gentoo resync : 30.06.2019

8 files changed, 388 insertions, 0 deletions

diff --git a/sci-libs/blis/Manifest b/sci-libs/blis/Manifest
new file mode 100644
index 000000000000..41b80f4c7060
--- /dev/null
+++ b/sci-libs/blis/Manifest
@@ -0,0 +1,8 @@
+AUX blas.lds 204 BLAKE2B 0e24237d75a95258e8e8bb6880fa8e5ecf0b59c15d03ed94af2a75f59c13d3ac6b81e630fe488a07eea5f738664604b3e7720ebc4d1865959c05d26d367d6294 SHA512 bfe176f5a707e3698d78983fc71e9bbb36bb433584b4abdb8add9bde2ae9d159c861f3662a3d8caa6f412a3acfda243f6d8ca650f596d2d444fe77cc5df10672
+AUX blis-0.5.2-blas-provider.patch 581 BLAKE2B bde52a363fa6a7b26da98ae6cf8af06311bd9fe2f5729d1759621238cc33437abb9b0fbf01d80a6f6a80a7871fd687e9fe047efcb8cc05c5a3cdc0cdf7e4a7d9 SHA512 e291becb8f5b99a11b75779f7a549681fb38cf04fe15516225caadf2672dda8ed5db9e24030c5cd3c261f5fc2b6d96d7e078aa9076e3fd46dfce39afc5681515
+AUX blis-0.5.2-gh313.patch 8758 BLAKE2B 52c3ed408b231070a4301b423652076f8d9b13ef570f9313b5705802d1faa0bec412e47bf30b34b6c0f7a9b71c1f5134562c13f41bdf84ac5074ab5f1d59b533 SHA512 d72f85b879f7768c5f6b166b288b974a6767d757fdb8c46e5e8a970a27ca45cf4dbab79e716ecb75dda49ef4e0675b8dffa94924bdc2f554dbe3a3ca16d2f12b
+AUX blis-0.5.2-rpath.patch 384 BLAKE2B f5a0390384d30d2929fcb5ff22424770dc3b6a4b9e3796b675a0237d9a1971c358463d5a98aee2f4851396b81b85f67d49e8015e94ce433d2b3a6f7f17e54b15 SHA512 626acf971adfdcee9d8578283f64f2e4e5dad14da4a6d38b7198635c775823312b54cd1b11e3f4a79e79716358f1f4260d5b88be74705ae6ec4eb3fd4ce2723a
+AUX cblas.lds 205 BLAKE2B ab2c41b571dbb9b55e36fa5afe4344ed9ef33454f6b7a5cda0726aa7f98a61dcef3065976cc02ab593aad94c5d6c0a23efce726da30673bd06cf57b64e826b93 SHA512 23008248e2b2c221a9ce36c2aca3e2acf58a6d434ffde498a058689af5d16d6e87ab56900508bb0403c5f5a1fc9366b202a7fc44a42d04c409197ec1ec164408
+DIST blis-0.5.2.tar.gz 3502383 BLAKE2B b09fda20711086c8bde0d4efc3f3c9b0f6072e1ddb8bd2846465877f0353cced27548abe1239b6a042fe655e85e4b7b3c960322e39b2c733866b8e17777718bd SHA512 4f91a7834ef0ed39544dd21856814467416a222240050cca323917b0fc61b9201ae4dbd109aa687cdecb27ddee5d6bf4510ef023e1c1dc73599faef0482d3d04
+EBUILD blis-0.5.2.ebuild 2644 BLAKE2B 36eef678828a8ab810dba3a88b9ab3cb9cee35c2c9c7c026d1ceca827aca60a9f9140d8d0d301b892da958c1ad2bd3027ab7642d3f5d08a964fd623660042004 SHA512 5b85048a750e9205c86c6d1e3ede935318622d3b393052f623c22933d82d5ec6098dd3204956fd7f9224b97a7399160bfef3e0185987a64c092a7d5065384ae3
+MISC metadata.xml 1489 BLAKE2B a14d1a33ee756a4706e1a4d93eaad65add9a040164a0c65408f0c62d1c705dee2a32df31990ee4ee58e25b31e352e55cdd27f28ebf62e10316f2e36dc7c2dbfc SHA512 5d948c8507816cf9a6ae36b3c08772b347e37bf52deea1ec11a7f362439da503e9773c7727ff1f7d9f17567c65bae5b2de1627507853064a8dc3fd7cc1f8b60b
