diff options
Diffstat (limited to 'metadata/md5-cache/sci-biology')
| -rw-r--r-- | metadata/md5-cache/sci-biology/HTSeq-2.0.2 | 6 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/HTSeq-9999 | 6 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/Manifest.gz | bin | 21709 -> 21703 bytes | |||
| -rw-r--r-- | metadata/md5-cache/sci-biology/bamtools-2.5.2 | 2 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/bamtools-9999 | 2 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/bcftools-1.15.1 | 8 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/bedtools-2.30.0 | 4 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/biopandas-0.2.7 | 6 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/biopython-1.79 | 6 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/bowtie-2.4.4 | 6 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/express-1.5.1 | 2 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/fasttree-2.1.11 | 2 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/kallisto-0.46.2 | 2 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/pysam-0.19.1 | 6 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/seqan-2.4.0-r1 | 2 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/seqan-3.1.0 | 2 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/uchime-4.2.40-r1 | 2 |
17 files changed, 32 insertions, 32 deletions
diff --git a/metadata/md5-cache/sci-biology/HTSeq-2.0.2 b/metadata/md5-cache/sci-biology/HTSeq-2.0.2 index d6546d6ef2e4..31753b0b1991 100644 --- a/metadata/md5-cache/sci-biology/HTSeq-2.0.2 +++ b/metadata/md5-cache/sci-biology/HTSeq-2.0.2 @@ -1,4 +1,4 @@ -BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) >=dev-python/setuptools-65.3.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] +BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] DEFINED_PHASES=compile configure install prepare test DEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files @@ -8,10 +8,10 @@ INHERIT=distutils-r1 flag-o-matic IUSE=test test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 KEYWORDS=~amd64 LICENSE=GPL-3+ -RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) +RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 ) RESTRICT=!test? ( test ) !test? ( test ) SLOT=0 SRC_URI=https://github.com/htseq/htseq/archive/release_2.0.2.tar.gz -> HTSeq-2.0.2.gh.tar.gz -_eclasses_=distutils-r1 8c1ceb6b71a65547b0ea7bc901d906cb flag-o-matic 29a755b1291d64133634d80b0328f153 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 +_eclasses_=distutils-r1 da32ffc285e9f13313f2387570e35b87 flag-o-matic 29a755b1291d64133634d80b0328f153 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 8ed38f92fe095be374d6c4c8d4c0dda7 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 25c880c1db58e21b80b684bacc964958 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 _md5_=eaf0038e987d5268b687db2978b9cf87 diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999 index d5eb4c628664..0ff861132440 100644 --- a/metadata/md5-cache/sci-biology/HTSeq-9999 +++ b/metadata/md5-cache/sci-biology/HTSeq-9999 @@ -1,4 +1,4 @@ -BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) >=dev-python/setuptools-65.3.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-vcs/git-1.8.2.1[curl] +BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-vcs/git-1.8.2.1[curl] DEFINED_PHASES=compile configure install prepare test unpack DEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files @@ -8,9 +8,9 @@ INHERIT=distutils-r1 flag-o-matic git-r3 IUSE=test test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 LICENSE=GPL-3+ PROPERTIES=live -RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) +RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 ) RESTRICT=!test? ( test ) !test? ( test ) SLOT=0 -_eclasses_=distutils-r1 8c1ceb6b71a65547b0ea7bc901d906cb flag-o-matic 29a755b1291d64133634d80b0328f153 git-r3 2347f8fe2d392b2a091191f94be37e6f multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 +_eclasses_=distutils-r1 da32ffc285e9f13313f2387570e35b87 flag-o-matic 29a755b1291d64133634d80b0328f153 git-r3 2347f8fe2d392b2a091191f94be37e6f multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 8ed38f92fe095be374d6c4c8d4c0dda7 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 25c880c1db58e21b80b684bacc964958 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 _md5_=eaf0038e987d5268b687db2978b9cf87 diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz Binary files differindex fd66ecd655a7..d2ebe65680ed 100644 --- a/metadata/md5-cache/sci-biology/Manifest.gz +++ b/metadata/md5-cache/sci-biology/Manifest.gz diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.2 