diff options
Diffstat (limited to 'metadata/md5-cache/sci-biology')
52 files changed, 102 insertions, 102 deletions
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz Binary files differindex 25888f015fb5..90a75976c7fe 100644 --- a/metadata/md5-cache/sci-biology/Manifest.gz +++ b/metadata/md5-cache/sci-biology/Manifest.gz diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 b/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 index b37bf39fb77f..9e349f0c78b7 100644 --- a/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 +++ b/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare pretend setup -DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc dev-haskell/mmap ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc dev-haskell/mmap ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler EAPI=6 HOMEPAGE=http://www.bcgsc.ca/platform/bioinfo/software/abyss/ @@ -9,5 +9,5 @@ LICENSE=abyss RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) SLOT=0 SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.2.tar.gz -> abyss-2.0.2.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=3b173739bd4e2f9d61a49918b3b8bc05 diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.3 b/metadata/md5-cache/sci-biology/abyss-2.0.3 index a9930f498eea..ee438a042b31 100644 --- a/metadata/md5-cache/sci-biology/abyss-2.0.3 +++ b/metadata/md5-cache/sci-biology/abyss-2.0.3 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare pretend setup -DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler EAPI=6 HOMEPAGE=http://www.bcgsc.ca/platform/bioinfo/software/abyss/ @@ -9,5 +9,5 @@ LICENSE=abyss RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) SLOT=0 SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.3.tar.gz -> abyss-2.0.3.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=4c70cbdf60d5dc2d564272b103f2b469 diff --git a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 b/metadata/md5-cache/sci-biology/allpathslg-52488-r2 index 9a69383a8427..570ae485f090 100644 --- a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 +++ b/metadata/md5-cache/sci-biology/allpathslg-52488-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare pretend setup -DEPEND=!sci-biology/allpaths !sci-biology/vaal dev-libs/boost:= >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=!sci-biology/allpaths !sci-biology/vaal dev-libs/boost:= >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=De novo assembly of whole-genome shotgun microreads EAPI=6 HOMEPAGE=http://www.broadinstitute.org/science/programs/genome-biology/crd @@ -8,5 +8,5 @@ LICENSE=MIT RDEPEND=!sci-biology/allpaths !sci-biology/vaal SLOT=0 SRC_URI=ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz https://dev.gentoo.org/~mgorny/dist/allpathslg-52488-patchset.tar.bz2 -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=8c8bda5ab2704db1e969660ebe5882c1 diff --git a/metadata/md5-cache/sci-biology/amos-3.1.0-r4 b/metadata/md5-cache/sci-biology/amos-3.1.0-r4 index fff2a76d0efd..439b6a48ed15 100644 --- a/metadata/md5-cache/sci-biology/amos-3.1.0-r4 +++ b/metadata/md5-cache/sci-biology/amos-3.1.0-r4 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare setup -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A Modular, Open-Source whole genome assembler EAPI=6 HOMEPAGE=http://amos.sourceforge.net/ @@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2 -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 26fdbe5e685d53f67303a3a43d9e4848 python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 26fdbe5e685d53f67303a3a43d9e4848 python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=aec6d1c76d5ea621c66e803800e2b3c4 diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a index e2a87820379e..f48bf60face8 100644 --- a/metadata/md5-cache/sci-biology/bfast-0.7.0a +++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Blat-like Fast Accurate Search Tool EAPI=5 HOMEPAGE=https://sourceforge.net/projects/bfast/ @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-perl/XML-Simple SLOT=0 SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=abc362f15c5107d96bedfb879ea0375f diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 b/metadata/md5-cache/sci-biology/biogrep-1.0-r2 index d408eea484c1..b3ed7c62ad82 100644 --- a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 +++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Multithreaded tool for matching large sets of patterns against biosequence DBs EAPI=6 HOMEPAGE=http://stephanopoulos.openwetware.org/BIOGREP.html @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf ) -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=9731727dae2a2514bcaa486b0059272e diff --git a/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 b/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 index b05bc62be9c8..684d1047356c 100644 --- a/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 +++ b/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=sci-libs/gsl:= dev-libs/boost:= sci-biology/snpfile >=sys-devel/autoconf-archive-2016.09.16 virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sci-libs/gsl:= dev-libs/boost:= sci-biology/snpfile >=sys-devel/autoconf-archive-2016.09.16 virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A linkage disequilibrium association mapping tool EAPI=6 HOMEPAGE=http://www.daimi.au.dk/~mailund/Blossoc/ @@ -8,5 +8,5 @@ LICENSE=GPL-3 RDEPEND=sci-libs/gsl:= dev-libs/boost:= sci-biology/snpfile SLOT=0 SRC_URI=http://www.daimi.au.dk/~mailund/Blossoc/download/blossoc-1.4.0.