja >=dev-build/cmake-3.20.5 >=dev-vcs/git-1.8.2.1[curl]
DEFINED_PHASES=compile configure install postinst postrm prepare pretend setup test unpack
-DEPEND=dev-cpp/eigen:3 dev-libs/libxml2:2 sys-libs/zlib:= inchi? ( sci-libs/inchi ) json? ( >=dev-libs/rapidjson-1.1.0 ) png? ( x11-libs/cairo ) python? ( python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) ) wxwidgets? ( x11-libs/wxGTK:3.2-gtk3[X] ) perl? ( dev-lang/perl )
+DEPEND=dev-cpp/eigen:3 dev-libs/libxml2:2 sys-libs/zlib:= inchi? ( sci-libs/inchi ) json? ( >=dev-libs/rapidjson-1.1.0 ) png? ( x11-libs/cairo ) python? ( python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) python_targets_python3_12? ( dev-lang/python:3.12 ) ) wxwidgets? ( x11-libs/wxGTK:3.2-gtk3[X] ) perl? ( dev-lang/perl )
DESCRIPTION=Interconverts file formats used in molecular modeling
EAPI=8
-HOMEPAGE=https://openbabel.org/
+HOMEPAGE=https://openbabel.org/ https://github.com/openbabel/openbabel/
INHERIT=cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils git-r3
-IUSE=cpu_flags_arm_neon cpu_flags_x86_sse2 cpu_flags_x86_sse4_2 doc examples +inchi json minimal openmp perl png python test wxwidgets python_targets_python3_10 python_targets_python3_11
+IUSE=cpu_flags_arm_neon cpu_flags_x86_sse2 cpu_flags_x86_sse4_2 doc examples +inchi json minimal openmp perl png python test wxwidgets python_targets_python3_10 python_targets_python3_11 python_targets_python3_12
LICENSE=GPL-2
PROPERTIES=live
-RDEPEND=dev-cpp/eigen:3 dev-libs/libxml2:2 sys-libs/zlib:= inchi? ( sci-libs/inchi ) json? ( >=dev-libs/rapidjson-1.1.0 ) png? ( x11-libs/cairo ) python? ( python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) ) wxwidgets? ( x11-libs/wxGTK:3.2-gtk3[X] ) perl? ( dev-lang/perl:= !sci-chemistry/openbabel-perl )
-REQUIRED_USE=python? ( || ( python_targets_python3_10 python_targets_python3_11 ) ) test? ( inchi json !minimal wxwidgets )
+RDEPEND=dev-cpp/eigen:3 dev-libs/libxml2:2 sys-libs/zlib:= inchi? ( sci-libs/inchi ) json? ( >=dev-libs/rapidjson-1.1.0 ) png? ( x11-libs/cairo ) python? ( python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) python_targets_python3_12? ( dev-lang/python:3.12 ) ) wxwidgets? ( x11-libs/wxGTK:3.2-gtk3[X] ) perl? ( dev-lang/perl:= !sci-chemistry/openbabel-perl )
+REQUIRED_USE=python? ( || ( python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 ) ) test? ( inchi json !minimal wxwidgets )
RESTRICT=!test? ( test )
SLOT=0/7.0.0
SRC_URI=https://openbabel.org/docs/dev/_static/babel130.png -> openbabel.png https://openbabel.org/OBTitle.jpg -> openbabel.jpg
-_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic e503ea5acc20410237ba33ec3f7c857d git-r3 fbb2889c81f3a05910c1524db69425c1 multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 perl-functions c3fca037246e877693badea0df3b0ef8 python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5 xdg-utils baea6080dd821f5562d715887954c9d3
-_md5_=e993c1bcc1653108fde1c4a9feb22f37
+_eclasses_=cmake 10a50dfaf728b802fcfd37f8d0da9056 desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic e503ea5acc20410237ba33ec3f7c857d git-r3 875eb471682d3e1f18da124be97dcc81 multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 perl-functions c3fca037246e877693badea0df3b0ef8 python-r1 c1fc393cd1e72f093b4838e29d27918c python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5 xdg-utils baea6080dd821f5562d715887954c9d3
+_md5_=1647cef4ecf923608c5e83b1c506d402
diff --git a/metadata/md5-cache/sci-chemistry/pdbcat-1.3-r1 b/metadata/md5-cache/sci-chemistry/pdbcat-1.3-r1
index ce342eaab945..ed0b6050fe4d 100644
--- a/metadata/md5-cache/sci-chemistry/pdbcat-1.3-r1
+++ b/metadata/md5-cache/sci-chemistry/pdbcat-1.3-r1
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=free-noncomm
SLOT=0
SRC_URI=http://www.ks.uiuc.edu/Development/MDTools/pdbcat/files/pdbcat-1.3.tar.gz
