diff options
Diffstat (limited to 'dev-haskell/biocore')
| -rw-r--r-- | dev-haskell/biocore/Manifest | 4 | ||||
| -rw-r--r-- | dev-haskell/biocore/biocore-0.3.1.ebuild | 29 | ||||
| -rw-r--r-- | dev-haskell/biocore/files/biocore-0.3.1-ghc84.patch | 28 | ||||
| -rw-r--r-- | dev-haskell/biocore/metadata.xml | 14 |
4 files changed, 0 insertions, 75 deletions
diff --git a/dev-haskell/biocore/Manifest b/dev-haskell/biocore/Manifest deleted file mode 100644 index d0575add9e3a..000000000000 --- a/dev-haskell/biocore/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -AUX biocore-0.3.1-ghc84.patch 931 BLAKE2B 83d3c8d5ddf8b83dcd21f0e9e150811f17df0ceeab74d9760958b09493343b252cd42f2ecc3a1cca63a982fd2d0cbfc1d442d3c22c11add831f4a9e2ab35406b SHA512 deae76513ea24354bace0875db6ec4924f0fafccd45fb6dbc7217bed1002b863ddc45d62697946ab943b2550600f5d0ca398850514515f49da2729c795ac38a7 -DIST biocore-0.3.1.tar.gz 2812 BLAKE2B ff94cbbb37c7f74c7d08e31a626336d4db621c468dd42df43ba20739224378b1ecd358e74111174eea6a30450e50091245490606da39781d92e905cb1e875db6 SHA512 0a9a3690aa0888c688c8429facd0a26ac94f639222568d2e68a0640714098a40fa38d196800900486d12b36ee735576519d98e4d45f0320261d3f5de9ab09311 -EBUILD biocore-0.3.1.ebuild 622 BLAKE2B 2d6e6d2294366ef633a30e23b152021ddaeff9ff44d36100e42a5511de27437494a52dead3669fa13940e357fde64574cf3f464b8336730731a8e84bd5314171 SHA512 baa26eb26a9111fb514c34f5597c6ec0157f9ea01bcb3c9ceaeb4621c803687e92091a577b22c2a5a8483548d6000f9ef0f6b15a5682465ad5d791833b518c18 -MISC metadata.xml 514 BLAKE2B 7a6557f268e6a704ba0de907d8c2f3e64c4c04a630133718bf989c6641d5b7543848d485fe0fff31912f8b6b8e9b709f9871207878e4210819421b5bfd3f5e4b SHA512 770b0d92d0845979ac6682a1ef936e64d347e08c9954db446a4624caa6acbaa7088f5aac2885f7c07320951cfdd170d8f46ebe06db7fee19216ae2b737857433 diff --git a/dev-haskell/biocore/biocore-0.3.1.ebuild b/dev-haskell/biocore/biocore-0.3.1.ebuild deleted file mode 100644 index 41e81668702e..000000000000 --- a/dev-haskell/biocore/biocore-0.3.1.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -# ebuild generated by hackport 0.3.3.9999 - -CABAL_FEATURES="lib profile haddock hoogle hscolour" -inherit haskell-cabal - -DESCRIPTION="A bioinformatics library" -HOMEPAGE="https://hackage.haskell.org/package/biocore" -SRC_URI="https://hackage.haskell.org/package/${P}/${P}.tar.gz" - -LICENSE="LGPL-2.1" -SLOT="0/${PV}" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="dev-haskell/stringable:=[profile?] - >=dev-lang/ghc-6.10.4:= -" -DEPEND="${RDEPEND} - >=dev-haskell/cabal-1.6.0.3 -" - -PATCHES=( - "${FILESDIR}"/${P}-ghc84.patch -) diff --git a/dev-haskell/biocore/files/biocore-0.3.1-ghc84.patch b/dev-haskell/biocore/files/biocore-0.3.1-ghc84.patch deleted file mode 100644 index b0a404eb8b46..000000000000 --- a/dev-haskell/biocore/files/biocore-0.3.1-ghc84.patch +++ /dev/null @@ -1,28 +0,0 @@ ---- a/src/Bio/Core/Sequence.hs -+++ b/src/Bio/Core/Sequence.hs -@@ -37,2 +37,3 @@ import Data.Stringable hiding (length) - import Data.Monoid -+import qualified Data.Semigroup as S - -@@ -42,2 +43,5 @@ newtype SeqData = SeqData { unSD :: LC.ByteString } - -+instance S.Semigroup SeqData where -+ (<>) (SeqData s1) (SeqData s2) = SeqData (mappend s1 s2) -+ - instance Monoid SeqData where -@@ -51,2 +55,9 @@ newtype SeqLabel = SeqLabel { unSL :: LC.ByteString } - -+instance S.Semigroup SeqLabel where -+ (<>) (SeqLabel s1) (SeqLabel s2) = let -+ (i1:r1) = LC.words s1 -+ (i2:r2) = LC.words s2 -+ sid = mconcat [i1,(LC.pack ":"),i2] -+ in SeqLabel (LC.unwords ([sid]++r1++[LC.pack ":"]++r2)) -+ - instance Monoid SeqLabel where -@@ -68,2 +79,5 @@ newtype QualData = QualData { unQD :: L.ByteString } - -+instance S.Semigroup QualData where -+ (<>) (QualData s1) (QualData s2) = QualData (mappend s1 s2) -+ - instance Monoid QualData where diff --git a/dev-haskell/biocore/metadata.xml b/dev-haskell/biocore/metadata.xml deleted file mode 100644 index 6fe4dd9247b7..000000000000 --- a/dev-haskell/biocore/metadata.xml +++ /dev/null @@ -1,14 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>haskell@gentoo.org</email> - <name>Gentoo Haskell</name> - </maintainer> - <longdescription> - A set of core definitions and data structures - commonly used in bioinformatics. The intention is that bioinformatics - libraries will use this as a common ground to avoid needless incompatibilities - and duplicated work. - </longdescription> -</pkgmetadata> |