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-rw-r--r--metadata/md5-cache/sci-biology/HTSeq-2.0.24
-rw-r--r--metadata/md5-cache/sci-biology/HTSeq-99994
-rw-r--r--metadata/md5-cache/sci-biology/Manifest.gzbin21710 -> 21714 bytes
-rw-r--r--metadata/md5-cache/sci-biology/biopandas-0.2.74
-rw-r--r--metadata/md5-cache/sci-biology/biopython-1.794
-rw-r--r--metadata/md5-cache/sci-biology/pysam-0.19.14
6 files changed, 10 insertions, 10 deletions
diff --git a/metadata/md5-cache/sci-biology/HTSeq-2.0.2 b/metadata/md5-cache/sci-biology/HTSeq-2.0.2
index 6f8f11316a56..b46a5b61f598 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-2.0.2
+++ b/metadata/md5-cache/sci-biology/HTSeq-2.0.2
@@ -1,4 +1,4 @@
-BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) >=dev-python/setuptools-65.3.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
DEFINED_PHASES=compile configure install prepare test
DEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] )
DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files
@@ -13,5 +13,5 @@ REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targe
RESTRICT=!test? ( test ) !test? ( test )
SLOT=0
SRC_URI=https://github.com/htseq/htseq/archive/release_2.0.2.tar.gz -> HTSeq-2.0.2.gh.tar.gz
-_eclasses_=distutils-r1 e3b0f72d558eb613ff83262d22cbf887 flag-o-matic 29a755b1291d64133634d80b0328f153 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 1542e649be915f43f6908a9e93909961
+_eclasses_=distutils-r1 8c1ceb6b71a65547b0ea7bc901d906cb flag-o-matic 29a755b1291d64133634d80b0328f153 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 1542e649be915f43f6908a9e93909961
_md5_=eaf0038e987d5268b687db2978b9cf87
diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999
index 63721cacf707..5a5e93eebc8b 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-9999
+++ b/metadata/md5-cache/sci-biology/HTSeq-9999
@@ -1,4 +1,4 @@
-BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-vcs/git-1.8.2.1[curl]
+BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) >=dev-python/setuptools-65.3.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-vcs/git-1.8.2.1[curl]
DEFINED_PHASES=compile configure install prepare test unpack
DEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] )
DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files
@@ -12,5 +12,5 @@ RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-
REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 )
RESTRICT=!test? ( test ) !test? ( test )
SLOT=0
-_eclasses_=distutils-r1 e3b0f72d558eb613ff83262d22cbf887 flag-o-matic 29a755b1291d64133634d80b0328f153 git-r3 b9ac6f96d2a88edb5b351df634dc5e53 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 1542e649be915f43f6908a9e93909961
+_eclasses_=distutils-r1 8c1ceb6b71a65547b0ea7bc901d906cb flag-o-matic 29a755b1291d64133634d80b0328f153 git-r3 b9ac6f96d2a88edb5b351df634dc5e53 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 1542e649be915f43f6908a9e93909961
_md5_=eaf0038e987d5268b687db2978b9cf87
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index aab3798ce88a..e14b0d5642ba 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
Binary files differ
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.7 b/metadata/md5-cache/sci-biology/biopandas-0.2.7
index ed6913c66578..8401a2d4a60e 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.2.7
+++ b/metadata/md5-cache/sci-biology/biopandas-0.2.7
@@ -1,4 +1,4 @@
-BDEPEND=test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/nose-1.3.7_p20211111_p1-r1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+BDEPEND=test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/nose-1.3.7_p20211111_p1-r1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) >=dev-python/setuptools-65.3.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
DEFINED_PHASES=compile configure install prepare test
DESCRIPTION=Molecular Structures in Pandas DataFrames
EAPI=8
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targe
RESTRICT=!test? ( test ) !test? ( test )
SLOT=0
SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.7.tar.gz
-_eclasses_=distutils-r1 e3b0f72d558eb613ff83262d22cbf887 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 1542e649be915f43f6908a9e93909961
+_eclasses_=distutils-r1 8c1ceb6b71a65547b0ea7bc901d906cb multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 1542e649be915f43f6908a9e93909961
_md5_=493935812e002415b6fce30c9e9dc8f8
diff --git a/metadata/md5-cache/sci-biology/biopython-1.79 b/metadata/md5-cache/sci-biology/biopython-1.79
index 6273cccdbfee..e52ff9e589e3 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.79
+++ b/metadata/md5-cache/sci-biology/biopython-1.79
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/flex python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+BDEPEND=sys-devel/flex python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) >=dev-python/setuptools-65.3.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
DEFINED_PHASES=compile configure install postinst prepare test
DEPEND=dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/rdflib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pygraphviz[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pydot[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
DESCRIPTION=Python modules for computational molecular biology
@@ -12,5 +12,5 @@ RDEPEND=dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python
REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 )
SLOT=0
SRC_URI=mirror://pypi/b/biopython/biopython-1.79.tar.gz
-_eclasses_=distutils-r1 e3b0f72d558eb613ff83262d22cbf887 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 optfeature 1a2157392a869265b2afcb63a26c12ac python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 1542e649be915f43f6908a9e93909961
+_eclasses_=distutils-r1 8c1ceb6b71a65547b0ea7bc901d906cb multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 optfeature 1a2157392a869265b2afcb63a26c12ac python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 1542e649be915f43f6908a9e93909961
_md5_=89d2124a2c9f76eda9c399f23c96a8b8
diff --git a/metadata/md5-cache/sci-biology/pysam-0.19.1 b/metadata/md5-cache/sci-biology/pysam-0.19.1
index dfa2109023ed..68422099c3de 100644
--- a/metadata/md5-cache/sci-biology/pysam-0.19.1
+++ b/metadata/md5-cache/sci-biology/pysam-0.19.1
@@ -1,4 +1,4 @@
-BDEPEND=test? ( =sci-biology/bcftools-1.15.1* =sci-biology/samtools-1.15.1* ) test? ( =sci-libs/htslib-1.15.1*:= >=dev-python/pytest-7.1.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.0_beta4:3.11 ) >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
+BDEPEND=test? ( =sci-biology/bcftools-1.15.1* =sci-biology/samtools-1.15.1* ) test? ( =sci-libs/htslib-1.15.1*:= >=dev-python/pytest-7.1.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.0_beta4:3.11 ) >=dev-python/setuptools-65.3.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
DEFINED_PHASES=compile configure install prepare test
DEPEND==sci-libs/htslib-1.15.1*:= dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format
@@ -13,5 +13,5 @@ REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targe
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.19.1.tar.gz -> pysam-0.19.1.gh.tar.gz
-_eclasses_=distutils-r1 e3b0f72d558eb613ff83262d22cbf887 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 1542e649be915f43f6908a9e93909961
+_eclasses_=distutils-r1 8c1ceb6b71a65547b0ea7bc901d906cb multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 1542e649be915f43f6908a9e93909961
_md5_=baed35c86cd8709cd139815786cd17ac
generated by cgit v1.2.3 (git 2.25.1) at 2024-07-02 10:41:00 +0000