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-rw-r--r--licenses/BL48
-rw-r--r--licenses/FatFs24
-rw-r--r--licenses/GPL-2-with-exceptions352
-rw-r--r--licenses/GPL-3+-with-openssl-exception16
-rw-r--r--licenses/MAJESTY-DEMO140
-rw-r--r--licenses/Manifest.gzbin106774 -> 105927 bytes
-rw-r--r--licenses/NVIDIA-NVLM28
-rw-r--r--licenses/PUEL-12166
-rw-r--r--licenses/SIP49
-rw-r--r--licenses/namd144
-rw-r--r--licenses/olivia8
-rw-r--r--licenses/procheck230
12 files changed, 206 insertions, 999 deletions
diff --git a/licenses/BL b/licenses/BL
deleted file mode 100644
index 606d3ef6cef0..000000000000
--- a/licenses/BL
+++ /dev/null
@@ -1,48 +0,0 @@
-Blender License 1.0 (the "BL", see http://www.blender.org/BL/ ).
-
-Copyright (C) 2002 Blender Foundation. All Rights Reserved.
-
-For teams that don't want to operate under the GPL, we're also offering
-this "non-GPL" Blender License option. This means that you can download
-the latest sources and tools via FTP or CVS from our site and sign an
-additional agreement with the Blender Foundation, so you can keep your
-source modifications confidential. Contact the Blender Foundation via
-email at license@blender.org so we can discuss how we handle the
-practical matters.
-
-A signed agreement allows you to do business with proprietary code, make
-special derived versions, sell executables, projects or services,
-provided that:
-
-1. The BL-ed code remains copyrighted by the original owners, and cannot
-be transferred to other parties
-
-2. The BL-ed code cannot be published or re-distributed in any way, and
-only be available for the internal staff that works directly on the
-software itself. Employees of partners with which you co-develop on the
-projects that include BL-ed code are considered 'internal staff' also.
-
-3. The BL-ed code can be used (sold, distributed) in parts or in its
-whole only as an executable or as a compiled library/module and its
-header files.
-
-4. The usage of the name Blender or the Blender logo is not included in
-this license. Instead 'including Blender Foundation release X' (or
-similar) can be used, with 'X' the version number of the initial Blender
-Foundation release which you started with.
-
-5. Note that this BL has no authority over some of the external
-libraries licenses which Blender links with.
-
-Additionally you get :
-
-1. The right to use Blender Foundation source updates for a 1 year
-period.
-
-2. Support. Details to be determined by the additional agreement.
-
-You are invited to donate your proprietary changes back to the open
-source community after a reasonable time period. You are of course free
-to choose not to do this.
-
-End of BL terms and conditions.
diff --git a/licenses/FatFs b/licenses/FatFs
new file mode 100644
index 000000000000..a9e57a905ad4
--- /dev/null
+++ b/licenses/FatFs
@@ -0,0 +1,24 @@
+FatFs License
+
+FatFs has being developped as a personal project of the author, ChaN. It is free from the code anyone else wrote at current release. Following code block shows a copy of the FatFs license document that heading the source files.
+
+/*----------------------------------------------------------------------------/
+/ FatFs - Generic FAT Filesystem Module Rx.xx /
+/-----------------------------------------------------------------------------/
+/
+/ Copyright (C) 20xx, ChaN, all right reserved.
+/
+/ FatFs module is an open source software. Redistribution and use of FatFs in
+/ source and binary forms, with or without modification, are permitted provided
+/ that the following condition is met:
+/
+/ 1. Redistributions of source code must retain the above copyright notice,
+/ this condition and the following disclaimer.
+/
+/ This software is provided by the copyright holder and contributors "AS IS"
+/ and any warranties related to this software are DISCLAIMED.
+/ The copyright owner or contributors be NOT LIABLE for any damages caused
+/ by use of this software.
+/----------------------------------------------------------------------------*/
+
+Therefore FatFs license is one of the BSD-style licenses, but there is a significant feature. FatFs is mainly intended for embedded systems. In order to extend the usability for commercial products, the redistributions of FatFs in binary form, such as embedded code, binary library and any forms without source code, do not need to include about FatFs in the documentations. This is equivalent to the 1-clause BSD license. Of course FatFs is compatible with the most of open source software licenses include GNU GPL. When you redistribute the FatFs source code with changes or create a fork, the license can also be changed to GNU GPL, BSD-style license or any open source software license that not conflict with FatFs license.
diff --git a/licenses/GPL-2-with-exceptions b/licenses/GPL-2-with-exceptions
deleted file mode 100644
index 7083773f9f66..000000000000
--- a/licenses/GPL-2-with-exceptions
+++ /dev/null
@@ -1,352 +0,0 @@
-NOTE: This is the GPL with specific exceptions added by packages to extend your rights under the GPL. The specific exception(s) for the package can be found in the source tarball.
-
-Exceptions follow,
-
-// As a special exception, if other files instantiate templates or use macros
-// or inline functions from this file, or you compile this file and link it
-// with other works to produce a work based on this file, this file does not
-// by itself cause the resulting work to be covered by the GNU General Public
-// License. This exception does not invalidate any other reasons why a work
-// based on this file might be covered by the GNU General Public License.
-
-End of exceptions. The rest of this file is the GPL.
-
- GNU GENERAL PUBLIC LICENSE
- Version 2, June 1991
-
- Copyright (C) 1989, 1991 Free Software Foundation, Inc.,
- 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
- Everyone is permitted to copy and distribute verbatim copies
- of this license document, but changing it is not allowed.
-
- Preamble
-
- The licenses for most software are designed to take away your
-freedom to share and change it. By contrast, the GNU General Public
-License is intended to guarantee your freedom to share and change free
-software--to make sure the software is free for all its users. This
-General Public License applies to most of the Free Software
-Foundation's software and to any other program whose authors commit to
-using it. (Some other Free Software Foundation software is covered by
-the GNU Lesser General Public License instead.) You can apply it to
-your programs, too.
-
- When we speak of free software, we are referring to freedom, not
-price. Our General Public Licenses are designed to make sure that you
-have the freedom to distribute copies of free software (and charge for
-this service if you wish), that you receive source code or can get it
-if you want it, that you can change the software or use pieces of it
-in new free programs; and that you know you can do these things.
-
- To protect your rights, we need to make restrictions that forbid
-anyone to deny you these rights or to ask you to surrender the rights.
