diff options
Diffstat (limited to 'metadata/md5-cache/sci-biology')
60 files changed, 92 insertions, 106 deletions
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz Binary files differindex 70168840de41..5035dd039a13 100644 --- a/metadata/md5-cache/sci-biology/Manifest.gz +++ b/metadata/md5-cache/sci-biology/Manifest.gz diff --git a/metadata/md5-cache/sci-biology/abyss-2.3.4 b/metadata/md5-cache/sci-biology/abyss-2.3.4 index e43fd83bcb57..e5ef6501d1c7 100644 --- a/metadata/md5-cache/sci-biology/abyss-2.3.4 +++ b/metadata/md5-cache/sci-biology/abyss-2.3.4 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure prepare pretend setup DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) sys-cluster/openmpi dev-db/sqlite:3 misc-haskell? ( dev-lang/ghc ) DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler @@ -11,5 +11,5 @@ LICENSE=GPL-3 RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) sys-cluster/openmpi dev-db/sqlite:3 SLOT=0 SRC_URI=https://github.com/bcgsc/abyss/archive/2.3.4.tar.gz -> abyss-2.3.4.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=498079fc466ad15118faea6d1635cce8 diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.2 b/metadata/md5-cache/sci-biology/bamtools-2.5.2 index ef5bb851210d..32222fa67d58 100644 --- a/metadata/md5-cache/sci-biology/bamtools-2.5.2 +++ b/metadata/md5-cache/sci-biology/bamtools-2.5.2 @@ -10,5 +10,5 @@ LICENSE=MIT RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= SLOT=0/2.5.2 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.2.tar.gz -> bamtools-2.5.2.tar.gz -_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3 +_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3 _md5_=efdfbdbf4181a018ee9965d5c16be71f diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999 index 2eb80286352b..4d0947f0763b 100644 --- a/metadata/md5-cache/sci-biology/bamtools-9999 +++ b/metadata/md5-cache/sci-biology/bamtools-9999 @@ -9,5 +9,5 @@ LICENSE=MIT PROPERTIES=live RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= SLOT=0/9999 -_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic d309b9713dfc18e754cba88d3ba69653 git-r3 fbb2889c81f3a05910c1524db69425c1 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3 +_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic e503ea5acc20410237ba33ec3f7c857d git-r3 875eb471682d3e1f18da124be97dcc81 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3 _md5_=a2299dc6ca850c1c25582656d7586681 diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a index 9593fd22378d..545997942dda 100644 --- a/metadata/md5-cache/sci-biology/bfast-0.7.0a +++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=prepare DESCRIPTION=Blat-like Fast Accurate Search Tool EAPI=7 @@ -11,5 +11,5 @@ RDEPEND=dev-perl/XML-Simple RESTRICT=test SLOT=0 SRC_URI=https://downloads.sourceforge.net/bfast/bfast-0.7.0a.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=de9f50a6363291c4ea76ed050d9b2dfb diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r3 b/metadata/md5-cache/sci-biology/biogrep-1.0-r3 index fa358da4a700..f20a4155372f 100644 --- a/metadata/md5-cache/sci-biology/biogrep-1.0-r3 +++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r3 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=install prepare DESCRIPTION=Multithreaded tool for matching large sets of patterns against biosequence DBs EAPI=8 @@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf ) -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=18fc653ace8feaf53e4d1c1818b7b00c diff --git a/metadata/md5-cache/sci-biology/biopython-1.81-r1 b/metadata/md5-cache/sci-biology/biopython-1.81-r1 index baa7772a22aa..cbc1fdb18015 100644 --- a/metadata/md5-cache/sci-biology/biopython-1.81-r1 +++ b/metadata/md5-cache/sci-biology/biopython-1.81-r1 @@ -12,5 +12,5 @@ RDEPEND=dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_pytho REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 ) SLOT=0 SRC_URI=https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.81.tar.gz -_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic d309b9713dfc18e754cba88d3ba69653 multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 optfeature 222cb475c5a4f7ae7cfb0bf510a6fe54 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 pypi 2eecb475512bc76e5ea9192a681b9e6b python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 optfeature 222cb475c5a4f7ae7cfb0bf510a6fe54 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 pypi 2eecb475512bc76e5ea9192a681b9e6b python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=82f098dc006d74b880969c95dbd7e786 diff --git a/metadata/md5-cache/sci-biology/bwa-0.7.17 b/metadata/md5-cache/sci-biology/bwa-0.7.17 index 3bd6a47e7c5e..b63d30afa20b 100644 --- a/metadata/md5-cache/sci-biology/bwa-0.7.17 +++ b/metadata/md5-cache/sci-biology/bwa-0.7.17 @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=sys-libs/zlib dev-lang/perl SLOT=0 SRC_URI=https://github.com/lh3/bwa/archive/v0.7.17.tar.gz -> bwa-0.7.17.tar.gz -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=ba2dadcc176ba326d1290485ff909d7f diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1 index d2db631c740e..afeecb701ec5 100644 --- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1 +++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=install prepare DEPEND=dev-libs/argtable DESCRIPTION=Scalable multiple alignment of protein sequences @@ -10,5 +10,5 @@ LICENSE=GPL-2 RDEPEND=dev-libs/argtable SLOT=0 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=e2928c88a8676586ff3c5e4a7f534608 diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1 index b08be34eb4e6..6ce66dede6b8 100644 --- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Applications from the CBS group @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=56469e1c3bb7c4baac8ad99638b59ff0 diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1 index f030eb5f0e68..7f89af0b8a9d 100644 --- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Clustal Omega - Multiple Sequence Alignment @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=864a13621791118f794da4601dcde749 diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1 index 2fe45afdcb20..e60aae4da4c0 100644 --- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain analysis add-on package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=af29c98cab7134ba05c6d874e37d95dc diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1 index 1499b9f1f948..e494c0206bc0 100644 --- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain alignment add-on package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=677a5e171c80e94969c1ab9c0b55e283 diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1 index 521a9e07b293..d43adc387036 100644 --- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain search add-on package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=e0ca10c2776835b0cd20c1b0f0721a1a diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1 index 01ffc5fa328d..965f76a2f08b 100644 --- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Simple menu of EMBOSS applications @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=a33d45b5be798e7ebfcef8c59a300c88 diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1 index a95f67a130ef..e733353660ed 100644 --- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=95026ca22c2bacedf52a70b4428e7753 diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1 index 59487c6b3c58..f48d43ce0e2d 100644 --- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of HMMER wrapper - sequence analysis with profile HMMs @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=fb64fb071ec661ab550e0b33bc78b536 diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1 index d22eab4dd595..db5ff8f3b51f 100644 --- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of InterProScan motif detection add-on package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=06b3cb4ecb53ada6b96c0f8fe91680e9 diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1 index 584f557004b5..b7cceaa44af5 100644 --- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=sys-libs/ncurses:= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of MSE - Multiple Sequence Screen Editor @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sys-libs/ncurses:= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=b6d66fbfe89f6c64f635551357dc90f4 diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1 index b6af18e05b2f..bbbc6e64c9af 100644 --- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of The Phylogeny Inference Package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 free-noncomm RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=93c762366f9cfe8fbfdffd0fdc0483d5 diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1 index d083aae78492..44c8eee950e5 100644 --- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Protein signature add-on package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=193e23282bfd7f7751d7e37988a0ec44 diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1 index f9a5ea3434c6..3196d82de3e5 100644 --- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Protein structure add-on package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=c54138383c80476f9d515e5e2a33acaf diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1 index a1cfb1eea023..5cf9ee777b44 100644 --- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Transmembrane protein display @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=30ddf1c7471e11d692477ffa5a3a9956 diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1 index 4b510aeb9fa3..b999e8a74dc9 100644 --- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1 +++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Vienna RNA package - RNA folding @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=ba0cdfe4fa4ef35b15cb45a53f81f3b7 diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r3 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r3 index 201f9869872f..3d61cd8b130a 100644 --- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r3 +++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r3 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install postinst prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) DESCRIPTION=The European Molecular Biology Open Software Suite - A sequence analysis package @@ -12,5 +12,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci RDEPEND=!dev-build/cons !games-action/xbomber dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz https://dev.gentoo.org/~soap/distfiles/emboss-6.6.0-patches-r1.tar.xz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 readme.gentoo-r1 b8c7a61664027641d79dcfc04bd366f4 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=70b903dc25a6c63638148281283a607c diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d-r1 b/metadata/md5-cache/sci-biology/eugene-4.1d-r1 index 7b8f98138d06..0115b8e59ecf 100644 --- a/metadata/md5-cache/sci-biology/eugene-4.1d-r1 +++ b/metadata/md5-cache/sci-biology/eugene-4.1d-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=prepare DEPEND=media-libs/gd[png] media-libs/libpng:= DESCRIPTION=Prokaryotic and Eukaryotic gene predictor @@ -11,5 +11,5 @@ RDEPEND=media-libs/gd[png] media-libs/libpng:= RESTRICT=test SLOT=0 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=88a096386941104cea7615974ecef526 diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3 index ff98d9e03603..59369b3b619d 100644 --- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3 +++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/glib:2 DESCRIPTION=Generic tool for pairwise sequence comparison @@ -13,5 +13,5 @@ REQUIRED_USE=test? ( utils ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=10bdf3d183405e86dbde847391344239 diff --git a/metadata/md5-cache/sci-biology/fasta-36.3.8h-r1 b/metadata/md5-cache/sci-biology/fasta-36.3.8h-r1 index 9732745c8cfd..52fe17da1104 100644 --- a/metadata/md5-cache/sci-biology/fasta-36.3.8h-r1 +++ b/metadata/md5-cache/sci-biology/fasta-36.3.8h-r1 @@ -10,5 +10,5 @@ LICENSE=fasta RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/wrpearson/fasta36/archive/refs/tags/v36.3.8h_04-May-2020.tar.gz -> fasta-36.3.8h.tar.gz -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=741f3be1a17b816aabab39443236f37b diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.11 b/metadata/md5-cache/sci-biology/fasttree-2.1.11 index 3e97e5e4f36e..1b38f222ff3a 100644 --- a/metadata/md5-cache/sci-biology/fasttree-2.1.11 +++ b/metadata/md5-cache/sci-biology/fasttree-2.1.11 @@ -10,5 +10,5 @@ LICENSE=GPL-2 REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 ) SLOT=0 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.11.