diff options
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r-- | metadata/md5-cache/sci-biology/Manifest.gz | bin | 23421 -> 23427 bytes | |||
-rw-r--r-- | metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 | 10 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/plink-1.90_pre140514 | 7 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/velvet-1.2.10 | 8 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/wise-2.4.0_alpha | 13 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/wise-2.4.0_alpha-r1 | 14 |
6 files changed, 27 insertions, 25 deletions
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz Binary files differindex 67ca65a6840b..6739be6faa79 100644 --- a/metadata/md5-cache/sci-biology/Manifest.gz +++ b/metadata/md5-cache/sci-biology/Manifest.gz diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 index 93f28bb858af..e0583c8b4612 100644 --- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 +++ b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 @@ -1,13 +1,13 @@ DEFINED_PHASES=compile install prepare -DEPEND=sys-libs/ncurses:0= mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0= ) +DEPEND=sys-libs/ncurses:= mpi? ( virtual/mpi ) readline? ( sys-libs/readline:= ) DESCRIPTION=Bayesian Inference of Phylogeny -EAPI=5 +EAPI=8 HOMEPAGE=http://mrbayes.csit.fsu.edu/ IUSE=debug mpi readline KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris LICENSE=GPL-2 -RDEPEND=sys-libs/ncurses:0= mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0= ) +RDEPEND=sys-libs/ncurses:= mpi? ( virtual/mpi ) readline? ( sys-libs/readline:= ) SLOT=0 SRC_URI=mirror://sourceforge/mrbayes/mrbayes-3.1.2.tar.gz -_eclasses_=epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 multilib 97566c1a256d07b00848aa767e38a352 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa -_md5_=c97a54ea522e76af98a9b4e7e29e79cc +_eclasses_=multilib 97566c1a256d07b00848aa767e38a352 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa +_md5_=934b64005f56b5809a9cbbdf69aab63b diff --git a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 b/metadata/md5-cache/sci-biology/plink-1.90_pre140514 index 4b0c15f37118..f9630e2f016b 100644 --- a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 +++ b/metadata/md5-cache/sci-biology/plink-1.90_pre140514 @@ -1,7 +1,8 @@ +BDEPEND=app-arch/unzip virtual/pkgconfig DEFINED_PHASES=compile install prepare -DEPEND=sys-libs/zlib virtual/cblas virtual/lapack app-arch/unzip virtual/pkgconfig +DEPEND=sys-libs/zlib virtual/cblas virtual/lapack DESCRIPTION=Whole genome association analysis toolset -EAPI=5 +EAPI=8 HOMEPAGE=http://pngu.mgh.harvard.edu/~purcell/plink/ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 @@ -9,4 +10,4 @@ RDEPEND=sys-libs/zlib virtual/cblas virtual/lapack SLOT=0 SRC_URI=http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> plink-1.90_pre140514.zip _eclasses_=multilib 97566c1a256d07b00848aa767e38a352 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa -_md5_=e1f50da3f99cd26238e4ef37a7de379a +_md5_=e839f5daef081dde4b2d3e0417010738 diff --git a/metadata/md5-cache/sci-biology/velvet-1.2.10 b/metadata/md5-cache/sci-biology/velvet-1.2.10 index eec750f367f6..6f71b25cdea9 100644 --- a/metadata/md5-cache/sci-biology/velvet-1.2.10 +++ b/metadata/md5-cache/sci-biology/velvet-1.2.10 @@ -1,12 +1,12 @@ +BDEPEND=doc? ( virtual/latex-base ) DEFINED_PHASES=compile install prepare test -DEPEND=doc? ( virtual/latex-base ) DESCRIPTION=A sequence assembler for very short reads -EAPI=5 +EAPI=8 HOMEPAGE=https://www.ebi.ac.uk/~zerbino/velvet/ IUSE=doc openmp KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib 97566c1a256d07b00848aa767e38a352 preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa vcs-clean b690a7e9b6c497cf59326a7545df4283 wrapper 4251d4c84c25f59094fd557e0063a974 -_md5_=b07b48444158719f00b415b6f8b8e6a1 +_eclasses_=flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 multilib 97566c1a256d07b00848aa767e38a352 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa +_md5_=f48eb0348a1ac91d41dde22d3ced2ea1 diff --git a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha deleted file mode 100644 index 173af71c9d6d..000000000000 --- a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha +++ /dev/null @@ -1,13 +0,0 @@ -DEFINED_PHASES=compile install prepare test -DEPEND=~sci-biology/hmmer-2.3.2 app-shells/tcsh dev-lang/perl virtual/latex-base -DESCRIPTION=Intelligent algorithms for DNA searches -EAPI=5 -HOMEPAGE=http://www.ebi.ac.uk/Wise2/ -IUSE=doc static-libs -KEYWORDS=~amd64 ~x86 -LICENSE=BSD -RDEPEND=~sci-biology/hmmer-2.3.2 -SLOT=0 -SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/wise2/wise2.4.0alpha.tar.gz https://dev.gentoo.org/~mgorny/dist/wise-2.4.0_alpha-patchset.tar.bz2 -_eclasses_=epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 multilib 97566c1a256d07b00848aa767e38a352 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa versionator d3fb3ba33acc3bbbdc4d7970227c100d -_md5_=d5566134a062c60e1c2223a1b1283862 diff --git a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha-r1 b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha-r1 new file mode 100644 index 000000000000..31ec4dfd8d82 --- /dev/null +++ b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha-r1 @@ -0,0 +1,14 @@ +BDEPEND=app-shells/tcsh dev-lang/perl virtual/latex-base +DEFINED_PHASES=compile install prepare test +DEPEND=~sci-biology/hmmer-2.3.2 +DESCRIPTION=Intelligent algorithms for DNA searches +EAPI=8 +HOMEPAGE=http://www.ebi.ac.uk/Wise2/ +IUSE=doc +KEYWORDS=~amd64 ~x86 +LICENSE=BSD +RDEPEND=~sci-biology/hmmer-2.3.2 +SLOT=0 +SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/wise2/wise2.4.0alpha.tar.gz https://dev.gentoo.org/~mgorny/dist/wise-2.4.0_alpha-patchset.tar.bz2 +_eclasses_=multilib 97566c1a256d07b00848aa767e38a352 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa +_md5_=34f9a1f8b8f239e402200b9b5cb4f3cc |