gentoo auto-resync : 11:07:2023 - 10:29:18

4 files changed, 179 insertions, 11 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index 3250862f65c5..d405c492dcd3 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/dealii/Manifest b/sci-libs/dealii/Manifest
index bcd0abf27c4b..4353dd8b81d3 100644
--- a/sci-libs/dealii/Manifest
+++ b/sci-libs/dealii/Manifest
@@ -7,7 +7,10 @@ DIST dealii-9.4.1-offline_documentation.tar.gz 392007419 BLAKE2B 81404b02ba7dc97
 DIST dealii-9.4.1-offline_documentation.tar.gz.asc 246 BLAKE2B 9ace22c9b174e642cd3fba94c165d816c62814f892f5f6f272efa0301613dc55251152825e726fc6cf7e89bbfb7fa3552ec58ad426a7d58a74ecb89b9072f742 SHA512 50b43dd34a0687395f516f4910581df71054fa8be3c98006566ea649d0af866d38c9793da548ba6bdb7a9fec452dfb6d928d336aace943522d7c3f854209b81b
 DIST dealii-9.4.1.tar.gz 30298204 BLAKE2B 499f542c7a7f071d04048127199c7bebf5668b6e8d13fc2701dd18e28165442e58112ee9e4926e16a592bffdd5d7b7c240eea55808e5f9c021961f7e44b7da79 SHA512 39089aff462d3ff4244ce75f74a4cd908f8f72a81dcc3fb02ca91b3cad2442ceb78677e72cd928b36a04d352c4baa146a25fa5e14c886ca9e2bad0be0069f7b8
 DIST dealii-9.4.1.tar.gz.asc 246 BLAKE2B dbb1dc7b3e8a97f29287f154d11cd3db2566fdc4c7667fa57e686e2feba33f2115546408365f0e8f490ba593cb582b12489de373da3e33e8702b6e16804c7ebf SHA512 eb987d34f19b59d523d79f3c2c99f5f3125b1d0c71af0eb32b77ad5959d6197b79f1971a8a79dbc52bab698335dcb6091aac88c51d845a1e07d3681c089754c7
+DIST dealii-9.5.0-offline_documentation.tar.gz 412499027 BLAKE2B 521aa2488d84d48a624f4cbdbe9c173d0cdcee2df8d06b97b7c25ba28d4a2113a7da9fd9abd9eb64cd56b37f8edc716bd034fc3ba8823f8b1def26c34aaeeb55 SHA512 2e0d331f92d52b0fd909a0139157a1960a9222d46d537611f0508cdb79020a8e51ff0da6aefdf95adff732cea050b72df7dc1a8af7e93c736721970218815cfe
+DIST dealii-9.5.0.tar.gz 31524412 BLAKE2B 0388b4c8441b1e59baba3fcb3f19c19a357c452c7b30a95a040c1ae628f56734d85aeb4ed755fc68b7bb6c28b508d857f14bb0793e23b7e207f260e0a0bf70ac SHA512 33308711f9efb41030a509f25c537680e0980df95d90947641958f12ddd00c3aee542837de8ba4d100cbdb5470c001132c7526b52020e0eb219bf4b0f6c23586
 EBUILD dealii-9.4.0-r1.ebuild 5816 BLAKE2B 137b29949c766c705c7a52b664e068d8bfb5cbaaa18f0f1529100e72b86c15822385c705d0466863f2bb79056e7bdddfc0b62037ee985dc584d10c3d80562086 SHA512 19653f1d97a14ee787d29c56cc5b8dac6f6d54641da4789cb6764001ce4990fb3a951f8e27b6760cc32719846adc18c32870e42fd33ab937d5b1d1194ca8da86
 EBUILD dealii-9.4.1-r1.ebuild 5816 BLAKE2B 137b29949c766c705c7a52b664e068d8bfb5cbaaa18f0f1529100e72b86c15822385c705d0466863f2bb79056e7bdddfc0b62037ee985dc584d10c3d80562086 SHA512 19653f1d97a14ee787d29c56cc5b8dac6f6d54641da4789cb6764001ce4990fb3a951f8e27b6760cc32719846adc18c32870e42fd33ab937d5b1d1194ca8da86