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.11.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.11.tar.gz -_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3 +_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3 _md5_=4a94b8db43f0aadb5ece67757ccbe635 diff --git a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1 b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1 index a059e4bcd092..3549cb0785b1 100644 --- a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1 +++ b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1 @@ -1,4 +1,4 @@ -BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=prepare DEPEND=sci-biology/libgtextutils:= DESCRIPTION=Tools for Short Read FASTA/FASTQ file processing @@ -10,5 +10,5 @@ LICENSE=AGPL-3 RDEPEND=sci-biology/libgtextutils:= dev-perl/PerlIO-gzip dev-perl/GDGraph sci-visualization/gnuplot SLOT=0 SRC_URI=https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2 -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=e0ed8e935eca944dc874fee38c4435ad diff --git a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r6 b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r6 index 4a814dcf3ca3..49ac9a977dfd 100644 --- a/metadata/md5-cache/sci-biology/hmmer-2.3.2-r6 +++ b/metadata/md5-cache/sci-biology/hmmer-2.3.2-r6 @@ -10,5 +10,5 @@ LICENSE=GPL-2 RESTRICT=!test? ( test ) SLOT=2 SRC_URI=http://eddylab.org/software/hmmer/2.3.2/hmmer-2.3.2.tar.gz -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=1fd6f0b99211b2fc58ba46d98f53bf58 diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r2 b/metadata/md5-cache/sci-biology/iedera-1.05-r2 index 494e88f52cca..aba078168174 100644 --- a/metadata/md5-cache/sci-biology/iedera-1.05-r2 +++ b/metadata/md5-cache/sci-biology/iedera-1.05-r2 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=prepare DESCRIPTION=Subset seed design tool for DNA sequence alignment EAPI=8 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=c1df71458cdeda01ad17b744ef31dc36 diff --git a/metadata/md5-cache/sci-biology/kallisto-0.46.2-r1 b/metadata/md5-cache/sci-biology/kallisto-0.46.2-r1 index 4c790f26f520..baa9a30a83c8 100644 --- a/metadata/md5-cache/sci-biology/kallisto-0.46.2-r1 +++ b/metadata/md5-cache/sci-biology/kallisto-0.46.2-r1 @@ -12,5 +12,5 @@ RDEPEND=sci-libs/htslib:= sys-libs/zlib:= hdf5? ( sci-libs/hdf5:= ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.46.2.tar.gz -> kallisto-0.46.2.tar.gz -_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3 +_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3 _md5_=910bb7d511b17acfbd0b6cd49c0fc114 diff --git a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1 b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1 index 24021b579a20..9071715cccf5 100644 --- a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1 +++ b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=install prepare DESCRIPTION=Gordon Text utils Library EAPI=8 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=AGPL-3 SLOT=0/0 SRC_URI=http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2 -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=bf69c3370f31858d1ff072c30305ca99 diff --git a/metadata/md5-cache/sci-biology/mafft-7.490 b/metadata/md5-cache/sci-biology/mafft-7.490 index 720b403d75f7..2582d59e24d1 100644 --- a/metadata/md5-cache/sci-biology/mafft-7.490 +++ b/metadata/md5-cache/sci-biology/mafft-7.490 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos LICENSE=BSD SLOT=0 SRC_URI=https://mafft.cbrc.jp/alignment/software/mafft-7.490-without-extensions-src.tgz -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=04971be2bc4044a9c136d12a7e51b23d diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r4 b/metadata/md5-cache/sci-biology/maq-0.7.1-r4 index 2183f75a627e..ad137eccee16 100644 --- a/metadata/md5-cache/sci-biology/maq-0.7.1-r4 +++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r4 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=install prepare DEPEND=sys-libs/zlib DESCRIPTION=Mapping and Assembly with Qualities, mapping NGS reads to reference genomes @@ -10,5 +10,5 @@ LICENSE=GPL-3 RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=https://downloads.sourceforge.net/maq/maq-0.7.1.tar.bz2 https://downloads.sourceforge.net/maq/calib-36.dat.