summaryrefslogtreecommitdiff
path: root/metadata/md5-cache/sci-biology
diff options
context:
space:
mode:
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/HTSeq-2.0.212
-rw-r--r--metadata/md5-cache/sci-biology/HTSeq-999912
-rw-r--r--metadata/md5-cache/sci-biology/Manifest.gzbin21553 -> 21538 bytes
-rw-r--r--metadata/md5-cache/sci-biology/bcftools-1.1712
-rw-r--r--metadata/md5-cache/sci-biology/bedtools-2.30.04
-rw-r--r--metadata/md5-cache/sci-biology/biopandas-0.2.710
-rw-r--r--metadata/md5-cache/sci-biology/biopandas-0.4.110
-rw-r--r--metadata/md5-cache/sci-biology/biopython-1.8112
-rw-r--r--metadata/md5-cache/sci-biology/bowtie-2.4.410
-rw-r--r--metadata/md5-cache/sci-biology/bowtie-2.5.110
-rw-r--r--metadata/md5-cache/sci-biology/pysam-0.21.012
-rw-r--r--metadata/md5-cache/sci-biology/pysam-999912
12 files changed, 58 insertions, 58 deletions
diff --git a/metadata/md5-cache/sci-biology/HTSeq-2.0.2 b/metadata/md5-cache/sci-biology/HTSeq-2.0.2
index 3b33839cc6be..84e05c7cb4df 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-2.0.2
+++ b/metadata/md5-cache/sci-biology/HTSeq-2.0.2
@@ -1,17 +1,17 @@
-BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/pytest-7.2.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/setuptools-65.7.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
+BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/pytest-7.2.1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/setuptools-65.7.0[python_targets_python3_10(-)?,python_targets_python3_11(-)?]
DEFINED_PHASES=compile configure install prepare test
-DEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/matplotlib[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] )
+DEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/scipy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] )
DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files
EAPI=8
HOMEPAGE=https://htseq.readthedocs.io/
INHERIT=distutils-r1 flag-o-matic
-IUSE=test python_targets_python3_9 python_targets_python3_10 python_targets_python3_11
+IUSE=test python_targets_python3_10 python_targets_python3_11
KEYWORDS=~amd64
LICENSE=GPL-3+
-RDEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
-REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 )
+RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
+REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/htseq/htseq/archive/release_2.0.2.tar.gz -> HTSeq-2.0.2.gh.tar.gz
-_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 flag-o-matic 514815b1cc0dd4aeac177c2e812b3b1a multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 429bfd4e8d8e39db5385ba5744f30788 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
+_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 flag-o-matic 514815b1cc0dd4aeac177c2e812b3b1a multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 4544ab96b58e177dc52d75e42f5ee307 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
_md5_=29d76005d4f5d0a05fc0182fba12f7f5
diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999
index 19b49e551512..03de810699ac 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-9999
+++ b/metadata/md5-cache/sci-biology/HTSeq-9999
@@ -1,16 +1,16 @@
-BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/pytest-7.2.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/setuptools-65.7.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-vcs/git-1.8.2.1[curl]
+BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/pytest-7.2.1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/setuptools-65.7.0[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-vcs/git-1.8.2.1[curl]
DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/matplotlib[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] )
+DEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/scipy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] )
DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files
EAPI=8
HOMEPAGE=https://htseq.readthedocs.io/
INHERIT=distutils-r1 flag-o-matic git-r3
-IUSE=test python_targets_python3_9 python_targets_python3_10 python_targets_python3_11
+IUSE=test python_targets_python3_10 python_targets_python3_11
LICENSE=GPL-3+
PROPERTIES=live
-RDEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
-REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 )
+RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
+REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 )
RESTRICT=!test? ( test )
SLOT=0
-_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 flag-o-matic 514815b1cc0dd4aeac177c2e812b3b1a git-r3 27e13c09a4c7e4c78ac812f74727e676 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 429bfd4e8d8e39db5385ba5744f30788 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