b/metadata/md5-cache/sci-biology/bamtools-2.5.2 index 483d7eb2f48d..9c5c9b04b5a1 100644 --- a/metadata/md5-cache/sci-biology/bamtools-2.5.2 +++ b/metadata/md5-cache/sci-biology/bamtools-2.5.2 @@ -10,5 +10,5 @@ LICENSE=MIT RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= SLOT=0/2.5.2 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.2.tar.gz -> bamtools-2.5.2.tar.gz -_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 29a755b1291d64133634d80b0328f153 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 wrapper 4a1902f969e5718126434fc35f3a0d9c xdg-utils ac0e315a3688929e34ac75b139e7349a +_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 29a755b1291d64133634d80b0328f153 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 8ed38f92fe095be374d6c4c8d4c0dda7 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 wrapper 4a1902f969e5718126434fc35f3a0d9c xdg-utils ac0e315a3688929e34ac75b139e7349a _md5_=efdfbdbf4181a018ee9965d5c16be71f diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999 index 6eade12e5b53..864ad86f859e 100644 --- a/metadata/md5-cache/sci-biology/bamtools-9999 +++ b/metadata/md5-cache/sci-biology/bamtools-9999 @@ -9,5 +9,5 @@ LICENSE=MIT PROPERTIES=live RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= SLOT=0/9999 -_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 29a755b1291d64133634d80b0328f153 git-r3 2347f8fe2d392b2a091191f94be37e6f multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 wrapper 4a1902f969e5718126434fc35f3a0d9c xdg-utils ac0e315a3688929e34ac75b139e7349a +_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 29a755b1291d64133634d80b0328f153 git-r3 2347f8fe2d392b2a091191f94be37e6f multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 8ed38f92fe095be374d6c4c8d4c0dda7 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 wrapper 4a1902f969e5718126434fc35f3a0d9c xdg-utils ac0e315a3688929e34ac75b139e7349a _md5_=a2299dc6ca850c1c25582656d7586681 diff --git a/metadata/md5-cache/sci-biology/bcftools-1.15.1 b/metadata/md5-cache/sci-biology/bcftools-1.15.1 index 5305c755f997..39608e83a084 100644 --- a/metadata/md5-cache/sci-biology/bcftools-1.15.1 +++ b/metadata/md5-cache/sci-biology/bcftools-1.15.1 @@ -1,6 +1,6 @@ -BDEPEND=python_single_target_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) +BDEPEND=python_single_target_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) DEFINED_PHASES=configure prepare setup -DEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) +DEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) DESCRIPTION=Utilities for variant calling and manipulating VCF and BCF files EAPI=8 HOMEPAGE=http://www.htslib.org @@ -8,9 +8,9 @@ INHERIT=python-single-r1 IUSE=python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 KEYWORDS=~amd64 ~x86 LICENSE=MIT -RDEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) +RDEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) REQUIRED_USE=^^ ( python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 ) SLOT=0 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.15.1/bcftools-1.15.1.tar.bz2 -_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 a5747fe6dc0651d95cb78eddd5e160a8 python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 +_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 a5747fe6dc0651d95cb78eddd5e160a8 python-utils-r1 25c880c1db58e21b80b684bacc964958 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 _md5_=a991b200539f7c26af7f584fe62e90f5 diff --git a/metadata/md5-cache/sci-biology/bedtools-2.30.0 b/metadata/md5-cache/sci-biology/bedtools-2.30.0 index 28e4029a6787..21ea96d492fc 100644 --- a/metadata/md5-cache/sci-biology/bedtools-2.30.0 +++ b/metadata/md5-cache/sci-biology/bedtools-2.30.0 @@ -1,4 +1,4 @@ -BDEPEND=|| ( >=dev-lang/python-3.11.0_beta4:3.11 >=dev-lang/python-3.10.4:3.10 >=dev-lang/python-3.9.12:3.9 >=dev-lang/python-3.8.13:3.8 ) test? ( >=sci-biology/samtools-1.10:0 ) +BDEPEND=|| ( >=dev-lang/python-3.11.0_p2:3.11 >=dev-lang/python-3.10.8_p3:3.10 >=dev-lang/python-3.9.15_p3:3.9 >=dev-lang/python-3.8.15_p3:3.8 ) test? ( >=sci-biology/samtools-1.10:0 ) DEFINED_PHASES=configure install setup DEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib DESCRIPTION=Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats @@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools-2.30.0.tar.gz -_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-any-r1 f2f00fb79b5e888b5011d4c51240ae97 python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 +_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-any-r1 f2f00fb79b5e888b5011d4c51240ae97 python-utils-r1 25c880c1db58e21b80b684bacc964958 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 _md5_=5f18ddd41275559b1783fee4a2405f1f diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.7 b/metadata/md5-cache/sci-biology/biopandas-0.2.7 index f580ff3d018a..2f18c04a4176 100644 --- a/metadata/md5-cache/sci-biology/biopandas-0.2.7 +++ b/metadata/md5-cache/sci-biology/biopandas-0.2.7 @@ -1,4 +1,4 @@ -BDEPEND=test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/nose-1.3.7_p20211111_p1-r1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) >=dev-python/setuptools-65.3.