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-rw-r--r--licenses/BL48
-rw-r--r--licenses/BlueOak-1.0.055
-rw-r--r--licenses/GPL-2-with-exceptions352
-rw-r--r--licenses/GPL-3+-with-openssl-exception16
-rw-r--r--licenses/MAJESTY-DEMO140
-rw-r--r--licenses/Manifest.gzbin106603 -> 106095 bytes
-rw-r--r--licenses/PUEL-12166
-rw-r--r--licenses/namd144
-rw-r--r--licenses/olivia8
-rw-r--r--licenses/procheck230
10 files changed, 237 insertions, 922 deletions
diff --git a/licenses/BL b/licenses/BL
deleted file mode 100644
index 606d3ef6cef0..000000000000
--- a/licenses/BL
+++ /dev/null
@@ -1,48 +0,0 @@
-Blender License 1.0 (the "BL", see http://www.blender.org/BL/ ).
-
-Copyright (C) 2002 Blender Foundation. All Rights Reserved.
-
-For teams that don't want to operate under the GPL, we're also offering
-this "non-GPL" Blender License option. This means that you can download
-the latest sources and tools via FTP or CVS from our site and sign an
-additional agreement with the Blender Foundation, so you can keep your
-source modifications confidential. Contact the Blender Foundation via
-email at license@blender.org so we can discuss how we handle the
-practical matters.
-
-A signed agreement allows you to do business with proprietary code, make
-special derived versions, sell executables, projects or services,
-provided that:
-
-1. The BL-ed code remains copyrighted by the original owners, and cannot
-be transferred to other parties
-
-2. The BL-ed code cannot be published or re-distributed in any way, and
-only be available for the internal staff that works directly on the
-software itself. Employees of partners with which you co-develop on the
-projects that include BL-ed code are considered 'internal staff' also.
-
-3. The BL-ed code can be used (sold, distributed) in parts or in its
-whole only as an executable or as a compiled library/module and its
-header files.
-
-4. The usage of the name Blender or the Blender logo is not included in
-this license. Instead 'including Blender Foundation release X' (or
-similar) can be used, with 'X' the version number of the initial Blender
-Foundation release which you started with.
-
-5. Note that this BL has no authority over some of the external
-libraries licenses which Blender links with.
-
-Additionally you get :
-
-1. The right to use Blender Foundation source updates for a 1 year
-period.
-
-2. Support. Details to be determined by the additional agreement.
-
-You are invited to donate your proprietary changes back to the open
-source community after a reasonable time period. You are of course free
-to choose not to do this.
-
-End of BL terms and conditions.
diff --git a/licenses/BlueOak-1.0.0 b/licenses/BlueOak-1.0.0
new file mode 100644
index 000000000000..c5402b9577a8
--- /dev/null
+++ b/licenses/BlueOak-1.0.0
@@ -0,0 +1,55 @@
+# Blue Oak Model License
+
+Version 1.0.0
+
+## Purpose
+
+This license gives everyone as much permission to work with
+this software as possible, while protecting contributors
+from liability.
+
+## Acceptance
+
+In order to receive this license, you must agree to its
+rules. The rules of this license are both obligations
+under that agreement and conditions to your license.
+You must not do anything with this software that triggers
+a rule that you cannot or will not follow.
+
+## Copyright
+
+Each contributor licenses you to do everything with this
+software that would otherwise infringe that contributor's
+copyright in it.
+
+## Notices
+
+You must ensure that everyone who gets a copy of
+any part of this software from you, with or without
+changes, also gets the text of this license or a link to
+<https://blueoakcouncil.org/license/1.0.0>.
+
+## Excuse
+
+If anyone notifies you in writing that you have not
+complied with [Notices](#notices), you can keep your
+license by taking all practical steps to comply within 30
+days after the notice. If you do not do so, your license
+ends immediately.
+
+## Patent
+
+Each contributor licenses you to do everything with this
+software that would otherwise infringe any patent claims
+they can license or become able to license.
+
+## Reliability
+
+No contributor can revoke this license.
+
+## No Liability
+
+***As far as the law allows, this software comes as is,
+without any warranty or condition, and no contributor
+will be liable to anyone for any damages related to this
+software or this license, under any kind of legal claim.***
diff --git a/licenses/GPL-2-with-exceptions b/licenses/GPL-2-with-exceptions
deleted file mode 100644
index 7083773f9f66..000000000000
--- a/licenses/GPL-2-with-exceptions
+++ /dev/null
@@ -1,352 +0,0 @@
-NOTE: This is the GPL with specific exceptions added by packages to extend your rights under the GPL. The specific exception(s) for the package can be found in the source tarball.
-
-Exceptions follow,
-
-// As a special exception, if other files instantiate templates or use macros
-// or inline functions from this file, or you compile this file and link it
-// with other works to produce a work based on this file, this file does not
-// by itself cause the resulting work to be covered by the GNU General Public
-// License. This exception does not invalidate any other reasons why a work
-// based on this file might be covered by the GNU General Public License.
-
-End of exceptions. The rest of this file is the GPL.
-
- GNU GENERAL PUBLIC LICENSE
- Version 2, June 1991
-
- Copyright (C) 1989, 1991 Free Software Foundation, Inc.,
- 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
- Everyone is permitted to copy and distribute verbatim copies
- of this license document, but changing it is not allowed.
-
- Preamble
-
- The licenses for most software are designed to take away your
-freedom to share and change it. By contrast, the GNU General Public
-License is intended to guarantee your freedom to share and change free
-software--to make sure the software is free for all its users. This
-General Public License applies to most of the Free Software
-Foundation's software and to any other program whose authors commit to
-using it. (Some other Free Software Foundation software is covered by
-the GNU Lesser General Public License instead.) You can apply it to
-your programs, too.
-
- When we speak of free software, we are referring to freedom, not
-price. Our General Public Licenses are designed to make sure that you
-have the freedom to distribute copies of free software (and charge for
-this service if you wish), that you receive source code or can get it
-if you want it, that you can change the software or use pieces of it
-in new free programs; and that you know you can do these things.
-
- To protect your rights, we need to make restrictions that forbid
-anyone to deny you these rights or to ask you to surrender the rights.
-These restrictions translate to certain responsibilities for you if you
-distribute copies of the software, or if you modify it.
-
- For example, if you distribute copies of such a program, whether
-gratis or for a fee, you must give the recipients all the rights that
-you have. You must make sure that they, too, receive or can get the
-source code. And you must show them these terms so they know their
-rights.