+_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 flag-o-matic 514815b1cc0dd4aeac177c2e812b3b1a git-r3 27e13c09a4c7e4c78ac812f74727e676 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 4544ab96b58e177dc52d75e42f5ee307 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
_md5_=29d76005d4f5d0a05fc0182fba12f7f5
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index f44d9926fcc1..444dacc76aca 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
Binary files differ
diff --git a/metadata/md5-cache/sci-biology/bcftools-1.17 b/metadata/md5-cache/sci-biology/bcftools-1.17
index 491341acb95a..71c5b69c224d 100644
--- a/metadata/md5-cache/sci-biology/bcftools-1.17
+++ b/metadata/md5-cache/sci-biology/bcftools-1.17
@@ -1,16 +1,16 @@
-BDEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
+BDEPEND=python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
DEFINED_PHASES=configure prepare setup
-DEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.17*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
+DEPEND=dev-lang/perl python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.17*:= sys-libs/zlib python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
DESCRIPTION=Utilities for variant calling and manipulating VCF and BCF files
EAPI=8
HOMEPAGE=http://www.htslib.org
INHERIT=python-single-r1
-IUSE=python_single_target_python3_9 python_single_target_python3_10 python_single_target_python3_11
+IUSE=python_single_target_python3_10 python_single_target_python3_11
KEYWORDS=~amd64 ~x86
LICENSE=MIT
-RDEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.17*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
-REQUIRED_USE=^^ ( python_single_target_python3_9 python_single_target_python3_10 python_single_target_python3_11 )
+RDEPEND=dev-lang/perl python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.17*:= sys-libs/zlib python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
+REQUIRED_USE=^^ ( python_single_target_python3_10 python_single_target_python3_11 )
SLOT=0
SRC_URI=https://github.com/samtools/bcftools/releases/download/1.17/bcftools-1.17.tar.bz2
-_eclasses_=multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 429bfd4e8d8e39db5385ba5744f30788 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
+_eclasses_=multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 4544ab96b58e177dc52d75e42f5ee307 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
_md5_=5271780ace94107aae357a985f191e14
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.30.0 b/metadata/md5-cache/sci-biology/bedtools-2.30.0
index b19afaaa5035..e11beff6e9bd 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.30.0
+++ b/metadata/md5-cache/sci-biology/bedtools-2.30.0
@@ -1,4 +1,4 @@
-BDEPEND=|| ( >=dev-lang/python-3.11.1-r1:3.11 >=dev-lang/python-3.10.9-r1:3.10 >=dev-lang/python-3.9.16-r1:3.9 ) test? ( >=sci-biology/samtools-1.10:0 )
+BDEPEND=|| ( >=dev-lang/python-3.11.1-r1:3.11 >=dev-lang/python-3.10.9-r1:3.10 ) test? ( >=sci-biology/samtools-1.10:0 )
DEFINED_PHASES=configure install setup
DEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
DESCRIPTION=Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats
@@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools-2.30.0.tar.gz
-_eclasses_=multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-any-r1 d2955aaac8daaaa69fcc6dc93ed19f29 python-utils-r1 429bfd4e8d8e39db5385ba5744f30788 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
+_eclasses_=multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-any-r1 d2955aaac8daaaa69fcc6dc93ed19f29 python-utils-r1 4544ab96b58e177dc52d75e42f5ee307 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
_md5_=6362b2cc40163766b0448cea57894c3a
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.7 b/metadata/md5-cache/sci-biology/biopandas-0.2.7
index 209e62f3deeb..c9b6632cc42e 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.2.7
+++ b/metadata/md5-cache/sci-biology/biopandas-0.2.7
@@ -1,16 +1,16 @@
-BDEPEND=test? ( dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/nose-1.3.7_p20221026[python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) >=dev-python/setuptools-65.7.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+BDEPEND=test? ( dev-python/numpy[python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_10(-)?] >=dev-python/nose-1.3.7_p20221026[python_targets_python3_10(-)?] ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) >=dev-python/setuptools-65.7.0[python_targets_python3_10(-)?]
