gentoo resync : 19.07.2019

3 files changed, 438 insertions, 0 deletions

diff --git a/sci-libs/gdal/Manifest b/sci-libs/gdal/Manifest
index d9067acb9d14..a43f86619f9e 100644
--- a/sci-libs/gdal/Manifest
+++ b/sci-libs/gdal/Manifest
@@ -3,6 +3,8 @@ AUX gdal-2.2.3-soname.patch 2062 BLAKE2B 159b3d8eec126a141ff21c908d45193411bdbcc
 AUX gdal-2.3.0-curl.patch 471 BLAKE2B 551c9fba5cd49afef45ae271f20b8440214b06f569893cf8dfba73bd5682a9494e8ff1d3c81c1784019e49149d56aa4a4f4ced77db2d1a29f12eaec3f4fbce72 SHA512 a23a7df486ed2fe0c000a87405ad56ed48107a957ce29bd6692df26ef93e493b2221b856720721cafeba9646c4c959e154549c87e1012a8a65389343d267dbe6
 AUX gdal-2.4.1-poppler-0.75.patch 5452 BLAKE2B 7cb3b1e84f2f1ff91af49cb4292047f055aeff5a45c8f0d4c440c99d2ab746d32500f11c040f0eaba72b8da9122ab5fc3b5d50dc082c60281354652ab65fff9f SHA512 7482a8a160f514c31c11d101e1f8a2c32dcc862b3c7bc76ac11712bca7c3088975b4fefae33a6d68a847a5e54982b8d02d6bdc8dee27dd0d5efea0f6d28590ed
 AUX gdal-2.4.1-poppler-0.76.patch 699 BLAKE2B 132ff0a3046734e851d12379d049b2e4fdbefcd4bb6949ddf9fa18b856b1ae20d2a2ec9dbcc0d973097cd2ba5f6e72e852b26a93997ffe4b428fe79d44b5c1cf SHA512 09cdd963dbc5e09d211663f54b1cef72eeeda7484ad10b08862907df60aefc068d840e80d4fd0aa0776a03edca89e8affb8b614c4db02085e854bb4a14342d4f
+AUX gdal-2.4.1-swig-4.patch 4239 BLAKE2B d3bfc88aa79fa94015816cd6e620b7520c765379668542dc1fa5c20192898e9e25fcd1a4cc7aed98fca8d07dc1e0a06b6bcd60fa19049af738f061f7537a7129 SHA512 7db4206ce24a35b4b71859310cc4218fd02c3c2900892fc51950d7ddb90b5e743dc42fe4fe545404063ffeb2f0eaa4319f616a200ed3e92723ed04db4300f7c0
 DIST gdal-2.4.1.tar.gz 14546610 BLAKE2B 92404336339c6f46877f3e6599af6fc67a53714888ff66fc0142efa8ddf185ad34d9ec337dcbad67f059041da31e70073a9e41872a7332fd9977552d79fcbc61 SHA512 b25e49f343986af6f37e0bec6dc3084cbcf1a0080da5cfd91d1a58c1d9ffd2ac355299d66534e63e89358cbb15ecd0f2ae934d91bbd2a3749889dadaf266e483
+EBUILD gdal-2.4.1-r1.ebuild 8161 BLAKE2B 6bee2d21a8133149aed8faefec5af07179c931be414961c31956247913e40ce50f5675c8db283d2976201f1a15a1611d5a0f042ad7e72b25b936022dd7a8f5ba SHA512 8d77bb9842f605089bd0cbab4fe851408b278a1d8617b709cc4da8176cb3f9b6fada30ffcafb57062da19ae9b13e51174c2aad3dae5e86d7d29db478eb5f4d40
 EBUILD gdal-2.4.1.ebuild 8110 BLAKE2B 6d6b7f39ad24da917aab354d89a4f6292019e5d5ef788ab286903bd7ff4095bbe66aa965c19f33a913335c679ed0d37bdecea0652d754a145f1d3bf312770579 SHA512 f59fff51426669bac6ca5e2394b7762114f83be5d76807df250dced8355079742ec568f8170b5dfed1c3fd46c01009065faeb9a42e03af72828a5a6b93f585a7
 MISC metadata.xml 1522 BLAKE2B b67678f81739e2fb2866cc6ca49545368fce4a85b145ba3f8228b8a39ecb2d7f75b55500f13768838c9ed11a47f586ab7b05eb31e2dbf6fcd4d29c5d8896107f SHA512 091112e555a5a77c5643cbd4465046bfd9fe287e209b42f5410787a2f1a2e4d7ec640efad93c277f0f6581db2264fa104d5aba2e8cbc4126c2c14fe4d86afcee