-
- We protect your rights with two steps: (1) copyright the software, and
-(2) offer you this license which gives you legal permission to copy,
-distribute and/or modify the software.
-
- Also, for each author's protection and ours, we want to make certain
-that everyone understands that there is no warranty for this free
-software. If the software is modified by someone else and passed on, we
-want its recipients to know that what they have is not the original, so
-that any problems introduced by others will not reflect on the original
-authors' reputations.
-
- Finally, any free program is threatened constantly by software
-patents. We wish to avoid the danger that redistributors of a free
-program will individually obtain patent licenses, in effect making the
-program proprietary. To prevent this, we have made it clear that any
-patent must be licensed for everyone's free use or not licensed at all.
-
- The precise terms and conditions for copying, distribution and
-modification follow.
-
- GNU GENERAL PUBLIC LICENSE
- TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
-
- 0. This License applies to any program or other work which contains
-a notice placed by the copyright holder saying it may be distributed
-under the terms of this General Public License. The "Program", below,
-refers to any such program or work, and a "work based on the Program"
-means either the Program or any derivative work under copyright law:
-that is to say, a work containing the Program or a portion of it,
-either verbatim or with modifications and/or translated into another
-language. (Hereinafter, translation is included without limitation in
-the term "modification".) Each licensee is addressed as "you".
-
-Activities other than copying, distribution and modification are not
-covered by this License; they are outside its scope. The act of
-running the Program is not restricted, and the output from the Program
-is covered only if its contents constitute a work based on the
-Program (independent of having been made by running the Program).
-Whether that is true depends on what the Program does.
-
- 1. You may copy and distribute verbatim copies of the Program's
-source code as you receive it, in any medium, provided that you
-conspicuously and appropriately publish on each copy an appropriate
-copyright notice and disclaimer of warranty; keep intact all the
-notices that refer to this License and to the absence of any warranty;
-and give any other recipients of the Program a copy of this License
-along with the Program.
-
-You may charge a fee for the physical act of transferring a copy, and
-you may at your option offer warranty protection in exchange for a fee.
-
- 2. You may modify your copy or copies of the Program or any portion
-of it, thus forming a work based on the Program, and copy and
-distribute such modifications or work under the terms of Section 1
-above, provided that you also meet all of these conditions:
-
- a) You must cause the modified files to carry prominent notices
- stating that you changed the files and the date of any change.
-
- b) You must cause any work that you distribute or publish, that in
- whole or in part contains or is derived from the Program or any
- part thereof, to be licensed as a whole at no charge to all third
- parties under the terms of this License.
-
- c) If the modified program normally reads commands interactively
- when run, you must cause it, when started running for such
- interactive use in the most ordinary way, to print or display an
- announcement including an appropriate copyright notice and a
- notice that there is no warranty (or else, saying that you provide
- a warranty) and that users may redistribute the program under
- these conditions, and telling the user how to view a copy of this
- License. (Exception: if the Program itself is interactive but
- does not normally print such an announcement, your work based on
- the Program is not required to print an announcement.)
-
-These requirements apply to the modified work as a whole. If
-identifiable sections of that work are not derived from the Program,
-and can be reasonably considered independent and separate works in
-themselves, then this License, and its terms, do not apply to those
-sections when you distribute them as separate works. But when you
-distribute the same sections as part of a whole which is a work based
-on the Program, the distribution of the whole must be on the terms of
-this License, whose permissions for other licensees extend to the
-entire whole, and thus to each and every part regardless of who wrote it.
-
-Thus, it is not the intent of this section to claim rights or contest
-your rights to work written entirely by you; rather, the intent is to
-exercise the right to control the distribution of derivative or
-collective works based on the Program.
-
-In addition, mere aggregation of another work not based on the Program
-with the Program (or with a work based on the Program) on a volume of
-a storage or distribution medium does not bring the other work under
-the scope of this License.
-
- 3. You may copy and distribute the Program (or a work based on it,
-under Section 2) in object code or executable form under the terms of
-Sections 1 and 2 above provided that you also do one of the following:
-
- a) Accompany it with the complete corresponding machine-readable
- source code, which must be distributed under the terms of Sections
- 1 and 2 above on a medium customarily used for software interchange; or,
-
- b) Accompany it with a written offer, valid for at least three
- years, to give any third party, for a charge no more than your
- cost of physically performing source distribution, a complete
- machine-readable copy of the corresponding source code, to be
- distributed under the terms of Sections 1 and 2 above on a medium
- customarily used for software interchange; or,
-
- c) Accompany it with the information you received as to the offer
- to distribute corresponding source code. (This alternative is
- allowed only for noncommercial distribution and only if you
- received the program in object code or executable form with such
- an offer, in accord with Subsection b above.)
-
-The source code for a work means the preferred form of the work for
-making modifications to it. For an executable work, complete source
-code means all the source code for all modules it contains, plus any
-associated interface definition files, plus the scripts used to
-control compilation and installation of the executable. However, as a
-special exception, the source code distributed need not include
-anything that is normally distributed (in either source or binary
-form) with the major components (compiler, kernel, and so on) of the
-operating system on which the executable runs, unless that component
-itself accompanies the executable.
-
-If distribution of executable or object code is made by offering
-access to copy from a designated place, then offering equivalent
-access to copy the source code from the same place counts as
-distribution of the source code, even though third parties are not
-compelled to copy the source along with the object code.
-
- 4. You may not copy, modify, sublicense, or distribute the Program
-except as expressly provided under this License. Any attempt
-otherwise to copy, modify, sublicense or distribute the Program is
-void, and will automatically terminate your rights under this License.
-However, parties who have received copies, or rights, from you under
-this License will not have their licenses terminated so long as such
-parties remain in full compliance.
-
- 5. You are not required to accept this License, since you have not
-signed it. However, nothing else grants you permission to modify or
-distribute the Program or its derivative works. These actions are
-prohibited by law if you do not accept this License. Therefore, by
-modifying or distributing the Program (or any work based on the
-Program), you indicate your acceptance of this License to do so, and
-all its terms and conditions for copying, distributing or modifying
-the Program or works based on it.
-
- 6. Each time you redistribute the Program (or any work based on the
-Program), the recipient automatically receives a license from the
-original licensor to copy, distribute or modify the Program subject to
-these terms and conditions. You may not impose any further
-restrictions on the recipients' exercise of the rights granted herein.
-You are not responsible for enforcing compliance by third parties to
-this License.
