diff options
author | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
---|---|---|
committer | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
commit | 4f2d7949f03e1c198bc888f2d05f421d35c57e21 (patch) | |
tree | ba5f07bf3f9d22d82e54a462313f5d244036c768 /sys-cluster/openmpi |
reinit the tree, so we can have metadata
Diffstat (limited to 'sys-cluster/openmpi')
-rw-r--r-- | sys-cluster/openmpi/Manifest | 27 | ||||
-rw-r--r-- | sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch | 42 | ||||
-rw-r--r-- | sys-cluster/openmpi/files/openmpi-ltdl.patch | 78 | ||||
-rw-r--r-- | sys-cluster/openmpi/metadata.xml | 22 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-1.10.7.ebuild | 195 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-1.4.3.ebuild | 101 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-1.4.5.ebuild | 103 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-1.6.5-r1.ebuild | 170 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-1.7.5-r1.ebuild | 166 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-1.8.4-r4.ebuild | 169 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-1.8.7-r1.ebuild | 182 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-1.8.8.ebuild | 182 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-2.0.2.ebuild | 175 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-2.0.3.ebuild | 175 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-2.1.2.ebuild | 174 |
15 files changed, 1961 insertions, 0 deletions
diff --git a/sys-cluster/openmpi/Manifest b/sys-cluster/openmpi/Manifest new file mode 100644 index 000000000000..3a4c3ca8ba78 --- /dev/null +++ b/sys-cluster/openmpi/Manifest @@ -0,0 +1,27 @@ +AUX hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch 1602 SHA256 551d0aaab2d83bdb9d128fc1bdcbcc0bb4a9b8775defa5d9b4b065151ac1154b SHA512 7732a53f6074432a10bbe7dcca6b64e45bebadb797c214fca9c93d2ec5fd179832f69374c38d2bba5932089fcae6a7045990a1c7bbb048c3b5ab1397e9596c74 WHIRLPOOL 8aba8593a683b1f564a6aa2c4c3d76e1e0a48491c90faa447ce2505555ca74930adb46a5c374011f48d240f925b8f14afba19db9201179ec1df642ba7d1f4528 +AUX openmpi-ltdl.patch 2449 SHA256 e373af4671a3056776fe53a3a12d28641aa8e5a4b400d23f5840deaccc865992 SHA512 4487ecbd2025d561f5ac46c70da5e407f6f201b7588f350d1211790dceb64ec2acdf3ca8f90e2ecbe8a6f7c3a6577e77fb7ae22be0ff3dd4adbded9035a7b6c9 WHIRLPOOL 34712f50ec93e781e2f03d23527a719132b6257f862eb50d7fc20e8186f948fc8dc624e76a9517caab5f7c9d2d794c889def4aff8f0d9c333e3963de17c26e2f +DIST openmpi-1.10.7.tar.bz2 13435131 SHA256 a089ece151fec974905caa35b0a59039b227bdea4e7933069e94bee4ed0e5a90 SHA512 9c5470f9959ca37650a59e56fb8343c028422c709876ab9d25a411dd09a07cdde927c45d8f3db1ad524b1f2847fe799471d469fa1efee48f8018b2ff24427ecb WHIRLPOOL 4ba8c403ac20d5f6db2a4648f35606583b6a38666d65793e726496b99d60179a7a3684874d2ea6e428e301a266fd93db7e4300155bf199eabed77c98ef6438be +DIST openmpi-1.4.3.tar.bz2 6626909 SHA256 220b72b1c7ee35469ff74b4cfdbec457158ac6894635143a33e9178aa3981015 SHA512 c33d5e019ba0b080aa34ecfa085182349da806e4bff26c1bf4dbdc8fb3f8f3c38899b9d96d671e1ae337b523ac9d634ae25c49d9af6eef2bc340c29dba75b1b8 WHIRLPOOL 92349d7bd16ff6e8563df602c215ce98ce5624b38a2975c13832d5b9504691c844206acad4c45376fe53e0116fe591782a3e5f8a132c4ac18ae793470d57db55 +DIST openmpi-1.4.5.tar.bz2 6643760 SHA256 a3857bc69b7d5258cf7fc1ed1581d9ac69110f5c17976b949cb7ec789aae462d SHA512 f89922345cde8978483e397e9016103626db3f1787f9afccaf0f60d59caa2a4409b47b01ac221d60e24e241f2afecb636ca89688bf326dc0ca5c817de96b3e99 WHIRLPOOL 2008bd952f9cc93ead6508267f5a45ee6d9ebf9136e35e25b798400d162173514da73349518bfada4777471c32d315e8556bbee8847a5268719d6b32fd0fd811 +DIST openmpi-1.6.5.tar.bz2 10943881 SHA256 fe37bab89b5ef234e0ac82dc798282c2ab08900bf564a1ec27239d3f1ad1fc85 SHA512 b0ede0264cd9263b8ba59ec51d17ad47b5f20d49d219ca05f7c396d608398d517b2023a46a2535fd6191160d709e4805c4de436dcfee56eda287383bd69f9652 WHIRLPOOL d0288677827c1deba17295ee1b69cd21da294ac314cc49404389b4c286384f9f2f229cae4c4fd62511e7f20abc510998642d6a2edfac3f16f83078f474f8e735 +DIST openmpi-1.7.5.tar.bz2 13286694 SHA256 cb3eef6880537d341d5d098511d390ec853716a6ec94007c03a0d1491b2ac8f2 SHA512 72de2788fa26615a2e7373b5f32e0a2b9e39d56094c45b49348ef19bbb0ea306734b7d3275d76471a18628b5244d882de4ed3595eb46f13683e1c8d2b277f065 WHIRLPOOL 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SHA512 cbd64eaa022ca3861166ceb5a12b0d113d88c9cf4381c5f4eb9e1ca9c0b0006c2457e7639a2cabdd8118518f313bded89d80eb0b2ccd9a91dbb29018a3dd9efd WHIRLPOOL 020bbf9982fd789387988193181217a210f4a5092e5e136c154120b6cc9322e1d7571d9a1a387d7c21cab1358b010e20cd80d5dde217b44c5f751da8dce0d561 +EBUILD openmpi-1.4.5.ebuild 2580 SHA256 87522c0729e34797f5f84685751ada19f8f21ee93603bba74f204df9436cd564 SHA512 a8b3f8628aa6f8379b959d2c3ea7ad4e8d9edf7c1e5a41e54e42959f831b53355a3dd0590a72e389f3864dcecafbc62f4b4cee03fe475455900e881598a290a1 WHIRLPOOL c31a122e2d2407962b39f4f2edde2622de0ab88a0d3e0b678b8003f36b1ab315c1f8e8fdf4a37966d04cd4dc4e03fad0763d02b5bc8b4962793e11d828e33479 +EBUILD openmpi-1.6.5-r1.ebuild 5294 SHA256 8b5aff80d3313970602ba4d6bec90aabd5297d7270e95a27e085406bf053fb63 SHA512 9598d7407d6af3fa0c726aebc087731fa612590127da79fe559a151fd339991fd955c2825538dcfbc0ef255efba47952cbfe7af591e629c590a31c73443390f6 WHIRLPOOL 206459dfdbb9552e68cc6e16a68b82e4d53d8942913ab4090eafd5c9b4f85bbd260393b71efd17e6838c6bcd2c7ad7dc3ec7657062d9c70a9294ad67afee13bf +EBUILD openmpi-1.7.5-r1.ebuild 4989 SHA256 58b2eb1c9d052782e4f409be1fd29449e144728065a04077c2339a6e3a6cb34a SHA512 