-_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=cmake 10a50dfaf728b802fcfd37f8d0da9056 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=468efdc0276a4b9606711e3ba7fc6d8f
diff --git a/metadata/md5-cache/sci-chemistry/pdbmat-3.89-r1 b/metadata/md5-cache/sci-chemistry/pdbmat-3.89-r1
index bea2d3178657..adb0b8535d24 100644
--- a/metadata/md5-cache/sci-chemistry/pdbmat-3.89-r1
+++ b/metadata/md5-cache/sci-chemistry/pdbmat-3.89-r1
@@ -11,5 +11,5 @@ LICENSE=CeCILL-2
RDEPEND=virtual/fortran
SLOT=0
SRC_URI=http://ecole.modelisation.free.fr/enm2011.tar.gz -> pdbmat-3.89.tar.gz
-_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic e503ea5acc20410237ba33ec3f7c857d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=cmake 10a50dfaf728b802fcfd37f8d0da9056 flag-o-matic e503ea5acc20410237ba33ec3f7c857d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=d9c289801412f2ea4102c59abe9d1df7
diff --git a/metadata/md5-cache/sci-chemistry/probe-2.13.110909 b/metadata/md5-cache/sci-chemistry/probe-2.13.110909
index 0a6efc95b956..50f0aefe715f 100644
--- a/metadata/md5-cache/sci-chemistry/probe-2.13.110909
+++ b/metadata/md5-cache/sci-chemistry/probe-2.13.110909
@@ -8,5 +8,5 @@ KEYWORDS=amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos
LICENSE=richardson
SLOT=0
SRC_URI=http://kinemage.biochem.duke.edu/downloads/software/probe/probe.2.13.110909.src.zip
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=20d4004785d7f5c28f6c68221735d7bc
diff --git a/metadata/md5-cache/sci-chemistry/procheck-3.5.4-r3 b/metadata/md5-cache/sci-chemistry/procheck-3.5.4-r3
deleted file mode 100644
index 0121529745ec..000000000000
--- a/metadata/md5-cache/sci-chemistry/procheck-3.5.4-r3
+++ /dev/null
@@ -1,15 +0,0 @@
-DEFINED_PHASES=compile install nofetch setup
-DEPEND=app-shells/tcsh virtual/fortran
-DESCRIPTION=Checks the stereochemical quality of a protein structure
-EAPI=6
-HOMEPAGE=https://www.ebi.ac.uk/thornton-srv/software/PROCHECK
-INHERIT=fortran-2 multilib toolchain-funcs versionator
-IUSE=doc
-KEYWORDS=amd64 ~x86 ~amd64-linux ~x86-linux
-LICENSE=procheck
-RDEPEND=app-shells/tcsh virtual/fortran
-RESTRICT=fetch
-SLOT=0
-SRC_URI=procheck-3.5.4.tar.gz procheck-3.5.4-README doc? ( procheck-3.5.4-manual.tar.gz )
-_eclasses_=estack c61c368a76fdf3a82fdf8dbaebea3804 fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 versionator d3fb3ba33acc3bbbdc4d7970227c100d
-_md5_=75245a4eea0845ebbcc0a7f906440430
diff --git a/metadata/md5-cache/sci-chemistry/propka-3.4.0 b/metadata/md5-cache/sci-chemistry/propka-3.4.0
index 8084980550db..ba9b98a2a6e8 100644
--- a/metadata/md5-cache/sci-chemistry/propka-3.4.0
+++ b/metadata/md5-cache/sci-chemistry/propka-3.4.0
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/jensengroup/propka/archive/refs/tags/v3.4.0.tar.gz -> propka-3.4.0.gh.tar.gz
-_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=distutils-r1 39c571155ace3dd926fe0d6440cf0a50 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 c1fc393cd1e72f093b4838e29d27918c python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=df9c2734ddc4d3199b2a42247a6a9496
diff --git a/metadata/md5-cache/sci-chemistry/propka-3.5.1 b/metadata/md5-cache/sci-chemistry/propka-3.5.1
new file mode 100644
index 000000000000..10a51e0003c2
--- /dev/null
+++ b/metadata/md5-cache/sci-chemistry/propka-3.5.1
@@ -0,0 +1,16 @@
+BDEPEND=test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?,python_targets_python3_12(-)?] >=dev-python/pytest-7.4.4[python_targets_python3_10(-)?,python_targets_python3_11(-)?,python_targets_python3_12(-)?] ) python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) python_targets_python3_12? ( dev-lang/python:3.12 ) >=dev-python/gpep517-15[python_targets_python3_10(-)?,python_targets_python3_11(-)?,python_targets_python3_12(-)?] >=dev-python/setuptools-69.0.3[python_targets_python3_10(-)?,python_targets_python3_11(-)?,python_targets_python3_12(-)?]