-
- 7. If, as a consequence of a court judgment or allegation of patent
-infringement or for any other reason (not limited to patent issues),
-conditions are imposed on you (whether by court order, agreement or
-otherwise) that contradict the conditions of this License, they do not
-excuse you from the conditions of this License. If you cannot
-distribute so as to satisfy simultaneously your obligations under this
-License and any other pertinent obligations, then as a consequence you
-may not distribute the Program at all. For example, if a patent
-license would not permit royalty-free redistribution of the Program by
-all those who receive copies directly or indirectly through you, then
-the only way you could satisfy both it and this License would be to
-refrain entirely from distribution of the Program.
-
-If any portion of this section is held invalid or unenforceable under
-any particular circumstance, the balance of the section is intended to
-apply and the section as a whole is intended to apply in other
-circumstances.
-
-It is not the purpose of this section to induce you to infringe any
-patents or other property right claims or to contest validity of any
-such claims; this section has the sole purpose of protecting the
-integrity of the free software distribution system, which is
-implemented by public license practices. Many people have made
-generous contributions to the wide range of software distributed
-through that system in reliance on consistent application of that
-system; it is up to the author/donor to decide if he or she is willing
-to distribute software through any other system and a licensee cannot
-impose that choice.
-
-This section is intended to make thoroughly clear what is believed to
-be a consequence of the rest of this License.
-
- 8. If the distribution and/or use of the Program is restricted in
-certain countries either by patents or by copyrighted interfaces, the
-original copyright holder who places the Program under this License
-may add an explicit geographical distribution limitation excluding
-those countries, so that distribution is permitted only in or among
-countries not thus excluded. In such case, this License incorporates
-the limitation as if written in the body of this License.
-
- 9. The Free Software Foundation may publish revised and/or new versions
-of the General Public License from time to time. Such new versions will
-be similar in spirit to the present version, but may differ in detail to
-address new problems or concerns.
-
-Each version is given a distinguishing version number. If the Program
-specifies a version number of this License which applies to it and "any
-later version", you have the option of following the terms and conditions
-either of that version or of any later version published by the Free
-Software Foundation. If the Program does not specify a version number of
-this License, you may choose any version ever published by the Free Software
-Foundation.
-
- 10. If you wish to incorporate parts of the Program into other free
-programs whose distribution conditions are different, write to the author
-to ask for permission. For software which is copyrighted by the Free
-Software Foundation, write to the Free Software Foundation; we sometimes
-make exceptions for this. Our decision will be guided by the two goals
-of preserving the free status of all derivatives of our free software and
-of promoting the sharing and reuse of software generally.
-
- NO WARRANTY
-
- 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
-FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN
-OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
-PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
-OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS
-TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE
-PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
-REPAIR OR CORRECTION.
-
- 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
-WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
-REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
-INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
-OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
-TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
-YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
-PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
-POSSIBILITY OF SUCH DAMAGES.
-
- END OF TERMS AND CONDITIONS
-
- How to Apply These Terms to Your New Programs
-
- If you develop a new program, and you want it to be of the greatest
-possible use to the public, the best way to achieve this is to make it
-free software which everyone can redistribute and change under these terms.
-
- To do so, attach the following notices to the program. It is safest
-to attach them to the start of each source file to most effectively
-convey the exclusion of warranty; and each file should have at least
-the "copyright" line and a pointer to where the full notice is found.
-
- <one line to give the program's name and a brief idea of what it does.>
- Copyright (C) <year> <name of author>
-
- This program is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License along
- with this program; if not, write to the Free Software Foundation, Inc.,
- 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-Also add information on how to contact you by electronic and paper mail.
-
-If the program is interactive, make it output a short notice like this
-when it starts in an interactive mode:
-
- Gnomovision version 69, Copyright (C) year name of author
- Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
- This is free software, and you are welcome to redistribute it
- under certain conditions; type `show c' for details.
-
-The hypothetical commands `show w' and `show c' should show the appropriate
-parts of the General Public License. Of course, the commands you use may
-be called something other than `show w' and `show c'; they could even be
-mouse-clicks or menu items--whatever suits your program.
-
-You should also get your employer (if you work as a programmer) or your
-school, if any, to sign a "copyright disclaimer" for the program, if
-necessary. Here is a sample; alter the names:
-
- Yoyodyne, Inc., hereby disclaims all copyright interest in the program
- `Gnomovision' (which makes passes at compilers) written by James Hacker.
-
- <signature of Ty Coon>, 1 April 1989
- Ty Coon, President of Vice
-
-This General Public License does not permit incorporating your program into
-proprietary programs. If your program is a subroutine library, you may
-consider it more useful to permit linking proprietary applications with the
-library. If this is what you want to do, use the GNU Lesser General
-Public License instead of this License.
diff --git a/licenses/GPL-3+-with-openssl-exception b/licenses/GPL-3+-with-openssl-exception
new file mode 100644
index 000000000000..62dee742f9c5
--- /dev/null
+++ b/licenses/GPL-3+-with-openssl-exception
@@ -0,0 +1,16 @@
+GNU General Public License, version 3 or any later version.
+See GPL-3 for the full text of this license.
+
+
+ Exception
+
+ In addition, as a special exception, the copyright holders give permission
+to link the code of portions of this program with the OpenSSL library under
+certain conditions as described in each individual source file, and distribute
+linked combinations including the two.
+You must obey the GNU General Public License in all respects for all of the
+code used other than OpenSSL. If you modify file(s) with this exception, you
+may extend this exception to your version of the file(s), but you are not
+obligated to do so. If you do not wish to do so, delete this exception
+statement from your version. If you delete this exception statement from all
+source files in the program, then also delete it here.
diff --git a/licenses/MAJESTY-DEMO b/licenses/MAJESTY-DEMO
deleted file mode 100644
index 7f82374fb991..000000000000
--- a/licenses/MAJESTY-DEMO
+++ /dev/null
@@ -1,140 +0,0 @@
-End User License Agreement
-YOU SHOULD CAREFULLY READ THE FOLLOWING END USER LICENSE AGREEMENT
-BEFORE INSTALLING THIS SOFTWARE PROGRAM. BY INSTALLING OR OTHERWISE
-USING THE SOFTWARE PROGRAM, YOU AGREE TO BE BOUND BY THE TERMS OF THIS
-AGREEMENT.
