gentoo auto-resync : 14:10:2022 - 19:44:42

9 files changed, 123 insertions, 6 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index 95692f66bb92..94aad820b0c6 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/eccodes/Manifest b/sci-libs/eccodes/Manifest
index 7efb940bf2d9..d0b004a1435b 100644
--- a/sci-libs/eccodes/Manifest
+++ b/sci-libs/eccodes/Manifest
@@ -1,5 +1,5 @@
 DIST eccodes-2.18.0-Source.tar.gz 11525701 BLAKE2B 9dc2861472309c0483e4e7eb7b79c2eb2eb72b1e99f8656bb0355630e8012468d9d6513fb3bab7b3fbc7b2c02c3c74d291a6a8862aa8434cdcce82868f359961 SHA512 8daf7f2e1aed055ca6402881f5473e4ae90ba24cc779005f57f99adc7468da459c7539e64f455e2122dd83df29992fd7a6dad2700c8331c4083226e091fbb629
 DIST eccodes_test_data.tar.gz 139711871 BLAKE2B f2e89207835c78fa198f0a2fba8ac2cd4ab263c9160e02005a3ca851bc71586010e7f4742cbb9240463abb9421db83b7dadc83fe798f37321a553ca9856f68d7 SHA512 24c24ec9e01d230cf542abe5c131f05b8e627dd9d170c666628bb5fd8f7b1a6aa11a35456b8d742c59f54c6aabac78658efd68b0c50779d466aba3d35b4a0231
 DIST mercator.grib2 6339 BLAKE2B b63a72c711c28fa81568d123758f61804d73886c1f8dc27ab444daf3d1a0d104ef40b1469e9940413b5311c1cdcfa5de76a9d46ea0c57d08ccfd44ab41b8d4fb SHA512 e3d4e93833345675558b58c2e6f2b5a583c52083718da05cae72dd015d2e7699ee83c2dcce695143ee5e4423c890ef80f2448146d93e87fbfff8845f6efa8178
-EBUILD eccodes-2.18.0.ebuild 2625 BLAKE2B 2008d61708a4c67b66b2fd500f5f1d2cd91120b98ffe6dc05f2ac8819583df89ce9658a1fdbf5e07471107b8f66a79a9f0afc55c7b841b6c3d7ccc8adf573d36 SHA512 fecce5858f19767c73aa891daa59b59c3383c3488e13536db1007e801fca6ff5899a93c316503b6561acc3832fc89873493c77938f0fcba9be60fb508b29c89e
+EBUILD eccodes-2.18.0.ebuild 2626 BLAKE2B 6598c812f568784b872c5ff13461ff0007ae1c0316b7b4f84ef22db33d0e17de77fb993e39c3a42ce0ed3ea67f1bb1dfcf2878019cf34fabaf71e9d0d9dcd46a SHA512 4f8d8650f163786e73c55f2ae977948c8f678da2753e4521ef41bf2f1630788893aa7ac80fde53a05b46be31408af4f1d04d8c22492d517bf75d6f3e0341a942
 MISC metadata.xml 587 BLAKE2B 51c9791cb128a9f3dca55178757870b31b0993308f4464eb6188cd98bdd9e15520bcc55b6a72a20faae9dc1a66b9675e1a29445859d4c16492da4b975a640062 SHA512 a5f76399a55bd98625fe0703a973dae15f2bba70704df63560cc723f759b2a399e497282355e85f72370f57125fa4f32077895ee213d460a8df84a74dfb423b9
diff --git a/sci-libs/eccodes/eccodes-2.18.0.ebuild b/sci-libs/eccodes/eccodes-2.18.0.ebuild
index e55c5858c27b..315bcf0d2221 100644
--- a/sci-libs/eccodes/eccodes-2.18.0.ebuild
+++ b/sci-libs/eccodes/eccodes-2.18.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_COMPAT=( python3_{8..11} )
 
 inherit cmake fortran-2 python-any-r1
 
diff --git a/sci-libs/scikit-image/Manifest b/sci-libs/scikit-image/Manifest
index 6c66d2b08e25..3ce089bef856 100644
--- a/sci-libs/scikit-image/Manifest
+++ b/sci-libs/scikit-image/Manifest
@@ -1,7 +1,9 @@
 DIST scikit-image-0.17.2.tar.gz 29818001 BLAKE2B 360c5f8c23b8441d145029c09a3b1d1407d4103463497c63274583e6c03d1fc57baa3e6c53909cfaa5daba54d5909fc106e84dc7036f0240ad8de93804ef9f65 SHA512 3ca2511f03d533ac7f1850d72de396dc5493831bce6200f30d426c3f47eff9b25ec9b69e141100dc56e03f2310aab255f92ff4aff8bc7b80d15d669cbe2ebb5e
