diff options
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r-- | metadata/md5-cache/sci-biology/HTSeq-2.0.2 | 6 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/HTSeq-9999 | 6 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/Manifest.gz | bin | 21233 -> 21229 bytes | |||
-rw-r--r-- | metadata/md5-cache/sci-biology/augustus-3.4.0-r3 | 2 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/bcftools-1.17 | 8 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/bedtools-2.30.0 | 4 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/biopandas-0.4.1 | 6 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/biopython-1.81 | 6 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/bowtie-2.4.4 | 6 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/bowtie-2.5.1 | 6 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/pysam-0.21.0 | 6 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/pysam-9999 | 6 |
12 files changed, 31 insertions, 31 deletions
diff --git a/metadata/md5-cache/sci-biology/HTSeq-2.0.2 b/metadata/md5-cache/sci-biology/HTSeq-2.0.2 index 2bd0984641dc..5eb945c6696b 100644 --- a/metadata/md5-cache/sci-biology/HTSeq-2.0.2 +++ b/metadata/md5-cache/sci-biology/HTSeq-2.0.2 @@ -1,4 +1,4 @@ -BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/pytest-7.3.1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) >=dev-python/setuptools-67.7.2[python_targets_python3_10(-)?,python_targets_python3_11(-)?] +BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/pytest-7.3.1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) >=dev-python/setuptools-67.8.0-r1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] DEFINED_PHASES=compile configure install prepare test DEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/scipy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files @@ -8,10 +8,10 @@ INHERIT=distutils-r1 flag-o-matic IUSE=test python_targets_python3_10 python_targets_python3_11 KEYWORDS=~amd64 LICENSE=GPL-3+ -RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) +RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/htseq/htseq/archive/release_2.0.2.tar.gz -> HTSeq-2.0.2.gh.tar.gz -_eclasses_=distutils-r1 1c9a447ab8b90199e719e0e3a9a5cb00 flag-o-matic ad475baa777c9978fa035216c8264a10 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 a013e16d5d896b3d8be68dd2a0e846ea toolchain-funcs 513c31b3346458ed1f3878b57da6d61c +_eclasses_=distutils-r1 b7cd5736a595ec0df9b164d5aec6f228 flag-o-matic ad475baa777c9978fa035216c8264a10 multibuild 30dbf3c5a31db09a19f31ad0a68f2405 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 b3f874304c1bda6ffc3450ebb4ae5169 python-utils-r1 7661dc585f75dd1f81eccefe37bef093 toolchain-funcs 513c31b3346458ed1f3878b57da6d61c _md5_=29d76005d4f5d0a05fc0182fba12f7f5 diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999 index aec7964260fb..48ee484bb9ae 100644 --- a/metadata/md5-cache/sci-biology/HTSeq-9999 +++ b/metadata/md5-cache/sci-biology/HTSeq-9999 @@ -1,4 +1,4 @@ -BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/pytest-7.3.1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) >=dev-python/setuptools-67.7.2[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-vcs/git-1.8.2.1[curl] +BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/pytest-7.3.1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) >=dev-python/setuptools-67.8.0-r1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-vcs/git-1.8.2.1[curl] DEFINED_PHASES=compile configure install prepare test unpack DEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/scipy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files @@ -8,9 +8,9 @@ INHERIT=distutils-r1 flag-o-matic git-r3 IUSE=test python_targets_python3_10 python_targets_python3_11 LICENSE=GPL-3+ PROPERTIES=live -RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) +RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 ) RESTRICT=!test? ( test ) SLOT=0 -_eclasses_=distutils-r1 1c9a447ab8b90199e719e0e3a9a5cb00 flag-o-matic ad475baa777c9978fa035216c8264a10 git-r3 27e13c09a4c7e4c78ac812f74727e676 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 a013e16d5d896b3d8be68dd2a0e846ea toolchain-funcs 513c31b3346458ed1f3878b57da6d61c +_eclasses_=distutils-r1 b7cd5736a595ec0df9b164d5aec6f228 