-
-This software program (the "Program"), any printed materials, any
-on-line or electronic documentation (the "Manuals"), and any and all
-copies and derivative works of such software program are the
-copyrighted work of Linux Game Publishing LTD and its licensors. All
-rights reserved, except as expressly stated herein. All use of the
-Program is governed by the terms of this End User License Agreement
-("License Agreement"). The Program is solely for use by end users
-according to the terms of the Licence Agreement. Any use, reproduction
-or redistribution of the Program not in accordance with the terms of
-the Licence Agreement is expressly prohibited.
-
-1. Limited Use License. Linux Game Publishing ("LGP") hereby grants,
-and by installing the Program you thereby accept, a limited,
-non-exclusive license and right to install and use one (1) copy of the
-Program for your use on either a home, business, or portable
-computer. The Program is licensed not sold. Your license confers no
-title or ownership in the Program.
-
-2. Ownership. All title, ownership rights and intellectual property
-rights in and to the Program and any and all copies thereof (including
-but not limited to any titles, computer code, themes, objects,
-characters, character names, stories, dialog, catch phrases,
-locations, concepts, artwork, animations, sounds, musical
-compositions, audio-visual effects, methods of operation, moral
-rights, and any related documentation, and "applets" incorporated into
-the Program) are owned by LGP and its licensors. The Program is
-protected by the copyright laws of the United Kingdom, international
-copyright treaties and conventions and other laws. All rights are
-reserved. The Program contains certain licensed materials and LGP's
-licensors may protect their rights in the event of any violation of
-this Agreement.
-
-3. Responsibilities of End User.
-A. Subject to the Grant of License hereinabove, you may not, in whole
-or in part, copy, photocopy, reproduce, translate, reverse engineer,
-derive source code, modify, disassemble, decompile, create derivative
-works based on the Program, or remove any proprietary notices or
-labels on the Program without the prior written consent of LGP.
-B. The Program is licensed to you as a single product. Its component
-parts may not be separated for use on more than one computer.
-C. You are entitled to use the Program for your own use, but you are
-not entitled to: (i) sell, grant a security interest in or transfer
-reproductions of the Program to other parties in any way, nor to rent,
-lease or license the Program to others without the prior written
-consent of LGP; or (ii) exploit the Program or any of its parts for
-any commercial purpose including, but not limited to, use at a cyber
-cafe, computer gaming center or any other location-based site. LGP may
-offer a separate Site License Agreement to permit you to make the
-Program available for commercial use. Contact LGP for details.
-
-4. Program Transfer. You may transfer all of your rights
-under this License Agreement, provided the recipient agrees to the
-terms of this License Agreement.
-
-5. Termination. The License Agreement is effective until
-terminated. You may terminate the License Agreement at any time by
-destroying the Program. LGP may, at its discretion, terminate this
-License Agreement in the event that you fail to comply with the terms
-and conditions contained herein. In such event, you must immediately
-destroy the Program.
-
-6. Export Controls. The program may not be re-exported, downloaded,
-otherwise exported into (or to a national or resident of) any country
-to whom it would be illegal to export the Program under UK law.
-
-7. Limited Warranty. Except as expressly and unambiguously set forth
-in this paragraph 7, LGP and its licensors disclaim any warranty for
-the Program, Editor and Manual(s). The Program, Editor and Manual(s)
-are provided "as is" without any warranty of any kind, either express
-or implied, including, without limitation, the implied warranties of
-merchantability, fitness for a particular purpose, or
-noninfringement. The entire risk arising out of use or performance of
-the Program, Editor, and Manual(s) remains with the User, however LGP
-warrants up to and including 90 days from the date of your purchase of
-the Program that the media containing the Program shall be free from
-defects in material and workmanship. In the event that the media
-proves to be defective during that time period, and upon presentation
-to LGP of proof of purchase of the defective Program, LGP will at its
-option: (i) correct any defect; (ii) provide a replacement copy of the
-same product; or (iii) refund your money.
-
-8. Limitation of Liability. NEITHER LGP, ITS LICENSORS NOR ANY PARENT,
-SUBSIDIARY OR AFFILIATE OF THE FOREGOING SHALL BE LIABLE IN ANY WAY
-FOR LOSS OR DAMAGE OF ANY KIND RESULTING FROM THE USE OF THE PROGRAM,
-EDITOR, AND MANUAL(S) INCLUDING, WITHOUT LIMITATION, LOSS OF GOODWILL,
-WORK STOPPAGE, COMPUTER FAILURE OR MALFUNCTION, OR ANY AND ALL OTHER
-COMMERCIAL DAMAGES OR LOSSES.
-
-9. Equitable Remedies. You hereby agree that LGP would be irreparably
-damaged if the terms of this License Agreement were not specifically
-enforced, and therefore you agree that LGP shall be entitled, without
-bond, other security, or proof of damages, to appropriate equitable
-remedies with respect to breaches of this License Agreement, in
-addition to such other remedies as LGP may otherwise have available to
-it under applicable laws. In the event that any litigation is brought
-by either party in connection with this License Agreement, the
-prevailing party in such litigation shall be entitled to recover from
-the other party all the costs, attorney's fees and other expenses
-incurred by such prevailing party in the litigation.
-
-10. Limitations on License. Nothing in this License Agreement shall
-preclude you from making or authorizing the making of copies of
-the Program provided, however, that all copies are complete and exact
-copies of the original, including this license.
-
-11. Miscellaneous. This License Agreement shall be deemed to have been
-made and executed in the United Kingdom and any dispute arising
-hereunder shall be resolved in accordance with the laws of the UK. You
-agree that any claim asserted in any legal proceeding by one of the
-parties against the other shall be commenced and maintained in the
-appropriate court located in Nottingham, England, having subject
-matter jurisdiction with respect to the dispute between the
-parties. This License Agreement may be amended, altered or modified
-only by an instrument in writing, specifying such amendment,
-alteration or modification, executed by both parties. In the event
-that any provision of this License Agreement shall be held by a court
-or other tribunal of competent jurisdiction shall be unenforceable,
-such provision will be enforced to the maximum extent permissible and
-the remaining portions of this License Agreement shall remain in full
-force and effect. This License Agreement constituted and contains the
-entire agreement between the parties with respect to the subject
-matter hereof and supersedes any prior oral or written agreements. You
-hereby acknowledge that you have read and understand the forgoing
-License Agreement and agree that the action of installing the Program
-is an express acknowledgment of your agreement to be bound by the
-terms and conditions of this License Agreement. You also acknowledge
-and agree that this License Agreement is the complete and exclusive
-statement of the agreement between you and LGP and that this License
-Agreement supersedes any prior or contemporaneous agreement, either
-oral or written, and any other communications between you and LGP.