+DEFINED_PHASES=compile configure install prepare test
+DESCRIPTION=pKa-value prediction of ionizable groups in protein and protein-ligand complexes
+EAPI=8
+HOMEPAGE=https://github.com/jensengroup/propka
+INHERIT=distutils-r1
+IUSE=test python_targets_python3_10 python_targets_python3_11 python_targets_python3_12
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
+LICENSE=LGPL-2.1
+RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?,python_targets_python3_12(-)?] python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) python_targets_python3_12? ( dev-lang/python:3.12 )
+REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 )
+RESTRICT=!test? ( test )
+SLOT=0
+SRC_URI=https://github.com/jensengroup/propka/archive/refs/tags/v3.5.1.tar.gz -> propka-3.5.1.gh.tar.gz
+_eclasses_=distutils-r1 39c571155ace3dd926fe0d6440cf0a50 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 c1fc393cd1e72f093b4838e29d27918c python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
+_md5_=5449bec7e912fc71489169699c090921
diff --git a/metadata/md5-cache/sci-chemistry/psi-3.4.0-r2 b/metadata/md5-cache/sci-chemistry/psi-3.4.0-r2
index 16820e7e95d7..714dbb117a43 100644
--- a/metadata/md5-cache/sci-chemistry/psi-3.4.0-r2
+++ b/metadata/md5-cache/sci-chemistry/psi-3.4.0-r2
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/byacc virtual/pkgconfig test? ( dev-lang/perl ) >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 virtual/fortran
+BDEPEND=dev-util/byacc virtual/pkgconfig test? ( dev-lang/perl ) >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 virtual/fortran
DEFINED_PHASES=compile configure install prepare setup test
DEPEND=!sci-visualization/extrema virtual/blas virtual/lapack >=sci-libs/libint-1.1.4:1 virtual/fortran
DESCRIPTION=Suite for ab initio quantum chemistry computing various molecular properties
@@ -12,5 +12,5 @@ RDEPEND=!sci-visualization/extrema virtual/blas virtual/lapack >=sci-libs/libint
RESTRICT=test
SLOT=0
SRC_URI=https://downloads.sourceforge.net/psicode/psi-3.4.0.tar.gz
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=bc48e6e9f06a6ea7626b193b3d4cf3f6
diff --git a/metadata/md5-cache/sci-chemistry/pymol-3.0.0 b/metadata/md5-cache/sci-chemistry/pymol-3.0.0
index 542dcd1530b3..d1ce7e3a1741 100644
--- a/metadata/md5-cache/sci-chemistry/pymol-3.0.0
+++ b/metadata/md5-cache/sci-chemistry/pymol-3.0.0
@@ -13,5 +13,5 @@ RDEPEND=dev-cpp/msgpack-cxx dev-libs/mmtf-cpp dev-python/pyopengl[python_targets
REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 )
SLOT=0
SRC_URI=https://dev.gentoo.org/~pacho/pymol/pymol-1.8.4.0.png.xz https://github.com/schrodinger/pymol-open-source/archive/v3.0.0.tar.gz -> pymol-3.0.0.tar.gz
-_eclasses_=desktop 021728fdc1b03b36357dbc89489e0f0d distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=desktop 021728fdc1b03b36357dbc89489e0f0d distutils-r1 39c571155ace3dd926fe0d6440cf0a50 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 c1fc393cd1e72f093b4838e29d27918c python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=bfedc24544735cdbc2b161b08589c5b7
diff --git a/metadata/md5-cache/sci-chemistry/raster3d-3.0.6-r1 b/metadata/md5-cache/sci-chemistry/raster3d-3.0.6-r1