-EBUILD dealii-9999.ebuild 5457 BLAKE2B 563555bc48094b503054f1b4ffe08a82f36c455c1aaa9fb4fe75e501bac9d6112418c5b438069cca49002436e453a11afdf9db03bc1e5c9b430ff674ed0f2e0b SHA512 5e774ba521cb02c2b20cb7b9c62dee2642831eddc20322244f287f28019ecaa32e1bd1cbfea1339ba1c2f9466b54723b3e5cae7968ed3ffd6e17f300fc16a7aa
+EBUILD dealii-9.5.0.ebuild 5136 BLAKE2B 2549e4cd5c22e51fb58f78f029a5a80105151b332c947e4be85c3098301e1a2ede7174d1589764b7d35645f1e5cd1370d588d4268a82abcd7a8a081db2c2782f SHA512 35b7645b04924d3e1e891acef0eeb10db4c3ebdc8c3a95fea9d02ff7825a94257e453a53d238a3d0b46a65f5ab75010e59eaf98eda3d84ed6cd090db643d4ab9
+EBUILD dealii-9999.ebuild 5166 BLAKE2B 0c67db38463a4b094f674148124049b7dcc4f015ddb4afddb69abae0b9d3948d620cc86e7014036de5fd3cd52bc7bd416e3577220641f79a0ef25600666316a3 SHA512 140fd4c5744b07984139931458ddc1491b66939ccd2ca3b3512d1e404d692692bc30210ad220d4c4ac13d751f364ea8031cfc744f7547fad1724d7a5dca93517
 MISC metadata.xml 2391 BLAKE2B 904b31425264a2da185a49a388bfb9415ca95c818e3c97774ccdf8e26baa706f0d2f4e6478dec4854a0164e5cdac512e4476f09ba6e3ec84d8a4b45b0e4d5131 SHA512 1bda00424bf63b1520818b3b350f08fc995200214a659435ce16b979de95077b82ed581320c15c9799d1934c0b58fcb56552329ebd4c5e9d93f01110027091d0
diff --git a/sci-libs/dealii/dealii-9.5.0.ebuild b/sci-libs/dealii/dealii-9.5.0.ebuild
new file mode 100644
index 000000000000..fc798a6b87d3
--- /dev/null
+++ b/sci-libs/dealii/dealii-9.5.0.ebuild
@@ -0,0 +1,168 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+# deal.II uses its own FindLAPACK.cmake file that calls into the system
+# FindLAPACK.cmake module and does additional internal setup. Do not remove
+# any of these modules:
+CMAKE_REMOVE_MODULES_LIST=""
+
+inherit cmake flag-o-matic
+
+DESCRIPTION="Solving partial differential equations with the finite element method"
+HOMEPAGE="https://www.dealii.org/"
+
+if [[ ${PV} = *9999* ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/dealii/dealii.git"
+	SRC_URI=""
+else
+	SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${PV}/${P}.tar.gz
+		doc? (
+			https://github.com/${PN}/${PN}/releases/download/v${PV}/${P}-offline_documentation.tar.gz
+			)"
+	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+fi
+
+LICENSE="LGPL-2.1+"
+SLOT="0"
+IUSE="
+	adolc arborx assimp arpack cgal cpu_flags_x86_avx cpu_flags_x86_avx512f
+	cpu_flags_x86_sse2 cuda +debug doc +examples ginkgo gmsh +gsl hdf5
+	+lapack metis mpi muparser opencascade p4est petsc scalapack slepc
+	+sparse sundials symengine trilinos
+"
+
+# TODO: add slepc use flag once slepc is packaged for gentoo-science
+REQUIRED_USE="
+	arborx? ( trilinos )
+	p4est? ( mpi )
+	slepc? ( petsc )
+	trilinos? ( mpi )"
+
+RDEPEND="dev-libs/boost:=
+	app-arch/bzip2
+	sys-libs/zlib
+	dev-cpp/tbb:=
+	arborx? ( sci-libs/arborx[mpi=] )
+	adolc? ( sci-libs/adolc )
+	arpack? ( sci-libs/arpack[mpi=] )
+	assimp? ( media-libs/assimp:= )
+	cgal? ( sci-mathematics/cgal )
+	cuda? ( dev-util/nvidia-cuda-toolkit )
+	ginkgo? ( sci-libs/ginkgo )