-
-Linux Game Publishing LTD
-17 Rossington Road
-Nottingham, NG2 4HX, England
diff --git a/licenses/Manifest.gz b/licenses/Manifest.gz
index ba900f513bb2..bc33f88aa7e5 100644
--- a/licenses/Manifest.gz
+++ b/licenses/Manifest.gz
Binary files differ
diff --git a/licenses/PUEL-12 b/licenses/PUEL-12
new file mode 100644
index 000000000000..eb4d751bd3f1
--- /dev/null
+++ b/licenses/PUEL-12
@@ -0,0 +1,166 @@
+VirtualBox Extension Pack Personal Use and Educational License (PUEL)
+
+License version 12, 22 July 2024
+
+PLEASE READ THE FOLLOWING ORACLE VIRTUALBOX EXTENSION PACK PERSONAL USE
+AND EDUCATIONAL LICENSE CAREFULLY BEFORE DOWNLOADING OR USING THE ORACLE
+SOFTWARE. THESE TERMS AND CONDITIONS CONSTITUTE A LEGAL AGREEMENT BETWEEN
+YOU AND ORACLE.
+
+ORACLE AMERICA, INC. ("ORACLE") IS WILLING TO LICENSE THE PRODUCT DEFINED
+IN SECTION 1 BELOW ONLY ON THE CONDITION THAT YOU ACCEPT ALL OF THE TERMS
+CONTAINED IN THIS VIRTUALBOX EXTENSION PACK PERSONAL USE AND EDUCATIONAL
+LICENSE AGREEMENT ("AGREEMENT").
+
+IF YOU ARE AGREEING TO THIS LICENSE ON BEHALF OF AN ENTITY (RATHER THAN
+AS AN INDIVIDUAL HUMAN BEING), YOU REPRESENT THAT YOU HAVE THE APPROPRIATE
+AUTHORITY TO ACCEPT THESE TERMS AND CONDITIONS ON BEHALF OF SUCH ENTITY.
+
+1 SUBJECT OF AGREEMENT. This Agreement governs your use of the binary
+software package called "Oracle VirtualBox Extension Pack" (the
+"Product"), which contains a set of additional features for "Oracle
+VirtualBox" that enhance the operation of multiple virtual machines
+("Guest Computers") on a single physical computer ("Host Computer"). The
+Product consists of executable files in machine code, script files, data
+files, and all documentation and updates provided to You by Oracle.
+
+2 GRANT OF LICENSE. Oracle grants you a personal, non-exclusive,
+non-transferable, limited license without fees to reproduce, install,
+execute, and use internally the Product on Host Computers for your
+Personal Use, or Educational Use. "Personal Use" is noncommercial use
+solely by the person downloading the Product from Oracle on a single Host
+Computer, provided that no more than one client or remote computer is
+connected to that Host Computer and that client or remote computer is used
+solely to remotely view the Guest Computer(s). "Educational Use" is any
+use by teachers or students in an academic institution (schools, colleges
+and universities) as part of the institution's educational curriculum.
+Personal Use and/or Educational Use expressly exclude any use of the
+Product for commercial purposes or to operate, run, or act on behalf of or
+for the benefit of a business, organization, governmental organization, or
+educational institution.
+
+Oracle reserves all rights not expressly granted in this license.
+
+3 RESTRICTIONS AND RESERVATION OF RIGHTS.
+
+(1) The Product and copies thereof provided to you under this Agreement
+are copyrighted and licensed, not sold, to you by Oracle.
+
+(2) You may not do any of the following: (a) modify any part of the
+Product, except to the extent allowed in the documentation accompanying
+the Product; (b) rent, lease, lend, re-distribute, or encumber the
+Product; (c) remove or alter any proprietary legends or notices contained
+in the Product; or (d) decompile, or reverse engineer the Product
+(except to the extent permitted by applicable law).
+
+(3) The Product is not designed, licensed or intended for use in the
+design, construction, operation or maintenance of any nuclear facility
+and Oracle and its licensors disclaim any express or implied warranty
+of fitness for such uses.
+
+(4) No right, title or interest in or to any trademark, service mark, logo
+or trade name of Oracle or its licensors is granted under this Agreement.
+
+4 TERMINATION. The Agreement is effective on the date you receive the
+Product and remains effective until terminated. Your rights under this
+Agreement will terminate immediately without notice from Oracle if
+you materially breach it or take any action in derogation of Oracle's
+and/or its licensors' rights to the Product. Oracle may terminate this
+Agreement immediately should any part of the Product become or in Oracle's
+reasonable opinion likely to become the subject of a claim of intellectual
+property infringement or trade secret misappropriation. Upon termination,
+you will cease use of and destroy all copies of the Product under your
+control and confirm compliance in writing to Oracle. Neither termination
+of this Agreement nor any deletion or removal of the Product shall limit
+any obligations you may have to Oracle, or any rights and/or remedies that
+Oracle may have with respect to any past or future infringing use of the
+Product (including but not limited to any use of the Product outside the
+scope of the license provided in the Agreement). Sections 3-9, inclusive,
+will survive termination of the Agreement.
+
+5 DISCLAIMER OF WARRANTY. TO THE EXTENT NOT PROHIBITED BY APPLICABLE LAW,
+ORACLE PROVIDES THE PRODUCT "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER
+EXPRESS OR IMPLIED. WITHOUT LIMITING THE FOREGOING, ORACLE SPECIFICALLY
+DISCLAIMS ANY IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A
+PARTICULAR PURPOSE, TITLE, AND NON-INFRINGEMENT. The entire risk as
+to the quality and performance of the Product is with you. Should it
+prove defective, you assume the cost of all necessary servicing, repair,
+or correction.
+
+6 LIMITATION OF LIABILITY. TO THE EXTENT NOT PROHIBITED BY APPLICABLE LAW,
+IN NO EVENT WILL ORACLE OR ITS LICENSORS BE LIABLE FOR ANY LOST REVENUE,
+PROFIT, DATA, OR DATA USE, OR FOR SPECIAL, INDIRECT, CONSEQUENTIAL,
+INCIDENTAL OR PUNITIVE DAMAGES, HOWEVER CAUSED REGARDLESS OF THE THEORY
+OF LIABILITY, ARISING OUT OF OR RELATED TO THE USE OF OR INABILITY TO
+USE THE PRODUCT, EVEN IF ORACLE HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES. In no event will Oracle's liability to you, whether in
+contract, tort (including negligence), or otherwise, exceed the amount
+paid by you for the Product under this Agreement.
