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-rw-r--r--metadata/md5-cache/sci-biology/GBrowse-2.48-r12
-rw-r--r--metadata/md5-cache/sci-biology/Manifest.gzbin23583 -> 23566 bytes
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-1.6.92
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-db-1.6.92
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r12
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-network-1.6.92
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-run-1.6.92
-rw-r--r--metadata/md5-cache/sci-biology/emboss-6.6.0-r12
-rw-r--r--metadata/md5-cache/sci-biology/mira-4.0.2-r1 (renamed from metadata/md5-cache/sci-biology/mira-4.0.2)6
-rw-r--r--metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r3 (renamed from metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2)6
-rw-r--r--metadata/md5-cache/sci-biology/plink-1.90_pre1405144
-rw-r--r--metadata/md5-cache/sci-biology/trnascan-se-1.312
-rw-r--r--metadata/md5-cache/sci-biology/vcftools-0.1.142
13 files changed, 17 insertions, 17 deletions
diff --git a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
index 6de7e4353fe0..d059b0ddcc02 100644
--- a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
+++ b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
@@ -9,5 +9,5 @@ LICENSE=|| ( Artistic GPL-1+ )
RDEPEND=!<sci-biology/GBrowse-2.44-r1 >=sci-biology/bioperl-1.6.9 >=dev-perl/Bio-Graphics-2.09 >=dev-perl/GD-2.07 >=dev-perl/CGI-Session-4.02 dev-perl/IO-String dev-perl/JSON dev-perl/libwww-perl dev-perl/Statistics-Descriptive !minimal? ( dev-perl/Bio-Das >=dev-perl/Bio-SamTools-1.20 dev-perl/Crypt-SSLeay dev-perl/DB_File-Lock dev-perl/DBI mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) sqlite? ( dev-perl/DBD-SQLite ) dev-perl/FCGI dev-perl/File-NFSLock dev-perl/GD-SVG dev-perl/Net-OpenID-Consumer dev-perl/Net-SMTP-SSL ) dev-lang/perl:=[-build(-)] >=app-admin/webapp-config-1.50.15
SLOT=0
SRC_URI=mirror://cpan/authors/id/L/LD/LDS/GBrowse-2.48.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e l10n 8cdd85e169b835d518bc2fd59f780d8e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f1ee42d38920b69fd6b6229cef80b7f4 perl-module 58b5d72d607014c48b5a1e106318d584 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 unpacker 517f16af48ee3ab88180dd58b5143213 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf webapp 990ad6a000cf18d1ef87117e8c7b0a54 wrapper 4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e l10n 8cdd85e169b835d518bc2fd59f780d8e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions fea344a91ebf37efadf172c6a3de5a72 perl-module fe87099fddad9ba492e2b99367e39063 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 unpacker 517f16af48ee3ab88180dd58b5143213 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf webapp 990ad6a000cf18d1ef87117e8c7b0a54 wrapper 4251d4c84c25f59094fd557e0063a974
_md5_=088b19055886b41078acab0f96df204a
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index f1c2a2eb9d65..1185f8217644 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
Binary files differ
diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-1.6.9
index b828017309a1..baf3df824b75 100644
--- a/metadata/md5-cache/sci-biology/bioperl-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9
@@ -11,5 +11,5 @@ RDEPEND=dev-perl/libwww-perl !minimal? ( dev-perl/Algorithm-Munkres dev-perl/Arr
REQUIRED_USE=minimal? ( !graphviz )
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e l10n 8cdd85e169b835d518bc2fd59f780d8e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f1ee42d38920b69fd6b6229cef80b7f4 perl-module 58b5d72d607014c48b5a1e106318d584 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 unpacker 517f16af48ee3ab88180dd58b5143213 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e l10n 8cdd85e169b835d518bc2fd59f780d8e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions fea344a91ebf37efadf172c6a3de5a72 perl-module fe87099fddad9ba492e2b99367e39063 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 unpacker 517f16af48ee3ab88180dd58b5143213 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974
_md5_=8a48cf5c6cd3d568ec12cc4fdb88021b
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
index 4c787dc1bb60..913ad1c1ce68 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/
RESTRICT=test
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e l10n 8cdd85e169b835d518bc2fd59f780d8e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f1ee42d38920b69fd6b6229cef80b7f4 perl-module 58b5d72d607014c48b5a1e106318d584 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 unpacker 517f16af48ee3ab88180dd58b5143213 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e l10n 8cdd85e169b835d518bc2fd59f780d8e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions fea344a91ebf37efadf172c6a3de5a72 perl-module fe87099fddad9ba492e2b99367e39063 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 unpacker 517f16af48ee3ab88180dd58b5143213 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974