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] +BDEPEND=test? ( dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/nose-1.3.7_p20221026[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] DEFINED_PHASES=compile configure install prepare test DESCRIPTION=Molecular Structures in Pandas DataFrames EAPI=8 @@ -7,10 +7,10 @@ INHERIT=distutils-r1 IUSE=test test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=BSD -RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) +RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 ) RESTRICT=!test? ( test ) !test? ( test ) SLOT=0 SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.7.tar.gz -_eclasses_=distutils-r1 8c1ceb6b71a65547b0ea7bc901d906cb multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 +_eclasses_=distutils-r1 da32ffc285e9f13313f2387570e35b87 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 8ed38f92fe095be374d6c4c8d4c0dda7 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 25c880c1db58e21b80b684bacc964958 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 _md5_=493935812e002415b6fce30c9e9dc8f8 diff --git a/metadata/md5-cache/sci-biology/biopython-1.79 b/metadata/md5-cache/sci-biology/biopython-1.79 index 2c3246cb28fc..065e0a1b0db9 100644 --- a/metadata/md5-cache/sci-biology/biopython-1.79 +++ b/metadata/md5-cache/sci-biology/biopython-1.79 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/flex python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) >=dev-python/setuptools-65.3.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] +BDEPEND=sys-devel/flex python_targets_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] DEFINED_PHASES=compile configure install postinst prepare test DEPEND=dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/rdflib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pygraphviz[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pydot[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] DESCRIPTION=Python modules for computational molecular biology @@ -8,9 +8,9 @@ INHERIT=distutils-r1 optfeature IUSE=python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=HPND -RDEPEND=dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/rdflib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pygraphviz[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pydot[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) +RDEPEND=dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/rdflib[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pygraphviz[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pydot[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 ) SLOT=0 SRC_URI=mirror://pypi/b/biopython/biopython-1.79.tar.gz -_eclasses_=distutils-r1 8c1ceb6b71a65547b0ea7bc901d906cb multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 optfeature 1a2157392a869265b2afcb63a26c12ac python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 +_eclasses_=distutils-r1 da32ffc285e9f13313f2387570e35b87 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 8ed38f92fe095be374d6c4c8d4c0dda7 optfeature 1a2157392a869265b2afcb63a26c12ac python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 25c880c1db58e21b80b684bacc964958 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 _md5_=89d2124a2c9f76eda9c399f23c96a8b8 diff --git a/metadata/md5-cache/sci-biology/bowtie-2.4.4 b/metadata/md5-cache/sci-biology/bowtie-2.4.4 index 42480fdd7865..ebde18ccc514 100644 --- a/metadata/md5-cache/sci-biology/bowtie-2.4.4 +++ b/metadata/md5-cache/sci-biology/bowtie-2.4.4 @@ -1,6 +1,6 @@ BDEPEND=app-arch/unzip DEFINED_PHASES=compile install setup -DEPEND=python_single_target_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) dev-lang/perl sys-libs/zlib +DEPEND=python_single_target_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) dev-lang/perl sys-libs/zlib DESCRIPTION=Popular short read aligner for Next-generation sequencing data EAPI=8 HOMEPAGE=http://bowtie-bio.sourceforge.net/bowtie2/ @@ -8,9 +8,9 @@ INHERIT=python-single-r1 toolchain-funcs IUSE=cpu_flags_x86_sse2 examples