-These restrictions translate to certain responsibilities for you if you
-distribute copies of the software, or if you modify it.
-
- For example, if you distribute copies of such a program, whether
-gratis or for a fee, you must give the recipients all the rights that
-you have. You must make sure that they, too, receive or can get the
-source code. And you must show them these terms so they know their
-rights.
-
- We protect your rights with two steps: (1) copyright the software, and
-(2) offer you this license which gives you legal permission to copy,
-distribute and/or modify the software.
-
- Also, for each author's protection and ours, we want to make certain
-that everyone understands that there is no warranty for this free
-software. If the software is modified by someone else and passed on, we
-want its recipients to know that what they have is not the original, so
-that any problems introduced by others will not reflect on the original
-authors' reputations.
-
- Finally, any free program is threatened constantly by software
-patents. We wish to avoid the danger that redistributors of a free
-program will individually obtain patent licenses, in effect making the
-program proprietary. To prevent this, we have made it clear that any
-patent must be licensed for everyone's free use or not licensed at all.
-
- The precise terms and conditions for copying, distribution and
-modification follow.
-
- GNU GENERAL PUBLIC LICENSE
- TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
-
- 0. This License applies to any program or other work which contains
-a notice placed by the copyright holder saying it may be distributed
-under the terms of this General Public License. The "Program", below,
-refers to any such program or work, and a "work based on the Program"
-means either the Program or any derivative work under copyright law:
-that is to say, a work containing the Program or a portion of it,
-either verbatim or with modifications and/or translated into another
-language. (Hereinafter, translation is included without limitation in
-the term "modification".) Each licensee is addressed as "you".
-
-Activities other than copying, distribution and modification are not
-covered by this License; they are outside its scope. The act of
-running the Program is not restricted, and the output from the Program
-is covered only if its contents constitute a work based on the
-Program (independent of having been made by running the Program).
-Whether that is true depends on what the Program does.
-
- 1. You may copy and distribute verbatim copies of the Program's
-source code as you receive it, in any medium, provided that you
-conspicuously and appropriately publish on each copy an appropriate
-copyright notice and disclaimer of warranty; keep intact all the
-notices that refer to this License and to the absence of any warranty;
-and give any other recipients of the Program a copy of this License
-along with the Program.
-
-You may charge a fee for the physical act of transferring a copy, and
-you may at your option offer warranty protection in exchange for a fee.
-
- 2. You may modify your copy or copies of the Program or any portion
-of it, thus forming a work based on the Program, and copy and
-distribute such modifications or work under the terms of Section 1
-above, provided that you also meet all of these conditions:
-
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- stating that you changed the files and the date of any change.
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- b) You must cause any work that you distribute or publish, that in
- whole or in part contains or is derived from the Program or any
- part thereof, to be licensed as a whole at no charge to all third
- parties under the terms of this License.
-
- c) If the modified program normally reads commands interactively
- when run, you must cause it, when started running for such
- interactive use in the most ordinary way, to print or display an
- announcement including an appropriate copyright notice and a
- notice that there is no warranty (or else, saying that you provide
- a warranty) and that users may redistribute the program under
- these conditions, and telling the user how to view a copy of this
- License. (Exception: if the Program itself is interactive but
- does not normally print such an announcement, your work based on
- the Program is not required to print an announcement.)
-
-These requirements apply to the modified work as a whole. If
-identifiable sections of that work are not derived from the Program,
-and can be reasonably considered independent and separate works in
-themselves, then this License, and its terms, do not apply to those
-sections when you distribute them as separate works. But when you
-distribute the same sections as part of a whole which is a work based
-on the Program, the distribution of the whole must be on the terms of
-this License, whose permissions for other licensees extend to the
-entire whole, and thus to each and every part regardless of who wrote it.
-
-Thus, it is not the intent of this section to claim rights or contest
-your rights to work written entirely by you; rather, the intent is to
-exercise the right to control the distribution of derivative or
-collective works based on the Program.
-
-In addition, mere aggregation of another work not based on the Program
-with the Program (or with a work based on the Program) on a volume of
-a storage or distribution medium does not bring the other work under
-the scope of this License.
-
- 3. You may copy and distribute the Program (or a work based on it,
-under Section 2) in object code or executable form under the terms of
-Sections 1 and 2 above provided that you also do one of the following:
-
- a) Accompany it with the complete corresponding machine-readable
- source code, which must be distributed under the terms of Sections
- 1 and 2 above on a medium customarily used for software interchange; or,
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- b) Accompany it with a written offer, valid for at least three
- years, to give any third party, for a charge no more than your
- cost of physically performing source distribution, a complete
- machine-readable copy of the corresponding source code, to be
- distributed under the terms of Sections 1 and 2 above on a medium
- customarily used for software interchange; or,
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- c) Accompany it with the information you received as to the offer
- to distribute corresponding source code. (This alternative is
- allowed only for noncommercial distribution and only if you
- received the program in object code or executable form with such
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- 4. You may not copy, modify, sublicense, or distribute the Program
-except as expressly provided under this License. Any attempt
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-void, and will automatically terminate your rights under this License.
-However, parties who have received copies, or rights, from you under
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-
- 5. You are not required to accept this License, since you have not
-signed it. However, nothing else grants you permission to modify or
-distribute the Program or its derivative works. These actions are
-prohibited by law if you do not accept this License. Therefore, by
-modifying or distributing the Program (or any work based on the
-Program), you indicate your acceptance of this License to do so, and
-all its terms and conditions for copying, distributing or modifying
-the Program or works based on it.
-
- 6. Each time you redistribute the Program (or any work based on the
-Program), the recipient automatically receives a license from the
-original licensor to copy, distribute or modify the Program subject to
-these terms and conditions. You may not impose any further
-restrictions on the recipients' exercise of the rights granted herein.
-You are not responsible for enforcing compliance by third parties to
-this License.
-
- 7. If, as a consequence of a court judgment or allegation of patent
-infringement or for any other reason (not limited to patent issues),
-conditions are imposed on you (whether by court order, agreement or
-otherwise) that contradict the conditions of this License, they do not
-excuse you from the conditions of this License. If you cannot
-distribute so as to satisfy simultaneously your obligations under this
-License and any other pertinent obligations, then as a consequence you
-may not distribute the Program at all. For example, if a patent
-license would not permit royalty-free redistribution of the Program by
-all those who receive copies directly or indirectly through you, then
-the only way you could satisfy both it and this License would be to
-refrain entirely from distribution of the Program.
