gentoo resync : 03.09.2021

8 files changed, 106 insertions, 3 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index 955941710783..a26a873f10eb 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/ginkgo/Manifest b/sci-libs/ginkgo/Manifest
index fe4baf6e7a46..75b5b058935b 100644
--- a/sci-libs/ginkgo/Manifest
+++ b/sci-libs/ginkgo/Manifest
@@ -1,5 +1,7 @@
 AUX ginkgo-1.1.1-set_soname.patch 673 BLAKE2B 740cebca34c0eb3472bb5c5b1cd3908701df0acd5b3683d87ed67722912860a3ce298bef181e7bd26defa162ae9374e87cccb0ca5d0df7b1ed296e6bc61b7122 SHA512 294b6855239ffb9bc311cdfbdf49956dba10ec47b6e0d3a48bf3a8e002720bb58d9a03ae5ce68c85552e789818f26913ca3a9d3307c5e68dc86db3a5f1d703d5
 DIST ginkgo-1.1.1.tar.gz 11787690 BLAKE2B 75c2c9b2d1e9ba00e3b0a20859af621cdf4aefe7c6e5ec9c7fc34a5368e5bee70d7d2b86ed9b2d9075ab7cc1a3334434fe20329d780f693be45fd7707cdbe27f SHA512 ab8f2d36453f4e60a4e0a13eddc4a137006c1cc6c9c0db00997dd721dfc06f4401109c5a22ba23a838206cff576d5041d06edaed8823006e69f11e360d1dadce
+DIST ginkgo-1.4.0.tar.gz 2574052 BLAKE2B 99677d9d75831991cac40312095d32c44bef18cd05b120d80fdb9e64ea6dc15796c09b26f35dc8230db6b55c7be4dd76efd6d1cd8ca13c83e1f3087550db0dca SHA512 9bfcb2c415c7a1a70cf8e49f20adf62d02cab83bb23b6fcecfeaeeb322b2d4e1ad8d8fa6582735073753f9a05eac8688b9bd1ff1d4203957c1a80702d117e807
 EBUILD ginkgo-1.1.1-r1.ebuild 1242 BLAKE2B 332b436207566c71de18d1163d63b79aeba8b4569d0a599edc337cfe86b7d83fa08abd7911b2877a1f7144ed1d78b4af59f17c15148fc0473e0b23b47cdd62ad SHA512 b63ee20c448e38059382e395702519e72384740a77dcafbb7a85611401edb142622c5aced2e901fa6d856c60611591efe9f834b50b24d6f80bfc7177be631ede
+EBUILD ginkgo-1.4.0.ebuild 1185 BLAKE2B f5c466f11bfcc4f52f29274b024ba313aea99e556deb7c92a5398f668217972c0a353d0d4735adfdb1285a768063525101401a91ac2db8fc03208e522b3c66c6 SHA512 eea6263bc2184ef16b896f193139df4883f8bea397afb6ce23bed4b99636df2046e48f1e6bd9bed7f089b8c908eaa5932fb4f07deecc89a879345c4d8909cfbc
 EBUILD ginkgo-9999.ebuild 1242 BLAKE2B 332b436207566c71de18d1163d63b79aeba8b4569d0a599edc337cfe86b7d83fa08abd7911b2877a1f7144ed1d78b4af59f17c15148fc0473e0b23b47cdd62ad SHA512 b63ee20c448e38059382e395702519e72384740a77dcafbb7a85611401edb142622c5aced2e901fa6d856c60611591efe9f834b50b24d6f80bfc7177be631ede
 MISC metadata.xml 809 BLAKE2B 03a441e0dab912e0e44360d81aaae8a290cdf8b3545850e796df22c211ed433a74cccc535c0ed655dafe741aedc4b272d40617104d4df92c14c8fdab6e63d3ce SHA512 8d21f84fa4e7a4d94056cd09324e223f510ce2100f4b5ab2874280a0012b1b74cf891faf1802bd780c6fb3bd86751fda6598787fa328f5d1fcde0e853889f4f5
diff --git a/sci-libs/ginkgo/ginkgo-1.4.0.ebuild b/sci-libs/ginkgo/ginkgo-1.4.0.ebuild
new file mode 100644
index 000000000000..56b629f829fc
--- /dev/null
+++ b/sci-libs/ginkgo/ginkgo-1.4.0.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit cmake-utils
+
+DESCRIPTION="Numerical linear algebra software package"
+HOMEPAGE="https://ginkgo-project.github.io/"
+
+if [[ ${PV} = *9999* ]]; then
+	EGIT_REPO_URI="https://github.com/ginkgo-project/ginkgo"
