diff options
Diffstat (limited to 'metadata/md5-cache/sci-biology')
| -rw-r--r-- | metadata/md5-cache/sci-biology/Manifest.gz | bin | 22019 -> 21704 bytes | |||
| -rw-r--r-- | metadata/md5-cache/sci-biology/bcftools-1.16 | 16 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/pysam-0.21.0 (renamed from metadata/md5-cache/sci-biology/pysam-0.20.0) | 10 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/samtools-1.16.1 | 14 |
4 files changed, 5 insertions, 35 deletions
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz Binary files differindex 1b6a69c840f4..ae7ea53864b8 100644 --- a/metadata/md5-cache/sci-biology/Manifest.gz +++ b/metadata/md5-cache/sci-biology/Manifest.gz diff --git a/metadata/md5-cache/sci-biology/bcftools-1.16 b/metadata/md5-cache/sci-biology/bcftools-1.16 deleted file mode 100644 index 2b03f0060335..000000000000 --- a/metadata/md5-cache/sci-biology/bcftools-1.16 +++ /dev/null @@ -1,16 +0,0 @@ -BDEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) -DEFINED_PHASES=configure prepare setup -DEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.16*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) -DESCRIPTION=Utilities for variant calling and manipulating VCF and BCF files -EAPI=8 -HOMEPAGE=http://www.htslib.org -INHERIT=python-single-r1 -IUSE=python_single_target_python3_9 python_single_target_python3_10 python_single_target_python3_11 -KEYWORDS=~amd64 ~x86 -LICENSE=MIT -RDEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.16*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) -REQUIRED_USE=^^ ( python_single_target_python3_9 python_single_target_python3_10 python_single_target_python3_11 ) -SLOT=0 -SRC_URI=https://github.com/samtools/bcftools/releases/download/1.16/bcftools-1.16.tar.bz2 -_eclasses_=multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 429bfd4e8d8e39db5385ba5744f30788 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e -_md5_=5271780ace94107aae357a985f191e14 diff --git a/metadata/md5-cache/sci-biology/pysam-0.20.0 b/metadata/md5-cache/sci-biology/pysam-0.21.0 index 89649e5e1fa3..df49ef494718 100644 --- a/metadata/md5-cache/sci-biology/pysam-0.20.0 +++ b/metadata/md5-cache/sci-biology/pysam-0.21.0 @@ -1,6 +1,6 @@ -BDEPEND=test? ( =sci-biology/bcftools-1.16* =sci-biology/samtools-1.16* ) test? ( =sci-libs/htslib-1.16*:= >=dev-python/pytest-7.2.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/setuptools-65.7.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] +BDEPEND=test? ( =sci-biology/bcftools-1.17* =sci-biology/samtools-1.17* ) test? ( =sci-libs/htslib-1.17*:= >=dev-python/pytest-7.2.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/setuptools-65.7.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] DEFINED_PHASES=compile configure install prepare test -DEPEND==sci-libs/htslib-1.16*:= dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] +DEPEND==sci-libs/htslib-1.17*:= dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format EAPI=8 HOMEPAGE=https://github.com/pysam-developers/pysam https://pypi.org/project/pysam/ @@ -8,10 +8,10 @@ INHERIT=distutils-r1 IUSE=test python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 KEYWORDS=~amd64 ~x86 LICENSE=MIT -RDEPEND==sci-libs/htslib-1.16*:= python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) +RDEPEND==sci-libs/htslib-1.17*:= python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 ) RESTRICT=!test? ( test ) SLOT=0 -SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.20.0.tar.gz -> pysam-0.20.0.gh.tar.gz +SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.21.0.tar.gz -> pysam-0.21.0.gh.tar.gz _eclasses_=distutils-r1 05bcfd9823be251f6e9f211ca285094e multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib d1408425c7c4a7669b9b17735404b693 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 429bfd4e8d8e39db5385ba5744f30788 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e -_md5_=82d5f0e85825a15553dc3ea698455b1d +_md5_=39158fb80a347de0c5d385834986487f diff --git a/metadata/md5-cache/sci-biology/samtools-1.16.1 b/metadata/md5-cache/sci-biology/samtools-1.16.1 deleted file mode 100644 index c13aec99ca4d..000000000000 --- a/metadata/md5-cache/sci-biology/samtools-1.16.1 +++ /dev/null @@ -1,14 +0,0 @@ -BDEPEND=virtual/pkgconfig -DEFINED_PHASES=compile configure install prepare -DEPEND=dev-lang/perl =sci-libs/htslib-1.16*:= sys-libs/ncurses:=[unicode(+)] sys-libs/zlib -DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats -EAPI=8 -HOMEPAGE=http://www.htslib.org/ -INHERIT=toolchain-funcs -KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos -LICENSE=MIT -RDEPEND=dev-lang/perl =sci-libs/htslib-1.16*:= sys-libs/ncurses:=[unicode(+)] sys-libs/zlib -SLOT=0 -SRC_URI=https://github.com/samtools/samtools/releases/download/1.16.1/samtools-1.16.1.tar.bz2 -_eclasses_=multilib d1408425c7c4a7669b9b17735404b693 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e -_md5_=b8e35bdd6557538de4b0e9d3b6c9295c |