index d7261a078f12..ce86be3781b7 100644
--- a/metadata/md5-cache/sci-chemistry/raster3d-3.0.6-r1
+++ b/metadata/md5-cache/sci-chemistry/raster3d-3.0.6-r1
@@ -11,5 +11,5 @@ LICENSE=Artistic-2
RDEPEND=gd? ( media-libs/gd[jpeg,png] ) tiff? ( media-libs/tiff:= ) virtual/fortran
SLOT=0
SRC_URI=http://www.bmsc.washington.edu/raster3d/Raster3D_3.0-6.tar.gz -> Raster3D_3.0-6.tar
-_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea multilib c19072c3cd7ac5cb21de013f7e9832e0 prefix eab3c99d77fe00506c109c8a736186f7 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea multilib c19072c3cd7ac5cb21de013f7e9832e0 prefix eab3c99d77fe00506c109c8a736186f7 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=c88cc114475433720a159ba8343b0b8f
diff --git a/metadata/md5-cache/sci-chemistry/suitename-0.3.070628 b/metadata/md5-cache/sci-chemistry/suitename-0.3.070628
index a771b8cd5d7b..4902de97e037 100644
--- a/metadata/md5-cache/sci-chemistry/suitename-0.3.070628
+++ b/metadata/md5-cache/sci-chemistry/suitename-0.3.070628
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=richardson
SLOT=0
SRC_URI=http://kinemage.biochem.duke.edu/downloads/software/suitename/suitename.0.3.070628.src.tgz
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=33cf8423353d46b4e660655c6d0743c1
diff --git a/metadata/md5-cache/sci-chemistry/surf-1.0 b/metadata/md5-cache/sci-chemistry/surf-1.0
index 90ac8bb81911..6b1113803001 100644
--- a/metadata/md5-cache/sci-chemistry/surf-1.0
+++ b/metadata/md5-cache/sci-chemistry/surf-1.0
@@ -8,5 +8,5 @@ LICENSE=SURF
RDEPEND=!www-client/surf
SLOT=0
SRC_URI=http://www.ks.uiuc.edu/Research/vmd/extsrcs/surf.tar.Z -> surf-1.0.tar.Z
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=11ef3a5d77f012e8aec756eb7f11be56
diff --git a/metadata/md5-cache/sci-chemistry/theseus-3.3.0-r1 b/metadata/md5-cache/sci-chemistry/theseus-3.3.0-r1
index 4366487a98f5..b00fbcdd55bc 100644
--- a/metadata/md5-cache/sci-chemistry/theseus-3.3.0-r1
+++ b/metadata/md5-cache/sci-chemistry/theseus-3.3.0-r1
@@ -11,5 +11,5 @@ LICENSE=GPL-3
RDEPEND=sci-libs/gsl:= || ( sci-biology/clustalw:2 sci-biology/kalign sci-biology/mafft sci-biology/muscle sci-biology/probcons sci-biology/t-coffee )
SLOT=0
SRC_URI=http://www.theseus3d.org/src/theseus_3.3.0.tar.gz
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=73500632580c5b555fb757d3fbbc6005
diff --git a/metadata/md5-cache/sci-chemistry/threeV-1.2-r2 b/metadata/md5-cache/sci-chemistry/threeV-1.2-r2
index a88e13fa3fc8..b4dad8c5f743 100644
--- a/metadata/md5-cache/sci-chemistry/threeV-1.2-r2
+++ b/metadata/md5-cache/sci-chemistry/threeV-1.2-r2
@@ -8,5 +8,5 @@ LICENSE=GPL-2
PDEPEND=sci-chemistry/msms-bin
SLOT=0
SRC_URI=http://geometry.molmovdb.org/3v/3v-1.2.tgz
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
_md5_=9b48892b9b97ad2b9cf5f7fa52c9adf5
diff --git a/metadata/md5-cache/sci-chemistry/tinker-8.2.1-r1 b/metadata/md5-cache/sci-chemistry/tinker-8.2.1-r1
index fb65d5e67f95..b493b9cc9612 100644
--- a/metadata/md5-cache/sci-chemistry/tinker-8.2.1-r1
+++ b/metadata/md5-cache/sci-chemistry/tinker-8.2.1-r1
@@ -12,5 +12,5 @@ RDEPEND=>=sci-libs/fftw-3.2.2-r1[fortran,threads] dev-libs/maloc !sys-apps/bar !