diff --git a/sci-libs/gdal/files/gdal-2.4.1-swig-4.patch b/sci-libs/gdal/files/gdal-2.4.1-swig-4.patch
new file mode 100644
index 000000000000..9d104e60f60a
--- /dev/null
+++ b/sci-libs/gdal/files/gdal-2.4.1-swig-4.patch
@@ -0,0 +1,115 @@
+From 7a2c9f9348e1bf6bd95033d0b4da09a243fd9e6d Mon Sep 17 00:00:00 2001
+From: Even Rouault <even.rouault@spatialys.com>
+Date: Mon, 8 Jul 2019 14:34:55 +0200
+Subject: [PATCH] Python bindings: add compatibility with SWIG 4.0 (based on
+ patch by @perestoronin, fixes #1702)
+
+---
+ gdal/swig/include/gdal_array.i                  |  6 ++++++
+ gdal/swig/include/python/typemaps_python.i      |  9 ++++++++-
+ gdal/swig/python/extensions/gdal_array_wrap.cpp | 15 ++++++++++++++-
+ gdal/swig/python/extensions/gdal_wrap.cpp       |  9 ++++++++-
+ 4 files changed, 36 insertions(+), 3 deletions(-)
+
+diff --git a/swig/include/gdal_array.i b/swig/include/gdal_array.i
+index c4f6f19b610..bf053eb2476 100644
+--- a/swig/include/gdal_array.i
++++ b/swig/include/gdal_array.i
+@@ -899,12 +899,18 @@ retStringAndCPLFree* GetArrayFilename(PyArrayObject *psArray)
+     }
+ 
+     /* Keep a reference to the VirtualMem object */
++%#if SWIGVERSION >= 0x040000
++%#define obj0 swig_obj[0]
++%#endif
+ %#if NPY_API_VERSION >= 0x00000007
+     PyArray_SetBaseObject(ar, obj0);
+ %#else
+     PyArray_BASE(ar) = obj0;
+ %#endif
+     Py_INCREF(obj0);
++%#if SWIGVERSION >= 0x040000
++%#undef obj0
++%#endif
+     Py_DECREF($result);
+     $result = (PyObject*) ar;
+ }
+diff --git a/swig/include/python/typemaps_python.i b/swig/include/python/typemaps_python.i
+index 5c9f36ab278..9266422e9c4 100644
+--- a/swig/include/python/typemaps_python.i
++++ b/swig/include/python/typemaps_python.i
+@@ -2104,7 +2104,14 @@ DecomposeSequenceOf4DCoordinates( PyObject *seq, int nCount, double *x, double *
+ %#if PY_VERSION_HEX >= 0x02070000
+   /* %typemap(argout) (void** pptr, size_t* pnsize, GDALDataType* pdatatype, int* preadonly)*/
+   Py_buffer *buf=(Py_buffer*)malloc(sizeof(Py_buffer));
+-  if (PyBuffer_FillInfo(buf,  obj0,  *($1), *($2), *($4), PyBUF_ND)) {
++
++  if (PyBuffer_FillInfo(buf,
++%#if SWIGVERSION >= 0x040000
++                        swig_obj[0],
++%#else
++                        obj0,
++%#endif
++                        *($1), *($2), *($4), PyBUF_ND)) {
+     // error, handle
+   }
+   if( *($3) == GDT_Byte )
+diff --git a/swig/python/extensions/gdal_array_wrap.cpp b/swig/python/extensions/gdal_array_wrap.cpp
+index 807e12dd4a0..4435803e6d9 100644
+--- a/swig/python/extensions/gdal_array_wrap.cpp