flag-o-matic ad475baa777c9978fa035216c8264a10 git-r3 27e13c09a4c7e4c78ac812f74727e676 multibuild 30dbf3c5a31db09a19f31ad0a68f2405 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 b3f874304c1bda6ffc3450ebb4ae5169 python-utils-r1 7661dc585f75dd1f81eccefe37bef093 toolchain-funcs 513c31b3346458ed1f3878b57da6d61c _md5_=29d76005d4f5d0a05fc0182fba12f7f5 diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz Binary files differindex f2ca5ab5db5e..a3a211dc6161 100644 --- a/metadata/md5-cache/sci-biology/Manifest.gz +++ b/metadata/md5-cache/sci-biology/Manifest.gz diff --git a/metadata/md5-cache/sci-biology/augustus-3.4.0-r3 b/metadata/md5-cache/sci-biology/augustus-3.4.0-r3 index d52ec6478326..dd613dff68c8 100644 --- a/metadata/md5-cache/sci-biology/augustus-3.4.0-r3 +++ b/metadata/md5-cache/sci-biology/augustus-3.4.0-r3 @@ -11,5 +11,5 @@ LICENSE=Artistic RDEPEND=dev-db/sqlite:3 dev-db/mysql++:= dev-db/mysql-connector-c:= dev-libs/boost:=[zlib] sci-biology/bamtools:= sci-biology/samtools:0 sci-libs/gsl:= sci-libs/htslib:= sci-libs/suitesparse sci-mathematics/lpsolve:= sys-libs/zlib SLOT=0 SRC_URI=https://github.com/Gaius-Augustus/Augustus/archive/refs/tags/v3.4.0.tar.gz -> augustus-3.4.0.tar.gz -_eclasses_=docs 7b9e167549c44efa7994614f33ba6d7a multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 513c31b3346458ed1f3878b57da6d61c +_eclasses_=docs f4e4c22139b7811a4dbdafaede74c229 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 513c31b3346458ed1f3878b57da6d61c _md5_=5af682d1467b7eddf54bfe603492b4fa diff --git a/metadata/md5-cache/sci-biology/bcftools-1.17 b/metadata/md5-cache/sci-biology/bcftools-1.17 index f8d011d87516..fffca16c8d5d 100644 --- a/metadata/md5-cache/sci-biology/bcftools-1.17 +++ b/metadata/md5-cache/sci-biology/bcftools-1.17 @@ -1,6 +1,6 @@ -BDEPEND=python_single_target_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) +BDEPEND=python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) DEFINED_PHASES=configure prepare setup -DEPEND=dev-lang/perl python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.17*:= sys-libs/zlib python_single_target_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) +DEPEND=dev-lang/perl python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.17*:= sys-libs/zlib python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) DESCRIPTION=Utilities for variant calling and manipulating VCF and BCF files EAPI=8 HOMEPAGE=http://www.htslib.org @@ -8,9 +8,9 @@ INHERIT=python-single-r1 IUSE=python_single_target_python3_10 python_single_target_python3_11 KEYWORDS=~amd64 ~x86 LICENSE=MIT -RDEPEND=dev-lang/perl python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.17*:= sys-libs/zlib python_single_target_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) +RDEPEND=dev-lang/perl python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.17*:= sys-libs/zlib python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) REQUIRED_USE=^^ ( python_single_target_python3_10 python_single_target_python3_11 ) SLOT=0 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.17/bcftools-1.17.tar.bz2 -_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 a013e16d5d896b3d8be68dd2a0e846ea toolchain-funcs 513c31b3346458ed1f3878b57da6d61c +_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 7661dc585f75dd1f81eccefe37bef093 toolchain-funcs 513c31b3346458ed1f3878b57da6d61c _md5_=5271780ace94107aae357a985f191e14 diff --git a/metadata/md5-cache/sci-biology/bedtools-2.30.0 b/metadata/md5-cache/sci-biology/bedtools-2.30.0 index 2a8eae361ca4..ae943bb87a7f 100644 --- a/metadata/md5-cache/sci-biology/bedtools-2.30.0 +++ b/metadata/md5-cache/sci-biology/bedtools-2.30.0 @@ -1,4 +1,4 @@ -BDEPEND=|| ( >=dev-lang/python-3.11.4:3.11 >=dev-lang/python-3.10.12:3.10 ) test? ( >=sci-biology/samtools-1.10:0 ) +BDEPEND=|| ( dev-lang/python:3.11 dev-lang/python:3.10 ) test? ( >=sci-biology/samtools-1.10:0 ) DEFINED_PHASES=configure install setup DEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib DESCRIPTION=Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats @@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools-2.30.0.tar.gz -_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-any-r1 d2955aaac8daaaa69fcc6dc93ed19f29 