b69c89d38fed3d7345a12d783f8ef553cc1156e2f8058d990c8a866155a8aeca76b93a514f9980099dc378fdc49752392854d4c432af6cc17fc38e72cb2a7ae8 WHIRLPOOL a56555ae9349fc6dd3eb46033e9093d2fa9629a79eb40d5c28190f0faba52853861ca88cb101242f6c4b9ef8375a6b31859eac997e1f1f74564d6d429491cd0f +EBUILD openmpi-1.8.4-r4.ebuild 5032 SHA256 437c5f61eb00831f551e31af2f1044efe00b8272d8f229f2a132edc6cd18e1a9 SHA512 2ebcedba5301d5e70b6c91f958ff902b83ab977187aec96956d468499880788851fe36996a04245c559a6c3eea447467620ac040e3d944c12ba18444c7fca634 WHIRLPOOL 1c15a03ff5555d4a586fe4ded93e9e49dc8a3f79bcea6679531a8d83a5ccfc6d028b9419e9ad52034afd77c9958eb2b06d8060d6947a0bff1dc507dc7750b407 +EBUILD openmpi-1.8.7-r1.ebuild 5544 SHA256 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f9dfbb1f4311f40d39bcbfebbe32152036d7a776611e151ada0806127fd5e6ef9e2da645782da08869e248a5dcd2cf789c39bd3e19f2131a6eb35c1849f28cef WHIRLPOOL 4aa0606aab2800e4f1a8f3110331d9bafa5077a57d1863b2d02e73cc5232f33a3518155dedbf2b5566d247cb1043a033eaad57fd47575b95c7f1183f343f3056 +MISC ChangeLog-2015 22605 SHA256 98728cdd98b01ef2bfddb2ab3e29c3593f561957385158cecff415a6ed440e9b SHA512 bdaec10229fb19b70c9c3bf601e40cc2d8796889b640a158a49e8db7304f1709c1532a22357ee78969bd5e96d0bba887fb56e9f5a3594d6e2d83eb56149a9277 WHIRLPOOL bfa30e308a856dd5673f69e053ce3608c6f64f3e0307a88f8764df98fcdad3921dc703806ccc47dcf3001645a989de32a5499dbf7369ae39171f62b833baa715 +MISC metadata.xml 901 SHA256 4dd4e2cb3cd8c47d97ddd98a966181d3eb968683fb6621f303b0178ee3702e96 SHA512 6f30f50d2f2173a01e7ef0d4b808352be98b64945b6af1f05cfaa28024f6efccad28984fe0ad31094f8822c5e251c1270765d5905c7737e1b84302143fe4ac09 WHIRLPOOL 0d39eb4ea06fc52023043732c1397ec778c8e033726aea1f6b3b9735722e02ca6b095cfb042c1ffcda36b3544a8559a584735adb2e8bab39fe2e53f3b30b43c2 diff --git a/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch b/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch new file mode 100644 index 000000000000..197430aee6f2 --- /dev/null +++ b/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch @@ -0,0 +1,42 @@ +From 3bd5897c7ca8ab61fb024957aeae891e204b3e3f Mon Sep 17 00:00:00 2001 +From: Justin Bronder <jsbronder@gmail.com> +Date: Mon, 1 Jul 2013 20:37:17 -0400 +Subject: [PATCH] hooks: disable malloc override inside of Gentoo sandbox + +As described in the comments in the source, Gentoo's own version of +fakeroot, sandbox, also runs into hangs when malloc is overridden. +Sandbox environments can easily be detected by looking for SANDBOX_PID +in the environment. When detected, employ the same fix used for +fakeroot. + +See https://bugs.gentoo.org/show_bug.cgi?id=462602 +--- + opal/mca/memory/linux/hooks.c | 11 +++++++++-- + 1 file changed, 9 insertions(+), 2 deletions(-) + +diff --git a/opal/mca/memory/linux/hooks.c b/opal/mca/memory/linux/hooks.c +index 6a1646f..5ded08c 100644 +--- a/opal/mca/memory/linux/hooks.c ++++ b/opal/mca/memory/linux/hooks.c +@@ -747,9 +747,16 @@ static void opal_memory_linux_malloc_init_hook(void) + "fakeroot" build environment that allocates memory during + stat() (see http://bugs.debian.org/531522). It may not be + necessary any more since we're using access(), not stat(). But +- we'll leave the check, anyway. */ ++ we'll leave the check, anyway. ++ ++ This is also an issue when using Gentoo's version of 'fakeroot', ++ sandbox v2.5. Sandbox environments can also be detected fairly ++ easily by looking for SANDBOX_ON. ++ */ ++ + if (getenv("FAKEROOTKEY") != NULL || +- getenv("FAKED_MODE") != NULL) { ++ getenv("FAKED_MODE") != NULL || ++ getenv("SANDBOX_ON") != NULL ) { + return; + } + +-- +1.8.1.5 + diff --git a/sys-cluster/openmpi/files/openmpi-ltdl.patch b/sys-cluster/openmpi/files/openmpi-ltdl.patch new file mode 100644 index 000000000000..a288ea272473 --- /dev/null +++ b/sys-cluster/openmpi/files/openmpi-ltdl.patch @@ -0,0 +1,78 @@ +diff -up openmpi-1.6.3/ompi/debuggers/dlopen_test.c.ltdl openmpi-1.6.3/ompi/debuggers/dlopen_test.c +--- openmpi-1.6.3/ompi/debuggers/dlopen_test.c.ltdl 2012-04-03 08:30:25.000000000 -0600 ++++ openmpi-1.6.3/ompi/debuggers/dlopen_test.c 2012-11-02 14:50:12.613702426 -0600 +@@ -13,7 +13,17 @@ + #include <string.h> + #include <stdlib.h> + +-#include "opal/libltdl/ltdl.h" ++#if OPAL_WANT_LIBLTDL ++ #ifndef __WINDOWS__ ++ #if OPAL_LIBLTDL_INTERNAL ++ #include "opal/libltdl/ltdl.h" ++ #else ++ #include "ltdl.h" ++ #endif ++ #else ++ #include "ltdl.h" ++ #endif ++#endif + + static int do_test(void); + +diff -up openmpi-1.6.3/ompi/debuggers/Makefile.am.ltdl openmpi-1.6.3/ompi/debuggers/Makefile.am +--- openmpi-1.6.3/ompi/debuggers/Makefile.am.ltdl 2012-04-03 08:30:25.000000000 -0600 ++++ openmpi-1.6.3/ompi/debuggers/Makefile.am 2012-11-02 15:04:53.636926260 -0600 +@@ -47,7 +47,7 @@ headers = \ + + dlopen_test_SOURCES = dlopen_test.c + dlopen_test_CPPFLAGS = -I$(top_srcdir)/opal/libltdl +-dlopen_test_LDADD = $(top_builddir)/opal/libltdl/libltdlc.la ++dlopen_test_LDADD = $(LIBLTDL) + + predefined_gap_test_SOURCES = predefined_gap_test.c + predefined_gap_test_LDFLAGS = $(WRAPPER_EXTRA_LDFLAGS) +diff -up openmpi-1.6.3/test/support/components.c.ltdl openmpi-1.6.3/test/support/components.c +--- openmpi-1.6.3/test/support/components.c.ltdl 2012-04-03 08:29:44.000000000 -0600 ++++ openmpi-1.6.3/test/support/components.c 2012-11-02 14:50:29.204705380 -0600 +@@ -24,7 +24,17 @@ + + #include "opal/constants.h" + #include "opal/mca/mca.h" +-#include "opal/libltdl/ltdl.h" ++#if OPAL_WANT_LIBLTDL ++ #ifndef __WINDOWS__ ++ #if OPAL_LIBLTDL_INTERNAL ++ #include "opal/libltdl/ltdl.h" ++ #else ++ #include "ltdl.h" ++ #endif ++ #else ++ #include "ltdl.h" ++ #endif ++#endif + + #include "components.h" + +diff -up openmpi-1.6.3/test/support/components.h.ltdl openmpi-1.6.3/test/support/components.h +--- openmpi-1.6.3/test/support/components.h.ltdl 2012-04-03 08:29:44.000000000 -0600 ++++ openmpi-1.6.3/test/support/components.h 2012-11-02 14:50:22.409703519 -0600 +@@ -20,7 +20,17 @@ + #ifndef OMPI_SUPPORT_COMPONENTS_H + #define OMPI_SUPPORT_COMPONENTS_H + +-#include "opal/libltdl/ltdl.h" ++#if OPAL_WANT_LIBLTDL ++ #ifndef __WINDOWS__ ++ #if OPAL_LIBLTDL_INTERNAL ++ #include "opal/libltdl/ltdl.h" ++ #else ++ #include "ltdl.h" ++ #endif ++ #else ++ #include "ltdl.h" ++ #endif ++#endif + #include "opal/mca/mca.h" + + BEGIN_C_DECLS diff --git a/sys-cluster/openmpi/metadata.xml b/sys-cluster/openmpi/metadata.xml new file mode 100644 index 000000000000..d909acfe0a0a --- /dev/null +++ b/sys-cluster/openmpi/metadata.xml @@ -0,0 +1,22 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>jsbronder@gentoo.org</email> + </maintainer> + <maintainer type="project"> + <email>cluster@gentoo.org</email> + <name>Gentoo Cluster Project</name> + </maintainer> + <use> + <flag name="cma">Enable the CMA (Cross Memory Attach) MCA</flag> + <flag name="cuda">Add GPU direct support</flag> + <flag name="heterogeneous">Enable features required for heterogeneous + platform support</flag> + <flag name="romio">Build the ROMIO MPI-IO component</flag> + <flag name="mpi-threads">Enable MPI_THREAD_MULTIPLE</flag> + <flag name="numa">Enable numactl to allow binding processes to CPUs</flag> + <flag name="vt">Enable bundled VampirTrace support</flag> + <flag name="pbs">Add support for the Portable Batch System (PBS)</flag> + </use> +</pkgmetadata> diff --git a/sys-cluster/openmpi/openmpi-1.10.7.ebuild b/sys-cluster/openmpi/openmpi-1.10.7.ebuild new file mode 100644 index 000000000000..b5f0b4edbf30 --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.10.7.ebuild @@ -0,0 +1,195 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +FORTRAN_NEEDED=fortran + +inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl + openmpi_ofed_features_failover" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads vt + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" + +MPI_UNCLASSED_DEP_STR=" + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + )" + +# dev-util/nvidia-cuda-toolkit is always multilib +CDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/nullmpi + !sys-cluster/mpiexec + >=dev-libs/libevent-2.0.21[${MULTILIB_USEDEP}] + dev-libs/libltdl:0[${MULTILIB_USEDEP}] + >=sys-apps/hwloc-1.10.0-r2[${MULTILIB_USEDEP},numa?] + >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] + cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* )" + +RDEPEND="${CDEPEND} + java? ( >=virtual/jre-1.6 )" + +DEPEND="${CDEPEND} + java? ( >=virtual/jdk-1.6 )" + +MULTILIB_WRAPPED_HEADERS=( + /usr/include/mpi.h + /usr/include/openmpi/ompi/mpi/java/mpiJava.h +) + +pkg_setup() { + fortran-2_pkg_setup + java-pkg-opt-2_pkg_setup + + if use mpi-threads; then + ewarn + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + ewarn + fi + + elog + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + elog +} + +src_prepare() { + default + + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf || die + fi +} + +multilib_src_configure() { + if use java; then + # We must always build with the right -source and -target + # flags. Passing flags to javac isn't explicitly supported here + # but we can cheat by overriding the configure test for javac. + export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" + fi + + ECONF_SOURCE=${S} econf \ + --sysconfdir="${EPREFIX}/etc/${PN}" \ + --enable-pretty-print-stacktrace \ + --enable-orterun-prefix-by-default \ + --with-hwloc="${EPREFIX}/usr" \ + --with-libltdl="${EPREFIX}/usr" \ + --enable-mpi-fortran=$(usex fortran all no) \ + $(usex !vt --enable-contrib-no-build=vt "") \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(multilib_native_use_enable java) \ + $(multilib_native_use_enable java mpi-java) \ + $(multilib_native_use_enable mpi-threads mpi-thread-multiple) \ + $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(multilib_native_use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ + $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(multilib_native_use_enable openmpi_ofed_features_failover btl-openib-failover) \ + $(multilib_native_use_with openmpi_rm_pbs tm) \ + $(multilib_native_use_with openmpi_rm_slurm slurm) +} + +multilib_src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} + +multilib_src_install() { + default + + # fortran header cannot be wrapped (bug #540508), workaround part 1 + if multilib_is_native_abi && use fortran; then + mkdir "${T}"/fortran || die + mv "${ED}"usr/include/mpif* "${T}"/fortran || die + else + # some fortran files get installed unconditionally + rm "${ED}"usr/include/mpif* "${ED}"usr/bin/mpif* || die + fi +} + +multilib_src_install_all() { + # From USE=vt see #359917 + rm -rf "${ED}"usr/share/libtool &> /dev/null || die + + # fortran header cannot be wrapped (bug #540508), workaround part 2 + if use fortran; then + mv "${T}"/fortran/mpif* "${ED}"usr/include || die + fi + + # Avoid collisions with libevent + rm -rf "${ED}"usr/include/event2 &> /dev/null || die + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}" -name '*.la' -delete || die + + if use java; then + local mpi_jar="${ED}"usr/$(get_libdir)/mpi.jar + java-pkg_dojar "${mpi_jar}" + # We don't want to install the jar file twice + # so let's clean after ourselves. + rm "${mpi_jar}" || die + fi + + einstalldocs +} diff --git a/sys-cluster/openmpi/openmpi-1.4.3.ebuild b/sys-cluster/openmpi/openmpi-1.4.3.ebuild new file mode 100644 index 000000000000..4b8de0f2d9e8 --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.4.3.ebuild @@ -0,0 +1,101 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit eutils fortran-2 multilib flag-o-matic toolchain-funcs + +MY_P=${P/-mpi} + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v1.4/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +RESTRICT="mpi-threads? ( test )" +KEYWORDS="alpha amd64 ia64 ppc ppc64 sparc x86 ~x86-fbsd" +IUSE="+cxx elibc_FreeBSD fortran heterogeneous ipv6 mpi-threads pbs romio threads vt" +RDEPEND=" + pbs? ( sys-cluster/torque ) + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec" +DEPEND="${RDEPEND}" + +S=${WORKDIR}/${MY_P} + +pkg_setup() { + fortran-2_pkg_setup + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --without-slurm) + + if use mpi-threads; then + myconf+=(--enable-mpi-threads + --enable-progress-threads) + fi + + if use fortran; then + if [[ $(tc-getFC) =~ g77 ]]; then + myconf+=(--disable-mpi-f90) + elif [[ $(tc-getFC) =~ if ]]; then + # Enabled here as gfortran compile times are huge with this enabled. + myconf+=(--with-mpi-f90-size=medium) + fi + else + myconf+=(--disable-mpi-f90 --disable-mpi-f77) + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_with pbs tm) \ + $(use_enable ipv6) +} + +src_install () { + emake DESTDIR="${D}" install || die "make install failed" + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check || die "emake check failed" +} diff --git a/sys-cluster/openmpi/openmpi-1.4.5.ebuild b/sys-cluster/openmpi/openmpi-1.4.5.ebuild new file mode 100644 index 000000000000..a810a5a3e3ce --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.4.5.ebuild @@ -0,0 +1,103 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit eutils fortran-2 multilib flag-o-matic toolchain-funcs + +MY_P=${P/-mpi} + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v1.4/downloads/${MY_P}.tar.bz2" + +LICENSE="BSD" +SLOT="0" +RESTRICT="mpi-threads? ( test )" + +KEYWORDS="~alpha ~amd64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd" +IUSE="+cxx elibc_FreeBSD fortran heterogeneous ipv6 mpi-threads pbs romio threads vt" +RDEPEND=" + pbs? ( sys-cluster/torque ) + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec" +DEPEND="${RDEPEND}" + +S=${WORKDIR}/${MY_P} + +pkg_setup() { + fortran-2_pkg_setup + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --without-slurm) + + if use mpi-threads; then + myconf+=(--enable-mpi-threads + --enable-progress-threads) + fi + + if use fortran; then + if [[ $(tc-getFC) =~ g77 ]]; then + myconf+=(--disable-mpi-f90) + elif [[ $(tc-getFC) =~ if ]]; then + # Enabled here as gfortran compile times are huge with this enabled. + myconf+=(--with-mpi-f90-size=medium) + fi + else + myconf+=(--disable-mpi-f90 --disable-mpi-f77) + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_with pbs tm) \ + $(use_enable ipv6) +} + +src_install () { + emake DESTDIR="${D}" install || die "make install failed" + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check || die "emake check failed" +} diff --git a/sys-cluster/openmpi/openmpi-1.6.5-r1.ebuild b/sys-cluster/openmpi/openmpi-1.6.5-r1.ebuild new file mode 100644 index 000000000000..51c493411e17 --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.6.5-r1.ebuild @@ -0,0 +1,170 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit autotools eutils fortran-2 multilib flag-o-matic toolchain-funcs versionator + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_dapl + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_open-mx + openmpi_fabrics_psm + openmpi_fabrics_sctp" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl + openmpi_ofed_features_failover + " + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="+cxx elibc_FreeBSD fortran heterogeneous ipv6 mpi-threads romio threads vt + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" + +RDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec + >=sys-apps/hwloc-1.3 + dev-libs/libltdl:0 + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_dapl? ( sys-fabric/dapl ) + openmpi_fabrics_ofed? ( sys-fabric/ofed ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_open-mx? ( sys-cluster/open-mx ) + openmpi_fabrics_psm? ( sys-fabric/infinipath-psm ) + openmpi_fabrics_sctp? ( net-misc/lksctp-tools ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm ) + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + ) + " +DEPEND="${RDEPEND}" +# TODO: Newer releases of Vampir use otf2 which would resolve the above blockers. + +pkg_setup() { + fortran-2_pkg_setup + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo + +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi + + # https://svn.open-mpi.org/trac/ompi/ticket/3649 + # https://svn.open-mpi.org/trac/ompi/ticket/3648 + epatch "${FILESDIR}"/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch + + # https://github.com/open-mpi/ompi/issues/163 + epatch "${FILESDIR}"/openmpi-ltdl.patch + + AT_M4DIR="config opal/config orte/config ompi/config" eautoreconf +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --with-hwloc="${EPREFIX}/usr" + --with-libltdl=external + ) + + if use mpi-threads; then + myconf+=( + --enable-mpi-thread-multiple + --enable-opal-multi-threads + ) + fi + + if use fortran; then + if [[ $(tc-getFC) =~ g77 ]]; then + myconf+=(--disable-mpi-f90) + elif [[ $(tc-getFC) =~ if ]]; then + # Enabled here as gfortran compile times are huge with this enabled. + myconf+=(--with-mpi-f90-size=medium) + fi + else + myconf+=(--disable-mpi-f90 --disable-mpi-f77) + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(use_with openmpi_fabrics_dapl udapl "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_ofed openib "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(use_enable openmpi_ofed_features_failover btl-openib-failover) \ + $(use_with openmpi_fabrics_sctp sctp) \ + $(use_with openmpi_rm_pbs tm) \ + $(use_with openmpi_rm_slurm slurm) +} + +src_install () { + emake DESTDIR="${D}" install || die "make install failed" + # From USE=vt see #359917 + rm "${ED}"/usr/share/libtool &> /dev/null + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check || die "emake check failed" +} diff --git a/sys-cluster/openmpi/openmpi-1.7.5-r1.ebuild b/sys-cluster/openmpi/openmpi-1.7.5-r1.ebuild new file mode 100644 index 000000000000..ad59007d9d7b --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.7.5-r1.ebuild @@ -0,0 +1,166 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit autotools cuda eutils flag-o-matic fortran-2 multilib toolchain-funcs versionator + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_open-mx + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl + openmpi_ofed_features_failover" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 mpi-threads romio threads vt + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" + +MPI_UNCLASSED_DEP_STR=" + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + )" + +RDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec + dev-libs/libevent + dev-libs/libltdl:0 + >=sys-apps/hwloc-1.7.2 + cuda? ( dev-util/nvidia-cuda-toolkit ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-fabric/ofed ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_open-mx? ( sys-cluster/open-mx ) + openmpi_fabrics_psm? ( sys-fabric/infinipath-psm ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm ) + " +DEPEND="${RDEPEND}" + +pkg_setup() { + fortran-2_pkg_setup + + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi + + # https://github.com/open-mpi/ompi/issues/163 + epatch "${FILESDIR}"/openmpi-ltdl.patch + + AT_M4DIR=config eautoreconf +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --with-hwloc="${EPREFIX}/usr" + --with-libltdl=external + ) + + if use mpi-threads; then + myconf+=(--enable-mpi-threads + --enable-opal-multi-threads) + fi + + if use fortran; then + if [[ $(tc-getFC) =~ g77 ]]; then + myconf+=(--disable-mpi-f90) + elif [[ $(tc-getFC) =~ if ]]; then + # Enabled here as gfortran compile times are huge with this enabled. + myconf+=(--with-mpi-f90-size=medium) + fi + else + myconf+=(--disable-mpi-f90 --disable-mpi-f77) + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "$EPREFIX"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(use_enable openmpi_ofed_features_failover btl-openib-failover) \ + $(use_with openmpi_rm_pbs tm) \ + $(use_with openmpi_rm_slurm slurm) +} + +src_install () { + emake DESTDIR="${D}" install + # From USE=vt see #359917 + rm "${ED}"/usr/share/libtool &> /dev/null + # Avoid collisions with libevent + rm -rf "${ED}"/usr/include/event2 &> /dev/null + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + + # Do not override malloc during build. Works around #462602 + emake -j1 check +} diff --git a/sys-cluster/openmpi/openmpi-1.8.4-r4.ebuild b/sys-cluster/openmpi/openmpi-1.8.4-r4.ebuild new file mode 100644 index 000000000000..f028d4301614 --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.8.4-r4.ebuild @@ -0,0 +1,169 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit autotools cuda eutils flag-o-matic fortran-2 multilib toolchain-funcs versionator + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_open-mx + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl + openmpi_ofed_features_failover" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="alpha ~amd64 ~ia64 ppc ppc64 sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 mpi-threads numa romio threads vt + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" + +MPI_UNCLASSED_DEP_STR=" + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + )" + +RDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec + dev-libs/libevent + dev-libs/libltdl:0 + >=sys-apps/hwloc-1.9.1[numa?] + sys-libs/zlib + cuda? ( dev-util/nvidia-cuda-toolkit ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-fabric/ofed ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_open-mx? ( sys-cluster/open-mx ) + openmpi_fabrics_psm? ( sys-fabric/infinipath-psm ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm ) + " +DEPEND="${RDEPEND}" + +pkg_setup() { + fortran-2_pkg_setup + + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi + + # https://github.com/open-mpi/ompi/issues/163 + epatch "${FILESDIR}"/openmpi-ltdl.patch + + AT_M4DIR=config eautoreconf +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --with-hwloc="${EPREFIX}/usr" + --with-libltdl=external + ) + + if use mpi-threads; then + myconf+=(--enable-mpi-threads + --enable-opal-multi-threads) + fi + + if use fortran; then + myconf+=(--enable-mpi-fortran=all) + else + myconf+=(--enable-mpi-fortran=no) + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(use_enable openmpi_ofed_features_udcm openib-udcm) \ + $(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(use_enable openmpi_ofed_features_failover btl-openib-failover) \ + $(use_with openmpi_rm_pbs tm) \ + $(use_with openmpi_rm_slurm slurm) +} + +src_install () { + emake DESTDIR="${D}" install + + # From USE=vt see #359917 + rm "${ED}"/usr/share/libtool &> /dev/null + + # Avoid collisions with libevent + rm -rf "${ED}"/usr/include/event2 &> /dev/null + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}"/usr/$(get_libdir)/ -type f -name '*.la' -delete + + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} diff --git a/sys-cluster/openmpi/openmpi-1.8.7-r1.ebuild b/sys-cluster/openmpi/openmpi-1.8.7-r1.ebuild new file mode 100644 index 000000000000..fccf7a7c8285 --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.8.7-r1.ebuild @@ -0,0 +1,182 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit cuda eutils flag-o-matic fortran-2 java-pkg-opt-2 multilib toolchain-funcs versionator + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_open-mx + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl + openmpi_ofed_features_failover" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads vt + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" + +MPI_UNCLASSED_DEP_STR=" + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + )" + +CDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec + dev-libs/libevent + dev-libs/libltdl:0 + >=sys-apps/hwloc-1.9.1[numa?] + sys-libs/zlib + cuda? ( dev-util/nvidia-cuda-toolkit ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-fabric/ofed ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_open-mx? ( sys-cluster/open-mx ) + openmpi_fabrics_psm? ( sys-fabric/infinipath-psm ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm )" + +RDEPEND="${CDEPEND} + java? ( >=virtual/jre-1.6 )" + +DEPEND="${CDEPEND} + java? ( >=virtual/jdk-1.6 )" + +pkg_setup() { + fortran-2_pkg_setup + java-pkg-opt-2_pkg_setup + + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --with-hwloc="${EPREFIX}/usr" + --with-libltdl="${EPREFIX}/usr" + ) + + if use fortran; then + myconf+=(--enable-mpi-fortran=all) + else + myconf+=(--enable-mpi-fortran=no) + fi + + if use java; then + # We must always build with the right -source and -target + # flags. Passing flags to javac isn't explicitly supported here + # but we can cheat by overriding the configure test for javac. + export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(use_enable mpi-threads mpi-thread-multiple) \ + $(use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(use_enable openmpi_ofed_features_udcm openib-udcm) \ + $(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(use_enable openmpi_ofed_features_failover btl-openib-failover) \ + $(use_with openmpi_rm_pbs tm) \ + $(use_with openmpi_rm_slurm slurm) \ + $(use_enable java) \ + $(use_enable java mpi-java) +} + +src_install () { + emake DESTDIR="${D}" install + + # From USE=vt see #359917 + rm "${ED}"/usr/share/libtool &> /dev/null + + # Avoid collisions with libevent + rm -rf "${ED}"/usr/include/event2 &> /dev/null + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}"/usr/$(get_libdir)/ -type f -name '*.la' -delete + + if use java; then + local mpi_jar="${ED}"/usr/$(get_libdir)/mpi.jar + java-pkg_dojar "${mpi_jar}" + # We don't want to install the jar file twice + # so let's clean after ourselves. + rm "${mpi_jar}" || die + fi + + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} diff --git a/sys-cluster/openmpi/openmpi-1.8.8.ebuild b/sys-cluster/openmpi/openmpi-1.8.8.ebuild new file mode 100644 index 000000000000..af6407a8a709 --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.8.8.ebuild @@ -0,0 +1,182 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit cuda eutils flag-o-matic fortran-2 java-pkg-opt-2 multilib toolchain-funcs versionator + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_open-mx + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl + openmpi_ofed_features_failover" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads vt + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" + +MPI_UNCLASSED_DEP_STR=" + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + )" + +CDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec + dev-libs/libevent + dev-libs/libltdl:0 + >=sys-apps/hwloc-1.9.1[numa?] + sys-libs/zlib + cuda? ( dev-util/nvidia-cuda-toolkit ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_open-mx? ( sys-cluster/open-mx ) + openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* )" + +RDEPEND="${CDEPEND} + java? ( >=virtual/jre-1.6 )" + +DEPEND="${CDEPEND} + java? ( >=virtual/jdk-1.6 )" + +pkg_setup() { + fortran-2_pkg_setup + java-pkg-opt-2_pkg_setup + + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --with-hwloc="${EPREFIX}/usr" + --with-libltdl="${EPREFIX}/usr" + ) + + if use fortran; then + myconf+=(--enable-mpi-fortran=all) + else + myconf+=(--enable-mpi-fortran=no) + fi + + if use java; then + # We must always build with the right -source and -target + # flags. Passing flags to javac isn't explicitly supported here + # but we can cheat by overriding the configure test for javac. + export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(use_enable mpi-threads mpi-thread-multiple) \ + $(use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(use_enable openmpi_ofed_features_udcm openib-udcm) \ + $(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(use_enable openmpi_ofed_features_failover btl-openib-failover) \ + $(use_with openmpi_rm_pbs tm) \ + $(use_with openmpi_rm_slurm slurm) \ + $(use_enable java) \ + $(use_enable java mpi-java) +} + +src_install () { + emake DESTDIR="${D}" install + + # From USE=vt see #359917 + rm "${ED}"/usr/share/libtool &> /dev/null + + # Avoid collisions with libevent + rm -rf "${ED}"/usr/include/event2 &> /dev/null + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}"/usr/$(get_libdir)/ -type f -name '*.la' -delete + + if use java; then + local mpi_jar="${ED}"/usr/$(get_libdir)/mpi.jar + java-pkg_dojar "${mpi_jar}" + # We don't want to install the jar file twice + # so let's clean after ourselves. + rm "${mpi_jar}" || die + fi + + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} diff --git a/sys-cluster/openmpi/openmpi-2.0.2.ebuild b/sys-cluster/openmpi/openmpi-2.0.2.ebuild new file mode 100644 index 000000000000..5553a3fcd9ce --- /dev/null +++ b/sys-cluster/openmpi/openmpi-2.0.2.ebuild @@ -0,0 +1,175 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +FORTRAN_NEEDED=fortran + +inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl + openmpi_ofed_features_failover" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha amd64 arm ~ia64 ~ppc ~ppc64 sparc x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" + +# dev-util/nvidia-cuda-toolkit is always multilib +CDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/nullmpi + !sys-cluster/mpiexec + >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads] + dev-libs/libltdl:0[${MULTILIB_USEDEP}] + >=sys-apps/hwloc-1.11.2[${MULTILIB_USEDEP},numa?] + >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] + cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* )" + +RDEPEND="${CDEPEND} + java? ( >=virtual/jre-1.6 )" + +DEPEND="${CDEPEND} + java? ( >=virtual/jdk-1.6 )" + +MULTILIB_WRAPPED_HEADERS=( + /usr/include/mpi.h + /usr/include/openmpi/ompi/mpi/java/mpiJava.h +) + +pkg_setup() { + fortran-2_pkg_setup + java-pkg-opt-2_pkg_setup + + elog + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + elog +} + +src_prepare() { + default + + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf || die + fi +} + +multilib_src_configure() { + if use java; then + # We must always build with the right -source and -target + # flags. Passing flags to javac isn't explicitly supported here + # but we can cheat by overriding the configure test for javac. + export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" + fi + + ECONF_SOURCE=${S} econf \ + --sysconfdir="${EPREFIX}/etc/${PN}" \ + --enable-pretty-print-stacktrace \ + --enable-orterun-prefix-by-default \ + --with-hwloc="${EPREFIX}/usr" \ + --with-libltdl="${EPREFIX}/usr" \ + --with-libevent="${EPREFIX}/usr" \ + --enable-mpi-fortran=$(usex fortran all no) \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(multilib_native_use_enable java) \ + $(multilib_native_use_enable java mpi-java) \ + $(multilib_native_use_enable mpi-threads mpi-thread-multiple) \ + $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(multilib_native_use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ + $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(multilib_native_use_enable openmpi_ofed_features_failover btl-openib-failover) \ + $(multilib_native_use_with openmpi_rm_pbs tm) \ + $(multilib_native_use_with openmpi_rm_slurm slurm) +} + +multilib_src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} + +multilib_src_install() { + default + + # fortran header cannot be wrapped (bug #540508), workaround part 1 + if multilib_is_native_abi && use fortran; then + mkdir "${T}"/fortran || die + mv "${ED}"usr/include/mpif* "${T}"/fortran || die + else + # some fortran files get installed unconditionally + rm "${ED}"usr/include/mpif* "${ED}"usr/bin/mpif* || die + fi +} + +multilib_src_install_all() { + # fortran header cannot be wrapped (bug #540508), workaround part 2 + if use fortran; then + mv "${T}"/fortran/mpif* "${ED}"usr/include || die + fi + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}" -name '*.la' -delete || die + + if use java; then + local mpi_jar="${ED}"usr/$(get_libdir)/mpi.jar + java-pkg_dojar "${mpi_jar}" + # We don't want to install the jar file twice + # so let's clean after ourselves. + rm "${mpi_jar}" || die + fi + + einstalldocs +} diff --git a/sys-cluster/openmpi/openmpi-2.0.3.ebuild b/sys-cluster/openmpi/openmpi-2.0.3.ebuild new file mode 100644 index 000000000000..a711f2778004 --- /dev/null +++ b/sys-cluster/openmpi/openmpi-2.0.3.ebuild @@ -0,0 +1,175 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +FORTRAN_NEEDED=fortran + +inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl + openmpi_ofed_features_failover" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" + +# dev-util/nvidia-cuda-toolkit is always multilib +CDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/nullmpi + !sys-cluster/mpiexec + >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads] + dev-libs/libltdl:0[${MULTILIB_USEDEP}] + >=sys-apps/hwloc-1.11.2[${MULTILIB_USEDEP},numa?] + >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] + cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* )" + +RDEPEND="${CDEPEND} + java? ( >=virtual/jre-1.6 )" + +DEPEND="${CDEPEND} + java? ( >=virtual/jdk-1.6 )" + +MULTILIB_WRAPPED_HEADERS=( + /usr/include/mpi.h + /usr/include/openmpi/ompi/mpi/java/mpiJava.h +) + +pkg_setup() { + fortran-2_pkg_setup + java-pkg-opt-2_pkg_setup + + elog + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + elog +} + +src_prepare() { + default + + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf || die + fi +} + +multilib_src_configure() { + if use java; then + # We must always build with the right -source and -target + # flags. Passing flags to javac isn't explicitly supported here + # but we can cheat by overriding the configure test for javac. + export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" + fi + + ECONF_SOURCE=${S} econf \ + --sysconfdir="${EPREFIX}/etc/${PN}" \ + --enable-pretty-print-stacktrace \ + --enable-orterun-prefix-by-default \ + --with-hwloc="${EPREFIX}/usr" \ + --with-libltdl="${EPREFIX}/usr" \ + --with-libevent="${EPREFIX}/usr" \ + --enable-mpi-fortran=$(usex fortran all no) \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(multilib_native_use_enable java) \ + $(multilib_native_use_enable java mpi-java) \ + $(multilib_native_use_enable mpi-threads mpi-thread-multiple) \ + $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(multilib_native_use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ + $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(multilib_native_use_enable openmpi_ofed_features_failover btl-openib-failover) \ + $(multilib_native_use_with openmpi_rm_pbs tm) \ + $(multilib_native_use_with openmpi_rm_slurm slurm) +} + +multilib_src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} + +multilib_src_install() { + default + + # fortran header cannot be wrapped (bug #540508), workaround part 1 + if multilib_is_native_abi && use fortran; then + mkdir "${T}"/fortran || die + mv "${ED}"usr/include/mpif* "${T}"/fortran || die + else + # some fortran files get installed unconditionally + rm "${ED}"usr/include/mpif* "${ED}"usr/bin/mpif* || die + fi +} + +multilib_src_install_all() { + # fortran header cannot be wrapped (bug #540508), workaround part 2 + if use fortran; then + mv "${T}"/fortran/mpif* "${ED}"usr/include || die + fi + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}" -name '*.la' -delete || die + + if use java; then + local mpi_jar="${ED}"usr/$(get_libdir)/mpi.jar + java-pkg_dojar "${mpi_jar}" + # We don't want to install the jar file twice + # so let's clean after ourselves. + rm "${mpi_jar}" || die + fi + + einstalldocs +} diff --git a/sys-cluster/openmpi/openmpi-2.1.2.ebuild b/sys-cluster/openmpi/openmpi-2.1.2.ebuild new file mode 100644 index 000000000000..0ef453d9dc78 --- /dev/null +++ b/sys-cluster/openmpi/openmpi-2.1.2.ebuild @@ -0,0 +1,174 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +FORTRAN_NEEDED=fortran + +inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" + +# dev-util/nvidia-cuda-toolkit is always multilib +CDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/nullmpi + !sys-cluster/mpiexec + >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads] + dev-libs/libltdl:0[${MULTILIB_USEDEP}] + >=sys-apps/hwloc-1.11.2[${MULTILIB_USEDEP},numa?] + >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] + cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* )" + +RDEPEND="${CDEPEND} + java? ( >=virtual/jre-1.6 )" + +DEPEND="${CDEPEND} + java? ( >=virtual/jdk-1.6 )" + +MULTILIB_WRAPPED_HEADERS=( + /usr/include/mpi.h + /usr/include/openmpi/ompi/mpi/java/mpiJava.h +) + +pkg_setup() { + fortran-2_pkg_setup + java-pkg-opt-2_pkg_setup + + elog + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + elog +} + +src_prepare() { + default + + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf || die + fi +} + +multilib_src_configure() { + if use java; then + # We must always build with the right -source and -target + # flags. Passing flags to javac isn't explicitly supported here + # but we can cheat by overriding the configure test for javac. + export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" + fi + + ECONF_SOURCE=${S} econf \ + --sysconfdir="${EPREFIX}/etc/${PN}" \ + --enable-pretty-print-stacktrace \ + --enable-orterun-prefix-by-default \ + --with-hwloc="${EPREFIX}/usr" \ + --with-libltdl="${EPREFIX}/usr" \ + --with-libevent="${EPREFIX}/usr" \ + --enable-mpi-fortran=$(usex fortran all no) \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(multilib_native_use_enable java) \ + $(multilib_native_use_enable java mpi-java) \ + $(multilib_native_use_enable mpi-threads mpi-thread-multiple) \ + $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ + $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(multilib_native_use_with openmpi_rm_pbs tm) \ + $(multilib_native_use_with openmpi_rm_slurm slurm) +} + +multilib_src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} + +multilib_src_install() { + default + + # fortran header cannot be wrapped (bug #540508), workaround part 1 + if multilib_is_native_abi && use fortran; then + mkdir "${T}"/fortran || die + mv "${ED}"usr/include/mpif* "${T}"/fortran || die + else + # some fortran files get installed unconditionally + rm \ + "${ED}"usr/include/mpif* \ + "${ED}"usr/bin/mpif* \ + "${ED}"usr/bin/oshfort \ + "${ED}"usr/bin/shmemfort \ + || die + fi +} + +multilib_src_install_all() { + # fortran header cannot be wrapped (bug #540508), workaround part 2 + if use fortran; then + mv "${T}"/fortran/mpif* "${ED}"usr/include || die + fi + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}" -name '*.la' -delete || die + + if use java; then + local mpi_jar="${ED}"usr/$(get_libdir)/mpi.jar + java-pkg_dojar "${mpi_jar}" + # We don't want to install the jar file twice + # so let's clean after ourselves. + rm "${mpi_jar}" || die + fi + + einstalldocs +} |