gentoo resync : 16.06.2018

2 files changed, 145 insertions, 0 deletions

diff --git a/sci-libs/scipy/Manifest b/sci-libs/scipy/Manifest
index 9330059e77b4..3f6e2049faa7 100644
--- a/sci-libs/scipy/Manifest
+++ b/sci-libs/scipy/Manifest
@@ -13,9 +13,13 @@ DIST scipy-0.19.1.tar.gz 14083805 BLAKE2B 65369ffec2726a8e16da2d6852a71965277b8d
 DIST scipy-1.0.0-html.zip 47873725 BLAKE2B 0c6c1070e46e644c9e5700a116e700a0ce8d69c1cfaa0ae63ae34af8844db83a7b61c5d072c54bdc23ef7016440ec6d378a45965778c0e8078113bf1a54bade3 SHA512 15d5726ad527bbe3e3e1579d5d2f6031393a2eca8e27adc6f78b16697e9dd67633407a160f461d7a18a8b8bde83201ccf363cdda8f9ca3531b6d6ec1491e0f14
 DIST scipy-1.0.0-ref.pdf 31394378 BLAKE2B bc8e590509cfb4bfda9deab40bbc6ebc919e39cb03a5817040ad2e9bbdfd0acc1a1dc194a88ac890a9052b6ddb3bb7b39292d08d925e3d1eb310605ca0589450 SHA512 657ef3c643ab61a8452dd85982018eb2210cd1531edd152c9b1c3d8c722f8a45ab1efd03f5bbb3c763a75e70e6d39036a845869ec5135f2aa0445480a074f3e0
 DIST scipy-1.0.0.tar.gz 15246397 BLAKE2B 37cd50c59830c91f0516c72cf11b367670faf5c1fe3fd3cf37bc6f30a4b1f44f7b1d124ff7097c3dcb8c32c3876e166ab1caaa3991a637df5f61bb26b0f52c3f SHA512 7d55c5660ac606933d517171a229b288fd0ea8d9fdd8e30fac3d294545a26b2700c7b100b014a93231c4122dee0f1ddd741c00f5902643a6ccc287cdf581da7a
+DIST scipy-1.1.0-html.zip 49851258 BLAKE2B 528df7ed8aa8e56662f436f31ee9e1d6d72d6fe962f9f0f6f84b7a2704b53009ce333b2102ec73bb7795110f8a61b18246aab95b1e21055f2b68c0ff2225b7bb SHA512 a03894a22a67c1359ee6206e9e1c9de1f926a7f829f5039f161e78df735708da09b0e51cdad3bf36bfede701d0bc5dc44f8cc0f249b6bfb80c9d8c9fe23aed46
+DIST scipy-1.1.0-ref.pdf 34360806 BLAKE2B f82807879d5d36d91d74e8983a0f4104bcb4b69cb7787fe5190f73fbbfcb8635a9399686b3c75736d3b0b5dd877b5280ff6fba728520e3b47c13ffc7835f8cd6 SHA512 c792064c986dffafa3c5d0741f30715028e655761d099f0fdd472270cf34642b367dfa2178ddceba13043a471e3aeb1db20d65308dbb40c704dab576aaadeb3e
+DIST scipy-1.1.0.tar.gz 15583560 BLAKE2B 477753e622ee26a3bc8c2cb6829410152df84b29ce17a6d53a66348f5536f7993fedf5d32b782405b54b3af3feabf9bc91c381ed39546076849c2fdb71039404 SHA512 72fe32c6c009613cb78202598e5db14f8e630b3218839cfe18d43d40550d94cc5aa100c6f5d41f40e86ae148e9b6a13431bb91b0f9be44b0569ccd7b725fe973
 EBUILD scipy-0.16.1.ebuild 4249 BLAKE2B 8335f8abb2453467099d68e97aa3aa669634f64b42e75b3c310f6f39178f90c9b8760a1ffa4bb76a3ff6285dc19806074e7408d16427416caa2bcdb9db6aed0e SHA512 adc049f57eb2c16565d8d99983409a6f64f57938aa649d89008587374550af06aa5d1f9476f61d9fcfbaa5615e60732381c1ed436b0dd9241aee00b43370ba44
 EBUILD scipy-0.18.1.ebuild 4254 BLAKE2B 156c9f9cfa488170e9be814e2238f1e4113f6e176f4458f3f659959ab6d552729afff18a3a0c392a579f7025c216a7ce354910f836a26549866764d86d070f74 SHA512 f20fd715cbb7667cabf636db6cf11b8b1de26c497ef87a6d4ee16324415867a9fe06f0bca57677eacb4622b621e60badcd97e8325dc74076492cb0e29ef8e4f2