+
+7 SEPARATELY LICENSED THIRD PARTY TECHNOLOGY. The Product may contain
+or require the use of third party technology that is provided with
+the Product. Oracle may provide certain notices to you in the Product's
+documentation, readmes or notice files in connection with such third party
+technology. Third party technology will be licensed to you either under
+the terms of this Agreement or, if specified in the documentation, readmes
+or notice files, under Separate Terms. Your rights to use Separately
+Licensed Third Party Technology under Separate Terms are not restricted
+in any way by this Agreement. However, for clarity, notwithstanding the
+existence of a notice, third party technology that is not Separately
+Licensed Third Party Technology shall be deemed part of the Product and
+is licensed to You under the terms of this Agreement. "Separate Terms"
+refers to separate license terms that are specified in the Product's
+documentation, readmes or notice files and that apply to Separately
+Licensed Third Party Technology. "Separately Licensed Third Party
+Technology" refers to third party technology that is licensed under
+Separate Terms and not under the terms of this Agreement.
+
+8 EXPORT. Export laws and regulations of the United States and any other
+relevant local export laws and regulations apply to the Product. You
+agree that such export laws govern your use of the Product (including
+technical data) provided under this Agreement, and you agree to comply
+with all such export laws and regulations (including "deemed export" and
+"deemed re-export" regulations). You agree that no data, information,
+and/or Product (or direct product thereof) will be exported, directly or
+indirectly, in violation of these laws, or will be used for any purpose
+prohibited by these laws including, without limitation, nuclear, chemical,
+or biological weapons proliferation, or development of missile technology.
+
+9 U.S. GOVERNMENT END USERS. Oracle programs, including the Product,
+any operating system, integrated software, any programs installed on
+hardware, and/or documentation, delivered to U.S. Government end users
+are "commercial computer software" pursuant to the applicable Federal
+Acquisition Regulation and agency-specific supplemental regulations. As
+such, use, duplication, disclosure, modification, and adaptation of
+the programs, including any operating system, integrated software,
+any programs installed on the hardware, and/or documentation, shall
+be subject to license terms and license restrictions applicable to the
+programs. No other rights are granted to the U.S. Government.
+
+10 MISCELLANEOUS. This Agreement is the entire agreement between you
+and Oracle relating to its subject matter. It supersedes all prior or
+contemporaneous oral or written communications, proposals, representations
+and warranties and prevails over any conflicting or additional terms
+of any quote, order, acknowledgment, or other communication between
+the parties relating to its subject matter during the term of this
+Agreement. No modification of this Agreement will be binding, unless in
+writing and signed by an authorized representative of each party. If any
+provision of this Agreement is held to be unenforceable, this Agreement
+will remain in effect with the provision omitted, unless omission would
+frustrate the intent of the parties, in which case this Agreement will
+immediately terminate. This Agreement is governed by the laws of the
+State of California, USA, and you and Oracle agree to submit to the
+exclusive jurisdiction of, and venue in, the courts of San Francisco
+or Santa Clara counties in California in any dispute arising out of or
+relating to this Agreement. Upon 45 days written notice, Oracle may
+audit your use of the Product to confirm that you are in compliance
+with the terms of this Agreement. You agree to cooperate with Oracle's
+audit and provide reasonable assistance and access to information. Any
+such audit shall not unreasonably interfere with your normal business
+operations. You agree to pay within 30 days of written notification
+any fees applicable to your unlicensed use of the Product. You agree
+that Oracle shall not be responsible for any of your costs incurred in
+cooperating with the audit. If a legal action or proceeding is commenced
+by either party in connection with the enforcement of this Agreement,
+the prevailing party shall be entitled to its costs and attorneys'
+fees actually incurred in connection with such action or proceeding.
diff --git a/licenses/namd b/licenses/namd
deleted file mode 100644
index c1e9d54aa869..000000000000
--- a/licenses/namd
+++ /dev/null
@@ -1,144 +0,0 @@
-+--------------------------------------------------------------------+
-| |
-| University of Illinois |
-| NAMD Molecular Dynamics Software |
-| Non-Exclusive, Non-Commercial Use License |
-| |
-+--------------------------------------------------------------------+
-
-Upon execution of this Agreement by the party identified below ("Licensee"),
-The Board of Trustees of the University of Illinois ("Illinois"), on behalf
-of The Theoretical and Computational Biophysics Group ("TCBG") in the Beckman
-Institute, will provide the NAMD molecular dynamics software ("NAMD") in
-Executable Code and/or Source Code form ("Software") to Licensee, subject to
-the following terms and conditions. For purposes of this Agreement,
-Executable Code is the compiled code, which is ready to run on Licensee's
-computer. Source code consists of a set of files which contain the actual
-program commands that are compiled to form the Executable Code.
-
-1. The Software is intellectual property owned by Illinois, and all right,
-title and interest, including copyright, remain with Illinois. Illinois
-grants, and Licensee hereby accepts, a restricted, non-exclusive,
-non-transferable license to use the Software for academic, research and
-internal business purposes only, e.g. not for commercial use (see Clause 7
-below), without a fee.
-
-2. Licensee may, at its own expense, create and freely distribute
-complimentary works that interoperate with the Software, directing others to
-the TCBG server to license and obtain the Software itself. Licensee may, at
-its own expense, modify the Software to make derivative works. Except as
-explicitly provided below, this License shall apply to any derivative work
-as it does to the original Software distributed by Illinois. Any derivative
-work should be clearly marked and renamed to notify users that it is a
-modified version and not the original Software distributed by Illinois.
-Licensee agrees to reproduce the copyright notice and other proprietary
-markings on any derivative work and to include in the documentation of such
-work the acknowledgement:
-
-"This software includes code developed by the Theoretical and Computational
- Biophysics Group in the Beckman Institute for Advanced Science and
- Technology at the University of Illinois at Urbana-Champaign."
-
-Licensee may redistribute without restriction works with up to 1/2 of their
-non-comment source code derived from at most 1/10 of the non-comment source
-code developed by Illinois and contained in the Software, provided that the
-above directions for notice and acknowledgement are observed. Any other
-distribution of the Software or any derivative work requires a separate
-license with Illinois. Licensee may contact Illinois (namd@ks.uiuc.edu) to
-negotiate an appropriate license for such distribution.