+	SRC_URI=""
+	inherit git-r3
+else
+	SRC_URI="https://github.com/${PN}-project/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86"
+fi
+
+LICENSE="BSD-with-attribution"
+SLOT="0"
+IUSE="+openmp cuda"
+
+RDEPEND="
+	cuda? ( dev-util/nvidia-cuda-sdk )"
+DEPEND="${RDEPEND}"
+
+pkg_setup() {
+	if [[ ${MERGE_TYPE} != binary ]] && \
+		use openmp && ! tc-has-openmp ; then
+			die "Need an OpenMP capable compiler"
+	fi
+}
+
+src_prepare() {
+	sed -i \
+		-e "s#\"lib\"#\"$(get_libdir)\"#g" \
+		-e "s#\"lib/#\"$(get_libdir)/#g" \
+		cmake/install_helpers.cmake || die "sed failed"
+
+	cmake-utils_src_prepare
+}
+
+src_configure() {
+
+	local mycmakeargs=(
+		-DGINKGO_DEVEL_TOOLS=OFF
+		-DGINKGO_BUILD_TESTS=OFF
+		-DGINKGO_BUILD_BENCHMARKS=OFF
+		-DGINKGO_BUILD_REFERENCE=ON
+		-DGINKGO_BUILD_OMP="$(usex openmp)"
+		-DGINKGO_BUILD_CUDA="$(usex cuda)"
+	)
+	cmake-utils_src_configure
+}
diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
new file mode 100644
index 000000000000..57a27ecb9d67
--- /dev/null
+++ b/sci-libs/libcifpp/Manifest
@@ -0,0 +1,4 @@
+DIST components-1.1.1.cif.gz 80378687 BLAKE2B 0776d79f733762ad19177bc93a5587e90966a7862f84174ede23a5875ae4633b519168b24b1c02d7afb30f9049d48434921a70c097a7e8238a5745f1676dcc78 SHA512 fc68513b37871677beb60855e82ed5831e10b08340697a97bbc7113d4c898b8e8382d097d36793346e34b97f0b5def5312fe7eb81ab4f120ad3908ee8d6d1aa3
+DIST libcifpp-1.1.1.tar.gz 978553 BLAKE2B 750cf80bac769a3db86b3be03924402da0254e69206a15222a5dfaa23a7eadcac1f57eb054f2fc783c287bfed86dab0a75d2994b031cc3cd3c2431a26e250d17 SHA512 e74419dada21ea12423c404c34eeb0b410fdb0b26827cd4451375329668909879b6d4795451c6f7c2b2ffc8d282dfcff2f1800630a3487111404335be4cb338f
+EBUILD libcifpp-1.1.1.ebuild 778 BLAKE2B be9a25b4d688f22d93b6fd7bcf963f1acbc3eeabd6d974eaa7f0edaae83e13042b8534011c8801c26490172e468c4ccb5aae7088efe4bb2732b04ada9e43d6a9 SHA512 60793162d3e6f308dbba936f75e9e9364d756edc93bd9135c39abce0fa405a3230e64d34247424d838a5ba2658176192f5898aeb7f720576c053139fca63c54b
+MISC metadata.xml 216 BLAKE2B 0fbfa16661345362ff89f87adc0bb42fc5f5c9145cdedb36f3f537b39af4023b91c4dfb0d8e83a4f9ac963141f594ba8ae678371c338d992a96e02c11fd84195 SHA512 628a69805356b7458edaa2297901224178b016477a937f77e692a78ce3e7a0b6d2d7b4c4b7e70d0185d7112e6a59a5131e07d8c950e90b9c8722471d7511afc6
diff --git a/sci-libs/libcifpp/libcifpp-1.1.1.ebuild b/sci-libs/libcifpp/libcifpp-1.1.1.ebuild
new file mode 100644
index 000000000000..63a6e309a1b4
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-1.1.1.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+inherit cmake tmpfiles
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp"
+SRC_URI="
+	https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz
+	ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz -> components-${PV}.cif.gz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="test"
+
+BDEPEND="
+	>=dev-libs/boost-1.70.0:0=[threads(+)]
+"
