diff options
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r-- | metadata/md5-cache/sci-biology/HTSeq-2.0.2 | 14 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/HTSeq-9999 | 14 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/Manifest.gz | bin | 21883 -> 21880 bytes | |||
-rw-r--r-- | metadata/md5-cache/sci-biology/bcftools-1.15.1 | 14 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/bcftools-1.16 | 14 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/bedtools-2.30.0 | 6 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/biopandas-0.2.7 | 12 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/biopython-1.79 | 14 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/bowtie-2.4.4 | 12 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/pysam-0.19.1 | 14 |
10 files changed, 57 insertions, 57 deletions
diff --git a/metadata/md5-cache/sci-biology/HTSeq-2.0.2 b/metadata/md5-cache/sci-biology/HTSeq-2.0.2 index 02137392688e..97f6590ba7b5 100644 --- a/metadata/md5-cache/sci-biology/HTSeq-2.0.2 +++ b/metadata/md5-cache/sci-biology/HTSeq-2.0.2 @@ -1,17 +1,17 @@ -BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] +BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.3[python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?] DEFINED_PHASES=compile configure install prepare test -DEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) +DEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/matplotlib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files EAPI=8 HOMEPAGE=https://htseq.readthedocs.io/ INHERIT=distutils-r1 flag-o-matic -IUSE=test test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 +IUSE=test test python_targets_python3_9 python_targets_python3_10 KEYWORDS=~amd64 LICENSE=GPL-3+ -RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) -REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 ) +RDEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) +REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 ) RESTRICT=!test? ( test ) !test? ( test ) SLOT=0 SRC_URI=https://github.com/htseq/htseq/archive/release_2.0.2.tar.gz -> HTSeq-2.0.2.gh.tar.gz -_eclasses_=distutils-r1 dcd5f48510105eb95e550ab968147365 flag-o-matic 69394e25812406faa1f90edaf4969395 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 38c85b725d0467e51954ea921b6c104b out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 666be58f658d6b32affe30f80e39a49e python-utils-r1 7870d60e8b98856ef02d33397fd5ec0f toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f -_md5_=eaf0038e987d5268b687db2978b9cf87 +_eclasses_=distutils-r1 dcd5f48510105eb95e550ab968147365 flag-o-matic 69394e25812406faa1f90edaf4969395 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 38c85b725d0467e51954ea921b6c104b out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 666be58f658d6b32affe30f80e39a49e python-utils-r1 a1a985ddd8795a8634b4b7f820b93143 toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f +_md5_=a4190a44788cf7ade175eecc1b463758 diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999 index aa244bf6661b..06d1be51cdef 100644 --- a/metadata/md5-cache/sci-biology/HTSeq-9999 +++ b/metadata/md5-cache/sci-biology/HTSeq-9999 @@ -1,16 +1,16 @@ -BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-vcs/git-1.8.2.1[curl] +BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.3[python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-vcs/git-1.8.2.1[curl] DEFINED_PHASES=compile configure install prepare test unpack -DEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) +DEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/matplotlib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files EAPI=8 HOMEPAGE=https://htseq.readthedocs.io/ INHERIT=distutils-r1 flag-o-matic git-r3 -IUSE=test test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 +IUSE=test test python_targets_python3_9 python_targets_python3_10 LICENSE=GPL-3+ PROPERTIES=live -RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) -REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 ) +RDEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) +REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 ) RESTRICT=!test? ( test ) !test? ( test ) SLOT=0 -_eclasses_=distutils-r1 dcd5f48510105eb95e550ab968147365 flag-o-matic 69394e25812406faa1f90edaf4969395 git-r3 2347f8fe2d392b2a091191f94be37e6f multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 38c85b725d0467e51954ea921b6c104b out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 666be58f658d6b32affe30f80e39a49e python-utils-r1 7870d60e8b98856ef02d33397fd5ec0f toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f -_md5_=eaf0038e987d5268b687db2978b9cf87 +_eclasses_=distutils-r1 dcd5f48510105eb95e550ab968147365 flag-o-matic 69394e25812406faa1f90edaf4969395 git-r3 2347f8fe2d392b2a091191f94be37e6f multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 38c85b725d0467e51954ea921b6c104b