 DIST scikit-image-0.19.1.tar.gz 22225936 BLAKE2B 86aca2f120c12178d64fd62bce2b5272fc6df345789ed4b1ddee705384e583c7070af7bf885d47ae6769bbfb0676bfeef7fc431abfb10e1618594f31a27a7de8 SHA512 d7ccd4172abc07843a17a2de40240790cbeeb4177c7948cbf74663363ec9cecd3e40e70a245795d88ace57699e178f159198862b4c503fcb3fff95e8ef8f4ed9
 DIST scikit-image-0.19.2.tar.gz 22231106 BLAKE2B b99aa3e70ef01bb8964ed1ec98d14feea87bdef61a9d8590298391f7ead95ba89b287a07e2688e4fa0173ce97c43127c7b0d4b5356ca9d5ea9c2ed596ce99a3a SHA512 366d3e88842fab4febc4bd7dedf8a18a930a36437ea34e8cbe41c6bcfd3d5f59d496856b1a8d3a2f7fc1117563c162209677f2c5776066acc51783aab164db10
+DIST scikit-image-0.19.3.tar.gz 22232287 BLAKE2B 855584be0e69ac6e0dc7a17a68a1bca6843b471073e63d098b4933bc301eab5246d4cd2b444960de7fcd37012b66f7ba8cd6030ac485a7ab3aa1d36501aef0c7 SHA512 cda1699200e19155da13e313eb129771b7bb895913e552b959a3374267fe4f73c33d5e6e2fa2d49326903c901925797e46b9f05342a78c5332df1c266d37471a
 EBUILD scikit-image-0.17.2-r2.ebuild 1190 BLAKE2B bd547b16a54f47a427abf98f3889f2107845096933943344f75e891a7d99aa6793095a737df712347f8ac9ed2b608848b92fcf4d32c30f79ecb6c4059c9496e6 SHA512 8014e83b3886a8e1eb8cea4619c0fba915cfc25059c48cfb3d7de575ff5e8c29a6f082b91f970c87bd057c703ce9c336a438d3d85de07a4714d737cf53e85f8f
 EBUILD scikit-image-0.19.1-r1.ebuild 1438 BLAKE2B 947b537c720abbb59f27add33cc4e606e4f5c952668dd6fe66a1fe95f6355ebaf1d95668d3a93ecf0a322c60365cafe8a70d73fe995a109b5af5bdc8605694e3 SHA512 5d8132437fd683f38a0f94cdbb282752ad02c60e6cee2c63b3c788123318707c82e02845a10bf0de8b0f4826bb53c141d28b587773ddfa1830582735221af661
 EBUILD scikit-image-0.19.2-r1.ebuild 1637 BLAKE2B d7ecf954d87a6d1434aa3d249342da3661897cfb1e2918e30a1f9da54a6ce8015d753f6821e612a7f699b792a2a4a99ed9827af11d65fecca8cc2f8de0092273 SHA512 3e75dfdc71edce96fb312440ae986b97b85363c999164cf0bc85bc37a3e7a221b8e1fa7eff705702f0b7b3116bb42249c7ad660026d5b2b109c8e130272844d2
+EBUILD scikit-image-0.19.3.ebuild 1637 BLAKE2B d7ecf954d87a6d1434aa3d249342da3661897cfb1e2918e30a1f9da54a6ce8015d753f6821e612a7f699b792a2a4a99ed9827af11d65fecca8cc2f8de0092273 SHA512 3e75dfdc71edce96fb312440ae986b97b85363c999164cf0bc85bc37a3e7a221b8e1fa7eff705702f0b7b3116bb42249c7ad660026d5b2b109c8e130272844d2
 MISC metadata.xml 695 BLAKE2B 11487b964bde2ce1a39a8680bc3cc62045c4a7e2e17844de830d5f0e043660c431cd002a2a0fc19acb4c0262289ee280195475dd1f8b35f6a51ce0df369871f8 SHA512 fca83587d443373fc7219911900105676bdba5a7ced07ac00a9ab5cbe361d8ca1175b02b04fa53cdbde6f198a986b21f989baf32139cd76b7d1b2b78034d3142
diff --git a/sci-libs/scikit-image/scikit-image-0.19.3.ebuild b/sci-libs/scikit-image/scikit-image-0.19.3.ebuild
new file mode 100644
index 000000000000..870f5cb3d753
--- /dev/null
+++ b/sci-libs/scikit-image/scikit-image-0.19.3.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{8..10} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1 optfeature