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=2fe1853c7621b633d2ee794ef3176e3f diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 index 60421f7f6f49..b21cd56de6f5 100644 --- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 +++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=dev-libs/argtable >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-libs/argtable >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Scalable multiple alignment of protein sequences EAPI=6 HOMEPAGE=http://www.clustal.org/omega/ @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-libs/argtable SLOT=0 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=9ade45d2e283bc5fcc7eef16725e18ae diff --git a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 index ca701f9eb6d4..0fa8f72dfb38 100644 --- a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 +++ b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare setup -DEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.62.0:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-cpp/eigen:3 virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.62.0:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-cpp/eigen:3 virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Transcript assembly and differential expression/regulation for RNA-Seq EAPI=6 HOMEPAGE=http://cufflinks.cbcb.umd.edu/ @@ -10,5 +10,5 @@ RDEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.62.0:= python_targets REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.2.1.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 26fdbe5e685d53f67303a3a43d9e4848 python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 26fdbe5e685d53f67303a3a43d9e4848 python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=816b8cb2b88b4938d0bf5ea1db34170b diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 index ce98a7d3600c..2b5110c56feb 100644 --- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Applications from the CBS group EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=4166ba28131fdf70907b31300aa4c08b diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 index 9703dbd97ade..bd879d61f4ae 100644 --- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Clustal Omega - Multiple Sequence Alignment EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=ef491b452e56be12961f62b16961f4f1 diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 index b97765edc0c7..a9b36cb4b74f 100644 --- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain analysis add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=bfee4f5b2b2adadb41de2eb02d4dcbc0 diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 index 760f80714b50..d0e274857905 100644 --- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain alignment add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=9f8b2caa273f4ae3b0463e6de6782660 diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 index e31806b0b3a7..0f76d35d5a1c 100644 --- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain search add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=920906439fbc5278460201b23a615736 diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 index 5648ce3ba64b..b5772e1fe30f 100644 --- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 +++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Simple menu of EMBOSS applications EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=d82c7c44ec76fa5d6165769a73e5df9a diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 index b9ef5c2196c6..c01958b70c12 100644 --- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=1b156bed7ea031aeb5464836dd987f18 diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 index b667f48988a5..d6867211f30b 100644 --- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 +++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of HMMER wrapper - sequence analysis with profile HMMs EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=83d02ae22d4e1864669639d9289cd112 diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 index facec7113b7f..c573e86da9c1 100644 --- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of InterProScan motif detection add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=73b0c29964ea3506d18ef6b6c8df70e1 diff --git a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 b/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 index 0ee92cbbef9b..6ca94d2a509c 100644 --- a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 +++ b/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/meme dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MEME-4.7.660.tar.gz -> embassy-meme-4.7.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=b18db6d7a2159272c7b69d34a14dc9b5 diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 index 4d25aa0ef320..863cf016f2b8 100644 --- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of MSE - Multiple Sequence Screen Editor EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=84df94b7c4b0f044de45cef524cbf453 diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 index 73ea600bb048..2d48594d2832 100644 --- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 +++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of The Phylogeny Inference Package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 freedist RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=00620d36fbf4790dc2ecfb240ba9816c diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 index 15d978260553..435d087cd8cf 