python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 KEYWORDS=~amd64 ~x86 LICENSE=GPL-3 -RDEPEND=python_single_target_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) dev-lang/perl sys-libs/zlib +RDEPEND=python_single_target_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) dev-lang/perl sys-libs/zlib REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 ) SLOT=2 SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.4.4/bowtie2-2.4.4-source.zip -_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 a5747fe6dc0651d95cb78eddd5e160a8 python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 +_eclasses_=multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-single-r1 a5747fe6dc0651d95cb78eddd5e160a8 python-utils-r1 25c880c1db58e21b80b684bacc964958 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 _md5_=a169406c93e64d9cae6cbb8ad262f62b diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1 index c327e5db3be6..5cf6cd5085d4 100644 --- a/metadata/md5-cache/sci-biology/express-1.5.1 +++ b/metadata/md5-cache/sci-biology/express-1.5.1 @@ -10,5 +10,5 @@ LICENSE=Artistic RDEPEND=dev-libs/boost:= dev-libs/protobuf dev-util/google-perftools sci-biology/bamtools sys-libs/zlib SLOT=0 SRC_URI=https://pachterlab.github.io/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz -_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 29a755b1291d64133634d80b0328f153 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 wrapper 4a1902f969e5718126434fc35f3a0d9c xdg-utils ac0e315a3688929e34ac75b139e7349a +_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 29a755b1291d64133634d80b0328f153 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 8ed38f92fe095be374d6c4c8d4c0dda7 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 wrapper 4a1902f969e5718126434fc35f3a0d9c xdg-utils ac0e315a3688929e34ac75b139e7349a _md5_=eb3d3db6cbf83564b8ecca377c50dd20 diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.11 b/metadata/md5-cache/sci-biology/fasttree-2.1.11 index 4499e8c29e5b..ed63888e83ea 100644 --- a/metadata/md5-cache/sci-biology/fasttree-2.1.11 +++ b/metadata/md5-cache/sci-biology/fasttree-2.1.11 @@ -10,5 +10,5 @@ LICENSE=GPL-2 REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 ) SLOT=0 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.11.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.11.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.11.tar.gz -_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 29a755b1291d64133634d80b0328f153 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 wrapper 4a1902f969e5718126434fc35f3a0d9c xdg-utils ac0e315a3688929e34ac75b139e7349a +_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 29a755b1291d64133634d80b0328f153 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 8ed38f92fe095be374d6c4c8d4c0dda7 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 wrapper 4a1902f969e5718126434fc35f3a0d9c xdg-utils ac0e315a3688929e34ac75b139e7349a _md5_=4a94b8db43f0aadb5ece67757ccbe635 diff --git a/metadata/md5-cache/sci-biology/kallisto-0.46.2 b/metadata/md5-cache/sci-biology/kallisto-0.46.2 index 8eb0510223c2..65a0f8fc663f 100644 --- a/metadata/md5-cache/sci-biology/kallisto-0.46.2 +++ b/metadata/md5-cache/sci-biology/kallisto-0.46.2 @@ -12,5 +12,5 @@ RDEPEND=sci-libs/htslib:= sys-libs/zlib:= hdf5? ( sci-libs/hdf5:= ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.46.2.tar.gz -> kallisto-0.46.2.tar.gz -_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 29a755b1291d64133634d80b0328f153 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 wrapper 4a1902f969e5718126434fc35f3a0d9c xdg-utils ac0e315a3688929e34ac75b139e7349a +_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 29a755b1291d64133634d80b0328f153 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 8ed38f92fe095be374d6c4c8d4c0dda7 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 wrapper 4a1902f969e5718126434fc35f3a0d9c xdg-utils ac0e315a3688929e34ac75b139e7349a _md5_=1b739cad0275e6dc5a320723611b78e9 diff --git a/metadata/md5-cache/sci-biology/pysam-0.19.1 b/metadata/md5-cache/sci-biology/pysam-0.19.1 index 5444c4e7ef00..2a026dbd1ca4 100644 --- a/metadata/md5-cache/sci-biology/pysam-0.19.1 +++ b/metadata/md5-cache/sci-biology/pysam-0.19.1 @@ -1,4 +1,4 @@ -BDEPEND=test? ( =sci-biology/bcftools-1.15.1* =sci-biology/samtools-1.15.1* ) test? ( =sci-libs/htslib-1.15.1*:= >=dev-python/pytest-7.1.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.0_beta4:3.11 ) >=dev-python/setuptools-65.3.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] +BDEPEND=test? ( =sci-biology/bcftools-1.15.1* =sci-biology/samtools-1.15.1* ) test? ( =sci-libs/htslib-1.15.1*:= >=dev-python/pytest-7.1.