diff --git a/sci-libs/blis/blis-0.5.2.ebuild b/sci-libs/blis/blis-0.5.2.ebuild
new file mode 100644
index 000000000000..939d0b608d65
--- /dev/null
+++ b/sci-libs/blis/blis-0.5.2.ebuild
@@ -0,0 +1,107 @@
+# Copyright 2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+inherit eutils
+
+DESCRIPTION="BLAS-like Library Instantiation Software Framework"
+HOMEPAGE="https://github.com/flame/blis"
+SRC_URI="https://github.com/flame/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc64 ~x86"
+IUSE="openmp pthread serial static-libs eselect-ldso doc 64bit-index"
+REQUIRED_USE="?? ( openmp pthread serial ) ?? ( eselect-ldso 64bit-index )"
+
+RDEPEND="eselect-ldso? ( !app-eselect/eselect-cblas
+				   >=app-eselect/eselect-blas-0.2 )"
+
+DEPEND="${RDEPEND}
+	dev-lang/python
+"
+
+PATCHES=(
+	"${FILESDIR}/${P}-rpath.patch"
+	"${FILESDIR}/${P}-blas-provider.patch"
+	"${FILESDIR}/${P}-gh313.patch"
+)
+
+src_configure () {
+	local BLIS_FLAGS=()
+	local confname
+	# determine flags
+	if use openmp; then
+		BLIS_FLAGS+=( -t openmp )
+	elif use pthread; then
+		BLIS_FLAGS+=( -t pthreads )
+	else
+		BLIS_FLAGS+=( -t no )
+	fi
+	use 64bit-index && BLIS_FLAGS+=( -b 64 -i 64 )
+	# determine config name
+	case "${ARCH}" in
+		"x86" | "amd64")
+			confname=auto ;;
+		"ppc64")
+			confname=generic ;;
+		*)
+			confname=generic ;;
+	esac
+	# This is not an autotools configure file. We don't use econf here.
+	./configure \
+		--enable-verbose-make \
+		--prefix="${BROOT}"/usr \
+		--libdir="${BROOT}"/usr/$(get_libdir) \
+		$(use_enable static-libs static) \
+		--enable-blas \
+		--enable-cblas \
+		${BLIS_FLAGS[@]} \
+		--enable-shared \
+		$confname || die
+}
+
+src_compile() {
+	DEB_LIBBLAS=libblas.so.3 DEB_LIBCBLAS=libcblas.so.3 \
+		LDS_BLAS="${FILESDIR}"/blas.lds LDS_CBLAS="${FILESDIR}"/cblas.lds \
+		default
+}
+
+src_test () {
+	emake check
+}
+
+src_install () {
+	default
+	use doc && dodoc README.md docs/*.md
+
+	if use eselect-ldso; then
+		dodir /usr/$(get_libdir)/blas/blis
+		insinto /usr/$(get_libdir)/blas/blis
+		doins lib/*/lib{c,}blas.so.3
+		dosym libblas.so.3 usr/$(get_libdir)/blas/blis/libblas.so
+		dosym libcblas.so.3 usr/$(get_libdir)/blas/blis/libcblas.so
+	fi
+}
+
+pkg_postinst() {
+	use eselect-ldso || return
+
+	local libdir=$(get_libdir) me="blis"
+
+	# check blas
+	eselect blas add ${libdir} "${EROOT}"/usr/${libdir}/blas/${me} ${me}
+	local current_blas=$(eselect blas show ${libdir})
+	if [[ ${current_blas} == blis || -z ${current_blas} ]]; then
+		eselect blas set ${libdir} ${me}
+		elog "Current eselect: BLAS/CBLAS ($libdir) -> [${current_blas}]."
