gentoo resync : 09.03.2018

4 files changed, 158 insertions, 0 deletions

diff --git a/sci-misc/netlogo-bin/files/behaviorsearch-6.0.2.sh b/sci-misc/netlogo-bin/files/behaviorsearch-6.0.2.sh
new file mode 100755
index 000000000000..225f4a332cff
--- /dev/null
+++ b/sci-misc/netlogo-bin/files/behaviorsearch-6.0.2.sh
@@ -0,0 +1,38 @@
+#!/bin/bash
+
+WD="`pwd`"  #store the current working directory, where this script was called from.
+
+#BehaviorSearch needs to start in the NetLogo base folder,
+# and "behaviorsearch" must be installed in a subfolder of the NetLogo folder.
+NETLOGO_DIR="$( dirname $( readlink -f "$0" ))" # the copious quoting is for handling paths with spaces
+cd "$NETLOGO_DIR"
+NETLOGO_DIR="`pwd`"  #in case it's a relative path, like "."
+LIBRARY_DIR="${NETLOGO_DIR}/app"
+BSEARCH_DIR="${LIBRARY_DIR}/behaviorsearch"
+
+JARS=""
+for f in `ls -1 "$LIBRARY_DIR" | grep "jar"`; do
+  JARS="$LIBRARY_DIR/$f:$JARS"
+done
+
+# If you want to use a different version of java, or if "java" is not in your PATH, 
+# you can run this script with the BSEARCH_JAVA environment variable pointing 
+# to the java executable you want to use. e.g. "/opt/java6/bin/java"
+if [ -z "$BSEARCH_JAVA" ]; then 
+	BSEARCH_JAVA="java"
+fi
+
+JAVA_VERSION=`"$BSEARCH_JAVA" -version 2>&1 | head -n1 | awk '{ print substr($3,2,3) }' | sed -e 's;\.;0;g'`
+if [ $JAVA_VERSION -lt 108 ]; then  #108 = java 1.8
+	echo "Sorry, this program requires Java Runtime Environment 1.8 or higher"
+	exit 1
+fi
+
+# If you have enough RAM, up the '1536m' below to '2048m' or more.
+# Or you can set the BSEARCH_MAXMEM environment variable when running the script
+# More RAM is especially helpful for multiple threads/parallel execution.
+if [ -z "$BSEARCH_MAXMEM" ]; then
+    BSEARCH_MAXMEM=1536m
+fi
+
+"$BSEARCH_JAVA" -Dbsearch.startupfolder="$WD" -Dbsearch.appfolder="$BSEARCH_DIR" -server -Xms256m "-Xmx$BSEARCH_MAXMEM" -classpath "$JARS" bsearch.app.BehaviorSearch "$@"
diff --git a/sci-misc/netlogo-bin/files/hubnetclient-6.0.2.sh b/sci-misc/netlogo-bin/files/hubnetclient-6.0.2.sh
new file mode 100755
index 000000000000..3fb98d0909f1
--- /dev/null
+++ b/sci-misc/netlogo-bin/files/hubnetclient-6.0.2.sh
@@ -0,0 +1,40 @@
+#!/bin/bash
+
+BASE_DIR="$( cd "$( dirname $( readlink -f "${BASH_SOURCE[0]}" ) )" && pwd -P )"
+
+if [[ ${JAVA_HOME+1} ]]; then
+  JAVA="${JAVA_HOME}/bin/java"
+else
+  echo "JAVA_HOME undefined, using java from path. For control over exact java version, set JAVA_HOME"
+  JAVA="java"
+fi;
+
+# -Xmx1024m             use up to 1GB RAM (edit to increase)
+# -Dfile.encoding=UTF-8 ensure Unicode characters in model files are compatible cross-platform
+JVM_OPTS=(-Xmx1024m -Dfile.encoding=UTF-8)
+OPTS_INDEX=2
+
+ARGS=()
+INDEX=0
+
+for arg in "$@"; do
+  if [[ "$arg" == -D* ]]; then
+    JVM_OPTS[OPTS_INDEX++]="$arg"
+  else
+    ARGS[INDEX++]="$arg"
+  fi
+done
+