 EBUILD scipy-0.19.1.ebuild 4192 BLAKE2B aafd6baf4cd291920f505860421d1f8c3976aec99eaa66234e314a7fb8442fc8cf0f2c049a0a5524d0db8acabb2414d81980ffb6c78c982202faf6a1b2a0c4e7 SHA512 3c23790d43940e5d8011abedd4e4035359a8d665d4ecc83a92542498af2f5214f8654cd05eb0c1fefde85aafcd208df05292ede0604fc246210a096a649b57ca
 EBUILD scipy-1.0.0.ebuild 3978 BLAKE2B 71dee72bb5508a1eb06e729e7040c9bed83aa7d09c329e32f0d6e67fe9ca7e7bbce28a796e688215e48185dd921b324ce2b4df32fd90d0d5b2a52da0247a11e9 SHA512 62a0364cf6a67f1342aa5f906d31527033e06ac1f8daf5378a459d7d2487b7d0d2860e1560e0c7f3698eafec1a2abcf14159f89041b3068e5f33bfd7ba7ebef3
+EBUILD scipy-1.1.0.ebuild 3978 BLAKE2B cd7dc524ac127f6bb0e11644d6b23c644e38651c03df0ef7c5069987d92d5de34a549d8577588433c515f0cc70ad136d28a47209a6d8fdb67553f2c6e8d6bcb6 SHA512 416f80d36a83bb8a300e16b2543313782de6a16dfbe75c96cf148390aee2d886454ca90d8bde13f11b40131236889e45dcc4137e01f636d074bd66b1bee6233f
 EBUILD scipy-9999.ebuild 3615 BLAKE2B 83d9274d3c6cc56d1de623b99e15da74df3615aec38675912937cf0572a74ce5ad0eaaa945e541707d8a5444251d4009eddeeffb287cd4db89cf610188f0759b SHA512 55148129c46cacdca338380d7d26792dcdb5d7fa3128273de9c44e930d6bf83715574d26d8b065fec8b633f1efbda9d9446a5b6bae04bc9069d315a1ee85f385
 MISC metadata.xml 931 BLAKE2B 3e358fcc4354b870a4794f13ed6c840f2c55ffdf4d6306977e6db3606b73e7df9b682a18973f0aa2a1d0d9eabb2d7d40c6aa5c6026813385361700bdc227afd8 SHA512 ae95726c4c661a2e5708a98b347f8ea25708574bbaf8ec86f315069551d6a0d68a43279b214be8b54cd20e5aacea1a9abd40a2de43d51f292a830cab0955d625
diff --git a/sci-libs/scipy/scipy-1.1.0.ebuild b/sci-libs/scipy/scipy-1.1.0.ebuild
new file mode 100644
index 000000000000..789041b2c35b
--- /dev/null
+++ b/sci-libs/scipy/scipy-1.1.0.ebuild
@@ -0,0 +1,141 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
+PYTHON_REQ_USE="threads(+)"
+
+DOC_PV=${PV}
+
+inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="https://www.scipy.org/"
+SRC_URI="
+	mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
+	doc? (
+		https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip
+		https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf
+	)"
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+IUSE="doc sparse test"
+KEYWORDS="~amd64 ~arm ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
+
+CDEPEND="
+	>=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}]
+	sci-libs/arpack:0=
+	virtual/cblas
+	virtual/lapack
+	sparse? ( sci-libs/umfpack:0= )"
+DEPEND="${CDEPEND}
+	dev-lang/swig
+	>=dev-python/cython-0.22[${PYTHON_USEDEP}]
+	>=dev-python/setuptools-36[${PYTHON_USEDEP}]
+	virtual/pkgconfig
+	doc? ( app-arch/unzip )
+	test? (
+		dev-python/nose[${PYTHON_USEDEP}]
+		dev-python/pytest[${PYTHON_USEDEP}]
+	)"
+RDEPEND="${CDEPEND}
+	dev-python/pillow[${PYTHON_USEDEP}]"
+
+DOCS=( HACKING.rst.txt THANKS.txt )