100644 --- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein signature add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=4cb685046b5a39b624eb3467b815c2c4 diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 index a3e5485c5870..e0133be542a2 100644 --- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Protein structure add-on package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=634d624be78f958ed7fca02e7dc43bd4 diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 index c2fca281e0a6..a7332a38b37c 100644 --- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Transmembrane protein display EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=e50220ee11093554b589c1f9f53e7c09 diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 index c5e8a01a56be..3ca7342144bb 100644 --- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 +++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] DESCRIPTION=EMBOSS integrated version of Vienna RNA package - RNA folding EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=d257de40bcdb33c0735daac8a5f15fda diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 index a85da795da6b..61885f9df3fa 100644 --- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 +++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install postinst prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) DESCRIPTION=The European Molecular Biology Open Software Suite - A sequence analysis package EAPI=6 HOMEPAGE=http://emboss.sourceforge.net/ @@ -10,5 +10,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 readme.gentoo-r1 6f03e110529650f57fc7d1fb908b8986 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 readme.gentoo-r1 6f03e110529650f57fc7d1fb908b8986 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=99a47266a2a8f2fd0a874111491146e2 diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d b/metadata/md5-cache/sci-biology/eugene-4.1d index a4a39ab6eae2..796988cf33d7 100644 --- a/metadata/md5-cache/sci-biology/eugene-4.1d +++ b/metadata/md5-cache/sci-biology/eugene-4.1d @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=media-libs/gd[png] media-libs/libpng:0= >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=media-libs/gd[png] media-libs/libpng:0= >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Prokaryotic and Eukaryotic gene predictor EAPI=6 HOMEPAGE=http://eugene.toulouse.inra.fr/ @@ -9,5 +9,5 @@ RDEPEND=media-libs/gd[png] media-libs/libpng:0= RESTRICT=test SLOT=0 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=683d1e7f9daeda6cd20b92117330ea81 diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 index 001a128ced90..0a379c6cf139 100644 --- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 +++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=dev-libs/glib:2 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-libs/glib:2 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Generic tool for pairwise sequence comparison EAPI=6 HOMEPAGE=https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate @@ -10,5 +10,5 @@ RDEPEND=dev-libs/glib:2 REQUIRED_USE=test? ( utils ) SLOT=0 SRC_URI=http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=2efd53d13e6f08e4144477038f41e4af diff --git a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 index a3ce0a1ffa8a..a80dd2c3b7d2 100644 --- a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 +++ b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=sci-biology/libgtextutils virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sci-biology/libgtextutils virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Tools for Short Read FASTA/FASTQ file processing EAPI=6 HOMEPAGE=http://hannonlab.cshl.edu/fastx_toolkit @@ -8,5 +8,5 @@ LICENSE=AGPL-3 RDEPEND=dev-perl/PerlIO-gzip dev-perl/GDGraph sci-biology/libgtextutils:= sci-visualization/gnuplot SLOT=0 SRC_URI=https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2 -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=c3bb0edd6b01a31019cf5fd59e22122a diff --git a/metadata/md5-cache/sci-biology/gibbs-3.1 b/metadata/md5-cache/sci-biology/gibbs-3.1 index e0ce24addbca..d5b4a2f0dc61 100644 --- a/metadata/md5-cache/sci-biology/gibbs-3.1 +++ b/metadata/md5-cache/sci-biology/gibbs-3.1 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install postinst prepare test -DEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Identify motifs, conserved regions, in DNA or protein sequences EAPI=4 HOMEPAGE=http://bayesweb.wadsworth.org/gibbs/gibbs.html @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) SLOT=0 SRC_URI=mirror://gentoo/gibbs-3.1.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=e28918ff8ca46c8b8254e4e36f8d0bcf diff --git a/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 b/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 index cb27ec14b92c..c12aae084b9e 100644 --- a/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 +++ b/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A DNA sequencing data management framework - C/C++ API EAPI=4 HOMEPAGE=http://campagnelab.org/software/goby/ @@ -8,5 +8,5 @@ LICENSE=GPL-3 RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-cpp.zip -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=62b1fc794a90a87e0f80ab795108ee3c diff --git a/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 b/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 index 88bdf429d3e7..07d8de9ea609 100644 --- a/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 +++ b/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A DNA sequencing data management framework - C/C++ API EAPI=4 HOMEPAGE=http://campagnelab.org/software/goby/ @@ -8,5 +8,5 @@ LICENSE=GPL-3 RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-cpp.zip -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=2599766d541e65f4acfb94c4fa4e974e diff --git a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 index f5909769a88e..693ee66362b7 100644 --- a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 +++ b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test -DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A DNA sequencing data management framework - C/C++ API EAPI=5 HOMEPAGE=http://campagnelab.org/software/goby/ @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_2.0.1/goby_2.0.1-cpp.zip https://dev.gentoo.org/~mgorny/dist/goby-cpp-2.0.1-files.tar.bz2 -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=8282c100b202c470aedc98e37f6151ff diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r1 b/metadata/md5-cache/sci-biology/iedera-1.05-r1 index 0ec949450c7b..08e66eddb9bc 100644 --- a/metadata/md5-cache/sci-biology/iedera-1.05-r1 +++ b/metadata/md5-cache/sci-biology/iedera-1.05-r1 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A subset seed design tool for DNA sequence alignment EAPI=6 HOMEPAGE=http://bioinfo.lifl.fr/yass/iedera.php @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=ce77e1e27bd52fed2fd2af52744d6288 diff --git a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 index 3bc6d62afa5f..72cd6665cc76 100644 --- a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 +++ b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Gordon Text utils Library EAPI=6 HOMEPAGE=http://hannonlab.cshl.edu/fastx_toolkit/ @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=AGPL-3 SLOT=0/0 SRC_URI=http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2 -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=867c9b9e4eee26ad2a76ff6ff0594f52 diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 b/metadata/md5-cache/sci-biology/maq-0.7.1-r2 index 080b7a688b9e..8f274d07f5ae 100644 --- a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 +++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=install prepare -DEPEND=sys-libs/zlib >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sys-libs/zlib >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Mapping and Assembly with Qualities, mapping NGS reads to reference genomes EAPI=6 HOMEPAGE=http://maq.sourceforge.net/ @@ -8,5 +8,5 @@ LICENSE=GPL-3 RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=39ffb0025210075a8d7d7f6f81f8da56 diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 index ddfa93a7620f..892df2fe82ea 100644 --- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 +++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=media-libs/freeglut sys-libs/zlib >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=media-libs/freeglut sys-libs/zlib >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler EAPI=6 HOMEPAGE=http://maq.sourceforge.net/ @@ -8,5 +8,5 @@ LICENSE=GPL-3 RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq SLOT=0 SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=dee50558d10e75ff9e96f4c3f177c55f diff --git a/metadata/md5-cache/sci-biology/mcl-08.312 b/metadata/md5-cache/sci-biology/mcl-08.312 index b8cac900a307..784e56c4c15e 100644 --- a/metadata/md5-cache/sci-biology/mcl-08.312 +++ b/metadata/md5-cache/sci-biology/mcl-08.312 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A Markov Cluster Algorithm implementation EAPI=4 HOMEPAGE=http://micans.org/mcl/ @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-08-312.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=24cf3aad7375304f2721048d2f76b5f1 diff --git a/metadata/md5-cache/sci-biology/mcl-12.135 b/metadata/md5-cache/sci-biology/mcl-12.135 index e7db8170fe90..0afacf0ef869 100644 --- a/metadata/md5-cache/sci-biology/mcl-12.135 +++ b/metadata/md5-cache/sci-biology/mcl-12.135 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A Markov Cluster Algorithm implementation EAPI=4 HOMEPAGE=http://micans.org/mcl/ @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-12-135.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=24cf3aad7375304f2721048d2f76b5f1 diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137 index 790770c8321f..abe2da879da1 100644 --- a/metadata/md5-cache/sci-biology/mcl-14.137 +++ b/metadata/md5-cache/sci-biology/mcl-14.137 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare -DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A Markov Cluster Algorithm implementation EAPI=6 HOMEPAGE=http://micans.org/mcl/ @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=3429c68609b6c70e047d577379f68f97 diff --git a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 b/metadata/md5-cache/sci-biology/meme-4.11.2_p2 index 7f42f3fc5a68..a1b5279315ad 100644 --- a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 +++ b/metadata/md5-cache/sci-biology/meme-4.11.2_p2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare setup test -DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=The MEME/MAST system - Motif discovery and search EAPI=6 HOMEPAGE=http://meme-suite.org/tools/meme @@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://meme-suite.org/meme-software/4.11.2/meme_4.11.2.