+RAW_CLASSPATH="args4j-2.0.12.jar:asm-all-5.0.4.jar:asm-all-5.0.4.jar:autolink-0.6.0.jar:behaviorsearch.jar:commons-codec-1.10.jar:commons-logging-1.1.1.jar:config-1.3.1.jar:flexmark-0.20.0.jar:flexmark-ext-autolink-0.20.0.jar:flexmark-ext-escaped-character-0.20.0.jar:flexmark-ext-typographic-0.20.0.jar:flexmark-formatter-0.20.0.jar:flexmark-util-0.20.0.jar:gluegen-rt-2.3.2.jar:httpclient-4.2.jar:httpcore-4.2.jar:httpmime-4.2.jar:jcommon-1.0.16.jar:jfreechart-1.0.13.jar:jhotdraw-6.0b1.jar:jmf-2.1.1e.jar:jogl-all-2.3.2.jar:json-simple-1.1.1.jar:log4j-1.2.16.jar:macro-compat_2.12-1.1.1.jar:macro-compat_2.12-1.1.1.jar:netlogo-6.0.2.jar:parboiled_2.12-2.1.3.jar:parboiled_2.12-2.1.3.jar:picocontainer-2.13.6.jar:picocontainer-2.13.6.jar:rsyntaxtextarea-2.6.0.jar:scala-library-2.12.2.jar:scala-parser-combinators_2.12-1.0.5.jar:shapeless_2.12-2.3.2.jar:shapeless_2.12-2.3.2.jar"
+CLASSPATH=''
+
+for jar in `echo $RAW_CLASSPATH | sed 's/:/ /g'`; do
+  CLASSPATH="$CLASSPATH:$BASE_DIR/app/$jar"
+done
+
+CLASSPATH=`echo $CLASSPATH | sed 's/://'`
+
+# -classpath ....         specify jars
+# org.nlogo.headless.Main specify we want headless, not GUI
+# "${ARGS[0]}"            pass along any additional arguments
+java "${JVM_OPTS[@]}" -Dnetlogo.extensions.dir="${BASE_DIR}/app/extensions" -classpath "$CLASSPATH" -Dorg.nlogo.is3d=true org.nlogo.hubnet.client.App "${ARGS[@]}"
diff --git a/sci-misc/netlogo-bin/files/netlogo-6.0.2.sh b/sci-misc/netlogo-bin/files/netlogo-6.0.2.sh
new file mode 100755
index 000000000000..5ad35832ba28
--- /dev/null
+++ b/sci-misc/netlogo-bin/files/netlogo-6.0.2.sh
@@ -0,0 +1,40 @@
+#!/bin/bash
+
+BASE_DIR="$( cd "$( dirname $( readlink -f "${BASH_SOURCE[0]}" ) )" && pwd -P )"
+
+if [[ ${JAVA_HOME+1} ]]; then
+  JAVA="${JAVA_HOME}/bin/java"
+else
+  echo "JAVA_HOME undefined, using java from path. For control over exact java version, set JAVA_HOME"
+  JAVA="java"
+fi;
+
+# -Xmx1024m             use up to 1GB RAM (edit to increase)
+# -Dfile.encoding=UTF-8 ensure Unicode characters in model files are compatible cross-platform
+JVM_OPTS=(-Xmx1024m -Dfile.encoding=UTF-8)
+OPTS_INDEX=2
+
+ARGS=()
+INDEX=0
+
+for arg in "$@"; do
+  if [[ "$arg" == -D* ]]; then
+    JVM_OPTS[OPTS_INDEX++]="$arg"
+  else
+    ARGS[INDEX++]="$arg"
+  fi
+done
+
+RAW_CLASSPATH="args4j-2.0.12.jar:asm-all-5.0.4.jar:asm-all-5.0.4.jar:autolink-0.6.0.jar:behaviorsearch.jar:commons-codec-1.10.jar:commons-logging-1.1.1.jar:config-1.3.1.jar:flexmark-0.20.0.jar:flexmark-ext-autolink-0.20.0.jar:flexmark-ext-escaped-character-0.20.0.jar:flexmark-ext-typographic-0.20.0.jar:flexmark-formatter-0.20.0.jar:flexmark-util-0.20.0.jar:gluegen-rt-2.3.2.jar:httpclient-4.2.jar:httpcore-4.2.jar:httpmime-4.2.jar:jcommon-1.0.16.jar:jfreechart-1.0.13.jar:jhotdraw-6.0b1.jar:jmf-2.1.1e.jar:jogl-all-2.3.2.jar:json-simple-1.1.1.jar:log4j-1.2.16.jar:macro-compat_2.12-1.1.1.jar:macro-compat_2.12-1.1.1.jar:netlogo-6.0.2.jar:parboiled_2.12-2.1.3.jar:parboiled_2.12-2.1.3.jar:picocontainer-2.13.6.jar:picocontainer-2.13.6.jar:rsyntaxtextarea-2.6.0.jar:scala-library-2.12.2.jar:scala-parser-combinators_2.12-1.0.5.jar:shapeless_2.12-2.3.2.jar:shapeless_2.12-2.3.2.jar"