++++ b/swig/python/extensions/gdal_array_wrap.cpp
+@@ -4598,7 +4598,14 @@ SWIGINTERN PyObject *_wrap_VirtualMem_GetAddr(PyObject *SWIGUNUSEDPARM(self), Py
+ #if PY_VERSION_HEX >= 0x02070000
+     /* %typemap(argout) (void** pptr, size_t* pnsize, GDALDataType* pdatatype, int* preadonly)*/
+     Py_buffer *buf=(Py_buffer*)malloc(sizeof(Py_buffer));
+-    if (PyBuffer_FillInfo(buf,  obj0,  *(arg2), *(arg3), *(arg5), PyBUF_ND)) {
++    
++    if (PyBuffer_FillInfo(buf,
++    #if SWIGVERSION >= 0x040000
++        swig_obj[0],
++    #else
++        obj0,
++    #endif
++        *(arg2), *(arg3), *(arg5), PyBUF_ND)) {
+       // error, handle
+     }
+     if( *(arg4) == GDT_Byte )
+@@ -5597,12 +5604,18 @@ SWIGINTERN PyObject *_wrap_VirtualMemGetArray(PyObject *SWIGUNUSEDPARM(self), Py
+     }
+     
+     /* Keep a reference to the VirtualMem object */
++#if SWIGVERSION >= 0x040000
++#define obj0 swig_obj[0]
++#endif
+ #if NPY_API_VERSION >= 0x00000007
+     PyArray_SetBaseObject(ar, obj0);
+ #else
+     PyArray_BASE(ar) = obj0;
+ #endif
+     Py_INCREF(obj0);
++#if SWIGVERSION >= 0x040000
++#undef obj0
++#endif
+     Py_DECREF(resultobj);
+     resultobj = (PyObject*) ar;
+   }
+diff --git a/swig/python/extensions/gdal_wrap.cpp b/swig/python/extensions/gdal_wrap.cpp
+index 37cb635339e..f2f014fd0b5 100644
+--- a/swig/python/extensions/gdal_wrap.cpp
++++ b/swig/python/extensions/gdal_wrap.cpp
+@@ -15238,7 +15238,14 @@ SWIGINTERN PyObject *_wrap_VirtualMem_GetAddr(PyObject *SWIGUNUSEDPARM(self), Py
+ #if PY_VERSION_HEX >= 0x02070000
+     /* %typemap(argout) (void** pptr, size_t* pnsize, GDALDataType* pdatatype, int* preadonly)*/
+     Py_buffer *buf=(Py_buffer*)malloc(sizeof(Py_buffer));
+-    if (PyBuffer_FillInfo(buf,  obj0,  *(arg2), *(arg3), *(arg5), PyBUF_ND)) {
++    
++    if (PyBuffer_FillInfo(buf,
++    #if SWIGVERSION >= 0x040000
++        swig_obj[0],
++    #else
++        obj0,
++    #endif
++        *(arg2), *(arg3), *(arg5), PyBUF_ND)) {
+       // error, handle
+     }
+     if( *(arg4) == GDT_Byte )
diff --git a/sci-libs/gdal/gdal-2.4.1-r1.ebuild b/sci-libs/gdal/gdal-2.4.1-r1.ebuild
new file mode 100644
index 000000000000..5524199c1e1a
--- /dev/null
+++ b/sci-libs/gdal/gdal-2.4.1-r1.ebuild
@@ -0,0 +1,321 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+GENTOO_DEPEND_ON_PERL="no"
+PYTHON_COMPAT=( python2_7 python3_{5,6,7} )
+DISTUTILS_OPTIONAL=1
+
+inherit autotools perl-module distutils-r1 toolchain-funcs flag-o-matic java-pkg-opt-2
+
+DESCRIPTION="Translator library for raster geospatial data formats (includes OGR support)"
+HOMEPAGE="https://gdal.org/"
+SRC_URI="https://download.osgeo.org/${PN}/${PV}/${P}.tar.gz"