+
+DESCRIPTION="Image processing routines for SciPy"
+HOMEPAGE="https://scikit-image.org/"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+RESTRICT="test"
+
+RDEPEND="
+	dev-python/imageio[${PYTHON_USEDEP}]
+	dev-python/matplotlib[${PYTHON_USEDEP}]
+	dev-python/networkx[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/pillow[${PYTHON_USEDEP}]
+	dev-python/pywavelets[${PYTHON_USEDEP}]
+	dev-python/scipy[sparse(+),${PYTHON_USEDEP}]
+	dev-python/tifffile[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	dev-python/cython[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+"
+
+DOCS=( CONTRIBUTORS.txt RELEASE.txt )
+
+distutils_enable_tests pytest
+# There is a programmable error in your configuration file:
+#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst_parser
+
+python_test() {
+	# This needs to be run in the install dir
+	cd "${WORKDIR}/${P}-${EPYTHON//./_}/install/usr/lib/${EPYTHON}/site-packages/skimage" || die
+	distutils-r1_python_test
+}
+
+pkg_postinst() {
+	optfeature "FITS io capability" dev-python/astropy
+	optfeature "GTK" dev-python/pygtk
+	optfeature "Parallel computation" dev-python/dask
+	optfeature "io plugin providing most standard formats" dev-python/imread
+	# not in portage yet
+	#optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
+}
diff --git a/sci-libs/scikit-learn/Manifest b/sci-libs/scikit-learn/Manifest
index 8a976a10f119..9870d00c7953 100644
--- a/sci-libs/scikit-learn/Manifest
+++ b/sci-libs/scikit-learn/Manifest
@@ -2,7 +2,9 @@ AUX scikit-learn-0.24.2-no-O3.patch 2346 BLAKE2B b4186a3e6a242ac964f4970adf227d2
 DIST scikit-learn-0.24.2.tar.gz 7589697 BLAKE2B a5a32db690e76d6ecfcb12d57a7f84ebcc7e67ecb73258c1d923f9b98a9d87c46aac96918ef7c3d8741f5dbeb46f169c73a7744fb7b92e6ab5cf42101a6bc2f1 SHA512 2159baf63414b9594918b40e1b72af2ab47349335ad4e3afd9756921f786737ed41d6deb333881e8c5c6e1f7ce9cfa10691b966dc2476c48c051621f9049d2ee
 DIST scikit-learn-1.0.2.tar.gz 6783296 BLAKE2B c5894b83c616117ac69e99d3eafe6b7218e085bfae099b41d09ecafc5cf116d4ef6849e69de2c1d833be1eb1e2479c1d200147ec1fcf73798c4e341dcaaa4d79 SHA512 1921a722ce887e04db94586a8100f435ca26038c32f1841ed8c7d5f17b5c7a3dbf5e036f5b0fca0f9907c32f80db5b082cb04141d14d22719ad78f3cfef51415
 DIST scikit-learn-1.1.1.gh.tar.gz 6896597 BLAKE2B c08bde0c531d221c40eb385ecdaa34e655442704142fe0e59b206ab17fb19ecf76866aad7dcf06f7eff3932be375ccbbdf43e150285b4f829bfb36604c963672 SHA512 366df2f0eea4d7ebf8e02829cd140c90299ee4a572e07e4e153032ffa650a990dd5ffc7d33bf8a23a4c76fdd97e296c801bc1471c79075f5631b1a341eb297ac
+DIST scikit-learn-1.1.2.gh.tar.gz 7104556 BLAKE2B e67e1deddf5a1134b57a146e8271a406cb257ffc92c9719e90f5b9d98e711b68bc67e3367660ecaad61aaec1794bb8999b4dd00b7d56e21eca8fcb2ee72cc9aa SHA512 58789c1e607d7de3339fa3b8928553ca96cef93e8da8fd13612aa78e5ebde8e6a55e3bf7845f9a45b78ed77da6a219d08d2c26318b602f937e0e3debd239293e