RESTRICT=mirror
SLOT=0
SRC_URI=https://dasher.wustl.edu/tinker/downloads/tinker-8.2.1.tar.gz
-_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea java-pkg-2 b6d755b4f6afabfd933932be28b46368 java-utils-2 d2bf348d35fd96d97944269dfbaf0f97 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
-_md5_=6d70b9199ffe5bef7b7377329ae8781e
+_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea java-pkg-2 b6d755b4f6afabfd933932be28b46368 java-utils-2 b2e92a8220dc7b1bd2062ca11774798a multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd
+_md5_=8ba346ed5dc6eb90c98f78c539dab295
diff --git a/metadata/md5-cache/sci-chemistry/tm-align-20150914-r1 b/metadata/md5-cache/sci-chemistry/tm-align-20150914-r1
index a4ccfffb2d94..c38a344c0cde 100644
--- a/metadata/md5-cache/sci-chemistry/tm-align-20150914-r1
+++ b/metadata/md5-cache/sci-chemistry/tm-align-20150914-r1
@@ -11,5 +11,5 @@ LICENSE=tm-align
RDEPEND=virtual/fortran
SLOT=0
SRC_URI=http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools20150914.tar.gz
-_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic e503ea5acc20410237ba33ec3f7c857d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=cmake 10a50dfaf728b802fcfd37f8d0da9056 flag-o-matic e503ea5acc20410237ba33ec3f7c857d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=cfa1e63224fea8203e5337a0c285b503
diff --git a/metadata/md5-cache/sci-chemistry/vmd-1.9.4_alpha57 b/metadata/md5-cache/sci-chemistry/vmd-1.9.4_alpha57
index 17b30b786e0e..3574b36de52f 100644
--- a/metadata/md5-cache/sci-chemistry/vmd-1.9.4_alpha57
+++ b/metadata/md5-cache/sci-chemistry/vmd-1.9.4_alpha57
@@ -14,5 +14,5 @@ REQUIRED_USE=^^ ( python_single_target_python3_10 python_single_target_python3_1
RESTRICT=fetch
SLOT=0
SRC_URI=vmd-1.9.4a57.src.tar.gz fetch+https://dev.gentoo.org/~pacho/vmd/vmd-1.9.4_alpha57-gentoo-patches.tar.xz
-_eclasses_=cuda 283d0f298f6c196c755a0f8d50daca85 desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe prefix eab3c99d77fe00506c109c8a736186f7 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=cuda 283d0f298f6c196c755a0f8d50daca85 desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe prefix eab3c99d77fe00506c109c8a736186f7 python-single-r1 f7abe75c203a988aa9b5c460b6c7d0f1 python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=1df5bb32cce16a794d8a24f52093ec16
diff --git a/metadata/md5-cache/sci-chemistry/vmd-1.9.4_alpha57-r1 b/metadata/md5-cache/sci-chemistry/vmd-1.9.4_alpha57-r1
new file mode 100644
index 000000000000..ffba71877b19
--- /dev/null
+++ b/metadata/md5-cache/sci-chemistry/vmd-1.9.4_alpha57-r1
@@ -0,0 +1,18 @@
+BDEPEND=virtual/pkgconfig dev-lang/swig
+DEFINED_PHASES=compile configure install nofetch postinst postrm preinst prepare setup
+DEPEND=python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) python_single_target_python3_12? ( dev-lang/python:3.12 ) python_single_target_python3_10? ( >=dev-python/numpy-2[python_targets_python3_10(-)] ) python_single_target_python3_11? ( >=dev-python/numpy-2[python_targets_python3_11(-)] ) python_single_target_python3_12? ( >=dev-python/numpy-2[python_targets_python3_12(-)] ) >=dev-lang/tk-8.6.1:0= dev-lang/perl dev-libs/expat sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama )
+DESCRIPTION=Visual Molecular Dynamics
+EAPI=8
+HOMEPAGE=http://www.ks.uiuc.edu/Research/vmd/