-
-If any portion of this section is held invalid or unenforceable under
-any particular circumstance, the balance of the section is intended to
-apply and the section as a whole is intended to apply in other
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-
-It is not the purpose of this section to induce you to infringe any
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-such claims; this section has the sole purpose of protecting the
-integrity of the free software distribution system, which is
-implemented by public license practices. Many people have made
-generous contributions to the wide range of software distributed
-through that system in reliance on consistent application of that
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-to distribute software through any other system and a licensee cannot
-impose that choice.
-
-This section is intended to make thoroughly clear what is believed to
-be a consequence of the rest of this License.
-
- 8. If the distribution and/or use of the Program is restricted in
-certain countries either by patents or by copyrighted interfaces, the
-original copyright holder who places the Program under this License
-may add an explicit geographical distribution limitation excluding
-those countries, so that distribution is permitted only in or among
-countries not thus excluded. In such case, this License incorporates
-the limitation as if written in the body of this License.
-
- 9. The Free Software Foundation may publish revised and/or new versions
-of the General Public License from time to time. Such new versions will
-be similar in spirit to the present version, but may differ in detail to
-address new problems or concerns.
-
-Each version is given a distinguishing version number. If the Program
-specifies a version number of this License which applies to it and "any
-later version", you have the option of following the terms and conditions
-either of that version or of any later version published by the Free
-Software Foundation. If the Program does not specify a version number of
-this License, you may choose any version ever published by the Free Software
-Foundation.
-
- 10. If you wish to incorporate parts of the Program into other free
-programs whose distribution conditions are different, write to the author
-to ask for permission. For software which is copyrighted by the Free
-Software Foundation, write to the Free Software Foundation; we sometimes
-make exceptions for this. Our decision will be guided by the two goals
-of preserving the free status of all derivatives of our free software and
-of promoting the sharing and reuse of software generally.
-
- NO WARRANTY
-
- 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
-FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN
-OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
-PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
-OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS
-TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE
-PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
-REPAIR OR CORRECTION.
-
- 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
-WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
-REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
-INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
-OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
-TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
-YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
-PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
-POSSIBILITY OF SUCH DAMAGES.
-
- END OF TERMS AND CONDITIONS
-
- How to Apply These Terms to Your New Programs
-
- If you develop a new program, and you want it to be of the greatest
-possible use to the public, the best way to achieve this is to make it
-free software which everyone can redistribute and change under these terms.
-
- To do so, attach the following notices to the program. It is safest
-to attach them to the start of each source file to most effectively
-convey the exclusion of warranty; and each file should have at least
-the "copyright" line and a pointer to where the full notice is found.
-
- <one line to give the program's name and a brief idea of what it does.>
- Copyright (C) <year> <name of author>
-
- This program is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License along
- with this program; if not, write to the Free Software Foundation, Inc.,
- 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-
-Also add information on how to contact you by electronic and paper mail.
-
-If the program is interactive, make it output a short notice like this
-when it starts in an interactive mode:
-
- Gnomovision version 69, Copyright (C) year name of author
- Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
- This is free software, and you are welcome to redistribute it
- under certain conditions; type `show c' for details.
-
-The hypothetical commands `show w' and `show c' should show the appropriate
-parts of the General Public License. Of course, the commands you use may
-be called something other than `show w' and `show c'; they could even be
-mouse-clicks or menu items--whatever suits your program.
-
-You should also get your employer (if you work as a programmer) or your
-school, if any, to sign a "copyright disclaimer" for the program, if
-necessary. Here is a sample; alter the names:
-
- Yoyodyne, Inc., hereby disclaims all copyright interest in the program
- `Gnomovision' (which makes passes at compilers) written by James Hacker.
-
- <signature of Ty Coon>, 1 April 1989
- Ty Coon, President of Vice
-
-This General Public License does not permit incorporating your program into
-proprietary programs. If your program is a subroutine library, you may
-consider it more useful to permit linking proprietary applications with the
-library. If this is what you want to do, use the GNU Lesser General
-Public License instead of this License.
diff --git a/licenses/GPL-3+-with-openssl-exception b/licenses/GPL-3+-with-openssl-exception
new file mode 100644
index 000000000000..62dee742f9c5
--- /dev/null
+++ b/licenses/GPL-3+-with-openssl-exception
@@ -0,0 +1,16 @@
+GNU General Public License, version 3 or any later version.
+See GPL-3 for the full text of this license.
+
+
+ Exception
+
+ In addition, as a special exception, the copyright holders give permission
+to link the code of portions of this program with the OpenSSL library under
+certain conditions as described in each individual source file, and distribute
+linked combinations including the two.
+You must obey the GNU General Public License in all respects for all of the
+code used other than OpenSSL. If you modify file(s) with this exception, you
+may extend this exception to your version of the file(s), but you are not
+obligated to do so. If you do not wish to do so, delete this exception
+statement from your version. If you delete this exception statement from all
+source files in the program, then also delete it here.
diff --git a/licenses/MAJESTY-DEMO b/licenses/MAJESTY-DEMO
deleted file mode 100644
index 7f82374fb991..000000000000
--- a/licenses/MAJESTY-DEMO
+++ /dev/null
@@ -1,140 +0,0 @@
-End User License Agreement
-YOU SHOULD CAREFULLY READ THE FOLLOWING END USER LICENSE AGREEMENT
-BEFORE INSTALLING THIS SOFTWARE PROGRAM. BY INSTALLING OR OTHERWISE
-USING THE SOFTWARE PROGRAM, YOU AGREE TO BE BOUND BY THE TERMS OF THIS
-AGREEMENT.
-
-This software program (the "Program"), any printed materials, any
-on-line or electronic documentation (the "Manuals"), and any and all
-copies and derivative works of such software program are the
-copyrighted work of Linux Game Publishing LTD and its licensors. All
-rights reserved, except as expressly stated herein. All use of the
-Program is governed by the terms of this End User License Agreement
-("License Agreement"). The Program is solely for use by end users
-according to the terms of the Licence Agreement. Any use, reproduction
-or redistribution of the Program not in accordance with the terms of
-the Licence Agreement is expressly prohibited.