out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 666be58f658d6b32affe30f80e39a49e python-utils-r1 a1a985ddd8795a8634b4b7f820b93143 toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f +_md5_=a4190a44788cf7ade175eecc1b463758 diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz Binary files differindex fc7ad971c97f..1ab32e93ae0f 100644 --- a/metadata/md5-cache/sci-biology/Manifest.gz +++ b/metadata/md5-cache/sci-biology/Manifest.gz diff --git a/metadata/md5-cache/sci-biology/bcftools-1.15.1 b/metadata/md5-cache/sci-biology/bcftools-1.15.1 index b74ce72c01bd..f2b202a77bea 100644 --- a/metadata/md5-cache/sci-biology/bcftools-1.15.1 +++ b/metadata/md5-cache/sci-biology/bcftools-1.15.1 @@ -1,16 +1,16 @@ -BDEPEND=python_single_target_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) +BDEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) DEFINED_PHASES=configure prepare setup -DEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) +DEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) DESCRIPTION=Utilities for variant calling and manipulating VCF and BCF files EAPI=8 HOMEPAGE=http://www.htslib.org INHERIT=python-single-r1 -IUSE=python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 +IUSE=python_single_target_python3_9 python_single_target_python3_10 KEYWORDS=~amd64 ~x86 LICENSE=MIT -RDEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) -REQUIRED_USE=^^ ( python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 ) +RDEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) +REQUIRED_USE=^^ ( python_single_target_python3_9 python_single_target_python3_10 ) SLOT=0 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.15.1/bcftools-1.15.1.tar.bz2 -_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 7870d60e8b98856ef02d33397fd5ec0f toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f -_md5_=a991b200539f7c26af7f584fe62e90f5 +_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 a1a985ddd8795a8634b4b7f820b93143 toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f +_md5_=7742e2f0c1176dfee3d3c8236b98c037 diff --git a/metadata/md5-cache/sci-biology/bcftools-1.16 b/metadata/md5-cache/sci-biology/bcftools-1.16 index f5a4fbd6387e..183890e0c40c 100644 --- a/metadata/md5-cache/sci-biology/bcftools-1.16 +++ b/metadata/md5-cache/sci-biology/bcftools-1.16 @@ -1,16 +1,16 @@ -BDEPEND=python_single_target_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1:3.11 ) +BDEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1:3.11 ) DEFINED_PHASES=configure prepare setup -DEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.16*:= sys-libs/zlib python_single_target_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1:3.11 ) +DEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.16*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1:3.11 ) DESCRIPTION=Utilities for variant calling and manipulating VCF and BCF files EAPI=8 HOMEPAGE=http://www.htslib.org INHERIT=python-single-r1 -IUSE=python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 python_single_target_python3_11 +IUSE=python_single_target_python3_9 python_single_target_python3_10 python_single_target_python3_11 KEYWORDS=~amd64 ~x86 LICENSE=MIT -RDEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.16*:= sys-libs/zlib python_single_target_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1:3.11 ) -REQUIRED_USE=^^ ( python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 python_single_target_python3_11 ) +RDEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.16*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1:3.11 ) +REQUIRED_USE=^^ ( python_single_target_python3_9 python_single_target_python3_10 python_single_target_python3_11 ) SLOT=0 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.16/bcftools-1.16.tar.bz2 -_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 7870d60e8b98856ef02d33397fd5ec0f toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f -_md5_=6db47fe6dd9b7f6dae282c829dd08dbd +_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 a1a985ddd8795a8634b4b7f820b93143 toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f +_md5_=5271780ace94107aae357a985f191e14 diff --git a/metadata/md5-cache/sci-biology/bedtools-2.30.0 b/metadata/md5-cache/sci-biology/bedtools-2.30.0 index 059dc8a4cf88..5c7a21ad3186 100644 --- a/metadata/md5-cache/sci-biology/bedtools-2.30.0 +++ b/metadata/md5-cache/sci-biology/bedtools-2.30.0 @@ -1,4 +1,4 @@ -BDEPEND=|| ( >=dev-lang/python-3.11.1:3.11 >=dev-lang/python-3.10.9:3.10 >=dev-lang/python-3.9.16:3.9 >=dev-lang/python-3.8.16:3.8 ) test? ( >=sci-biology/samtools-1.10:0 ) +BDEPEND=|| ( >=dev-lang/python-3.11.1:3.11 >=dev-lang/python-3.10.9:3.10 >=dev-lang/python-3.9.16:3.9 ) test? ( >=sci-biology/samtools-1.10:0 ) DEFINED_PHASES=configure install setup DEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib DESCRIPTION=Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats @@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools-2.30.0.tar.gz -_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-any-r1 d2955aaac8daaaa69fcc6dc93ed19f29 python-utils-r1 7870d60e8b98856ef02d33397fd5ec0f toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f -_md5_=5f18ddd41275559b1783fee4a2405f1f +_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-any-r1 d2955aaac8daaaa69fcc6dc93ed19f29 python-utils-r1 a1a985ddd8795a8634b4b7f820b93143 toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f +_md5_=a8923ba46d6cb3a1840954c1b014568c diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.7 b/metadata/md5-cache/sci-biology/biopandas-0.2.7 index 721cf16f2c80..bde7ee1b7687 100644 --- a/metadata/md5-cache/sci-biology/biopandas-0.2.7 +++ b/metadata/md5-cache/sci-biology/biopandas-0.2.7 @@ -1,16 +1,16 @@ -BDEPEND=test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/nose-1.3.7_p20221026[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] +BDEPEND=test? ( dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/nose-1.3.7_p20221026[python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?] DEFINED_PHASES=compile configure install prepare test DESCRIPTION=Molecular Structures in Pandas DataFrames EAPI=8 HOMEPAGE=https://rasbt.github.io/biopandas/ https://github.com/rasbt/biopandas https://pypi.org/project/BioPandas/ INHERIT=distutils-r1 -IUSE=test test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 +IUSE=test test python_targets_python3_9 python_targets_python3_10 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=BSD -RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) -REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 ) +RDEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) +REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 ) RESTRICT=!test? ( test ) !test? ( test ) SLOT=0 SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.7.tar.gz -_eclasses_=distutils-r1 dcd5f48510105eb95e550ab968147365 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 38c85b725d0467e51954ea921b6c104b out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 666be58f658d6b32affe30f80e39a49e python-utils-r1 7870d60e8b98856ef02d33397fd5ec0f toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f -_md5_=493935812e002415b6fce30c9e9dc8f8 +_eclasses_=distutils-r1 dcd5f48510105eb95e550ab968147365 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 38c85b725d0467e51954ea921b6c104b out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 666be58f658d6b32affe30f80e39a49e python-utils-r1 a1a985ddd8795a8634b4b7f820b93143 toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f +_md5_=90f9103bd8f00cfb13d8821454edb4b8 diff --git a/metadata/md5-cache/sci-biology/biopython-1.79 b/metadata/md5-cache/sci-biology/biopython-1.79 index 1f74f80535b3..721df3f77937 100644 --- a/metadata/md5-cache/sci-biology/biopython-1.79 +++ b/metadata/md5-cache/sci-biology/biopython-1.79 @@ -1,16 +1,16 @@ -BDEPEND=sys-devel/flex python_targets_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] +BDEPEND=sys-devel/flex python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?] DEFINED_PHASES=compile configure install postinst prepare test -DEPEND=dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/rdflib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pygraphviz[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pydot[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] +DEPEND=dev-python/matplotlib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/rdflib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pygraphviz[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pydot[python_targets_python3_9(-)?,python_targets_python3_10(-)?] DESCRIPTION=Python modules for computational molecular biology EAPI=8 HOMEPAGE=https://www.biopython.org/ https://pypi.org/project/biopython/ INHERIT=distutils-r1 optfeature -IUSE=python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 +IUSE=python_targets_python3_9 python_targets_python3_10 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=HPND -RDEPEND=dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/rdflib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pygraphviz[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pydot[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) -REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 ) +RDEPEND=dev-python/matplotlib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/rdflib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pygraphviz[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pydot[python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) +REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 ) SLOT=0 SRC_URI=mirror://pypi/b/biopython/biopython-1.79.tar.gz -_eclasses_=distutils-r1 dcd5f48510105eb95e550ab968147365 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 38c85b725d0467e51954ea921b6c104b optfeature 1a2157392a869265b2afcb63a26c12ac