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.0_p2:3.11 ) >=dev-python/setuptools-65.5.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] DEFINED_PHASES=compile configure install prepare test DEPEND==sci-libs/htslib-1.15.1*:= dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format @@ -8,10 +8,10 @@ INHERIT=distutils-r1 IUSE=test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 KEYWORDS=~amd64 ~x86 LICENSE=MIT -RDEPEND==sci-libs/htslib-1.15.1*:= python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.0_beta4:3.11 ) +RDEPEND==sci-libs/htslib-1.15.1*:= python_targets_python3_8? ( >=dev-lang/python-3.8.15_p3:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.15_p3:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.8_p3:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.0_p2:3.11 ) REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.19.1.tar.gz -> pysam-0.19.1.gh.tar.gz -_eclasses_=distutils-r1 8c1ceb6b71a65547b0ea7bc901d906cb multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 b9fc5e97e886514e5132f50465185401 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 +_eclasses_=distutils-r1 da32ffc285e9f13313f2387570e35b87 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 8ed38f92fe095be374d6c4c8d4c0dda7 python-r1 2d51fd03931e743811ce30d198e4dcfd python-utils-r1 25c880c1db58e21b80b684bacc964958 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 _md5_=baed35c86cd8709cd139815786cd17ac diff --git a/metadata/md5-cache/sci-biology/seqan-2.4.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.4.0-r1 index bddc2b49150c..6faa60edeb46 100644 --- a/metadata/md5-cache/sci-biology/seqan-2.4.0-r1 +++ b/metadata/md5-cache/sci-biology/seqan-2.4.0-r1 @@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2:= sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seq REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=0 SRC_URI=https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz -_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 29a755b1291d64133634d80b0328f153 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 wrapper 4a1902f969e5718126434fc35f3a0d9c xdg-utils ac0e315a3688929e34ac75b139e7349a +_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 29a755b1291d64133634d80b0328f153 multibuild d26d81f242cb193d899a72bca423d0bd multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 8ed38f92fe095be374d6c4c8d4c0dda7 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 wrapper 4a1902f969e5718126434fc35f3a0d9c xdg-utils ac0e315a3688929e34ac75b139e7349a _md5_=af3f619bf918af3c15697066b1de20bb diff --git a/metadata/md5-cache/sci-biology/seqan-3.1.0 b/metadata/md5-cache/sci-biology/seqan-3.1.0 index 7d553a7f416b..77f151225251 100644 --- a/metadata/md5-cache/sci-biology/seqan-3.1.0 +++ b/metadata/md5-cache/sci-biology/seqan-3.1.0 @@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2:= dev-cpp/range-v3 dev-libs/cereal sci-libs/lemon sys-lib REQUIRED_USE=cpu_flags_x86_sse4_2 SLOT=0 SRC_URI=https://github.com/seqan/seqan3/releases/download/3.1.0/seqan3-3.1.0-Source.tar.xz -_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d flag-o-matic 29a755b1291d64133634d80b0328f153 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 xdg-utils ac0e315a3688929e34ac75b139e7349a +_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d flag-o-matic 29a755b1291d64133634d80b0328f153 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 8ed38f92fe095be374d6c4c8d4c0dda7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 xdg-utils ac0e315a3688929e34ac75b139e7349a _md5_=327a33751512d78b13d5acd641ba3385 diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 b/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 index 8a953733c9f2..4608458d0cd3 100644 --- a/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 +++ b/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 @@ -8,5 +8,5 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux LICENSE=public-domain SLOT=0 SRC_URI=https://www.drive5.com/uchime/uchime4.2.40_src.tar.gz -_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d flag-o-matic 29a755b1291d64133634d80b0328f153 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 xdg-utils ac0e315a3688929e34ac75b139e7349a +_eclasses_=cmake 44afbf15c35884f7c840470f1cf05d0d flag-o-matic 29a755b1291d64133634d80b0328f153 multilib 5ca4e49abed8e3a2f7b56920eadee157 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 8ed38f92fe095be374d6c4c8d4c0dda7 toolchain-funcs 441f754fd75cd4fd1fa06fbc17da6144 xdg-utils ac0e315a3688929e34ac75b139e7349a _md5_=75e1e97ed1a0b22c90eebd09f4e46d59 |