+IDEPEND=dev-util/desktop-file-utils x11-misc/shared-mime-info
+INHERIT=cuda desktop prefix python-single-r1 toolchain-funcs xdg
+IUSE=cuda gromacs msms povray sqlite tachyon xinerama python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
+LICENSE=vmd
+RDEPEND=python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) python_single_target_python3_12? ( dev-lang/python:3.12 ) python_single_target_python3_10? ( >=dev-python/numpy-2[python_targets_python3_10(-)] ) python_single_target_python3_11? ( >=dev-python/numpy-2[python_targets_python3_11(-)] ) python_single_target_python3_12? ( >=dev-python/numpy-2[python_targets_python3_12(-)] ) >=dev-lang/tk-8.6.1:0= dev-lang/perl dev-libs/expat sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 x11-libs/libXft x11-libs/libXi cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) sqlite? ( dev-db/sqlite:3= ) tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) xinerama? ( x11-libs/libXinerama ) sci-biology/stride sci-chemistry/chemical-mime-data sci-chemistry/surf x11-misc/xdg-utils x11-terms/xterm msms? ( sci-chemistry/msms-bin ) povray? ( media-gfx/povray )
+REQUIRED_USE=^^ ( python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12 )
+RESTRICT=fetch
+SLOT=0
+SRC_URI=vmd-1.9.4a57.src.tar.gz fetch+https://dev.gentoo.org/~pacho/vmd/vmd-1.9.4_alpha57-gentoo-patches.tar.xz
+_eclasses_=cuda 283d0f298f6c196c755a0f8d50daca85 desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe prefix eab3c99d77fe00506c109c8a736186f7 python-single-r1 f7abe75c203a988aa9b5c460b6c7d0f1 python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
+_md5_=25a1afc32c9b1dafe048c3b9cdb71b86
diff --git a/metadata/md5-cache/sci-chemistry/votca-2022.1-r1 b/metadata/md5-cache/sci-chemistry/votca-2022.1-r1
index 8513e754b4ad..3e85b9844320 100644
--- a/metadata/md5-cache/sci-chemistry/votca-2022.1-r1
+++ b/metadata/md5-cache/sci-chemistry/votca-2022.1-r1
@@ -1,17 +1,17 @@
BDEPEND=virtual/pkgconfig app-alternatives/ninja >=dev-build/cmake-3.20.5
DEFINED_PHASES=compile configure install postinst prepare setup test
-DEPEND=!sci-libs/votca-tools !sci-chemistry/votca-csg !sci-chemistry/votca-xtp python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) app-shells/bash:* >=dev-cpp/eigen-3.3 dev-libs/boost:= dev-libs/expat sci-libs/fftw:3.0= dev-lang/perl gromacs? ( sci-chemistry/gromacs:=[gmxapi-legacy(+)] ) sci-libs/hdf5:=[cxx] sci-libs/libxc sci-libs/libint:2
+DEPEND=!sci-libs/votca-tools !sci-chemistry/votca-csg !sci-chemistry/votca-xtp python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) python_single_target_python3_12? ( dev-lang/python:3.12 ) app-shells/bash:* >=dev-cpp/eigen-3.3 dev-libs/boost:= dev-libs/expat sci-libs/fftw:3.0= dev-lang/perl gromacs? ( sci-chemistry/gromacs:=[gmxapi-legacy(+)] ) sci-libs/hdf5:=[cxx] sci-libs/libxc sci-libs/libint:2
DESCRIPTION=Versatile Object-oriented Toolkit for Coarse-graining Applications
-EAPI=7
+EAPI=8
HOMEPAGE=https://www.votca.org/
INHERIT=bash-completion-r1 cmake python-single-r1
-IUSE=+gromacs test python_single_target_python3_10 python_single_target_python3_11
+IUSE=+gromacs test python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12
KEYWORDS=amd64 ~x86 ~amd64-linux
LICENSE=Apache-2.0