 EBUILD scikit-learn-0.24.2.ebuild 1813 BLAKE2B 179cc80ad5984f5179f156ef4114fe1a009d2d6258c758f030e832f191c477b1c1b22758cbbdb51ac95d7ebdc52341f9bba6fde02482dbdccf92c19e82fbf774 SHA512 0877f97ab8bae1392b183fdf26bc7f5036c1b7ddf8c58fab8acf19e6756592aa3c05128e9c34416d11cb2202e7c886b44b5d3929a2bf120d078a52965762dbef
 EBUILD scikit-learn-1.0.2.ebuild 1340 BLAKE2B 1984373b7d7f56884a502dd015ab1803f51e124baa76895a7a3e9f162836dc98f01df8497834857250a0bcd7cedcb9eb76b243ca4d4fdd9195f42f0f57926dbf SHA512 1d731915b21f348458a2443bd577cef7761f1aa644a8c7dbbd5f78762e19280f8bdcb2a041ab8adabc809042ca0889b9e266fcb95d466d2ccc2a34d8d0d68c6a
 EBUILD scikit-learn-1.1.1.ebuild 1529 BLAKE2B 3b307b4ef2f84580e777a08c6051672f05a04ce734cace26a1914154be548dea65de135440283d42c838dead454d97d539c30ddc338c989f33138f2e0675e72e SHA512 04d231193cd26225cee1b0a76fff119b29bbd7db7a5f085eead7c2d308b75f0410936451d058d04f6cb2b783f024daeb30496f6616d36c1d02c75ebaf71aea3e
+EBUILD scikit-learn-1.1.2.ebuild 1529 BLAKE2B 798f37b4076c7879fdc88602b8c2a73bd54fb6785acaeffc76ae6e31fd5467246e8adcaffa25555d78f885951da14f2e3650a9f776d15ab2ca21fd85384fc556 SHA512 feca3aa60864b230deeb31e41e618eaaaeadc84253bbbdb66aa25ebb6ccb6f01dd26403625c8f2b86276bb509d4778d5b13aadd652f870c421eb25cfb01d5547
 MISC metadata.xml 614 BLAKE2B b5425c2d022592581647c9b97c0ab22bfc2afe347b2e5ea22f141245238f145322f39406c62318ba1e6af1462b2691267b39976bfde38faaf1d28b1d29c4e015 SHA512 74ac79123848bc385c29fcfdc4a1e780529dda685c1deb5eb722f5d4919ee6ac9d80798d52c4af0be0cc8dbbaea3784963dd97e2b7c1258cc2f5605b0bc8907a
diff --git a/sci-libs/scikit-learn/scikit-learn-1.1.2.ebuild b/sci-libs/scikit-learn/scikit-learn-1.1.2.ebuild
new file mode 100644
index 000000000000..1db2eb9a0286
--- /dev/null
+++ b/sci-libs/scikit-learn/scikit-learn-1.1.2.ebuild
@@ -0,0 +1,59 @@
+# Copyright 2020-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{8..11} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="Machine learning library for Python"
+HOMEPAGE="https://scikit-learn.org/stable/"
+SRC_URI="https://github.com/scikit-learn/scikit-learn/archive/${PV}.tar.gz -> ${P}.gh.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~ppc64 ~riscv ~x86"
+IUSE="examples"
+
+# Fatal Python error: Segmentation fault
+RESTRICT="test"
+
+DEPEND="
+	virtual/blas:=
+	virtual/cblas:=
+"
+RDEPEND="
+	${DEPEND}
+	dev-python/wheel[${PYTHON_USEDEP}]
+	dev-python/cython[${PYTHON_USEDEP}]
+	dev-python/joblib[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/scipy[${PYTHON_USEDEP}]
+	dev-python/threadpoolctl[${PYTHON_USEDEP}]
+"
+
+distutils_enable_tests pytest
+# For some reason this wants to use urllib to fetch things from the internet
+# distutils_enable_sphinx doc \
+# 	dev-python/matplotlib \
+# 	dev-python/memory_profiler \
+# 	dev-python/numpydoc \
+# 	dev-python/pandas \
+# 	dev-python/pillow \
+# 	dev-python/seaborn \
+# 	dev-python/sphinx-gallery \
+# 	dev-python/sphinx-prompt \
+# 	sci-libs/scikit-image
+
+python_test() {