+CLASSPATH=''
+
+for jar in `echo $RAW_CLASSPATH | sed 's/:/ /g'`; do
+  CLASSPATH="$CLASSPATH:$BASE_DIR/app/$jar"
+done
+
+CLASSPATH=`echo $CLASSPATH | sed 's/://'`
+
+# -classpath ....         specify jars
+# org.nlogo.headless.Main specify we want headless, not GUI
+# "${ARGS[0]}"            pass along any additional arguments
+java "${JVM_OPTS[@]}" -Dnetlogo.extensions.dir="${BASE_DIR}/app/extensions" -classpath "$CLASSPATH" org.nlogo.app.App "${ARGS[@]}"
diff --git a/sci-misc/netlogo-bin/files/netlogo3d-6.0.2.sh b/sci-misc/netlogo-bin/files/netlogo3d-6.0.2.sh
new file mode 100755
index 000000000000..5db1d3a2847b
--- /dev/null
+++ b/sci-misc/netlogo-bin/files/netlogo3d-6.0.2.sh
@@ -0,0 +1,40 @@
+#!/bin/bash
+
+BASE_DIR="$( cd "$( dirname $( readlink -f "${BASH_SOURCE[0]}" ) )" && pwd -P )"
+
+if [[ ${JAVA_HOME+1} ]]; then
+  JAVA="${JAVA_HOME}/bin/java"
+else
+  echo "JAVA_HOME undefined, using java from path. For control over exact java version, set JAVA_HOME"
+  JAVA="java"
+fi;
+
+# -Xmx1024m             use up to 1GB RAM (edit to increase)
+# -Dfile.encoding=UTF-8 ensure Unicode characters in model files are compatible cross-platform
+JVM_OPTS=(-Xmx1024m -Dfile.encoding=UTF-8)
+OPTS_INDEX=2
+
+ARGS=()
+INDEX=0
+
+for arg in "$@"; do
+  if [[ "$arg" == -D* ]]; then
+    JVM_OPTS[OPTS_INDEX++]="$arg"
+  else
+    ARGS[INDEX++]="$arg"
+  fi
+done
+
+RAW_CLASSPATH="args4j-2.0.12.jar:asm-all-5.0.4.jar:asm-all-5.0.4.jar:autolink-0.6.0.jar:behaviorsearch.jar:commons-codec-1.10.jar:commons-logging-1.1.1.jar:config-1.3.1.jar:flexmark-0.20.0.jar:flexmark-ext-autolink-0.20.0.jar:flexmark-ext-escaped-character-0.20.0.jar:flexmark-ext-typographic-0.20.0.jar:flexmark-formatter-0.20.0.jar:flexmark-util-0.20.0.jar:gluegen-rt-2.3.2.jar:httpclient-4.2.jar:httpcore-4.2.jar:httpmime-4.2.jar:jcommon-1.0.16.jar:jfreechart-1.0.13.jar:jhotdraw-6.0b1.jar:jmf-2.1.1e.jar:jogl-all-2.3.2.jar:json-simple-1.1.1.jar:log4j-1.2.16.jar:macro-compat_2.12-1.1.1.jar:macro-compat_2.12-1.1.1.jar:netlogo-6.0.2.jar:parboiled_2.12-2.1.3.jar:parboiled_2.12-2.1.3.jar:picocontainer-2.13.6.jar:picocontainer-2.13.6.jar:rsyntaxtextarea-2.6.0.jar:scala-library-2.12.2.jar:scala-parser-combinators_2.12-1.0.5.jar:shapeless_2.12-2.3.2.jar:shapeless_2.12-2.3.2.jar"
+CLASSPATH=''
+
+for jar in `echo $RAW_CLASSPATH | sed 's/:/ /g'`; do
+  CLASSPATH="$CLASSPATH:$BASE_DIR/app/$jar"
+done
+
+CLASSPATH=`echo $CLASSPATH | sed 's/://'`
+
+# -classpath ....         specify jars
+# org.nlogo.headless.Main specify we want headless, not GUI
+# "${ARGS[0]}"            pass along any additional arguments
+java "${JVM_OPTS[@]}" -Dnetlogo.extensions.dir="${BASE_DIR}/app/extensions" -classpath "$CLASSPATH" -Dorg.nlogo.is3d=true -Djava.library.path="${BASE_DIR}/app/natives/linux-amd64/:${env_var:PATH}" org.nlogo.app.App "${ARGS[@]}"