+
+SLOT="0/2.3"
+LICENSE="BSD Info-ZIP MIT"
+KEYWORDS="~amd64 ~arm ~arm64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
+IUSE="armadillo +aux_xml curl debug doc fits geos gif gml hdf5 java jpeg jpeg2k lzma mdb mysql netcdf odbc ogdi opencl oracle pdf perl png postgres python spatialite sqlite threads webp xls zstd"
+
+COMMON_DEPEND="
+	dev-libs/expat
+	dev-libs/json-c:=
+	dev-libs/libpcre
+	dev-libs/libxml2:=
+	media-libs/tiff:0=
+	sci-libs/libgeotiff:=
+	sys-libs/zlib:=[minizip(+)]
+	armadillo? ( sci-libs/armadillo:=[lapack] )
+	curl? ( net-misc/curl )
+	fits? ( sci-libs/cfitsio:= )
+	geos? ( >=sci-libs/geos-2.2.1 )
+	gif? ( media-libs/giflib:= )
+	gml? ( >=dev-libs/xerces-c-3.1 )
+	hdf5? ( >=sci-libs/hdf5-1.6.4:=[szip] )
+	jpeg? ( virtual/jpeg:0= )
+	jpeg2k? ( media-libs/openjpeg:2= )
+	lzma? ( || (
+		app-arch/xz-utils
+		app-arch/lzma
+	) )
+	mdb? ( dev-java/jackcess:1 )
+	mysql? ( virtual/mysql )
+	netcdf? ( sci-libs/netcdf:= )
+	odbc? ( dev-db/unixODBC )
+	ogdi? ( sci-libs/ogdi )
+	opencl? ( virtual/opencl )
+	oracle? ( dev-db/oracle-instantclient:= )
+	pdf? ( app-text/poppler:= )
+	perl? ( dev-lang/perl:= )
+	png? ( media-libs/libpng:0= )
+	postgres? ( >=dev-db/postgresql-8.4:= )
+	python? (
+		${PYTHON_DEPS}
+		dev-python/numpy[${PYTHON_USEDEP}]
+	)
+	spatialite? ( dev-db/spatialite )
+	sqlite? ( dev-db/sqlite:3 )
+	webp? ( media-libs/libwebp:= )
+	xls? ( dev-libs/freexl )
+	zstd? ( app-arch/zstd:= )"
+
+RDEPEND="${COMMON_DEPEND}
+	java? ( >=virtual/jre-1.7:* )"
+
+DEPEND="${COMMON_DEPEND}
+	doc? ( app-doc/doxygen )
+	java? ( >=virtual/jdk-1.7:* )
+	perl? ( dev-lang/swig:0 )
+	python? (
+		dev-lang/swig:0
+		dev-python/setuptools[${PYTHON_USEDEP}]
+	)"
+
+REQUIRED_USE="
+	mdb? ( java )
+	python? ( ${PYTHON_REQUIRED_USE} )
+	spatialite? ( sqlite )
+"
+
+PATCHES=(
+	"${FILESDIR}/${PN}-2.2.3-soname.patch"
+	"${FILESDIR}/${PN}-2.2.3-bashcomp-path.patch" # bug 641866
+	"${FILESDIR}/${PN}-2.3.0-curl.patch" # bug 659840
+	"${FILESDIR}/${P}-poppler-0.75.patch"
+	"${FILESDIR}/${P}-poppler-0.76.patch"
+	"${FILESDIR}/${P}-swig-4.patch" # bug 689110
+)
+
+src_prepare() {
+	# fix datadir and docdir placement
+	sed -e "s:@datadir@:@datadir@/gdal:" \
+		-e "s:@exec_prefix@/doc:@exec_prefix@/share/doc/${PF}/html:g" \
+		-i "${S}"/GDALmake.opt.in || die
+
+	# the second sed expression should fix bug 371075
+	sed -e "s:setup.py install:setup.py install --root=\$(DESTDIR):" \
+		-e "s:--prefix=\$(DESTDIR):--prefix=:" \
+		-i "${S}"/swig/python/GNUmakefile || die
+
+	# Fix spatialite/sqlite include issue
+	sed -e 's:spatialite/sqlite3.h:sqlite3.h:g' \
+		-i ogr/ogrsf_frmts/sqlite/ogr_sqlite.h || die
+