+	# This needs to be run in the install dir
+	cd "${WORKDIR}/${P}-${EPYTHON//./_}/install/usr/lib/${EPYTHON}/site-packages/sklearn" || die
+	distutils-r1_python_test
+}
+
+python_install_all() {
+	find "${S}" -name \*LICENSE.txt -delete || die
+	distutils-r1_python_install_all
+	use examples && dodoc -r examples
+}
diff --git a/sci-libs/scikit-optimize/Manifest b/sci-libs/scikit-optimize/Manifest
index ef17e094e5ec..c0b95608801c 100644
--- a/sci-libs/scikit-optimize/Manifest
+++ b/sci-libs/scikit-optimize/Manifest
@@ -1,5 +1,5 @@
 DIST scikit-optimize-0.8.1.tar.gz 278751 BLAKE2B c53b921ed47a2146510a041e34129918cc1b9118e8ae3614f39cc16c87ba5a749e268b9694ade9d95132ec4fb11777f2ef2ec509b1be59c8864ff7b6edde2250 SHA512 8ffacb62869810e1812bdbd2f9f3fe83cad2be03cd795ae2e9aa4e1143ed613c3901ae06be85aecd63c1e3e5b4805e88331d2d8848cc9953988fddfbe62a0287
 DIST scikit-optimize-0.9.0.tar.gz 275570 BLAKE2B ab481bf1cfc2b8c7cff213ae0ce2fa937de8f6269b491cf63ae115eea5c936c8a5c26b7fb339fa6cd2927c5105068635c008d6dc8b3f99b4b5d3abfed1a1c5a2 SHA512 a4c1bd589686dbbabcc5de38a4eb581c040cc2c3f83bc250ddcbe66314f03fc68b7b12d7679049da34c42445b446e1af3873f7ce90bec2a5361f0077ff3e9b74
 EBUILD scikit-optimize-0.8.1.ebuild 638 BLAKE2B 4739c17ab249c33839b5acfcdf3781fabf6b86347283f0495a7a67f7aa7c281df88b9b6b3868fc1dff66d020b1ab38ee94ec4e096baaa759d04fe7f1b3bf5a50 SHA512 cfb7921239703d6e1abe12e98111a3ee9b98b7a9ffa73cce4d1c25dd0056050c403c1cdc585a4c909260ed94147145e198367a5ba505967b066b920797c1f0d9
-EBUILD scikit-optimize-0.9.0.ebuild 837 BLAKE2B ec02a51f26711d867b093a3f827f183d6830728631ad7ead927dc13b8d574eb3531d13f6901d7fc9868dcf339ede29d19b5cbdac6b445b54f45d5d1eebc0811d SHA512 455a4373dffe312d0cc58aed20edfde25a2c785b243208299f66463479e07bd8873eb518de073c82eb1cc0f8ea2ccdd3d508e22d558f854371f197387a9d113a
+EBUILD scikit-optimize-0.9.0.ebuild 837 BLAKE2B 33b3aa147516f6e163631e0355d44844cd17bea666971d0838f044ff34790d77ae71e5505cbb3c4c2cd2b18edc233c935e728bc5698533ab6656f504ebbed193 SHA512 f6c9ac582f56b5d2760de23b9b1ce93ca41d56d60b33d76c3bab5819a109d7ec6ebb9d297d80dd74324e973ee6a71c57079322d25d448f8b96984f0aedb4c2c1
 MISC metadata.xml 415 BLAKE2B 3bfa58da8f117a7b62399a17e5259dbfb0e74b9b9acd16e4515bcceaafc2928733f047f229c58bc437907cddf3b8a93c9576a9645e0c910129900072bed94aff SHA512 6343c76ca9a28f321c3fd8c94dfbb912f305ce43025ab6d666ed0aa5a496f08f258e1ab4e11c14844baa3c04c63a43c1d79bc8067a0d02a4eccf0e37c0c686f7
diff --git a/sci-libs/scikit-optimize/scikit-optimize-0.9.0.ebuild b/sci-libs/scikit-optimize/scikit-optimize-0.9.0.ebuild
index e848ca405e67..ea7246239d10 100644
--- a/sci-libs/scikit-optimize/scikit-optimize-0.9.0.ebuild
+++ b/sci-libs/scikit-optimize/scikit-optimize-0.9.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 2020-2021 Gentoo Authors
+# Copyright 2020-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_COMPAT=( python3_{8..11} )
 inherit distutils-r1
 
 DESCRIPTION="Sequential model-based optimization library"