-
-1. Limited Use License. Linux Game Publishing ("LGP") hereby grants,
-and by installing the Program you thereby accept, a limited,
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-5. Termination. The License Agreement is effective until
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-destroying the Program. LGP may, at its discretion, terminate this
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-6. Export Controls. The program may not be re-exported, downloaded,
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-7. Limited Warranty. Except as expressly and unambiguously set forth
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-9. Equitable Remedies. You hereby agree that LGP would be irreparably
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-bond, other security, or proof of damages, to appropriate equitable
-remedies with respect to breaches of this License Agreement, in
-addition to such other remedies as LGP may otherwise have available to
-it under applicable laws. In the event that any litigation is brought
-by either party in connection with this License Agreement, the
-prevailing party in such litigation shall be entitled to recover from
-the other party all the costs, attorney's fees and other expenses
-incurred by such prevailing party in the litigation.
-
-10. Limitations on License. Nothing in this License Agreement shall
-preclude you from making or authorizing the making of copies of
-the Program provided, however, that all copies are complete and exact
-copies of the original, including this license.
-
-11. Miscellaneous. This License Agreement shall be deemed to have been
-made and executed in the United Kingdom and any dispute arising
-hereunder shall be resolved in accordance with the laws of the UK. You
-agree that any claim asserted in any legal proceeding by one of the
-parties against the other shall be commenced and maintained in the
-appropriate court located in Nottingham, England, having subject
-matter jurisdiction with respect to the dispute between the
-parties. This License Agreement may be amended, altered or modified
-only by an instrument in writing, specifying such amendment,
-alteration or modification, executed by both parties. In the event
-that any provision of this License Agreement shall be held by a court
-or other tribunal of competent jurisdiction shall be unenforceable,
-such provision will be enforced to the maximum extent permissible and
-the remaining portions of this License Agreement shall remain in full
-force and effect. This License Agreement constituted and contains the
-entire agreement between the parties with respect to the subject
-matter hereof and supersedes any prior oral or written agreements. You
-hereby acknowledge that you have read and understand the forgoing
-License Agreement and agree that the action of installing the Program
-is an express acknowledgment of your agreement to be bound by the
-terms and conditions of this License Agreement. You also acknowledge
-and agree that this License Agreement is the complete and exclusive
-statement of the agreement between you and LGP and that this License
-Agreement supersedes any prior or contemporaneous agreement, either
-oral or written, and any other communications between you and LGP.
-
-Linux Game Publishing LTD
-17 Rossington Road
-Nottingham, NG2 4HX, England
diff --git a/licenses/Manifest.gz b/licenses/Manifest.gz
index e79a9d2b883d..07b0cd3f986b 100644
--- a/licenses/Manifest.gz
+++ b/licenses/Manifest.gz
Binary files differ
diff --git a/licenses/NVIDIA-NVLM b/licenses/NVIDIA-NVLM
deleted file mode 100644
index 2c878c87ea71..000000000000
--- a/licenses/NVIDIA-NVLM
+++ /dev/null
@@ -1,28 +0,0 @@
- * This source code is subject to NVIDIA ownership rights under U.S. and
- * international Copyright laws. Users and possessors of this source code
- * are hereby granted a nonexclusive, royalty-free license to use this code
- * in individual and commercial software.
- *
- * NVIDIA MAKES NO REPRESENTATION ABOUT THE SUITABILITY OF THIS SOURCE
- * CODE FOR ANY PURPOSE. IT IS PROVIDED "AS IS" WITHOUT EXPRESS OR
- * IMPLIED WARRANTY OF ANY KIND. NVIDIA DISCLAIMS ALL WARRANTIES WITH
- * REGARD TO THIS SOURCE CODE, INCLUDING ALL IMPLIED WARRANTIES OF
- * MERCHANTABILITY, NONINFRINGEMENT, AND FITNESS FOR A PARTICULAR PURPOSE.
- * IN NO EVENT SHALL NVIDIA BE LIABLE FOR ANY SPECIAL, INDIRECT, INCIDENTAL,
- * OR CONSEQUENTIAL DAMAGES, OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
- * OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
- * OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
- * OR PERFORMANCE OF THIS SOURCE CODE.
- *
- * U.S. Government End Users. This source code is a "commercial item" as
- * that term is defined at 48 C.F.R. 2.101 (OCT 1995), consisting of
- * "commercial computer software" and "commercial computer software
- * documentation" as such terms are used in 48 C.F.R. 12.212 (SEPT 1995)
- * and is provided to the U.S. Government only as a commercial end item.
- * Consistent with 48 C.F.R.12.212 and 48 C.F.R. 227.7202-1 through
- * 227.7202-4 (JUNE 1995), all U.S. Government End Users acquire the
- * source code with only those rights set forth herein.
- *
- * Any use of this source code in individual and commercial software must
- * include, in the user documentation and internal comments to the code,
- * the above Disclaimer and U.S. Government End Users Notice.
diff --git a/licenses/PUEL-12 b/licenses/PUEL-12
new file mode 100644
index 000000000000..eb4d751bd3f1
--- /dev/null
+++ b/licenses/PUEL-12
@@ -0,0 +1,166 @@
+VirtualBox Extension Pack Personal Use and Educational License (PUEL)
+
+License version 12, 22 July 2024
+
+PLEASE READ THE FOLLOWING ORACLE VIRTUALBOX EXTENSION PACK PERSONAL USE
+AND EDUCATIONAL LICENSE CAREFULLY BEFORE DOWNLOADING OR USING THE ORACLE
+SOFTWARE. THESE TERMS AND CONDITIONS CONSTITUTE A LEGAL AGREEMENT BETWEEN
+YOU AND ORACLE.
+
+ORACLE AMERICA, INC. ("ORACLE") IS WILLING TO LICENSE THE PRODUCT DEFINED
+IN SECTION 1 BELOW ONLY ON THE CONDITION THAT YOU ACCEPT ALL OF THE TERMS
+CONTAINED IN THIS VIRTUALBOX EXTENSION PACK PERSONAL USE AND EDUCATIONAL
+LICENSE AGREEMENT ("AGREEMENT").
+
+IF YOU ARE AGREEING TO THIS LICENSE ON BEHALF OF AN ENTITY (RATHER THAN
+AS AN INDIVIDUAL HUMAN BEING), YOU REPRESENT THAT YOU HAVE THE APPROPRIATE
+AUTHORITY TO ACCEPT THESE TERMS AND CONDITIONS ON BEHALF OF SUCH ENTITY.
+
+1 SUBJECT OF AGREEMENT. This Agreement governs your use of the binary
+software package called "Oracle VirtualBox Extension Pack" (the
+"Product"), which contains a set of additional features for "Oracle
+VirtualBox" that enhance the operation of multiple virtual machines
+("Guest Computers") on a single physical computer ("Host Computer"). The
+Product consists of executable files in machine code, script files, data
+files, and all documentation and updates provided to You by Oracle.