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=3ce78ae7f9c21ec3fcfe0096f0b6f814 diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r5 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r5 index c0b8910b5265..5099facd2dde 100644 --- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r5 +++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r5 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=prepare DEPEND=media-libs/freeglut sys-libs/zlib DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler @@ -10,5 +10,5 @@ LICENSE=GPL-3 RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq SLOT=0 SRC_URI=https://downloads.sourceforge.net/maq/maqview-0.2.5.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=ff137cbddb3451a621dbf212ee4a6fe8 diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137 index ba3564cbbae0..3801589ea67c 100644 --- a/metadata/md5-cache/sci-biology/mcl-14.137 +++ b/metadata/md5-cache/sci-biology/mcl-14.137 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure prepare DESCRIPTION=A Markov Cluster Algorithm implementation EAPI=7 @@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=9779366f51f2fea08274072a9a019159 diff --git a/metadata/md5-cache/sci-biology/mosaik-2.2.30 b/metadata/md5-cache/sci-biology/mosaik-2.2.30 index bb4a05afbdf2..ee216959610f 100644 --- a/metadata/md5-cache/sci-biology/mosaik-2.2.30 +++ b/metadata/md5-cache/sci-biology/mosaik-2.2.30 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://github.com/wanpinglee/MOSAIK/archive/5c25216d3522d6a33e53875cd76a6d65001e4e67.tar.gz -> mosaik-2.2.30.tar.gz -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 vcs-snapshot eab6d8533446763c2e9777d8bbd1594e +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 vcs-snapshot 3d327d546f76e4c2054573ff0d78fad2 _md5_=b275a0e18dbe85d2a2e24cebc796c134 diff --git a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 index 088bdf0669ff..c3222f89dbd2 100644 --- a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 +++ b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 @@ -11,5 +11,5 @@ LICENSE=GPL-3 RDEPEND=sci-biology/uchime mpi? ( virtual/mpi ) virtual/fortran SLOT=0 SRC_URI=https://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip -> mothur-1.27.0.zip -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=4d1c6c16f8757994256f73d5be45cb8f diff --git a/metadata/md5-cache/sci-biology/mothur-1.48.0 b/metadata/md5-cache/sci-biology/mothur-1.48.0 index dc2ec5f731cf..69849afb2a78 100644 --- a/metadata/md5-cache/sci-biology/mothur-1.48.0 +++ b/metadata/md5-cache/sci-biology/mothur-1.48.0 @@ -10,5 +10,5 @@ LICENSE=GPL-3 RDEPEND=sci-biology/uchime boost? ( dev-libs/boost:=[zlib] ) gsl? ( sci-libs/gsl:= ) hdf5? ( sci-libs/hdf5:=[cxx] ) mpi? ( virtual/mpi ) SLOT=0 SRC_URI=https://github.com/mothur/mothur/archive/refs/tags/v1.48.0.tar.gz -> mothur-1.48.0.tar.gz -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=2af03a020fdefd5d2d9a08ecc098d287 diff --git a/metadata/md5-cache/sci-biology/mummer-3.23-r1 b/metadata/md5-cache/sci-biology/mummer-3.23-r1 index f661c1fcf543..89697e4f70b2 100644 --- a/metadata/md5-cache/sci-biology/mummer-3.23-r1 +++ b/metadata/md5-cache/sci-biology/mummer-3.23-r1 @@ -9,5 +9,5 @@ LICENSE=Artistic RDEPEND=app-shells/tcsh dev-lang/perl SLOT=0 SRC_URI=https://downloads.sourceforge.net/mummer/MUMmer3.23.tar.gz -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=6c017adea5c77f3b2646f4b5947bcd7a diff --git a/metadata/md5-cache/sci-biology/muscle-3.8.31 b/metadata/md5-cache/sci-biology/muscle-3.8.31 index 