+	# Fix freexl configure check
+	sed -e 's:FREEXL_LIBS=missing):FREEXL_LIBS=missing,-lm):g' \
+		-i configure.ac || die
+
+	sed -e "s: /usr/: \"${EPREFIX}\"/usr/:g" \
+		-i configure.ac || die
+
+	sed -e 's:^ar:$(AR):g' \
+		-i ogr/ogrsf_frmts/sdts/install-libs.sh || die
+
+	# updated for newer swig (must specify the path to input files)
+	sed -e "s: gdal_array.i: ../include/gdal_array.i:" \
+		-e "s:\$(DESTDIR)\$(prefix):\$(DESTDIR)\$(INST_PREFIX):g" \
+		-i swig/python/GNUmakefile || die "sed python makefile failed"
+	sed -e "s:library_dirs = :library_dirs = /usr/$(get_libdir):g" \
+		-i swig/python/setup.cfg || die "sed python setup.cfg failed"
+
+	default
+
+	eautoreconf
+}
+
+src_configure() {
+	# bug 619148
+	append-cxxflags -std=c++14
+
+	local myconf=(
+		# charls - not packaged in Gentoo ebuild repository
+		# kakadu, mrsid jp2mrsid - another jpeg2k stuff, ignore
+		# bsb - legal issues
+		# ingres - same story as oracle oci
+		# jasper - disabled because unmaintained and vulnerable; openjpeg will be used as JPEG-2000 provider instead
+		# podofo - we use poppler instead they are exclusive for each other
+		# tiff is a hard dep
+		--includedir="${EPREFIX}/usr/include/${PN}"
+		--disable-pdf-plugin
+		--disable-static
+		--enable-shared
+		--with-expat
+		--with-cryptopp=no
+		--with-geotiff
+		--with-grib
+		--with-hide-internal-symbols
+		--with-libjson-c="${EPREFIX}/usr/"
+		--with-libtiff
+		--with-libtool
+		--with-libz="${EPREFIX}/usr/"
+		--with-gnm
+		--without-bsb
+		--without-charls
+		--without-dods-root
+		--without-ecw
+		--without-epsilon
+		--without-fgdb
+		--without-fme
+		--without-gta
+		--without-grass
+		--without-hdf4
+		--without-idb
+		--without-ingres
+		--without-jasper
+		--without-jp2lura
+		--without-jp2mrsid
+		--without-kakadu
+		--without-kea
+		--without-libkml
+		--without-mongocxx
+		--without-mrsid
+		--without-mrsid_lidar
+		--without-msg
+		--without-mrf
+		--without-rasdaman
+		--without-rasterlite2
+		--without-pcraster
+		--without-pdfium
+		--without-podofo
+		--without-qhull
+		--without-sde
+		--without-sfcgal
+		--without-sosi
+		--without-teigha
+		--disable-lto
+		$(use_enable debug)
+		$(use_with armadillo)
+		$(use_with aux_xml pam)
+		$(use_with curl)
+		$(use_with fits cfitsio)
+		$(use_with geos)
+		$(use_with gif)
+		$(use_with gml xerces)
+		$(use_with hdf5)
+		$(use_with jpeg pcidsk) # pcidsk is internal, because there is no such library yreleased developer by gdal
+		$(use_with jpeg)
+		$(use_with jpeg2k openjpeg)
+		$(use_with lzma liblzma)
+		$(use_with mysql mysql "${EPREFIX}"/usr/bin/mysql_config)
+		$(use_with netcdf)
+		$(use_with oracle oci)