+
+2 GRANT OF LICENSE. Oracle grants you a personal, non-exclusive,
+non-transferable, limited license without fees to reproduce, install,
+execute, and use internally the Product on Host Computers for your
+Personal Use, or Educational Use. "Personal Use" is noncommercial use
+solely by the person downloading the Product from Oracle on a single Host
+Computer, provided that no more than one client or remote computer is
+connected to that Host Computer and that client or remote computer is used
+solely to remotely view the Guest Computer(s). "Educational Use" is any
+use by teachers or students in an academic institution (schools, colleges
+and universities) as part of the institution's educational curriculum.
+Personal Use and/or Educational Use expressly exclude any use of the
+Product for commercial purposes or to operate, run, or act on behalf of or
+for the benefit of a business, organization, governmental organization, or
+educational institution.
+
+Oracle reserves all rights not expressly granted in this license.
+
+3 RESTRICTIONS AND RESERVATION OF RIGHTS.
+
+(1) The Product and copies thereof provided to you under this Agreement
+are copyrighted and licensed, not sold, to you by Oracle.
+
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+Product; (c) remove or alter any proprietary legends or notices contained
+in the Product; or (d) decompile, or reverse engineer the Product
+(except to the extent permitted by applicable law).
+
+(3) The Product is not designed, licensed or intended for use in the
+design, construction, operation or maintenance of any nuclear facility
+and Oracle and its licensors disclaim any express or implied warranty
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+or trade name of Oracle or its licensors is granted under this Agreement.
+
+4 TERMINATION. The Agreement is effective on the date you receive the
+Product and remains effective until terminated. Your rights under this
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+Product (including but not limited to any use of the Product outside the
+scope of the license provided in the Agreement). Sections 3-9, inclusive,
+will survive termination of the Agreement.
+
+5 DISCLAIMER OF WARRANTY. TO THE EXTENT NOT PROHIBITED BY APPLICABLE LAW,
+ORACLE PROVIDES THE PRODUCT "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER
+EXPRESS OR IMPLIED. WITHOUT LIMITING THE FOREGOING, ORACLE SPECIFICALLY
+DISCLAIMS ANY IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A
+PARTICULAR PURPOSE, TITLE, AND NON-INFRINGEMENT. The entire risk as
+to the quality and performance of the Product is with you. Should it
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+or correction.
+
+6 LIMITATION OF LIABILITY. TO THE EXTENT NOT PROHIBITED BY APPLICABLE LAW,
+IN NO EVENT WILL ORACLE OR ITS LICENSORS BE LIABLE FOR ANY LOST REVENUE,
+PROFIT, DATA, OR DATA USE, OR FOR SPECIAL, INDIRECT, CONSEQUENTIAL,
+INCIDENTAL OR PUNITIVE DAMAGES, HOWEVER CAUSED REGARDLESS OF THE THEORY
+OF LIABILITY, ARISING OUT OF OR RELATED TO THE USE OF OR INABILITY TO
+USE THE PRODUCT, EVEN IF ORACLE HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES. In no event will Oracle's liability to you, whether in
+contract, tort (including negligence), or otherwise, exceed the amount
+paid by you for the Product under this Agreement.
+
+7 SEPARATELY LICENSED THIRD PARTY TECHNOLOGY. The Product may contain
+or require the use of third party technology that is provided with
+the Product. Oracle may provide certain notices to you in the Product's
+documentation, readmes or notice files in connection with such third party
+technology. Third party technology will be licensed to you either under
+the terms of this Agreement or, if specified in the documentation, readmes
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+in any way by this Agreement. However, for clarity, notwithstanding the
+existence of a notice, third party technology that is not Separately
+Licensed Third Party Technology shall be deemed part of the Product and
+is licensed to You under the terms of this Agreement. "Separate Terms"
+refers to separate license terms that are specified in the Product's
+documentation, readmes or notice files and that apply to Separately
+Licensed Third Party Technology. "Separately Licensed Third Party
+Technology" refers to third party technology that is licensed under
+Separate Terms and not under the terms of this Agreement.
+
+8 EXPORT. Export laws and regulations of the United States and any other
+relevant local export laws and regulations apply to the Product. You
+agree that such export laws govern your use of the Product (including
+technical data) provided under this Agreement, and you agree to comply
+with all such export laws and regulations (including "deemed export" and
+"deemed re-export" regulations). You agree that no data, information,
+and/or Product (or direct product thereof) will be exported, directly or
+indirectly, in violation of these laws, or will be used for any purpose
+prohibited by these laws including, without limitation, nuclear, chemical,
+or biological weapons proliferation, or development of missile technology.
+
+9 U.S. GOVERNMENT END USERS. Oracle programs, including the Product,
+any operating system, integrated software, any programs installed on
+hardware, and/or documentation, delivered to U.S. Government end users
+are "commercial computer software" pursuant to the applicable Federal
+Acquisition Regulation and agency-specific supplemental regulations. As
+such, use, duplication, disclosure, modification, and adaptation of
+the programs, including any operating system, integrated software,
+any programs installed on the hardware, and/or documentation, shall
+be subject to license terms and license restrictions applicable to the
+programs. No other rights are granted to the U.S. Government.
+
+10 MISCELLANEOUS. This Agreement is the entire agreement between you
+and Oracle relating to its subject matter. It supersedes all prior or
+contemporaneous oral or written communications, proposals, representations
+and warranties and prevails over any conflicting or additional terms
+of any quote, order, acknowledgment, or other communication between
+the parties relating to its subject matter during the term of this
+Agreement. No modification of this Agreement will be binding, unless in
+writing and signed by an authorized representative of each party. If any
+provision of this Agreement is held to be unenforceable, this Agreement
+will remain in effect with the provision omitted, unless omission would
+frustrate the intent of the parties, in which case this Agreement will
+immediately terminate. This Agreement is governed by the laws of the
+State of California, USA, and you and Oracle agree to submit to the
+exclusive jurisdiction of, and venue in, the courts of San Francisco
+or Santa Clara counties in California in any dispute arising out of or
+relating to this Agreement. Upon 45 days written notice, Oracle may
+audit your use of the Product to confirm that you are in compliance
+with the terms of this Agreement. You agree to cooperate with Oracle's
+audit and provide reasonable assistance and access to information. Any
+such audit shall not unreasonably interfere with your normal business
+operations. You agree to pay within 30 days of written notification
+any fees applicable to your unlicensed use of the Product. You agree
+that Oracle shall not be responsible for any of your costs incurred in
+cooperating with the audit. If a legal action or proceeding is commenced
+by either party in connection with the enforcement of this Agreement,
+the prevailing party shall be entitled to its costs and attorneys'
+fees actually incurred in connection with such action or proceeding.