52cda6293db7..cab3aab4b43b 100644 --- a/metadata/md5-cache/sci-biology/muscle-3.8.31 +++ b/metadata/md5-cache/sci-biology/muscle-3.8.31 @@ -8,5 +8,5 @@ LICENSE=public-domain RDEPEND=!sci-libs/libmuscle SLOT=0 SRC_URI=https://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=46bd2dd5a3f5b38a212ff48669d0939c diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.6-r2 b/metadata/md5-cache/sci-biology/newick-utils-1.6-r2 index d5681db8b21a..8f98f57128de 100644 --- a/metadata/md5-cache/sci-biology/newick-utils-1.6-r2 +++ b/metadata/md5-cache/sci-biology/newick-utils-1.6-r2 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install prepare DEPEND=xml? ( dev-libs/libxml2 ) DESCRIPTION=Tools for processing phylogenetic trees @@ -11,5 +11,5 @@ LICENSE=BSD RDEPEND=xml? ( dev-libs/libxml2 ) !dev-games/libnw SLOT=0 SRC_URI=https://web.archive.org/web/20120126210029if_/http://cegg.unige.ch/pub/newick-utils-1.6.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=f8324170fb990264d927dcd509f5898e diff --git a/metadata/md5-cache/sci-biology/phylip-3.698 b/metadata/md5-cache/sci-biology/phylip-3.698 index 3e67d2725ab4..385858d73bc0 100644 --- a/metadata/md5-cache/sci-biology/phylip-3.698 +++ b/metadata/md5-cache/sci-biology/phylip-3.698 @@ -10,5 +10,5 @@ LICENSE=BSD-2 RDEPEND=x11-libs/libXaw !dev-lang/elixir SLOT=0 SRC_URI=http://evolution.gs.washington.edu/phylip/download/phylip-3.698.zip -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=b3a777c086ea4a6cd489efcb5bde7b66 diff --git a/metadata/md5-cache/sci-biology/pysam-0.22.1 b/metadata/md5-cache/sci-biology/pysam-0.22.1 index 3c26386ad024..f2c61e941716 100644 --- a/metadata/md5-cache/sci-biology/pysam-0.22.1 +++ b/metadata/md5-cache/sci-biology/pysam-0.22.1 @@ -13,5 +13,5 @@ REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 python_tar RESTRICT=!test? ( test ) SLOT=0 SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.22.1.tar.gz -> pysam-0.22.1.gh.tar.gz -_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic d309b9713dfc18e754cba88d3ba69653 multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=a742eeecf26e6de57df273759b8491aa diff --git a/metadata/md5-cache/sci-biology/pysam-9999 b/metadata/md5-cache/sci-biology/pysam-9999 index f4144bf176e6..1c15df918e04 100644 --- a/metadata/md5-cache/sci-biology/pysam-9999 +++ b/metadata/md5-cache/sci-biology/pysam-9999 @@ -12,5 +12,5 @@ RDEPEND=>=sci-libs/htslib-1.17 python_targets_python3_10? ( dev-lang/python:3.10 REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 ) RESTRICT=!test? ( test ) SLOT=0 -_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic d309b9713dfc18e754cba88d3ba69653 git-r3 fbb2889c81f3a05910c1524db69425c1 multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=distutils-r1 f11e1bc907da246e941fbae648327823 flag-o-matic e503ea5acc20410237ba33ec3f7c857d git-r3 875eb471682d3e1f18da124be97dcc81 multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 428f5c53276c2adc06a89108fc2f9f46 python-utils-r1 8b220bbce5c119fb1d4d5c2f5588f3ea toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=bcdb07ed2c7ed322810daba181d02da3 diff --git a/metadata/md5-cache/sci-biology/raxml-8.2.13 b/metadata/md5-cache/sci-biology/raxml-8.2.13 index 560edd6c6a8a..cc11a942f0f2 100644 --- a/metadata/md5-cache/sci-biology/raxml-8.2.13 +++ b/metadata/md5-cache/sci-biology/raxml-8.2.13 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://github.com/stamatak/standard-RAxML/archive/refs/tags/v8.2.13.tar.gz -> raxml-8.2.13.tar.gz -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=b1b4de0bedc435411038a43f078ba175 diff --git a/metadata/md5-cache/sci-biology/seqan-3.1.0 b/metadata/md5-cache/sci-biology/seqan-3.1.0 index f86706b11e61..41d98b87df5a 100644 --- a/metadata/md5-cache/sci-biology/seqan-3.1.0 +++ b/metadata/md5-cache/sci-biology/seqan-3.1.0 @@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2:= dev-cpp/range-v3 dev-libs/cereal sci-libs/lemon sys-lib REQUIRED_USE=cpu_flags_x86_sse4_2 SLOT=0 SRC_URI=https://github.com/seqan/seqan3/releases/download/3.1.0/seqan3-3.1.0-Source.tar.xz -_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3 +_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3 _md5_=327a33751512d78b13d5acd641ba3385 diff --git a/metadata/md5-cache/sci-biology/t-coffee-11.00-r3 b/metadata/md5-cache/sci-biology/t-coffee-11.00-r3 index c4bc2d4c7359..dce98a0266db 100644 --- a/metadata/md5-cache/sci-biology/t-coffee-11.00-r3 +++ b/metadata/md5-cache/sci-biology/t-coffee-11.00-r3 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=sci-biology/clustalw sci-chemistry/tm-align SLOT=0 SRC_URI=http://www.tcoffee.org/Packages/Beta/Latest/T-COFFEE_distribution_Version_11.00.4466924.tar.gz -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=489f3794f3d0f3e0bf26ffb6c031578d diff --git a/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1 b/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1 index 70ec005ab914..bf90317966be 100644 --- a/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1 +++ b/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=compile configure install prepare DEPEND=mpi? ( virtual/mpi ) DESCRIPTION=Maximum likelihood analysis for nucleotide, amino acid, and two-state data @@ -12,5 +12,5 @@ RDEPEND=mpi? ( virtual/mpi ) RESTRICT=test SLOT=0 SRC_URI=http://www.tree-puzzle.de/tree-puzzle-5.2.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=311ab90a26514547300841edfb24e436 diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 deleted file mode 100644 index 012dcef93062..000000000000 --- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 +++ /dev/null @@ -1,14 +0,0 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 -DEFINED_PHASES=configure prepare -DEPEND=x11-libs/wxGTK:3.0[X] -DESCRIPTION=A phylogenetic tree viewer -EAPI=7 -HOMEPAGE=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/ -INHERIT=autotools wxwidgets -KEYWORDS=amd64 ~x86 -LICENSE=GPL-2 -RDEPEND=x11-libs/wxGTK:3.0[X] -SLOT=0 -SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5 -_md5_=c7a6fb1f3ee6436d674328487c021a24 diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4 index 5b924bc6600e..80aca953b110 100644 --- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4 +++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure install postinst postrm preinst prepare DEPEND=x11-libs/wxGTK:3.2-gtk3[X] DESCRIPTION=A phylogenetic tree viewer @@ -11,5 +11,5 @@ LICENSE=GPL-2 RDEPEND=x11-libs/wxGTK:3.2-gtk3[X] SLOT=0 SRC_URI=https://github.com/rdmpage/treeviewx/archive/7e4d0e96dfdde51a92a1634b41d7284142a19afa.tar.gz -> treeviewx-0.5.1.20100823_p4.tar.gz mirror://debian/pool/main/t/treeviewx/treeviewx_0.5.1+git20100823.7e4d0e9-4.debian.tar.xz https://dev.gentoo.org/~pacho/treeviewx/treeviewx_128.png -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3 _md5_=717085213272cc84290050e8716b9f37 diff --git a/metadata/md5-cache/sci-biology/trnascan-se-1.31-r3 b/metadata/md5-cache/sci-biology/trnascan-se-1.31-r3 index 25264b75db2e..c6da8efd336b 100644 --- a/metadata/md5-cache/sci-biology/trnascan-se-1.31-r3 +++ b/metadata/md5-cache/sci-biology/trnascan-se-1.31-r3 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl:= SLOT=0 SRC_URI=http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> trnascan-se-1.31.tar.gz -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 perl-functions c3fca037246e877693badea0df3b0ef8 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 perl-functions c3fca037246e877693badea0df3b0ef8 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=52e449bd6a1f0b9bd42d7eaedfc1d9e6 diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 b/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 index 43d7a2c118e8..fbcee16d4c9f 100644 --- a/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 +++ b/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 @@ -8,5 +8,5 @@ KEYWORDS=amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=public-domain SLOT=0 SRC_URI=https://www.drive5.com/uchime/uchime4.2.40_src.tar.gz -_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3 +_eclasses_=cmake 258a4691fd43b8cd5814cb1acbb3c7df flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 xdg-utils baea6080dd821f5562d715887954c9d3 _md5_=d6d5b7ba215fd8eaf51d3847f4051df6 diff --git a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r2 b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r2 index ed4351d697d1..0decb07a9267 100644 --- a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r2 +++ b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r2 @@ -12,5 +12,5 @@ RDEPEND=dev-libs/openssl:= media-libs/libpng:= !