DEFINED_PHASES=compile configure install prepare test
DESCRIPTION=Molecular Structures in Pandas DataFrames
EAPI=8
HOMEPAGE=https://rasbt.github.io/biopandas/ https://github.com/rasbt/biopandas https://pypi.org/project/BioPandas/
INHERIT=distutils-r1
-IUSE=test test python_targets_python3_9 python_targets_python3_10
+IUSE=test test python_targets_python3_10
KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=BSD
-RDEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 )
-REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 )
+RDEPEND=dev-python/numpy[python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_10(-)?] python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 )
+REQUIRED_USE=|| ( python_targets_python3_10 )
RESTRICT=!test? ( test ) !test? ( test )
SLOT=0
SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.7.tar.gz
-_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 429bfd4e8d8e39db5385ba5744f30788 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
+_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 4544ab96b58e177dc52d75e42f5ee307 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
_md5_=90f9103bd8f00cfb13d8821454edb4b8
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.4.1 b/metadata/md5-cache/sci-biology/biopandas-0.4.1
index e2976a4fa7c0..7583fdc3b085 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.4.1
+++ b/metadata/md5-cache/sci-biology/biopandas-0.4.1
@@ -1,16 +1,16 @@
-BDEPEND=test? ( dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/nose-1.3.7_p20221026[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/gpep517-13[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/setuptools-67.2.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/wheel-0.38.4[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
+BDEPEND=test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/nose-1.3.7_p20221026[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/gpep517-13[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/setuptools-67.2.0[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/wheel-0.38.4[python_targets_python3_10(-)?,python_targets_python3_11(-)?]
DEFINED_PHASES=compile configure install prepare test
DESCRIPTION=Molecular Structures in Pandas DataFrames
EAPI=8
HOMEPAGE=https://rasbt.github.io/biopandas/ https://github.com/BioPandas/biopandas https://pypi.org/project/biopandas/
INHERIT=distutils-r1
-IUSE=test python_targets_python3_9 python_targets_python3_10 python_targets_python3_11
+IUSE=test python_targets_python3_10 python_targets_python3_11
KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=BSD
-RDEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
-REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 )
+RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
+REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/BioPandas/biopandas/archive/refs/tags/v0.4.1.tar.gz -> biopandas-0.4.1.gh.tar.gz
-_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 429bfd4e8d8e39db5385ba5744f30788 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
+_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 4544ab96b58e177dc52d75e42f5ee307 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
_md5_=3b87692064234ef962aa52c8f93f9e17
diff --git a/metadata/md5-cache/sci-biology/biopython-1.81 b/metadata/md5-cache/sci-biology/biopython-1.81
index f1fff826bc82..98b7c53b3d92 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.81
+++ b/metadata/md5-cache/sci-biology/biopython-1.81
@@ -1,16 +1,16 @@
-BDEPEND=sys-devel/flex python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/setuptools-65.7.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
+BDEPEND=sys-devel/flex python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/setuptools-65.7.0[python_targets_python3_10(-)?,python_targets_python3_11(-)?]
DEFINED_PHASES=compile configure install postinst prepare test
-DEPEND=dev-python/matplotlib[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/networkx[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/rdflib[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pygraphviz[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pydot[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
+DEPEND=dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/networkx[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/rdflib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pygraphviz[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pydot[python_targets_python3_10(-)?,python_targets_python3_11(-)?]