+		$(use_with odbc)
+		$(use_with ogdi ogdi "${EPREFIX}"/usr)
+		$(use_with opencl)
+		$(use_with pdf poppler)
+		$(use_with perl)
+		$(use_with png)
+		$(use_with postgres pg)
+		$(use_with python)
+		$(use_with spatialite)
+		$(use_with sqlite sqlite3 "${EPREFIX}"/usr)
+		$(use_with threads)
+		$(use_with webp)
+		$(use_with xls freexl)
+		$(use_with zstd)
+	)
+
+	tc-export AR RANLIB
+
+	if use java; then
+		myconf+=(
+			--with-java=$(java-config --jdk-home 2>/dev/null)
+			--with-jvm-lib=dlopen
+			$(use_with mdb)
+		)
+	else
+		myconf+=( --without-java --without-mdb )
+	fi
+
+	if use sqlite; then
+		append-libs -lsqlite3
+	fi
+
+	# bug #632660
+	if use ogdi; then
+		tc-export PKG_CONFIG
+		append-cflags $(${PKG_CONFIG} --cflags libtirpc)
+		append-cxxflags $(${PKG_CONFIG} --cflags libtirpc)
+	fi
+
+	ECONF_SOURCE="${S}" econf "${myconf[@]}"
+
+	# mysql-config puts this in (and boy is it a PITA to get it out)
+	if use mysql; then
+		sed -e "s: -rdynamic : :" \
+			-i GDALmake.opt || die "sed LIBS failed"
+	fi
+}
+
+src_compile() {
+	if use perl; then
+		rm "${S}"/swig/perl/*_wrap.cpp || die
+		emake -C "${S}"/swig/perl generate
+	fi
+
+	# gdal-config needed before generating Python bindings
+	default
+
+	if use perl ; then
+		pushd "${S}"/swig/perl > /dev/null || die
+		perl-module_src_configure
+		perl-module_src_compile
+		popd > /dev/null || die
+	fi
+
+	if use python; then
+		rm -f "${S}"/swig/python/*_wrap.cpp || die
+		emake -C "${S}"/swig/python generate
+		pushd "${S}"/swig/python > /dev/null || die
+		distutils-r1_src_compile
+		popd > /dev/null || die
+	fi
+
+	use doc && emake docs
+}
+
+src_install() {
+	if use perl ; then
+		pushd "${S}"/swig/perl > /dev/null || die
+		myinst=( DESTDIR="${D}" )
+		perl-module_src_install
+		popd > /dev/null || die
+		sed -e 's:BINDINGS        =       \(.*\) perl:BINDINGS        =       \1:g' \
+			-i GDALmake.opt || die
+	fi
+
+	use perl && perl_delete_localpod
+
+	local DOCS=( Doxyfile HOWTO-RELEASE NEWS )
+	use doc && HTML_DOCS=( html/. )
+
+	default
+
+	python_install() {
+		distutils-r1_python_install
+		python_doscript scripts/*.py
+	}
+
+	if use python; then
+		# Don't clash with gdal's docs
+		unset DOCS HTML_DOCS
+
+		pushd "${S}"/swig/python > /dev/null || die
+		distutils-r1_src_install
+		popd > /dev/null || die
+
+		newdoc swig/python/README.txt README-python.txt
+
+		insinto /usr/share/${PN}/samples
+		doins -r swig/python/samples/
+	fi
+
+	doman "${S}"/man/man*/*
+	find "${ED}" -name '*.la' -delete || die
+}
+
+pkg_postinst() {
+	elog "Check available image and data formats after building with"
+	elog "gdalinfo and ogrinfo (using the --formats switch)."
+}