<sci-biology/ucsc-genome-browser REQUIRED_USE=server? ( mysql ) SLOT=0 SRC_URI=http://hgdownload.cse.ucsc.edu/admin/jksrc.v260.zip -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 webapp de2d3d345b44597c10d7104a7bcdf7b2 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 webapp de2d3d345b44597c10d7104a7bcdf7b2 _md5_=564b1da6740e56376a048a72b00d1f1a diff --git a/metadata/md5-cache/sci-biology/unafold-3.8-r1 b/metadata/md5-cache/sci-biology/unafold-3.8-r1 index 85597b285230..9fcf6d46d1ca 100644 --- a/metadata/md5-cache/sci-biology/unafold-3.8-r1 +++ b/metadata/md5-cache/sci-biology/unafold-3.8-r1 @@ -1,4 +1,4 @@ -BDEPEND=dev-build/autoconf-archive >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=dev-build/autoconf-archive >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure prepare DEPEND=media-libs/freeglut media-libs/gd virtual/opengl DESCRIPTION=Unified Nucleic Acid Folding and hybridization package @@ -10,5 +10,5 @@ LICENSE=unafold RDEPEND=media-libs/freeglut media-libs/gd virtual/opengl SLOT=0 SRC_URI=http://dinamelt.bioinfo.rpi.edu/download/unafold-3.8.tar.bz2 -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=14b670b7c0432a030b888744c81bd066 diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.16 b/metadata/md5-cache/sci-biology/vcftools-0.1.16 index 3c757d148cd1..c299dcdf2a49 100644 --- a/metadata/md5-cache/sci-biology/vcftools-0.1.16 +++ b/metadata/md5-cache/sci-biology/vcftools-0.1.16 @@ -1,4 +1,4 @@ -BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure prepare DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) DESCRIPTION=Tools for working with VCF (Variant Call Format) files @@ -11,5 +11,5 @@ LICENSE=LGPL-3 RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) SLOT=0 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.16/vcftools-0.1.16.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic d309b9713dfc18e754cba88d3ba69653 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 perl-functions c3fca037246e877693badea0df3b0ef8 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 flag-o-matic e503ea5acc20410237ba33ec3f7c857d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 perl-functions c3fca037246e877693badea0df3b0ef8 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=faeb202e0aded0cb660ea87d6d7be81b diff --git a/metadata/md5-cache/sci-biology/velvet-1.2.10 b/metadata/md5-cache/sci-biology/velvet-1.2.10 index 0120fe8b3e78..bbd695f8a0c9 100644 --- a/metadata/md5-cache/sci-biology/velvet-1.2.10 +++ b/metadata/md5-cache/sci-biology/velvet-1.2.10 @@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz -_eclasses_=flag-o-matic d309b9713dfc18e754cba88d3ba69653 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=flag-o-matic e503ea5acc20410237ba33ec3f7c857d multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=b0793fd684981bd3e2b3f0d2f50c4d91 diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r3 b/metadata/md5-cache/sci-biology/yass-1.14-r3 index 82c4e37bed37..bd8700fd3dd3 100644 --- a/metadata/md5-cache/sci-biology/yass-1.14-r3 +++ b/metadata/md5-cache/sci-biology/yass-1.14-r3 @@ -1,4 +1,4 @@ -BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 +BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3 DEFINED_PHASES=configure prepare DEPEND=dmalloc? ( dev-libs/dmalloc ) DESCRIPTION=Genomic similarity search with multiple transition constrained spaced seeds @@ -11,5 +11,5 @@ LICENSE=GPL-2 RDEPEND=dmalloc? ( dev-libs/dmalloc ) SLOT=0 SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz -_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 +_eclasses_=autotools d12ccbad07b44642a75ac97a3334d8e0 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 _md5_=9e0eb1b35801ce703a9a397be6421d47 |