DESCRIPTION=Python modules for computational molecular biology
EAPI=8
HOMEPAGE=https://www.biopython.org/ https://pypi.org/project/biopython/
INHERIT=distutils-r1 optfeature pypi
-IUSE=python_targets_python3_9 python_targets_python3_10 python_targets_python3_11
+IUSE=python_targets_python3_10 python_targets_python3_11
KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=HPND
-RDEPEND=dev-python/matplotlib[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/networkx[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/rdflib[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pygraphviz[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pydot[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
-REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 )
+RDEPEND=dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/networkx[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/rdflib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pygraphviz[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pydot[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
+REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 )
SLOT=0
SRC_URI=https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.81.tar.gz
-_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 optfeature 222cb475c5a4f7ae7cfb0bf510a6fe54 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 pypi 3b6a844fbf71f1581992b44c78b549b7 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 429bfd4e8d8e39db5385ba5744f30788 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
+_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 optfeature 222cb475c5a4f7ae7cfb0bf510a6fe54 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 pypi 3b6a844fbf71f1581992b44c78b549b7 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 4544ab96b58e177dc52d75e42f5ee307 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
_md5_=0633a971fcefdf1bd3b56330238719a8
diff --git a/metadata/md5-cache/sci-biology/bowtie-2.4.4 b/metadata/md5-cache/sci-biology/bowtie-2.4.4
index 3ea1f740144b..481a38e03e48 100644
--- a/metadata/md5-cache/sci-biology/bowtie-2.4.4
+++ b/metadata/md5-cache/sci-biology/bowtie-2.4.4
@@ -1,16 +1,16 @@
BDEPEND=app-arch/unzip
DEFINED_PHASES=compile install setup
-DEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) dev-lang/perl sys-libs/zlib
+DEPEND=python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) dev-lang/perl sys-libs/zlib
DESCRIPTION=Popular short read aligner for Next-generation sequencing data
EAPI=8
HOMEPAGE=http://bowtie-bio.sourceforge.net/bowtie2/
INHERIT=python-single-r1 toolchain-funcs
-IUSE=cpu_flags_x86_sse2 examples python_single_target_python3_9 python_single_target_python3_10
+IUSE=cpu_flags_x86_sse2 examples +python_single_target_python3_10
KEYWORDS=~amd64 ~x86
LICENSE=GPL-3
-RDEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) dev-lang/perl sys-libs/zlib
-REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_9 python_single_target_python3_10 )
+RDEPEND=python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) dev-lang/perl sys-libs/zlib
+REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_10 )
SLOT=2
SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.4.4/bowtie2-2.4.4-source.zip
-_eclasses_=multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 429bfd4e8d8e39db5385ba5744f30788 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
+_eclasses_=multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 4544ab96b58e177dc52d75e42f5ee307 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
_md5_=7e782380091eb080dc11ed573335cbf2
diff --git a/metadata/md5-cache/sci-biology/bowtie-2.5.1 b/metadata/md5-cache/sci-biology/bowtie-2.5.1
index a88afe9df049..d80c0af4402f 100644
--- a/metadata/md5-cache/sci-biology/bowtie-2.5.1
+++ b/metadata/md5-cache/sci-biology/bowtie-2.5.1
@@ -1,17 +1,17 @@
BDEPEND=app-arch/unzip test? ( dev-perl/App-cpanminus dev-perl/B-COW dev-perl/Clone dev-perl/Config-General dev-perl/File-Which dev-perl/local-lib dev-perl/Math-Random dev-perl/Test-Deep dev-perl/Text-Template )
DEFINED_PHASES=compile install setup
-DEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) dev-lang/perl sys-libs/zlib
+DEPEND=python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) dev-lang/perl sys-libs/zlib
DESCRIPTION=Popular short read aligner for Next-generation sequencing data
EAPI=8
HOMEPAGE=https://bowtie-bio.sourceforge.net/bowtie2/
INHERIT=python-single-r1 toolchain-funcs
-IUSE=test cpu_flags_x86_sse2 examples python_single_target_python3_9 python_single_target_python3_10 python_single_target_python3_11
+IUSE=test cpu_flags_x86_sse2 examples python_single_target_python3_10 python_single_target_python3_11
KEYWORDS=~amd64 ~x86
LICENSE=GPL-3
-RDEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) dev-lang/perl sys-libs/zlib
-REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_9 python_single_target_python3_10 python_single_target_python3_11 )
+RDEPEND=python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) dev-lang/perl sys-libs/zlib
+REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_10 python_single_target_python3_11 )
RESTRICT=test
SLOT=2
SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.5.1/bowtie2-2.5.1-source.zip
-_eclasses_=multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 429bfd4e8d8e39db5385ba5744f30788 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
+_eclasses_=multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 4544ab96b58e177dc52d75e42f5ee307 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
_md5_=831933c38b43e507442ee567a3c3583f
diff --git a/metadata/md5-cache/sci-biology/pysam-0.21.0 b/metadata/md5-cache/sci-biology/pysam-0.21.0
index 90a7d448ab65..12ee64a2b942 100644
--- a/metadata/md5-cache/sci-biology/pysam-0.21.0
+++ b/metadata/md5-cache/sci-biology/pysam-0.21.0
@@ -1,17 +1,17 @@
-BDEPEND=test? ( =sci-biology/bcftools-1.17* =sci-biology/samtools-1.17* ) test? ( =sci-libs/htslib-1.17*:= >=dev-python/pytest-7.2.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/setuptools-65.7.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
+BDEPEND=test? ( =sci-biology/bcftools-1.17* =sci-biology/samtools-1.17* ) test? ( =sci-libs/htslib-1.17*:= >=dev-python/pytest-7.2.1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/setuptools-65.7.0[python_targets_python3_10(-)?,python_targets_python3_11(-)?]