diff --git a/licenses/SIP b/licenses/SIP
deleted file mode 100644
index 9406c3085a75..000000000000
--- a/licenses/SIP
+++ /dev/null
@@ -1,49 +0,0 @@
-RIVERBANK COMPUTING LIMITED LICENSE AGREEMENT FOR SIP
-
-1. This LICENSE AGREEMENT ("the SIP License") is between Riverbank Computing
-Limited ("Riverbank"), and the Individual or Organization ("Licensee")
-accessing and otherwise using SIP software in source or binary form and its
-associated documentation. SIP comprises a software tool for generating Python
-bindings for software C and C++ libraries, and a Python extension module used
-at runtime by those generated bindings. This License Agreement may also be
-applied to other software packages written by Riverbank.
-
-2. Subject to the terms and conditions of this License Agreement, Riverbank
-hereby grants Licensee a nonexclusive, royalty-free, world-wide license to
-reproduce, analyze, test, perform and/or display publicly, prepare derivative
-works, distribute, and otherwise use SIP alone or in any derivative version,
-provided, however, that Riverbank's License Agreement and Riverbank's notice of
-copyright, e.g., "Copyright (c) 2015 Riverbank Computing Limited; All Rights
-Reserved" are retained in SIP alone or in any derivative version prepared by
-Licensee.
-
-3. In the event Licensee prepares a derivative work that is based on or
-incorporates SIP or any part thereof, and wants to make the derivative work
-available to others as provided herein, then Licensee hereby agrees to include
-in any such work a brief summary of the changes made to SIP.
-
-4. Licensee may not use SIP to generate Python bindings for any C or C++
-library for which bindings are already provided by Riverbank.
-
-5. Riverbank is making SIP available to Licensee on an "AS IS" basis.
-RIVERBANK MAKES NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR IMPLIED. BY WAY
-OF EXAMPLE, BUT NOT LIMITATION, RIVERBANK MAKES NO AND DISCLAIMS ANY
-REPRESENTATION OR WARRANTY OF MERCHANTABILITY OR FITNESS FOR ANY PARTICULAR
-PURPOSE OR THAT THE USE OF SIP WILL NOT INFRINGE ANY THIRD PARTY RIGHTS.
-
-6. RIVERBANK SHALL NOT BE LIABLE TO LICENSEE OR ANY OTHER USERS OF SIP FOR ANY
-INCIDENTAL, SPECIAL, OR CONSEQUENTIAL DAMAGES OR LOSS AS A RESULT OF MODIFYING,
-DISTRIBUTING, OR OTHERWISE USING SIP, OR ANY DERIVATIVE THEREOF, EVEN IF
-ADVISED OF THE POSSIBILITY THEREOF.
-
-7. This License Agreement will automatically terminate upon a material breach
-of its terms and conditions.
-
-8. Nothing in this License Agreement shall be deemed to create any relationship
-of agency, partnership, or joint venture between Riverbank and Licensee. This
-License Agreement does not grant permission to use Riverbank trademarks or
-trade name in a trademark sense to endorse or promote products or services of
-Licensee, or any third party.
-
-9. By copying, installing or otherwise using SIP, Licensee agrees to be bound
-by the terms and conditions of this License Agreement.
diff --git a/licenses/namd b/licenses/namd
deleted file mode 100644
index c1e9d54aa869..000000000000
--- a/licenses/namd
+++ /dev/null
@@ -1,144 +0,0 @@
-+--------------------------------------------------------------------+
-| |
-| University of Illinois |
-| NAMD Molecular Dynamics Software |
-| Non-Exclusive, Non-Commercial Use License |
-| |
-+--------------------------------------------------------------------+
-
-Upon execution of this Agreement by the party identified below ("Licensee"),
-The Board of Trustees of the University of Illinois ("Illinois"), on behalf
-of The Theoretical and Computational Biophysics Group ("TCBG") in the Beckman
-Institute, will provide the NAMD molecular dynamics software ("NAMD") in
-Executable Code and/or Source Code form ("Software") to Licensee, subject to
-the following terms and conditions. For purposes of this Agreement,
-Executable Code is the compiled code, which is ready to run on Licensee's
-computer. Source code consists of a set of files which contain the actual
-program commands that are compiled to form the Executable Code.
-
-1. The Software is intellectual property owned by Illinois, and all right,
-title and interest, including copyright, remain with Illinois. Illinois
-grants, and Licensee hereby accepts, a restricted, non-exclusive,
-non-transferable license to use the Software for academic, research and
-internal business purposes only, e.g. not for commercial use (see Clause 7
-below), without a fee.
-
-2. Licensee may, at its own expense, create and freely distribute
-complimentary works that interoperate with the Software, directing others to
-the TCBG server to license and obtain the Software itself. Licensee may, at
-its own expense, modify the Software to make derivative works. Except as
-explicitly provided below, this License shall apply to any derivative work
-as it does to the original Software distributed by Illinois. Any derivative
-work should be clearly marked and renamed to notify users that it is a
-modified version and not the original Software distributed by Illinois.
-Licensee agrees to reproduce the copyright notice and other proprietary
-markings on any derivative work and to include in the documentation of such
-work the acknowledgement:
-
-"This software includes code developed by the Theoretical and Computational
- Biophysics Group in the Beckman Institute for Advanced Science and
- Technology at the University of Illinois at Urbana-Champaign."
-
-Licensee may redistribute without restriction works with up to 1/2 of their
-non-comment source code derived from at most 1/10 of the non-comment source
-code developed by Illinois and contained in the Software, provided that the
-above directions for notice and acknowledgement are observed. Any other
-distribution of the Software or any derivative work requires a separate
-license with Illinois. Licensee may contact Illinois (namd@ks.uiuc.edu) to
-negotiate an appropriate license for such distribution.