+	gmsh? ( sci-libs/gmsh )
+	gsl? ( sci-libs/gsl:= )
+	hdf5? ( sci-libs/hdf5[mpi=] )
+	lapack? ( virtual/lapack )
+	metis? (
+		>=sci-libs/metis-5
+		mpi? ( >=sci-libs/parmetis-4 )
+	)
+	mpi? ( virtual/mpi[cxx] )
+	muparser? ( dev-cpp/muParser )
+	opencascade? ( sci-libs/opencascade:= )
+	p4est? ( sci-libs/p4est[mpi] )
+	petsc? ( sci-mathematics/petsc[mpi=] )
+	scalapack? ( sci-libs/scalapack )
+	slepc? ( sci-mathematics/slepc[mpi=] )
+	sparse? ( sci-libs/umfpack )
+	sundials? ( sci-libs/sundials:= )
+	symengine? ( >=sci-libs/symengine-0.4:= )
+	trilinos? ( sci-libs/trilinos )
+	|| (
+		dev-cpp/kokkos
+		sci-libs/trilinos
+	)
+	"
+
+DEPEND="${RDEPEND}
+	virtual/pkgconfig
+	doc? ( app-doc/doxygen[dot] dev-lang/perl )"
+
+PATCHES=(
+)
+
+src_configure() {
+	# deal.II needs a custom build type:
+	local CMAKE_BUILD_TYPE=$(usex debug DebugRelease Release)
+
+	local mycmakeargs=(
+		-DDEAL_II_PACKAGE_VERSION="${PV}"
+		-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=OFF
+		-DDEAL_II_ALLOW_AUTODETECTION=OFF
+		-DDEAL_II_ALLOW_BUNDLED=OFF
+		-DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF
+		-DDEAL_II_COMPILE_EXAMPLES=OFF
+		-DDEAL_II_DOCHTML_RELDIR="share/doc/${P}/html"
+		-DDEAL_II_DOCREADME_RELDIR="share/doc/${P}"
+		-DDEAL_II_COMPILE_EXAMPLES=OFF
+		-DDEAL_II_EXAMPLES_RELDIR="share/doc/${P}/examples"
+		-DDEAL_II_LIBRARY_RELDIR="$(get_libdir)"
+		-DDEAL_II_SHARE_RELDIR="share/${PN}"
+		-DDEAL_II_WITH_ZLIB=ON
+		-DDEAL_II_WITH_ADOLC="$(usex adolc)"
+		-DDEAL_II_WITH_ARBORX="$(usex arborx)"
+		-DDEAL_II_WITH_ASSIMP="$(usex assimp)"
+		-DDEAL_II_WITH_ARPACK="$(usex arpack)"
+		-DDEAL_II_WITH_CGAL="$(usex cgal)"
+		-DDEAL_II_WITH_CUDA="$(usex cuda)"
+		-DDEAL_II_WITH_GINKGO="$(usex ginkgo)"
+		-DDEAL_II_COMPONENT_DOCUMENTATION="$(usex doc)"
+		-DDEAL_II_COMPONENT_EXAMPLES="$(usex examples)"
+		-DDEAL_II_WITH_GMSH="$(usex gmsh)"
+		-DDEAL_II_WITH_GSL="$(usex gsl)"
+		-DDEAL_II_WITH_HDF5="$(usex hdf5)"
+		-DDEAL_II_WITH_LAPACK="$(usex lapack)"
+		-DDEAL_II_WITH_METIS="$(usex metis)"
+		-DDEAL_II_WITH_MPI="$(usex mpi)"
+		-DDEAL_II_WITH_MUPARSER="$(usex muparser)"
+		-DDEAL_II_WITH_OPENCASCADE="$(usex opencascade)"
+		-DDEAL_II_WITH_P4EST="$(usex p4est)"
+		-DDEAL_II_WITH_PETSC="$(usex petsc)"
+		-DDEAL_II_WITH_SCALAPACK="$(usex scalapack)"
+		-DDEAL_II_WITH_SLEPC="$(usex slepc)"
+		-DDEAL_II_WITH_SUNDIALS="$(usex sundials)"
+		-DDEAL_II_WITH_SYMENGINE="$(usex symengine)"
+		-DDEAL_II_WITH_UMFPACK="$(usex sparse)"
+		-DDEAL_II_WITH_TBB=ON
+		-DDEAL_II_WITH_TRILINOS="$(usex trilinos)"
+	)
+
+	use opencascade && mycmakeargs+=(
+		-DCMAKE_PREFIX_PATH="/usr/$(get_libdir)/opencascade"
+	)
+
+	# Do a little dance for purely cosmetic QA reasons. The build system
+	# does query for the highest instruction set first and skips the other
+	# variables if a "higher" variant is set