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 estack 43ddf5aaffa7a8d0482df54d25a66a1f libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e perl-functions 01e8c68d5a528bbcda4d3c60205983df python-single-r1 26fdbe5e685d53f67303a3a43d9e4848 python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec versionator 26ca8a8bd95d6a74122c08ba98a4ee72 +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 estack 43ddf5aaffa7a8d0482df54d25a66a1f libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e perl-functions 01e8c68d5a528bbcda4d3c60205983df python-single-r1 26fdbe5e685d53f67303a3a43d9e4848 python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=a4080439675628436c06de8db9f59c6e diff --git a/metadata/md5-cache/sci-biology/mira-4.0.2 b/metadata/md5-cache/sci-biology/mira-4.0.2 index dcb5fbee46e0..159ef61c7035 100644 --- a/metadata/md5-cache/sci-biology/mira-4.0.2 +++ b/metadata/md5-cache/sci-biology/mira-4.0.2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install postinst prepare -DEPEND=dev-libs/boost[threads] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-libs/boost[threads] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Illumina EAPI=6 HOMEPAGE=http://www.chevreux.org/projects_mira.html @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-libs/boost[threads] dev-util/google-perftools SLOT=0 SRC_URI=https://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira-4.0.2.tar.bz2 mirror://sourceforge/mira-assembler/mira_3rdparty_06-07-2012.tar.bz2 -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=4e9fc8a550640febbc0b71544c16618c diff --git a/metadata/md5-cache/sci-biology/samtools-1.5 b/metadata/md5-cache/sci-biology/samtools-1.5 index d41144e1844b..2116111b822c 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.5 +++ b/metadata/md5-cache/sci-biology/samtools-1.5 @@ -1,5 +1,5 @@ DEFINED_PHASES=install prepare test -DEPEND=dev-lang/perl =sci-libs/htslib-1.5* sys-libs/ncurses:0= sys-libs/zlib python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-lang/perl =sci-libs/htslib-1.5* sys-libs/ncurses:0= sys-libs/zlib python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats EAPI=6 HOMEPAGE=http://www.htslib.org/ @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl =sci-libs/htslib-1.5* sys-libs/ncurses:0= sys-libs/zlib py REQUIRED_USE=|| ( python_targets_python2_7 ) SLOT=0 SRC_URI=mirror://sourceforge/samtools/samtools-1.5.tar.bz2 -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multibuild 35719a9cd25ec71ee49c966f6868454c multilib 97f470f374f2e94ccab04a2fb21d811e python-r1 c66af00ffb980e8eb1c961d5e63597fe python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multibuild 35719a9cd25ec71ee49c966f6868454c multilib 97f470f374f2e94ccab04a2fb21d811e python-r1 c66af00ffb980e8eb1c961d5e63597fe python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=8d92b4a814f62eab87bac2be22c2470c diff --git a/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 b/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 index 176df067b168..bbd106f175f8 100644 --- a/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 +++ b/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=dev-libs/boost:= >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dev-libs/boost:= >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A library and API for manipulating large SNP datasets EAPI=6 HOMEPAGE=http://www.birc.au.dk/~mailund/SNPFile/ @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=dev-libs/boost:= SLOT=0 SRC_URI=http://www.birc.au.dk/~mailund/SNPFile/download/snpfile-2.0.1.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=7c64014825a157024d03614c037abcfc diff --git a/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 b/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 index 35cbf3851993..203e1f27baee 100644 --- a/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 +++ b/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install postinst prepare setup -DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] dev-python/intervaltree[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-python/sortedcontainers[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] dev-python/intervaltree[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-python/sortedcontainers[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2 EAPI=6 HOMEPAGE=https://ccb.jhu.edu/software/tophat/ @@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 26fdbe5e685d53f67303a3a43d9e4848 python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 26fdbe5e685d53f67303a3a43d9e4848 python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=efee8069c83c578acac8e57b429ad985 diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 index 1d7bb520b0c2..9e5334023285 100644 --- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 +++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=x11-libs/wxGTK:3.0[X] >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=x11-libs/wxGTK:3.0[X] >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A phylogenetic tree viewer EAPI=5 HOMEPAGE=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/ @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=x11-libs/wxGTK:3.0[X] SLOT=0 SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wxwidgets 04e063b0eff26daaea83d859dd9d6e05 +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wxwidgets 04e063b0eff26daaea83d859dd9d6e05 _md5_=ce129f3e61a849cfd3654e5a9fa4b17a diff --git a/metadata/md5-cache/sci-biology/vaal-46233-r2 b/metadata/md5-cache/sci-biology/vaal-46233-r2 index 73b5ca039c93..9bff32ce95b5 100644 --- a/metadata/md5-cache/sci-biology/vaal-46233-r2 +++ b/metadata/md5-cache/sci-biology/vaal-46233-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare -DEPEND=!sci-biology/allpaths !sci-biology/allpathslg dev-libs/boost >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=!sci-biology/allpaths !sci-biology/allpathslg dev-libs/boost >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Algorithm for detecting SNPs, indels, and other polymorphisms EAPI=6 HOMEPAGE=http://www.broadinstitute.org/science/programs/genome-biology/crd/ @@ -9,5 +9,5 @@ LICENSE=Whitehead-MIT RDEPEND=!sci-biology/allpaths !sci-biology/allpathslg SLOT=0 SRC_URI=ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/vaal-46233.tar.gz ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc https://dev.gentoo.org/~mgorny/dist/vaal-46233_remove-namespace-std.patch.bz2 -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=7ca22b906d6f7e7c4fe2f2f35eedfb6b diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.14 b/metadata/md5-cache/sci-biology/vcftools-0.1.14 index 57ab96138f63..2c8ad6664dff 100644 --- a/metadata/md5-cache/sci-biology/vcftools-0.1.14 +++ b/metadata/md5-cache/sci-biology/vcftools-0.1.14 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare -DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Tools for working with VCF (Variant Call Format) files EAPI=6 HOMEPAGE=http://vcftools.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=LGPL-3 RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) SLOT=0 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e perl-functions 01e8c68d5a528bbcda4d3c60205983df preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e perl-functions 01e8c68d5a528bbcda4d3c60205983df preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs fa02994d0beba88681127d93da4411ec vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=c40169dc993f3444a3e2f41ad69a920d diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 index d22cc20e395d..2c7f660ed5c5 100644 --- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 +++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test unpack -DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)] +DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)] DESCRIPTION=RNA secondary structure prediction and comparison EAPI=5 HOMEPAGE=http://www.tbi.univie.ac.at/~ivo/RNA/ @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( REQUIRED_USE=python? ( || ( python_targets_python2_7 ) ) SLOT=0 SRC_URI=http://www.tbi.univie.ac.at/~ronny/RNA/ViennaRNA-2.1.1.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 distutils-r1 63fea93ca1cc4fdc5fa2247afc4e3a15 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multibuild 35719a9cd25ec71ee49c966f6868454c multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 c66af00ffb980e8eb1c961d5e63597fe python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 distutils-r1 63fea93ca1cc4fdc5fa2247afc4e3a15 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multibuild 35719a9cd25ec71ee49c966f6868454c multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 c66af00ffb980e8eb1c961d5e63597fe python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=1e58c830b49ced05ae9960fcc2dead13 diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 index e17b7428b55b..ed1e33f4a54b 100644 --- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 +++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 @@ -1,5 +1,5 @@ DEFINED_PHASES=compile configure install prepare test unpack -DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)] +DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)] DESCRIPTION=RNA secondary structure prediction and comparison EAPI=5 HOMEPAGE=http://www.tbi.univie.ac.at/~ivo/RNA/ @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( REQUIRED_USE=python? ( || ( python_targets_python2_7 ) ) SLOT=0 SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 distutils-r1 63fea93ca1cc4fdc5fa2247afc4e3a15 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multibuild 35719a9cd25ec71ee49c966f6868454c multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 c66af00ffb980e8eb1c961d5e63597fe python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 distutils-r1 63fea93ca1cc4fdc5fa2247afc4e3a15 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multibuild 35719a9cd25ec71ee49c966f6868454c multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 c66af00ffb980e8eb1c961d5e63597fe python-utils-r1 3b2e27bcad216823f5a67d01d28b53a4 toolchain-funcs fa02994d0beba88681127d93da4411ec unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=b2a6486af275e75c6365ab7eeba1e0bd diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r2 b/metadata/md5-cache/sci-biology/yass-1.14-r2 index 373b73c71abd..46b1739bbcc5 100644 --- a/metadata/md5-cache/sci-biology/yass-1.14-r2 +++ b/metadata/md5-cache/sci-biology/yass-1.14-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare -DEPEND=dmalloc? ( dev-libs/dmalloc ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=dmalloc? ( dev-libs/dmalloc ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Genomic similarity search with multiple transition constrained spaced seeds EAPI=6 HOMEPAGE=http://bioinfo.lifl.fr/yass/ @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dmalloc? ( dev-libs/dmalloc ) SLOT=0 SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec +_eclasses_=autotools 02d4d2fc8dba08b060de8f3afd46b409 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs fa02994d0beba88681127d93da4411ec _md5_=3a4ba9b4e7b8efec51cfc79d261fefd3 |