-
-3. Except as expressly set forth in this Agreement, THIS SOFTWARE IS PROVIDED
-"AS IS" AND ILLINOIS MAKES NO REPRESENTATIONS AND EXTENDS NO WARRANTIES OF
-ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES
-OR MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE, OR THAT THE USE OF
-THE SOFTWARE WILL NOT INFRINGE ANY PATENT, TRADEMARK, OR OTHER RIGHTS.
-LICENSEE ASSUMES THE ENTIRE RISK AS TO THE RESULTS AND PERFORMANCE OF THE
-SOFTWARE AND/OR ASSOCIATED MATERIALS. LICENSEE AGREES THAT UNIVERSITY SHALL
-NOT BE HELD LIABLE FOR ANY DIRECT, INDIRECT, CONSEQUENTIAL, OR INCIDENTAL
-DAMAGES WITH RESPECT TO ANY CLAIM BY LICENSEE OR ANY THIRD PARTY ON ACCOUNT
-OF OR ARISING FROM THIS AGREEMENT OR USE OF THE SOFTWARE AND/OR ASSOCIATED
-MATERIALS.
-
-4. Licensee understands the Software is proprietary to Illinois. Licensee
-agrees to take all reasonable steps to insure that the Software is
-protected and secured from unauthorized disclosure, use, or release and
-will treat it with at least the same level of care as Licensee would use to
-protect and secure its own proprietary computer programs and/or information,
-but using no less than a reasonable standard of care. Licensee agrees to
-provide the Software only to any other person or entity who has registered
-with Illinois. If licensee is not registering as an individual but as an
-institution or corporation each member of the institution or corporation
-who has access to or uses Software must agree to and abide by the terms
-of this license. If Licensee becomes aware of any unauthorized licensing,
-copying or use of the Software, Licensee shall promptly notify Illinois
-in writing. Licensee expressly agrees to use the Software only in the
-manner and for the specific uses authorized in this Agreement.
-
-5. By using or copying this Software, Licensee agrees to abide by the
-copyright law and all other applicable laws of the U.S. including, but not
-limited to, export control laws and the terms of this license. Illinois
-shall have the right to terminate this license immediately by written
-notice upon Licensee's breach of, or non-compliance with, any
-terms of the license. Licensee may be held legally responsible for any
-copyright infringement that is caused or encouraged by its failure to
-abide by the terms of this license. Upon termination, Licensee agrees to
-destroy all copies of the Software in its possession and to verify such
-destruction in writing.
-
-6. The user agrees that any reports or published results obtained with
-the Software will acknowledge its use by the appropriate citation as
-follows:
-
-"NAMD was developed by the Theoretical and Computational Biophysics Group in
- the Beckman Institute for Advanced Science and Technology at the University
- of Illinois at Urbana-Champaign."
-
-Any published work which utilizes NAMD shall include the following reference:
-
-"Laxmikant Kale, Robert Skeel, Milind Bhandarkar, Robert Brunner,
- Attila Gursoy, Neal Krawetz, James Phillips, Aritomo Shinozaki,
- Krishnan Varadarajan, and Klaus Schulten. NAMD2: Greater scalability
- for parallel molecular dynamics. J. Comp. Phys., 151:283-312, 1999."
-
-Electronic documents will include a direct link to the official NAMD page
-at http://www.ks.uiuc.edu/Research/namd/
-
-7. Commercial use of the Software, or derivative works based thereon,
-REQUIRES A COMMERCIAL LICENSE. Should Licensee wish to make commercial
-use of the Software, Licensee will contact Illinois (namd@ks.uiuc.edu) to
-negotiate an appropriate license for such use. Commercial use includes:
-(1) integration of all or part of the Software into a product for sale,
-lease or license by or on behalf of Licensee to third parties, or
-(2) distribution of the Software to third parties that need it to
-commercialize product sold or licensed by or on behalf of Licensee.
-
-8. Government Rights. Because substantial governmental funds have been
-used in the development of NAMD, any possession, use or sublicense of the
-Software by or to the United States government shall be subject to such
-required restrictions.
-
-9. NAMD is being distributed as a research and teaching tool and as
-such, TCBG encourages contributions from users of the code that might, at
-Illinois' sole discretion, be used or incorporated to make the basic
-operating framework of the Software a more stable, flexible, and/or useful
-product. Licensees who contribute their code to become an internal
-portion of the Software agree that such code may be distributed by
-Illinois under the terms of this License and may be required to sign an
-"Agreement Regarding Contributory Code for NAMD Software" before Illinois
-can accept it (contact namd@ks.uiuc.edu for a copy).
-
-UNDERSTOOD AND AGREED.
-
-
-Contact Information:
-
-The best contact path for licensing issues is by e-mail to
-namd@ks.uiuc.edu or send correspondence to:
- NAMD Team
- Theoretical and Computational Biophysics Group
- Beckman Institute
- University of Illinois
- 405 North Mathews MC-251
- Urbana, Illinois 61801 USA
- FAX: (217) 244-6078
-
diff --git a/licenses/olivia b/licenses/olivia
deleted file mode 100644
index f8e85f490ef8..000000000000
--- a/licenses/olivia
+++ /dev/null
@@ -1,8 +0,0 @@
-Relating organizations and author have No liability for any loss of profits
-whatever arising from the use of this product. Permission to use and copy this
-software and its documentation is hereby granted.
-This software is free to be modified only for academic purpose and personal use.
-However, We do Not assume responsibility for any personally customized versions.
-
- Copyright (c) 2010 Olivia Developer Team, Hokkaido University.
-
diff --git a/licenses/procheck b/licenses/procheck
deleted file mode 100644
index 793379cc3cf8..000000000000
--- a/licenses/procheck
+++ /dev/null
@@ -1,230 +0,0 @@
-
-
- PROCHECK - Stereochemical Quality of Protein Structures
- -------------------------------------------------------
- and AQUA for PROCHECK-NMR
- -------------------------
-
- CONFIDENTIALITY AGREEMENT
- -------------------------
-
-
-
-In regard to the PROCHECK suite of programs, specified in Appendix 1
-herewith and the AQUA suite of programs specified in Appendix 2 herewith
-(the Software) supplied to us, the copyright and other intellectual
-property rights to which belong to the authors, we
-
- __________________________________________________________________
-
-undertake to the authors that we shall be bound by the following terms and
-conditions:-
-
-1. We will receive the Software and any related documentation in confidence
-and will not use the same except for the purpose of the department's own
-research. The Software will be used only by such of our officers or
-employees to whom it must reasonably be communicated to enable us to
-undertake our research and who agree to be bound by the same confidence.