+
+DISTUTILS_IN_SOURCE_BUILD=1
+
+src_unpack() {
+	default
+	if use doc; then
+		unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die
+	fi
+}
+
+pc_incdir() {
+	$(tc-getPKG_CONFIG) --cflags-only-I $@ | \
+		sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libdir() {
+	$(tc-getPKG_CONFIG) --libs-only-L $@ | \
+		sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libs() {
+	$(tc-getPKG_CONFIG) --libs-only-l $@ | \
+		sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
+		-e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
+		| tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
+}
+
+python_prepare_all() {
+	# scipy automatically detects libraries by default
+	export {FFTW,FFTW3,UMFPACK}=None
+	use sparse && unset UMFPACK
+	# the missing symbols are in -lpythonX.Y, but since the version can
+	# differ, we just introduce the same scaryness as on Linux/ELF
+	[[ ${CHOST} == *-darwin* ]] \
+		&& append-ldflags -bundle "-undefined dynamic_lookup" \
+		|| append-ldflags -shared
+	[[ -z ${FC}  ]] && export FC="$(tc-getFC)"
+	# hack to force F77 to be FC until bug #278772 is fixed
+	[[ -z ${F77} ]] && export F77="$(tc-getFC)"
+	export F90="${FC}"
+	export SCIPY_FCONFIG="config_fc --noopt --noarch"
+	append-fflags -fPIC
+
+	local libdir="${EPREFIX}"/usr/$(get_libdir)
+	cat >> site.cfg <<-EOF || die
+		[blas]
+		include_dirs = $(pc_incdir cblas)
+		library_dirs = $(pc_libdir cblas blas):${libdir}
+		blas_libs = $(pc_libs cblas blas)
+		[lapack]
+		library_dirs = $(pc_libdir lapack):${libdir}
+		lapack_libs = $(pc_libs lapack)
+	EOF
+
+	# Drop hashes to force rebuild of cython based .c code
+	rm cythonize.dat || die
+
+	distutils-r1_python_prepare_all
+}
+
+python_compile() {
+	${EPYTHON} tools/cythonize.py || die
+	distutils-r1_python_compile \
+		$(usex python_targets_python3_5 "" "-j $(makeopts_jobs)") \
+		${SCIPY_FCONFIG}
+}
+
+python_test() {
+	# fails with bdist_egg. should it be fixed in distutils-r1 eclass?
+	distutils_install_for_testing ${SCIPY_FCONFIG}
+	cd "${TEST_DIR}" || die "no ${TEST_DIR} available"
+	"${PYTHON}" -c \
+		'import numpy as np; print("relaxed strides checking:", np.ones((10,1),order="C").flags.f_contiguous)' \
+		|| die
+	"${EPYTHON}" -c \
+		"import scipy, sys; r = scipy.test('fast', verbose=2); sys.exit(r)" \
+		|| die "Tests fail with ${EPYTHON}"
+}
+
+python_install_all() {
+	use doc && \
+		local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \
+		local HTML_DOCS=( "${WORKDIR}"/html/. )
+	distutils-r1_python_install_all
+}
+
+python_install() {
+	distutils-r1_python_install ${SCIPY_FCONFIG}
+}
+
+pkg_postinst() {
+	elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
+	elog "to your prefered image viewer. Example:"
+	elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
+}