_md5_=2470d7ecf1b6ff1902a8d74057748480
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1
index f02a3037cea3..7d8a418ec947 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/
RESTRICT=test
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz
-_eclasses_=multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f1ee42d38920b69fd6b6229cef80b7f4 perl-module 58b5d72d607014c48b5a1e106318d584
+_eclasses_=multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions fea344a91ebf37efadf172c6a3de5a72 perl-module fe87099fddad9ba492e2b99367e39063
_md5_=d406c809bbde4bce1c891731bbbd6803
diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
index c2dddb95952f..0810f3461201 100644
--- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e l10n 8cdd85e169b835d518bc2fd59f780d8e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f1ee42d38920b69fd6b6229cef80b7f4 perl-module 58b5d72d607014c48b5a1e106318d584 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 unpacker 517f16af48ee3ab88180dd58b5143213 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e l10n 8cdd85e169b835d518bc2fd59f780d8e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions fea344a91ebf37efadf172c6a3de5a72 perl-module fe87099fddad9ba492e2b99367e39063 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 unpacker 517f16af48ee3ab88180dd58b5143213 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974
_md5_=8f7c4053ffbec76cfad29cca2d99847b
diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
index 1496870472af..827486850ef1 100644
--- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 !minimal? ( dev-perl/Algorithm-Diff dev-perl
RESTRICT=test
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e l10n 8cdd85e169b835d518bc2fd59f780d8e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f1ee42d38920b69fd6b6229cef80b7f4 perl-module 58b5d72d607014c48b5a1e106318d584 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 unpacker 517f16af48ee3ab88180dd58b5143213 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e l10n 8cdd85e169b835d518bc2fd59f780d8e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions fea344a91ebf37efadf172c6a3de5a72 perl-module fe87099fddad9ba492e2b99367e39063 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 unpacker 517f16af48ee3ab88180dd58b5143213 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974
_md5_=990b4cff1e1e1338ee686efddaad7810
diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
index 8195336423c3..96c616a7ba1a 100644
--- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
+++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
@@ -11,5 +11,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci
RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz
-_eclasses_=autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 93f4f6ac626ed63f042344dd76574b41 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic bc2e7662a4a9a8643be851982a837ddc gnuconfig 9f91b4b0c84e734a87492d4293f03de5 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 multilib ebdbaed22e873a5abe6205f41349b479 readme.gentoo-r1 22ae82e140bdd95d17a34fd5fd733190 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 wrapper 4251d4c84c25f59094fd557e0063a974
+_eclasses_=autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 emboss-r2 93f4f6ac626ed63f042344dd76574b41 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic bc2e7662a4a9a8643be851982a837ddc gnuconfig 9f91b4b0c84e734a87492d4293f03de5 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 multilib ebdbaed22e873a5abe6205f41349b479 readme.gentoo-r1 e51390d48521eb3d400db57d557b7530 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 wrapper 4251d4c84c25f59094fd557e0063a974
_md5_=72c86b427ea83b8feb792884f23feaf3
diff --git a/metadata/md5-cache/sci-biology/mira-4.0.2 b/metadata/md5-cache/sci-biology/mira-4.0.2-r1
index 98f27503ab61..160081db2c55 100644
--- a/metadata/md5-cache/sci-biology/mira-4.0.2
+++ b/metadata/md5-cache/sci-biology/mira-4.0.2-r1
@@ -1,13 +1,13 @@
DEFINED_PHASES=configure install postinst prepare
-DEPEND=dev-libs/boost[threads] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-libs/boost:=[threads(+)] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
DESCRIPTION=Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Illumina
EAPI=6
HOMEPAGE=http://www.chevreux.org/projects_mira.html
IUSE=doc
KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
LICENSE=GPL-2
-RDEPEND=dev-libs/boost[threads] dev-util/google-perftools
+RDEPEND=dev-libs/boost:=[threads(+)] dev-util/google-perftools
SLOT=0
SRC_URI=https://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira-4.0.2.tar.bz2 mirror://sourceforge/mira-assembler/mira_3rdparty_06-07-2012.tar.bz2
_eclasses_=autotools 9e63f92c2a5d867fea55ecb160c7d354 desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974