-RDEPEND=!sci-libs/votca-tools !sci-chemistry/votca-csg !sci-chemistry/votca-xtp python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) app-shells/bash:* >=dev-cpp/eigen-3.3 dev-libs/boost:= dev-libs/expat sci-libs/fftw:3.0= dev-lang/perl gromacs? ( sci-chemistry/gromacs:=[gmxapi-legacy(+)] ) sci-libs/hdf5:=[cxx] sci-libs/libxc sci-libs/libint:2
-REQUIRED_USE=^^ ( python_single_target_python3_10 python_single_target_python3_11 )
+RDEPEND=!sci-libs/votca-tools !sci-chemistry/votca-csg !sci-chemistry/votca-xtp python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) python_single_target_python3_12? ( dev-lang/python:3.12 ) app-shells/bash:* >=dev-cpp/eigen-3.3 dev-libs/boost:= dev-libs/expat sci-libs/fftw:3.0= dev-lang/perl gromacs? ( sci-chemistry/gromacs:=[gmxapi-legacy(+)] ) sci-libs/hdf5:=[cxx] sci-libs/libxc sci-libs/libint:2
+REQUIRED_USE=^^ ( python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12 )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/votca/votca/archive/v2022.1.tar.gz -> votca-2022.1.tar.gz
-_eclasses_=bash-completion-r1 f5e7a020fd9c741740756aac61bf75ff cmake 258a4691fd43b8cd5814cb1acbb3c7df eapi8-dosym 5ac4857ad078256d939c44f7c64197a9 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3
-_md5_=fb03b8ed2514b1035986838f3ae5f5d7
+_eclasses_=bash-completion-r1 f5e7a020fd9c741740756aac61bf75ff cmake 10a50dfaf728b802fcfd37f8d0da9056 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 python-single-r1 f7abe75c203a988aa9b5c460b6c7d0f1 python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg-utils baea6080dd821f5562d715887954c9d3
+_md5_=ebbc3bd309f67bb7d6b8e7fb8f428a32
diff --git a/metadata/md5-cache/sci-chemistry/votca-9999 b/metadata/md5-cache/sci-chemistry/votca-9999
index f2f79fd95532..e3927392444e 100644
--- a/metadata/md5-cache/sci-chemistry/votca-9999
+++ b/metadata/md5-cache/sci-chemistry/votca-9999
@@ -1,16 +1,16 @@
BDEPEND=virtual/pkgconfig app-alternatives/ninja >=dev-build/cmake-3.20.5 >=dev-vcs/git-1.8.2.1[curl]
DEFINED_PHASES=compile configure install postinst prepare setup test unpack
-DEPEND=!sci-libs/votca-tools !sci-chemistry/votca-csg !sci-chemistry/votca-xtp python_single_target_python3_10? ( dev-lang/python:3.10 ) app-shells/bash:* >=dev-cpp/eigen-3.3 dev-libs/boost:= dev-libs/expat sci-libs/fftw:3.0= dev-lang/perl gromacs? ( sci-chemistry/gromacs:=[gmxapi-legacy(+)] ) sci-libs/hdf5:=[cxx] sci-libs/libxc sci-libs/libint:2
+DEPEND=!sci-libs/votca-tools !sci-chemistry/votca-csg !sci-chemistry/votca-xtp python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) python_single_target_python3_12? ( dev-lang/python:3.12 ) app-shells/bash:* >=dev-cpp/eigen-3.3 dev-libs/boost:= dev-libs/expat sci-libs/fftw:3.0= dev-lang/perl gromacs? ( sci-chemistry/gromacs:=[gmxapi-legacy(+)] ) sci-libs/hdf5:=[cxx] sci-libs/libxc sci-libs/libint:2
DESCRIPTION=Versatile Object-oriented Toolkit for Coarse-graining Applications
-EAPI=7
+EAPI=8
HOMEPAGE=https://www.votca.org/
INHERIT=bash-completion-r1 cmake python-single-r1 git-r3
-IUSE=+gromacs test +python_single_target_python3_10
+IUSE=+gromacs test python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12
LICENSE=Apache-2.0
PROPERTIES=live