-
-3. Except as expressly set forth in this Agreement, THIS SOFTWARE IS PROVIDED
-"AS IS" AND ILLINOIS MAKES NO REPRESENTATIONS AND EXTENDS NO WARRANTIES OF
-ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES
-OR MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE, OR THAT THE USE OF
-THE SOFTWARE WILL NOT INFRINGE ANY PATENT, TRADEMARK, OR OTHER RIGHTS.
-LICENSEE ASSUMES THE ENTIRE RISK AS TO THE RESULTS AND PERFORMANCE OF THE
-SOFTWARE AND/OR ASSOCIATED MATERIALS. LICENSEE AGREES THAT UNIVERSITY SHALL
-NOT BE HELD LIABLE FOR ANY DIRECT, INDIRECT, CONSEQUENTIAL, OR INCIDENTAL
-DAMAGES WITH RESPECT TO ANY CLAIM BY LICENSEE OR ANY THIRD PARTY ON ACCOUNT
-OF OR ARISING FROM THIS AGREEMENT OR USE OF THE SOFTWARE AND/OR ASSOCIATED
-MATERIALS.
-
-4. Licensee understands the Software is proprietary to Illinois. Licensee
-agrees to take all reasonable steps to insure that the Software is
-protected and secured from unauthorized disclosure, use, or release and
-will treat it with at least the same level of care as Licensee would use to
-protect and secure its own proprietary computer programs and/or information,
-but using no less than a reasonable standard of care. Licensee agrees to
-provide the Software only to any other person or entity who has registered
-with Illinois. If licensee is not registering as an individual but as an
-institution or corporation each member of the institution or corporation
-who has access to or uses Software must agree to and abide by the terms
-of this license. If Licensee becomes aware of any unauthorized licensing,
-copying or use of the Software, Licensee shall promptly notify Illinois
-in writing. Licensee expressly agrees to use the Software only in the
-manner and for the specific uses authorized in this Agreement.
-
-5. By using or copying this Software, Licensee agrees to abide by the
-copyright law and all other applicable laws of the U.S. including, but not
-limited to, export control laws and the terms of this license. Illinois
-shall have the right to terminate this license immediately by written
-notice upon Licensee's breach of, or non-compliance with, any
-terms of the license. Licensee may be held legally responsible for any
-copyright infringement that is caused or encouraged by its failure to
-abide by the terms of this license. Upon termination, Licensee agrees to
-destroy all copies of the Software in its possession and to verify such
-destruction in writing.
-
-6. The user agrees that any reports or published results obtained with
-the Software will acknowledge its use by the appropriate citation as
-follows:
-
-"NAMD was developed by the Theoretical and Computational Biophysics Group in
- the Beckman Institute for Advanced Science and Technology at the University
- of Illinois at Urbana-Champaign."
-
-Any published work which utilizes NAMD shall include the following reference:
-
-"Laxmikant Kale, Robert Skeel, Milind Bhandarkar, Robert Brunner,
- Attila Gursoy, Neal Krawetz, James Phillips, Aritomo Shinozaki,
- Krishnan Varadarajan, and Klaus Schulten. NAMD2: Greater scalability
- for parallel molecular dynamics. J. Comp. Phys., 151:283-312, 1999."
-
-Electronic documents will include a direct link to the official NAMD page
-at http://www.ks.uiuc.edu/Research/namd/
-
-7. Commercial use of the Software, or derivative works based thereon,
-REQUIRES A COMMERCIAL LICENSE. Should Licensee wish to make commercial
-use of the Software, Licensee will contact Illinois (namd@ks.uiuc.edu) to
-negotiate an appropriate license for such use. Commercial use includes:
-(1) integration of all or part of the Software into a product for sale,
-lease or license by or on behalf of Licensee to third parties, or
-(2) distribution of the Software to third parties that need it to
-commercialize product sold or licensed by or on behalf of Licensee.
-
-8. Government Rights. Because substantial governmental funds have been
-used in the development of NAMD, any possession, use or sublicense of the
-Software by or to the United States government shall be subject to such
-required restrictions.
-
-9. NAMD is being distributed as a research and teaching tool and as
-such, TCBG encourages contributions from users of the code that might, at
-Illinois' sole discretion, be used or incorporated to make the basic
-operating framework of the Software a more stable, flexible, and/or useful
-product. Licensees who contribute their code to become an internal
-portion of the Software agree that such code may be distributed by
-Illinois under the terms of this License and may be required to sign an
-"Agreement Regarding Contributory Code for NAMD Software" before Illinois
-can accept it (contact namd@ks.uiuc.edu for a copy).
-
-UNDERSTOOD AND AGREED.
-
-
-Contact Information:
-
-The best contact path for licensing issues is by e-mail to
-namd@ks.uiuc.edu or send correspondence to:
- NAMD Team
- Theoretical and Computational Biophysics Group
- Beckman Institute
- University of Illinois
- 405 North Mathews MC-251
- Urbana, Illinois 61801 USA
- FAX: (217) 244-6078
-
diff --git a/licenses/olivia b/licenses/olivia
deleted file mode 100644
index f8e85f490ef8..000000000000
--- a/licenses/olivia
+++ /dev/null
@@ -1,8 +0,0 @@
-Relating organizations and author have No liability for any loss of profits
-whatever arising from the use of this product. Permission to use and copy this
-software and its documentation is hereby granted.
-This software is free to be modified only for academic purpose and personal use.
-However, We do Not assume responsibility for any personally customized versions.
-
- Copyright (c) 2010 Olivia Developer Team, Hokkaido University.
-
diff --git a/licenses/procheck b/licenses/procheck
deleted file mode 100644
index 793379cc3cf8..000000000000
--- a/licenses/procheck
+++ /dev/null
@@ -1,230 +0,0 @@
-
-
- PROCHECK - Stereochemical Quality of Protein Structures
- -------------------------------------------------------
- and AQUA for PROCHECK-NMR
- -------------------------
-
- CONFIDENTIALITY AGREEMENT
- -------------------------
-
-
-
-In regard to the PROCHECK suite of programs, specified in Appendix 1
-herewith and the AQUA suite of programs specified in Appendix 2 herewith
-(the Software) supplied to us, the copyright and other intellectual
-property rights to which belong to the authors, we
-
- __________________________________________________________________
-
-undertake to the authors that we shall be bound by the following terms and
-conditions:-
-
-1. We will receive the Software and any related documentation in confidence
-and will not use the same except for the purpose of the department's own
-research. The Software will be used only by such of our officers or
-employees to whom it must reasonably be communicated to enable us to
-undertake our research and who agree to be bound by the same confidence.