+DEPEND=""
+RDEPEND=""
+
+src_configure() {
+	mkdir data || die
+	cp "${WORKDIR}"/components-${PV}.cif data/components.cif || die
+
+	local mycmakeargs=(
+		-DBUILD_SHARED_LIBS=ON
+		-DUSE_RSRC=OFF
+		-DCIFPP_BUILD_TESTS="$(usex test)"
+	)
+	cmake_src_configure
+}
diff --git a/sci-libs/libcifpp/metadata.xml b/sci-libs/libcifpp/metadata.xml
new file mode 100644
index 000000000000..020b40648ee8
--- /dev/null
+++ b/sci-libs/libcifpp/metadata.xml
@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>pacho@gentoo.org</email>
+	</maintainer>
+</pkgmetadata>
diff --git a/sci-libs/scikit-learn/Manifest b/sci-libs/scikit-learn/Manifest
index d5e4de96805f..56a7c84f0ae5 100644
--- a/sci-libs/scikit-learn/Manifest
+++ b/sci-libs/scikit-learn/Manifest
@@ -1,4 +1,4 @@
 AUX scikit-learn-0.24.2-no-O3.patch 2346 BLAKE2B b4186a3e6a242ac964f4970adf227d2c6512141faf89828df60626aef73ab3d3de9fdeaf5fd31e230d196293b45feb11ff599a31b882ef86e1e563ff9209d7e6 SHA512 a6f2b74c424a000675ad838d95c71e459ca392f600875839cc5a740249a5db08e3d7968f87ae587398259d8dbf5ece91fe114f7c59581a32a03f3e9d183f81e8
 DIST scikit-learn-0.24.2.tar.gz 7589697 BLAKE2B a5a32db690e76d6ecfcb12d57a7f84ebcc7e67ecb73258c1d923f9b98a9d87c46aac96918ef7c3d8741f5dbeb46f169c73a7744fb7b92e6ab5cf42101a6bc2f1 SHA512 2159baf63414b9594918b40e1b72af2ab47349335ad4e3afd9756921f786737ed41d6deb333881e8c5c6e1f7ce9cfa10691b966dc2476c48c051621f9049d2ee
-EBUILD scikit-learn-0.24.2.ebuild 1805 BLAKE2B 7068a1538013068d72b41fd0fdceee3a548a4f099276d8e83d61b326c6672fe30136de1452ade265f54e4ac70e5ef5cc80e35031be8f99fc799262b8e90464bc SHA512 56412248e6cd41865537eaf2b2d3606a850a8c58df3d816157ea9880bba4ada721bab09f70974a399a9adebe7910670faeb397e8575ce70247ca3ab41cbc9876
+EBUILD scikit-learn-0.24.2.ebuild 1812 BLAKE2B 7e207e9b28c9a71c1d40b1a773bd42093ec69e82a9a016e3ed34769e07b712dfd95d49eff12292e8549bcf0fa4cb4afec160db3ad1ed721acbec922fd8055eeb SHA512 837357d9d1c44581ef6ea9968b46c8758e2a45a419adad4cc302a934a248d4e529249948b5bf4d2d62e7ead538e646cd6f595a4ab88f19a5cbb6228a3f7d93be
 MISC metadata.xml 736 BLAKE2B eb5c07231e185d9f9bd985209815f8515abf6bcff68e38563524542c8f591c1625711238b0d1b028776c8d658c32df3de4052a9dc88627a009eef5b8a7e68b5a SHA512 ee09304bdd96093bac49584a10b71650a3c764c28f03b851e197c31f8bbb6529b40433ad70f8100f33901b5b7fac8d349aad83ea10ad4770e16574484223af56
diff --git a/sci-libs/scikit-learn/scikit-learn-0.24.2.ebuild b/sci-libs/scikit-learn/scikit-learn-0.24.2.ebuild
index c8cd5f268027..f362753c369b 100644
--- a/sci-libs/scikit-learn/scikit-learn-0.24.2.ebuild
+++ b/sci-libs/scikit-learn/scikit-learn-0.24.2.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_COMPAT=( python3_{8..9} )
 DISTUTILS_IN_SOURCE_BUILD=1
 inherit distutils-r1
 
@@ -13,7 +13,7 @@ SRC_URI="https://github.com/scikit-learn/scikit-learn/archive/${PV}.tar.gz -> ${
 
 LICENSE="BSD"
 SLOT="0"
-KEYWORDS="amd64 ~arm64 ~ppc64 x86"
+KEYWORDS="amd64 ~arm64 ~ppc64 ~riscv x86"
 IUSE="examples"
 
 DEPEND="