out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 666be58f658d6b32affe30f80e39a49e python-utils-r1 7870d60e8b98856ef02d33397fd5ec0f toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f -_md5_=89d2124a2c9f76eda9c399f23c96a8b8 +_eclasses_=distutils-r1 dcd5f48510105eb95e550ab968147365 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 38c85b725d0467e51954ea921b6c104b optfeature 1a2157392a869265b2afcb63a26c12ac out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 666be58f658d6b32affe30f80e39a49e python-utils-r1 a1a985ddd8795a8634b4b7f820b93143 toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f +_md5_=6074a70b897177a12216367dcd1352a1 diff --git a/metadata/md5-cache/sci-biology/bowtie-2.4.4 b/metadata/md5-cache/sci-biology/bowtie-2.4.4 index 1ad723653bc9..f9458d456ab1 100644 --- a/metadata/md5-cache/sci-biology/bowtie-2.4.4 +++ b/metadata/md5-cache/sci-biology/bowtie-2.4.4 @@ -1,16 +1,16 @@ BDEPEND=app-arch/unzip DEFINED_PHASES=compile install setup -DEPEND=python_single_target_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) dev-lang/perl sys-libs/zlib +DEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) dev-lang/perl sys-libs/zlib DESCRIPTION=Popular short read aligner for Next-generation sequencing data EAPI=8 HOMEPAGE=http://bowtie-bio.sourceforge.net/bowtie2/ INHERIT=python-single-r1 toolchain-funcs -IUSE=cpu_flags_x86_sse2 examples python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 +IUSE=cpu_flags_x86_sse2 examples python_single_target_python3_9 python_single_target_python3_10 KEYWORDS=~amd64 ~x86 LICENSE=GPL-3 -RDEPEND=python_single_target_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) dev-lang/perl sys-libs/zlib -REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 ) +RDEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) dev-lang/perl sys-libs/zlib +REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_9 python_single_target_python3_10 ) SLOT=2 SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.4.4/bowtie2-2.4.4-source.zip -_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 7870d60e8b98856ef02d33397fd5ec0f toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f -_md5_=a169406c93e64d9cae6cbb8ad262f62b +_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 a1a985ddd8795a8634b4b7f820b93143 toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f +_md5_=7e782380091eb080dc11ed573335cbf2 diff --git a/metadata/md5-cache/sci-biology/pysam-0.19.1 b/metadata/md5-cache/sci-biology/pysam-0.19.1 index e37badaa004f..85477d5a75ce 100644 --- a/metadata/md5-cache/sci-biology/pysam-0.19.1 +++ b/metadata/md5-cache/sci-biology/pysam-0.19.1 @@ -1,17 +1,17 @@ -BDEPEND=test? ( =sci-biology/bcftools-1.15.1* =sci-biology/samtools-1.15.1* ) test? ( =sci-libs/htslib-1.15.1*:= >=dev-python/pytest-7.1.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1:3.11 ) >=dev-python/setuptools-65.5.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] +BDEPEND=test? ( =sci-biology/bcftools-1.15.1* =sci-biology/samtools-1.15.1* ) test? ( =sci-libs/htslib-1.15.1*:= >=dev-python/pytest-7.1.3[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1:3.11 ) >=dev-python/setuptools-65.5.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] DEFINED_PHASES=compile configure install prepare test -DEPEND==sci-libs/htslib-1.15.1*:= dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] +DEPEND==sci-libs/htslib-1.15.1*:= dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format EAPI=8 HOMEPAGE=https://github.com/pysam-developers/pysam https://pypi.org/project/pysam/ INHERIT=distutils-r1 -IUSE=test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 +IUSE=test python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 KEYWORDS=~amd64 ~x86 LICENSE=MIT -RDEPEND==sci-libs/htslib-1.15.1*:= python_targets_python3_8? ( >=dev-lang/python-3.8.16:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1:3.11 ) -REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 ) +RDEPEND==sci-libs/htslib-1.15.1*:= python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1:3.11 ) +REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.19.1.tar.gz -> pysam-0.19.1.gh.tar.gz -_eclasses_=distutils-r1 dcd5f48510105eb95e550ab968147365 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 38c85b725d0467e51954ea921b6c104b out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 666be58f658d6b32affe30f80e39a49e python-utils-r1 7870d60e8b98856ef02d33397fd5ec0f toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f -_md5_=baed35c86cd8709cd139815786cd17ac +_eclasses_=distutils-r1 dcd5f48510105eb95e550ab968147365 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 38c85b725d0467e51954ea921b6c104b out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 666be58f658d6b32affe30f80e39a49e python-utils-r1 a1a985ddd8795a8634b4b7f820b93143 toolchain-funcs ec8bbc28394c7305b43ea07164bd8f5f +_md5_=5bd55873aaed892e71220dbfdc6d68a0 |