DEFINED_PHASES=compile configure install prepare test
-DEPEND==sci-libs/htslib-1.17*:= dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
+DEPEND==sci-libs/htslib-1.17*:= dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_10(-)?,python_targets_python3_11(-)?]
DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format
EAPI=8
HOMEPAGE=https://github.com/pysam-developers/pysam https://pypi.org/project/pysam/
INHERIT=distutils-r1
-IUSE=test python_targets_python3_9 python_targets_python3_10 python_targets_python3_11
+IUSE=test python_targets_python3_10 python_targets_python3_11
KEYWORDS=~amd64 ~x86
LICENSE=MIT
-RDEPEND==sci-libs/htslib-1.17*:= python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
-REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 )
+RDEPEND==sci-libs/htslib-1.17*:= python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
+REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.21.0.tar.gz -> pysam-0.21.0.gh.tar.gz
-_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 429bfd4e8d8e39db5385ba5744f30788 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
+_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 4544ab96b58e177dc52d75e42f5ee307 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
_md5_=d2f337ee806641d85739cd55c8698806
diff --git a/metadata/md5-cache/sci-biology/pysam-9999 b/metadata/md5-cache/sci-biology/pysam-9999
index f20002877ec9..a9e3429926d9 100644
--- a/metadata/md5-cache/sci-biology/pysam-9999
+++ b/metadata/md5-cache/sci-biology/pysam-9999
@@ -1,16 +1,16 @@
-BDEPEND=test? ( >=sci-biology/bcftools-1.17 >=sci-biology/samtools-1.17 ) test? ( >=sci-libs/htslib-1.17 >=dev-python/pytest-7.2.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/setuptools-65.7.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-vcs/git-1.8.2.1[curl]
+BDEPEND=test? ( >=sci-biology/bcftools-1.17 >=sci-biology/samtools-1.17 ) test? ( >=sci-libs/htslib-1.17 >=dev-python/pytest-7.2.1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/setuptools-65.7.0[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-vcs/git-1.8.2.1[curl]
DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=>=sci-libs/htslib-1.17 dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
+DEPEND=>=sci-libs/htslib-1.17 dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_10(-)?,python_targets_python3_11(-)?]
DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format
EAPI=8
HOMEPAGE=https://github.com/pysam-developers/pysam https://pypi.org/project/pysam/
INHERIT=distutils-r1 git-r3
-IUSE=test python_targets_python3_9 python_targets_python3_10 python_targets_python3_11
+IUSE=test python_targets_python3_10 python_targets_python3_11
LICENSE=MIT
PROPERTIES=live
-RDEPEND=>=sci-libs/htslib-1.17 python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
-REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 )
+RDEPEND=>=sci-libs/htslib-1.17 python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
+REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 )
RESTRICT=!test? ( test )
SLOT=0
-_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 git-r3 27e13c09a4c7e4c78ac812f74727e676 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 429bfd4e8d8e39db5385ba5744f30788 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
+_eclasses_=distutils-r1 ff196cc3d0837f4b97547cbf8abeec65 git-r3 27e13c09a4c7e4c78ac812f74727e676 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 4544ab96b58e177dc52d75e42f5ee307 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
_md5_=bcdb07ed2c7ed322810daba181d02da3
generated by cgit v1.2.3 (git 2.25.1) at 2024-08-16 18:50:37 +0000