-_md5_=43c171b4d4fe8641b5d27f17ad50b957
+_md5_=7d807f37f8dfc41b66f293797784f472
diff --git a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r3
index bb3d326c22ea..b938d91e2722 100644
--- a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2
+++ b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r3
@@ -1,13 +1,13 @@
DEFINED_PHASES=compile install prepare setup
-DEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= X? ( media-libs/fontconfig x11-libs/motif:0= x11-libs/libICE x11-libs/libX11 x11-libs/libXft x11-libs/libXmu x11-libs/libXt ) virtual/pkgconfig
+DEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= virtual/glu virtual/opengl X? ( media-libs/fontconfig x11-libs/motif:0= x11-libs/libICE x11-libs/libX11 x11-libs/libXft x11-libs/libXmu x11-libs/libXt ) virtual/pkgconfig
DESCRIPTION=Development toolkit and applications for computational biology, including BLAST
EAPI=5
HOMEPAGE=https://www.ncbi.nlm.nih.gov/
IUSE=doc static-libs X
KEYWORDS=~alpha amd64 ppc64 x86 ~amd64-linux ~x86-linux ~ppc-macos
LICENSE=public-domain
-RDEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= X? ( media-libs/fontconfig x11-libs/motif:0= x11-libs/libICE x11-libs/libX11 x11-libs/libXft x11-libs/libXmu x11-libs/libXt )
+RDEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= virtual/glu virtual/opengl X? ( media-libs/fontconfig x11-libs/motif:0= x11-libs/libICE x11-libs/libX11 x11-libs/libXft x11-libs/libXmu x11-libs/libXt )
SLOT=0
SRC_URI=ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.26/ncbi.tar.gz -> ncbi-tools-2.2.26.tar.gz
_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic bc2e7662a4a9a8643be851982a837ddc l10n 8cdd85e169b835d518bc2fd59f780d8e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 prefix de7d8e2b10085ed5ff09ad70e4753e5c preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974
-_md5_=f4fd3d16b0f57ddd5ddff7eb3342f37e
+_md5_=4a060d3447bfe5e557c4831b3fc8fad9
diff --git a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 b/metadata/md5-cache/sci-biology/plink-1.90_pre140514
index 8d2cca7d5e8e..cfe732b30322 100644
--- a/metadata/md5-cache/sci-biology/plink-1.90_pre140514
+++ b/metadata/md5-cache/sci-biology/plink-1.90_pre140514
@@ -1,5 +1,5 @@
DEFINED_PHASES=compile install prepare
-DEPEND=app-arch/unzip virtual/pkgconfig
+DEPEND=sys-libs/zlib virtual/cblas virtual/lapack app-arch/unzip virtual/pkgconfig
DESCRIPTION=Whole genome association analysis toolset
EAPI=5
HOMEPAGE=http://pngu.mgh.harvard.edu/~purcell/plink/
@@ -9,4 +9,4 @@ RDEPEND=sys-libs/zlib virtual/cblas virtual/lapack
SLOT=0
SRC_URI=http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> plink-1.90_pre140514.zip
_eclasses_=multilib ebdbaed22e873a5abe6205f41349b479 toolchain-funcs 24921b57d6561d87cbef4916a296ada4
-_md5_=84c4fdcaa7feed7785c42d566070ab94
+_md5_=e1f50da3f99cd26238e4ef37a7de379a
diff --git a/metadata/md5-cache/sci-biology/trnascan-se-1.31 b/metadata/md5-cache/sci-biology/trnascan-se-1.31
index 5bd45fb654a6..2006694e039f 100644
--- a/metadata/md5-cache/sci-biology/trnascan-se-1.31
+++ b/metadata/md5-cache/sci-biology/trnascan-se-1.31
@@ -6,5 +6,5 @@ KEYWORDS=amd64 x86
LICENSE=GPL-2
SLOT=0
SRC_URI=http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> trnascan-se-1.31.tar.gz
-_eclasses_=multilib ebdbaed22e873a5abe6205f41349b479 perl-functions f1ee42d38920b69fd6b6229cef80b7f4 toolchain-funcs 24921b57d6561d87cbef4916a296ada4
+_eclasses_=multilib ebdbaed22e873a5abe6205f41349b479 perl-functions fea344a91ebf37efadf172c6a3de5a72 toolchain-funcs 24921b57d6561d87cbef4916a296ada4
_md5_=3f4bcdf31fe276f90a95e2f4b311deae
diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.14 b/metadata/md5-cache/sci-biology/vcftools-0.1.14
index 99f26f5cf11f..7fd2eb537cf8 100644
--- a/metadata/md5-cache/sci-biology/vcftools-0.1.14
+++ b/metadata/md5-cache/sci-biology/vcftools-0.1.14
@@ -9,5 +9,5 @@ LICENSE=LGPL-3
RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack )
SLOT=0
SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz
-_eclasses_=autotools 9e63f92c2a5d867fea55ecb160c7d354 desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic bc2e7662a4a9a8643be851982a837ddc gnuconfig 9f91b4b0c84e734a87492d4293f03de5 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 perl-functions f1ee42d38920b69fd6b6229cef80b7f4 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974
+_eclasses_=autotools 9e63f92c2a5d867fea55ecb160c7d354 desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic bc2e7662a4a9a8643be851982a837ddc gnuconfig 9f91b4b0c84e734a87492d4293f03de5 l10n 8cdd85e169b835d518bc2fd59f780d8e libtool f143db5a74ccd9ca28c1234deffede96 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib ebdbaed22e873a5abe6205f41349b479 perl-functions fea344a91ebf37efadf172c6a3de5a72 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974
_md5_=82adffd84f2a93745e683b498b79fbe8
generated by cgit v1.2.3 (git 2.25.1) at 2024-08-17 06:25:30 +0000