python-utils-r1 a013e16d5d896b3d8be68dd2a0e846ea toolchain-funcs 513c31b3346458ed1f3878b57da6d61c +_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-any-r1 845fed6b6dfc35679a4fea289272ddc0 python-utils-r1 7661dc585f75dd1f81eccefe37bef093 toolchain-funcs 513c31b3346458ed1f3878b57da6d61c _md5_=6362b2cc40163766b0448cea57894c3a diff --git a/metadata/md5-cache/sci-biology/biopandas-0.4.1 b/metadata/md5-cache/sci-biology/biopandas-0.4.1 index e35b7a3bca2b..85001c2a7a7b 100644 --- a/metadata/md5-cache/sci-biology/biopandas-0.4.1 +++ b/metadata/md5-cache/sci-biology/biopandas-0.4.1 @@ -1,4 +1,4 @@ -BDEPEND=test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/nose-1.3.7_p20221026[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) >=dev-python/gpep517-13[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/setuptools-67.7.2[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/wheel-0.40.0[python_targets_python3_10(-)?,python_targets_python3_11(-)?] +BDEPEND=test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/nose-1.3.7_p20221026[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) >=dev-python/gpep517-13[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/setuptools-67.8.0-r1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] DEFINED_PHASES=compile configure install prepare test DESCRIPTION=Molecular Structures in Pandas DataFrames EAPI=8 @@ -7,10 +7,10 @@ INHERIT=distutils-r1 IUSE=test python_targets_python3_10 python_targets_python3_11 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=BSD -RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) +RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/BioPandas/biopandas/archive/refs/tags/v0.4.1.tar.gz -> biopandas-0.4.1.gh.tar.gz -_eclasses_=distutils-r1 1c9a447ab8b90199e719e0e3a9a5cb00 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 a013e16d5d896b3d8be68dd2a0e846ea toolchain-funcs 513c31b3346458ed1f3878b57da6d61c +_eclasses_=distutils-r1 b7cd5736a595ec0df9b164d5aec6f228 flag-o-matic ad475baa777c9978fa035216c8264a10 multibuild 30dbf3c5a31db09a19f31ad0a68f2405 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 b3f874304c1bda6ffc3450ebb4ae5169 python-utils-r1 7661dc585f75dd1f81eccefe37bef093 toolchain-funcs 513c31b3346458ed1f3878b57da6d61c _md5_=3b87692064234ef962aa52c8f93f9e17 diff --git a/metadata/md5-cache/sci-biology/biopython-1.81 b/metadata/md5-cache/sci-biology/biopython-1.81 index 1a099d11565a..5cf92be4a829 100644 --- a/metadata/md5-cache/sci-biology/biopython-1.81 +++ b/metadata/md5-cache/sci-biology/biopython-1.81 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/flex python_targets_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) >=dev-python/setuptools-67.7.2[python_targets_python3_10(-)?,python_targets_python3_11(-)?] +BDEPEND=sys-devel/flex python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) >=dev-python/setuptools-67.8.0-r1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] DEFINED_PHASES=compile configure install postinst prepare test DEPEND=dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/networkx[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/rdflib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pygraphviz[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pydot[python_targets_python3_10(-)?,python_targets_python3_11(-)?] DESCRIPTION=Python modules for computational molecular biology @@ -8,9 +8,9 @@ INHERIT=distutils-r1 optfeature pypi IUSE=python_targets_python3_10 python_targets_python3_11 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=HPND -RDEPEND=dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/networkx[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/rdflib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pygraphviz[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pydot[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) +RDEPEND=dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/networkx[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/rdflib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pygraphviz[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pydot[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 ) SLOT=0 SRC_URI=https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.81.tar.gz -_eclasses_=distutils-r1 1c9a447ab8b90199e719e0e3a9a5cb00 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 optfeature 222cb475c5a4f7ae7cfb0bf510a6fe54 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 pypi 6b97d2db40ff6be180030687e6003199 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 a013e16d5d896b3d8be68dd2a0e846ea toolchain-funcs 513c31b3346458ed1f3878b57da6d61c +_eclasses_=distutils-r1 b7cd5736a595ec0df9b164d5aec6f228 flag-o-matic ad475baa777c9978fa035216c8264a10 multibuild 30dbf3c5a31db09a19f31ad0a68f2405 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 optfeature 222cb475c5a4f7ae7cfb0bf510a6fe54 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 pypi 2eecb475512bc76e5ea9192a681b9e6b python-r1 b3f874304c1bda6ffc3450ebb4ae5169 python-utils-r1 7661dc585f75dd1f81eccefe37bef093 toolchain-funcs 513c31b3346458ed1f3878b57da6d61c _md5_=0633a971fcefdf1bd3b56330238719a8 diff --git a/metadata/md5-cache/sci-biology/bowtie-2.4.4 b/metadata/md5-cache/sci-biology/bowtie-2.4.4 index 29a5bac28f54..b1793dfd0f58 100644 --- a/metadata/md5-cache/sci-biology/bowtie-2.4.4 +++ b/metadata/md5-cache/sci-biology/bowtie-2.4.4 @@ -1,6 +1,6 @@ BDEPEND=app-arch/unzip DEFINED_PHASES=compile install setup -DEPEND=python_single_target_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) dev-lang/perl sys-libs/zlib +DEPEND=python_single_target_python3_10? ( dev-lang/python:3.10 ) dev-lang/perl sys-libs/zlib DESCRIPTION=Popular short read aligner for Next-generation sequencing data EAPI=8 HOMEPAGE=http://bowtie-bio.sourceforge.net/bowtie2/ @@ -8,9 +8,9 @@ INHERIT=python-single-r1 toolchain-funcs IUSE=cpu_flags_x86_sse2 examples +python_single_target_python3_10 KEYWORDS=~amd64 ~x86 LICENSE=GPL-3 -RDEPEND=python_single_target_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) dev-lang/perl sys-libs/zlib +RDEPEND=python_single_target_python3_10? ( dev-lang/python:3.10 ) dev-lang/perl sys-libs/zlib REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_10 ) SLOT=2 SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.4.4/bowtie2-2.4.4-source.zip -_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 a013e16d5d896b3d8be68dd2a0e846ea toolchain-funcs 513c31b3346458ed1f3878b57da6d61c +_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 7661dc585f75dd1f81eccefe37bef093 toolchain-funcs 513c31b3346458ed1f3878b57da6d61c _md5_=7e782380091eb080dc11ed573335cbf2 diff --git a/metadata/md5-cache/sci-biology/bowtie-2.5.1 b/metadata/md5-cache/sci-biology/bowtie-2.5.1 index eb512ef9b84e..7fcaf9dc6ac1 100644 --- a/metadata/md5-cache/sci-biology/bowtie-2.5.1 +++ b/metadata/md5-cache/sci-biology/bowtie-2.5.1 @@ -1,6 +1,6 @@ BDEPEND=app-arch/unzip test? ( dev-perl/App-cpanminus dev-perl/B-COW dev-perl/Clone dev-perl/Config-General dev-perl/File-Which dev-perl/local-lib dev-perl/Math-Random dev-perl/Test-Deep dev-perl/Text-Template ) DEFINED_PHASES=compile install setup -DEPEND=python_single_target_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) dev-lang/perl sys-libs/zlib +DEPEND=python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) dev-lang/perl sys-libs/zlib DESCRIPTION=Popular short read aligner for Next-generation sequencing data EAPI=8 HOMEPAGE=https://bowtie-bio.sourceforge.net/bowtie2/ @@ -8,10 +8,10 @@ INHERIT=python-single-r1 toolchain-funcs IUSE=test cpu_flags_x86_sse2 examples python_single_target_python3_10 python_single_target_python3_11 KEYWORDS=~amd64 ~x86 LICENSE=GPL-3 -RDEPEND=python_single_target_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) dev-lang/perl sys-libs/zlib +RDEPEND=python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_target_python3_11? ( dev-lang/python:3.11 ) dev-lang/perl sys-libs/zlib REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_10 python_single_target_python3_11 ) RESTRICT=test SLOT=2 SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.5.1/bowtie2-2.5.1-source.zip -_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 a013e16d5d896b3d8be68dd2a0e846ea toolchain-funcs 513c31b3346458ed1f3878b57da6d61c +_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 75118e916668a74c660a13b0ecb22562 python-utils-r1 7661dc585f75dd1f81eccefe37bef093 toolchain-funcs 513c31b3346458ed1f3878b57da6d61c _md5_=831933c38b43e507442ee567a3c3583f diff --git a/metadata/md5-cache/sci-biology/pysam-0.21.0 b/metadata/md5-cache/sci-biology/pysam-0.21.0 index 40d8fafecc70..7e6fa778db89 100644 --- a/metadata/md5-cache/sci-biology/pysam-0.21.0 +++ b/metadata/md5-cache/sci-biology/pysam-0.21.0 @@ -1,4 +1,4 @@ -BDEPEND=test? ( =sci-biology/bcftools-1.17* =sci-biology/samtools-1.17* ) test? ( =sci-libs/htslib-1.17*:= >=dev-python/pytest-7.3.1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) >=dev-python/setuptools-67.7.2[python_targets_python3_10(-)?,python_targets_python3_11(-)?] +BDEPEND=test? ( =sci-biology/bcftools-1.17* =sci-biology/samtools-1.17* ) test? ( =sci-libs/htslib-1.17*:= >=dev-python/pytest-7.3.1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) >=dev-python/setuptools-67.8.0-r1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] DEFINED_PHASES=compile configure install prepare test DEPEND==sci-libs/htslib-1.17*:= dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_10(-)?,python_targets_python3_11(-)?] DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format @@ -8,10 +8,10 @@ INHERIT=distutils-r1 IUSE=test python_targets_python3_10 python_targets_python3_11 KEYWORDS=~amd64 ~x86 LICENSE=MIT -RDEPEND==sci-libs/htslib-1.17*:= python_targets_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) +RDEPEND==sci-libs/htslib-1.17*:= python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.21.0.tar.gz -> pysam-0.21.0.gh.tar.gz -_eclasses_=distutils-r1 1c9a447ab8b90199e719e0e3a9a5cb00 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 a013e16d5d896b3d8be68dd2a0e846ea toolchain-funcs 513c31b3346458ed1f3878b57da6d61c +_eclasses_=distutils-r1 b7cd5736a595ec0df9b164d5aec6f228 flag-o-matic ad475baa777c9978fa035216c8264a10 multibuild 30dbf3c5a31db09a19f31ad0a68f2405 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 b3f874304c1bda6ffc3450ebb4ae5169 python-utils-r1 7661dc585f75dd1f81eccefe37bef093 toolchain-funcs 513c31b3346458ed1f3878b57da6d61c _md5_=d2f337ee806641d85739cd55c8698806 diff --git a/metadata/md5-cache/sci-biology/pysam-9999 b/metadata/md5-cache/sci-biology/pysam-9999 index 5a0b0487d64e..c495207393d9 100644 --- a/metadata/md5-cache/sci-biology/pysam-9999 +++ b/metadata/md5-cache/sci-biology/pysam-9999 @@ -1,4 +1,4 @@ -BDEPEND=test? ( >=sci-biology/bcftools-1.17 >=sci-biology/samtools-1.17 ) test? ( >=sci-libs/htslib-1.17 >=dev-python/pytest-7.3.1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) >=dev-python/setuptools-67.7.2[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-vcs/git-1.8.2.1[curl] +BDEPEND=test? ( >=sci-biology/bcftools-1.17 >=sci-biology/samtools-1.17 ) test? ( >=sci-libs/htslib-1.17 >=dev-python/pytest-7.3.1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) >=dev-python/setuptools-67.8.0-r1[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-vcs/git-1.8.2.1[curl] DEFINED_PHASES=compile configure install prepare test unpack DEPEND=>=sci-libs/htslib-1.17 dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_10(-)?,python_targets_python3_11(-)?] DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format @@ -8,9 +8,9 @@ INHERIT=distutils-r1 git-r3 IUSE=test python_targets_python3_10 python_targets_python3_11 LICENSE=MIT PROPERTIES=live -RDEPEND=>=sci-libs/htslib-1.17 python_targets_python3_10? ( >=dev-lang/python-3.10.12:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.4:3.11 ) +RDEPEND=>=sci-libs/htslib-1.17 python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 ) RESTRICT=!test? ( test ) SLOT=0 -_eclasses_=distutils-r1 1c9a447ab8b90199e719e0e3a9a5cb00 git-r3 27e13c09a4c7e4c78ac812f74727e676 multibuild bddcb51b74f4a76724ff7cf8e7388869 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 3c6cd0f418ba702c186a9865b85e704d python-utils-r1 a013e16d5d896b3d8be68dd2a0e846ea toolchain-funcs 513c31b3346458ed1f3878b57da6d61c +_eclasses_=distutils-r1 b7cd5736a595ec0df9b164d5aec6f228 flag-o-matic ad475baa777c9978fa035216c8264a10 git-r3 27e13c09a4c7e4c78ac812f74727e676 multibuild 30dbf3c5a31db09a19f31ad0a68f2405 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 b3f874304c1bda6ffc3450ebb4ae5169 python-utils-r1 7661dc585f75dd1f81eccefe37bef093 toolchain-funcs 513c31b3346458ed1f3878b57da6d61c _md5_=bcdb07ed2c7ed322810daba181d02da3 |