-RDEPEND=!sci-libs/votca-tools !sci-chemistry/votca-csg !sci-chemistry/votca-xtp python_single_target_python3_10? ( dev-lang/python:3.10 ) app-shells/bash:* >=dev-cpp/eigen-3.3 dev-libs/boost:= dev-libs/expat sci-libs/fftw:3.0= dev-lang/perl gromacs? ( sci-chemistry/gromacs:=[gmxapi-legacy(+)] ) sci-libs/hdf5:=[cxx] sci-libs/libxc sci-libs/libint:2
-REQUIRED_USE=^^ ( python_single_target_python3_10 )
+RDEPEND=!sci-libs/votca-tools !sci-chemistry/votca-csg !sci-chemistry/votca-xtp python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) python_single_target_python3_12? ( dev-lang/python:3.12 ) app-shells/bash:* >=dev-cpp/eigen-3.3 dev-libs/boost:= dev-libs/expat sci-libs/fftw:3.0= dev-lang/perl gromacs? ( sci-chemistry/gromacs:=[gmxapi-legacy(+)] ) sci-libs/hdf5:=[cxx] sci-libs/libxc sci-libs/libint:2
+REQUIRED_USE=^^ ( python_single_target_python3_10 python_single_target_python3_11 python_single_target_python3_12 )
RESTRICT=!test? ( test )
SLOT=0
-_eclasses_=bash-completion-r1 f5e7a020fd9c741740756aac61bf75ff cmake 258a4691fd43b8cd5814cb1acbb3c7df eapi8-dosym 5ac4857ad078256d939c44f7c64197a9 flag-o-matic e503ea5acc20410237ba33ec3f7c857d git-r3 fbb2889c81f3a05910c1524db69425c1 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3
-_md5_=9bad3e5cfce3d5ec6e1ebfb769dd34dc
+_eclasses_=bash-completion-r1 f5e7a020fd9c741740756aac61bf75ff cmake 10a50dfaf728b802fcfd37f8d0da9056 flag-o-matic e503ea5acc20410237ba33ec3f7c857d git-r3 875eb471682d3e1f18da124be97dcc81 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 python-single-r1 f7abe75c203a988aa9b5c460b6c7d0f1 python-utils-r1 6881b056477c23167d9a6b33e146374e toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd xdg-utils baea6080dd821f5562d715887954c9d3
+_md5_=ebbc3bd309f67bb7d6b8e7fb8f428a32
diff --git a/metadata/md5-cache/sci-chemistry/wxmacmolplt-7.7.2 b/metadata/md5-cache/sci-chemistry/wxmacmolplt-7.7.2
index 60ec31722c66..33440150c776 100644
--- a/metadata/md5-cache/sci-chemistry/wxmacmolplt-7.7.2
+++ b/metadata/md5-cache/sci-chemistry/wxmacmolplt-7.7.2
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=media-libs/glew:0= media-libs/mesa[X(+)] x11-libs/wxGTK:3.2-gtk3[X,opengl]
DESCRIPTION=Chemical 3D graphics program with GAMESS input builder
@@ -10,5 +10,5 @@ LICENSE=GPL-2
RDEPEND=media-libs/glew:0= media-libs/mesa[X(+)] x11-libs/wxGTK:3.2-gtk3[X,opengl]
SLOT=0
SRC_URI=https://github.com/brettbode/wxmacmolplt/archive/refs/tags/v7.7.2.tar.gz -> wxmacmolplt-7.7.2.tar.gz
-_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5
+_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 333970c740aa7b1a92e4fcdc52f612bd wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5
_md5_=6bec686cac44bb650966071777126e7b
diff --git a/metadata/md5-cache/sci-chemistry/xyza2pipe-20121001 b/metadata/md5-cache/sci-chemistry/xyza2pipe-20121001
deleted file mode 100644
index 3ddbbb4fddf8..000000000000
--- a/metadata/md5-cache/sci-chemistry/xyza2pipe-20121001
+++ /dev/null
@@ -1,11 +0,0 @@
-DEFINED_PHASES=install prepare
-DESCRIPTION=Cross conversion environment of NMR spectra
-EAPI=6
-HOMEPAGE=http://fermi.pharm.hokudai.ac.jp/olivia/api/index.php/Xyza2pipe_src
-INHERIT=toolchain-funcs
-KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
-LICENSE=olivia
-SLOT=0
-SRC_URI=http://fermi.pharm.hokudai.ac.jp/olivia/documents/xyza2pipe.tgz -> xyza2pipe-20121001.tgz
-_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
-_md5_=d056cc95701850434eb72d01e71d2ea5