-The department shall procure and enforce such agreement from its staff for
-the benefit of the authors.
-
-2. The publication of research using the Software must reference
-
- "Laskowski R A, MacArthur M W, Moss D S & Thornton J M (1993). PROCHECK:
- a program to check the stereochemical quality of protein
- structures. J. Appl. Cryst., 26, 283-291."
-
-and
-
- "Rullmann J A C (1996). AQUA, Computer Program, Department of NMR
- Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht
- University, The Netherlands."
-
-
-3. Research shall take place solely at the department's premises at
-
- __________________________________________________________________
-
-4. All forms of the Software will be kept in a reasonably secure place to
-prevent unauthorised access.
-
-5. Each copy of the Software or, if not practicable then, any package
-associated therewith shall be suitably marked (and such marking maintained)
-with the following copyright notice: " Copyright 1992 M W MacArthur, R A
-Laskowski, D S Moss, J A C Rullmann & J M Thornton All Rights Reserved".
-
-6. The Software may be modified but any changes made shall be made
-available to the authors.
-
-7. The Software shall be used exclusively for academic teaching and
-research. The Software will not be used for any commercial research or
-research associated with an industrial company.
-
-8. The confidentiality obligation in paragraph one shall not apply:
-
- (i) to information and data known to the department at the time of
- receipt hereunder (as evidenced by its written records);
-
- (ii) to information and data which was at the time of receipt in the
- public domain or thereafter becomes so through no wrongful act of
- the department;
-
- (iii) to information and data which the department receives from a third
- party not in breach of any obligation of confidentiality owed to
- the authors.
-
-
-
-Please sign this Undertaking and return a copy of it to indicate that you
-have read, understood and accepted the above terms.
-
-
-
- For and on behalf of _____________________________
-
- _________________________________________________
-
- ..................................................
-
- Dated ............................................
-
-
-
-
-APPENDIX 1 - DETAILS OF THE PROCHECK SUITE OF PROGRAMS PROVIDED (v.3.4.3)
----------------------------------------------------------------
-
-Files to be included
---------------------
-
- 1. anglen.f }
- 2. anglen.inc }
- 3. bplot.f }
- 4. bplot.inc }
- 5. brkcln.par }
- 6. clean.f }
- 7. gfac2pdb.f }
- 8. gfac2pdb.inc }
- 9. mplot.f }
- 10. mplot.inc } Source program files
- 11. nb.c }
- 12. pplot.f }
- 13. pplot.inc }
- 14. ps.f }
- 15. rmsdev.f }
- 16. rmsdev.inc }
- 17. secstr.f }
- 18. sstruc.par }
- 19. tplot.f }
- 20. tplot.inc }
- 21. viol2pdb.f }
- 22. viol2pdb.inc }
- 23. vplot.f }
- 24. vplot.inc }
- 25. gfac2pdb.scr }
- 26. procheck.com }
- 27. procheck.scr }
- 28. procheck_comp.com }
- 29. procheck_comp.scr }
- 30. procheck_nmr.scr }
- 31. proplot.com }
- 32. proplot.scr } Script files
- 33. proplot_comp.scr }
- 34. proplot_nmr.scr }
- 35. proplot_comp.com }
- 36. prosub.com }
- 37. setup.com }
- 38. setup.scr }
- 39. viol2pdb.scr }
- 40. convax.for }
- 41. procomp.com } Installation files
- 42. procomp.scr }
- 43. maninst.ps }
- 44. manual.tar.Z } Documentation files
- 45. nmr_manual.tar.Z }
- 46. procheck.dat }
- 47. procheck.prm } Data
- 48. procheck_comp.prm } files
- 49. procheck_nmr.prm }
-
-
-APPENDIX 2 - DETAILS OF THE AQUA SUITE OF PROGRAMS PROVIDED (v.0.40)
------------------------------------------------------------
-
-Files to be included
---------------------
-
-Source files:-
-------------
-
-AquaCalc.c AquaCalc.h
- AquaData.h
-AquaDist.c AquaDist.h
-AquaFiles.c AquaFiles.h
-AquaFuncts.c AquaFuncts.h
-AquaFuncts_biosym.c AquaFuncts_biosym.h
-AquaFuncts_cv.c AquaFuncts_cv.h
-AquaFuncts_io.c AquaFuncts_io.h
-AquaFuncts_pdb.c AquaFuncts_pdb.h
-AquaFuncts_pdbmr.c AquaFuncts_pdbmr.h
-AquaHow.c AquaHow.h
- AquaMacros.h
-AquaPseudo.c AquaPseudo.h
-AquaStrucset.c AquaStrucset.h
- AquaTypes.h
-AquaWhat.c AquaWhat.h
-Qext.c Qext.h
-Range.c Range.h
- cv_subs.h
-
-Script files:-
-------------
-ReadNrv.pm* convDIANAtorsrestr qdbext*
-aqdrst* convDISGEOdistrestr qguessc*
-aqpc* convDISGEOtorsrestr qguessr*
-aqpcsel convMRTABLE qhelp*
-aquanal.pl* convXPLORdistrestr qmodr*
-clean0* convXPLORtorsrestr qsplitr*
-convBIOSYMdistrestr makecmm* qsumm*
-convBIOSYMtorsrestr qconvert* qsumm_aux1*
-convDIANAdistrestr qconvr* qsumm_aux2*
-
-Documentation:-
--------------
-README models.txt qconvr.txt
-aqpc.txt mr.txt qdbext.txt
-aqua_setup.txt names.txt qext.txt
-biosym.txt overview.txt qhelp.txt
-chains.txt perl.txt qsumm.txt
-conversion.txt procheck.txt restraint_format.txt
-dbas.txt qanal.txt setup.txt
-intro.txt qclean.txt torsion.txt
-log.txt qconvert.txt xplor.txt
-
-Extras:-
-------
-joinpdb* splitpdb*
-
-
-
-Please complete the above form, sign it, and then send or fax to:-
-
-
-Roman Laskowski
-European Bioinformatics Institute,
-Wellcome Trust Genome Campus,
-Hinxton,
-Cambridge, CB10 1SD,
-United Kingdom
-
-Fax:- +44 (0)1223 494 468
-
-If you have any problems either installing the software or running it,
-please e-mail your problems to:-
-
- roman@ebi.ac.uk
-
-Questions about AQUA should be directed to Ton Rullmann at
-
- rull@nmr.chem.ruu.nl
-