-The department shall procure and enforce such agreement from its staff for
-the benefit of the authors.
-
-2. The publication of research using the Software must reference
-
- "Laskowski R A, MacArthur M W, Moss D S & Thornton J M (1993). PROCHECK:
- a program to check the stereochemical quality of protein
- structures. J. Appl. Cryst., 26, 283-291."
-
-and
-
- "Rullmann J A C (1996). AQUA, Computer Program, Department of NMR
- Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht
- University, The Netherlands."
-
-
-3. Research shall take place solely at the department's premises at
-
- __________________________________________________________________
-
-4. All forms of the Software will be kept in a reasonably secure place to
-prevent unauthorised access.
-
-5. Each copy of the Software or, if not practicable then, any package
-associated therewith shall be suitably marked (and such marking maintained)
-with the following copyright notice: " Copyright 1992 M W MacArthur, R A
-Laskowski, D S Moss, J A C Rullmann & J M Thornton All Rights Reserved".
-
-6. The Software may be modified but any changes made shall be made
-available to the authors.
-
-7. The Software shall be used exclusively for academic teaching and
-research. The Software will not be used for any commercial research or
-research associated with an industrial company.
-
-8. The confidentiality obligation in paragraph one shall not apply:
-
- (i) to information and data known to the department at the time of
- receipt hereunder (as evidenced by its written records);
-
- (ii) to information and data which was at the time of receipt in the
- public domain or thereafter becomes so through no wrongful act of
- the department;
-
- (iii) to information and data which the department receives from a third
- party not in breach of any obligation of confidentiality owed to
- the authors.
-
-
-
-Please sign this Undertaking and return a copy of it to indicate that you
-have read, understood and accepted the above terms.
-
-
-
- For and on behalf of _____________________________
-
- _________________________________________________
-
- ..................................................
-
- Dated ............................................
-
-
-
-
-APPENDIX 1 - DETAILS OF THE PROCHECK SUITE OF PROGRAMS PROVIDED (v.3.4.3)
----------------------------------------------------------------
-
-Files to be included
---------------------
-
- 1. anglen.f }
- 2. anglen.inc }
- 3. bplot.f }
- 4. bplot.inc }
- 5. brkcln.par }
- 6. clean.f }
- 7. gfac2pdb.f }
- 8. gfac2pdb.inc }
- 9. mplot.f }
- 10. mplot.inc } Source program files
- 11. nb.c }
- 12. pplot.f }
- 13. pplot.inc }
- 14. ps.f }
- 15. rmsdev.f }
- 16. rmsdev.inc }
- 17. secstr.f }
- 18. sstruc.par }
- 19. tplot.f }
- 20. tplot.inc }
- 21. viol2pdb.f }
- 22. viol2pdb.inc }
- 23. vplot.f }
- 24. vplot.inc }
- 25. gfac2pdb.scr }
- 26. procheck.com }
- 27. procheck.scr }
- 28. procheck_comp.com }
- 29. procheck_comp.scr }
- 30. procheck_nmr.scr }
- 31. proplot.com }
- 32. proplot.scr } Script files
- 33. proplot_comp.scr }
- 34. proplot_nmr.scr }
- 35. proplot_comp.com }
- 36. prosub.com }
- 37. setup.com }
- 38. setup.scr }
- 39. viol2pdb.scr }
- 40. convax.for }
- 41. procomp.com } Installation files
- 42. procomp.scr }
- 43. maninst.ps }
- 44. manual.tar.Z } Documentation files
- 45. nmr_manual.tar.Z }
- 46. procheck.dat }
- 47. procheck.prm } Data
- 48. procheck_comp.prm } files
- 49. procheck_nmr.prm }
-
-
-APPENDIX 2 - DETAILS OF THE AQUA SUITE OF PROGRAMS PROVIDED (v.0.40)
------------------------------------------------------------
-
-Files to be included
---------------------
-
-Source files:-
-------------
-
-AquaCalc.c AquaCalc.h
- AquaData.h
-AquaDist.c AquaDist.h
-AquaFiles.c AquaFiles.h
-AquaFuncts.c AquaFuncts.h
-AquaFuncts_biosym.c AquaFuncts_biosym.h
-AquaFuncts_cv.c AquaFuncts_cv.h
-AquaFuncts_io.c AquaFuncts_io.h
-AquaFuncts_pdb.c AquaFuncts_pdb.h
-AquaFuncts_pdbmr.c AquaFuncts_pdbmr.h
-AquaHow.c AquaHow.h
- AquaMacros.h
-AquaPseudo.c AquaPseudo.h
-AquaStrucset.c AquaStrucset.h
- AquaTypes.h
-AquaWhat.c AquaWhat.h
-Qext.c Qext.h
-Range.c Range.h
- cv_subs.h
-
-Script files:-
-------------
-ReadNrv.pm* convDIANAtorsrestr qdbext*
-aqdrst* convDISGEOdistrestr qguessc*
-aqpc* convDISGEOtorsrestr qguessr*
-aqpcsel convMRTABLE qhelp*
-aquanal.pl* convXPLORdistrestr qmodr*
-clean0* convXPLORtorsrestr qsplitr*
-convBIOSYMdistrestr makecmm* qsumm*
-convBIOSYMtorsrestr qconvert* qsumm_aux1*
-convDIANAdistrestr qconvr* qsumm_aux2*
-
-Documentation:-
--------------
-README models.txt qconvr.txt
-aqpc.txt mr.txt qdbext.txt
-aqua_setup.txt names.txt qext.txt
-biosym.txt overview.txt qhelp.txt
-chains.txt perl.txt qsumm.txt
-conversion.txt procheck.txt restraint_format.txt
-dbas.txt qanal.txt setup.txt
-intro.txt qclean.txt torsion.txt
-log.txt qconvert.txt xplor.txt
-
-Extras:-
-------
-joinpdb* splitpdb*
-
-
-
-Please complete the above form, sign it, and then send or fax to:-
-
-
-Roman Laskowski
-European Bioinformatics Institute,
-Wellcome Trust Genome Campus,
-Hinxton,
-Cambridge, CB10 1SD,
-United Kingdom
-
-Fax:- +44 (0)1223 494 468
-
-If you have any problems either installing the software or running it,
-please e-mail your problems to:-
-
- roman@ebi.ac.uk
-
-Questions about AQUA should be directed to Ton Rullmann at
-
- rull@nmr.chem.ruu.nl
-