+	if use cpu_flags_x86_avx512f; then
+		mycmakeargs+=( -DDEAL_II_HAVE_AVX512=yes )
+		append-cxxflags "-mavx512f"
+	elif use cpu_flags_x86_avx; then
+		mycmakeargs+=( -DDEAL_II_HAVE_AVX=yes )
+		append-cxxflags "-mavx2"
+	elif use cpu_flags_x86_avx; then
+		mycmakeargs+=( -DDEAL_II_HAVE_SSE2=yes )
+		append-cxxflags "-msse2"
+	fi
+
+	cmake_src_configure
+}
+
+src_install() {
+	if use doc && [[ ${PV} != *9999* ]]; then
+		# copy missing images to the build directory:
+		cp -r "${WORKDIR}"/doc/doxygen/deal.II/images \
+			"${BUILD_DIR}"/doc/doxygen/deal.II || die
+		# replace links:
+		sed -i \
+			's#"http://www.dealii.org/images/steps/developer/\(step-.*\)"#"images/\1"#g' \
+			"${BUILD_DIR}"/doc/doxygen/deal.II/step_*.html || die "sed failed"
+	fi
+	cmake_src_install
+
+	# decompress the installed example sources:
+	use examples && docompress -x /usr/share/doc/${PF}/examples
+}
diff --git a/sci-libs/dealii/dealii-9999.ebuild b/sci-libs/dealii/dealii-9999.ebuild
index 3d175695c483..c6d3a65a9086 100644
--- a/sci-libs/dealii/dealii-9999.ebuild
+++ b/sci-libs/dealii/dealii-9999.ebuild
@@ -31,7 +31,7 @@ IUSE="
 	adolc arborx assimp arpack cgal cpu_flags_x86_avx cpu_flags_x86_avx512f
 	cpu_flags_x86_sse2 cuda +debug doc +examples ginkgo gmsh +gsl hdf5
 	+lapack metis mpi muparser opencascade p4est petsc scalapack slepc
-	+sparse static-libs sundials symengine trilinos
+	+sparse sundials symengine trilinos
 "
 
 # TODO: add slepc use flag once slepc is packaged for gentoo-science
@@ -70,7 +70,12 @@ RDEPEND="dev-libs/boost:=
 	sparse? ( sci-libs/umfpack )
 	sundials? ( sci-libs/sundials:= )
 	symengine? ( >=sci-libs/symengine-0.4:= )
-	trilinos? ( sci-libs/trilinos )"
+	trilinos? ( sci-libs/trilinos )
+	|| (
+		dev-cpp/kokkos
+		sci-libs/trilinos
+	)
+	"
 
 DEPEND="${RDEPEND}
 	virtual/pkgconfig
@@ -109,7 +114,6 @@ src_configure() {
 		-DDEAL_II_WITH_GMSH="$(usex gmsh)"
 		-DDEAL_II_WITH_GSL="$(usex gsl)"
 		-DDEAL_II_WITH_HDF5="$(usex hdf5)"
-		-DDEAL_II_WITH_KOKKOS="$(usex trilinos)"
 		-DDEAL_II_WITH_LAPACK="$(usex lapack)"
 		-DDEAL_II_WITH_METIS="$(usex metis)"
 		-DDEAL_II_WITH_MPI="$(usex mpi)"
@@ -122,8 +126,6 @@ src_configure() {
 		-DDEAL_II_WITH_SUNDIALS="$(usex sundials)"
 		-DDEAL_II_WITH_SYMENGINE="$(usex symengine)"
 		-DDEAL_II_WITH_UMFPACK="$(usex sparse)"
-		-DBUILD_SHARED_LIBS="$(usex !static-libs)"
-		-DDEAL_II_PREFER_STATIC_LIBS="$(usex static-libs)"
 		-DDEAL_II_WITH_TBB=ON
 		-DDEAL_II_WITH_TASKFLOW=OFF
 		-DDEAL_II_WITH_TRILINOS="$(usex trilinos)"
@@ -147,11 +149,6 @@ src_configure() {
 		append-cxxflags "-msse2"
 	fi
 
-	# Unconditionally enable strict C++17 standard. This is necessary for
-	# USE=cgal and USE=kokkos and safe to set for all presently supported
-	# compilers
-	append-cxxflags "-std=c++17"
-
 	cmake_src_configure
 }