+	else
+		elog "Current eselect: BLAS/CBLAS ($libdir) -> [${current_blas}]."
+		elog "To use blas [${me}] implementation, you have to issue (as root):"
+		elog "\t eselect blas set ${libdir} ${me}"
+	fi
+}
+
+pkg_postrm() {
+	use eselect-ldso && eselect blas validate
+}
diff --git a/sci-libs/blis/files/blas.lds b/sci-libs/blis/files/blas.lds
new file mode 100644
index 000000000000..db79d3bc9054
--- /dev/null
+++ b/sci-libs/blis/files/blas.lds
@@ -0,0 +1,15 @@
+{
+  # Export BLAS symbols
+  global:
+    *_;
+    RowMajorStrg;
+
+  # Hide everything else.
+  local:
+    cblas_*;
+    CBLAS_*;
+    bli_thread_set_num_threads_;
+    bli_thread_set_ways_;
+    bli_*;
+    *;
+};
diff --git a/sci-libs/blis/files/blis-0.5.2-blas-provider.patch b/sci-libs/blis/files/blis-0.5.2-blas-provider.patch
new file mode 100644
index 000000000000..5999f847929c
--- /dev/null
+++ b/sci-libs/blis/files/blis-0.5.2-blas-provider.patch
@@ -0,0 +1,13 @@
+diff --git a/Makefile b/Makefile
+index 2d31fee..7008682 100644
+--- a/Makefile
++++ b/Makefile
+@@ -659,6 +659,8 @@ else
+ 	@$(LINKER) $(SOFLAGS) -o $(LIBBLIS_SO_OUTPUT_NAME) $? $(LDFLAGS)
+ endif
+ endif
++	$(LINKER) $(SOFLAGS) -o $(BASE_LIB_PATH)/$(DEB_LIBBLAS) $? $(LDFLAGS) -Wl,--soname,$(DEB_LIBBLAS) -Wl,--version-script=$(LDS_BLAS)
++	$(LINKER) $(SOFLAGS) -o $(BASE_LIB_PATH)/$(DEB_LIBCBLAS) $? $(LDFLAGS) -Wl,--soname,$(DEB_LIBCBLAS) -Wl,--version-script=$(LDS_CBLAS)
+ 
+ # Local symlink for shared library.
+ # NOTE: We use a '.loc' suffix to avoid filename collisions in case this
diff --git a/sci-libs/blis/files/blis-0.5.2-gh313.patch b/sci-libs/blis/files/blis-0.5.2-gh313.patch
new file mode 100644
index 000000000000..fab3a8a09ee3
--- /dev/null
+++ b/sci-libs/blis/files/blis-0.5.2-gh313.patch
@@ -0,0 +1,187 @@
+diff --git a/common.mk b/common.mk
+index 5513098a5..999df774b 100644
+--- a/common.mk
++++ b/common.mk
+@@ -118,7 +118,8 @@ get-noopt-cxxflags-for   = $(strip $(CFLAGS_PRESET) \
+ get-refinit-cflags-for   = $(strip $(call load-var-for,COPTFLAGS,$(1)) \
+                                    $(call get-noopt-cflags-for,$(1)) \
+                                    -DBLIS_CNAME=$(1) \
+-                                   $(BUILD_FLAGS) \
++                                   $(BUILD_CPPFLAGS) \
++                                   $(BUILD_SYMFLAGS) \
+                             )
+ 
+ get-refkern-cflags-for   = $(strip $(call load-var-for,CROPTFLAGS,$(1)) \
+@@ -126,23 +127,27 @@ get-refkern-cflags-for   = $(strip $(call load-var-for,CROPTFLAGS,$(1)) \
+                                    $(call get-noopt-cflags-for,$(1)) \
+                                    $(COMPSIMDFLAGS) \
+                                    -DBLIS_CNAME=$(1) \
+-                                   $(BUILD_FLAGS) \
++                                   $(BUILD_CPPFLAGS) \
++                                   $(BUILD_SYMFLAGS) \
+                             )
+ 
+ get-config-cflags-for    = $(strip $(call load-var-for,COPTFLAGS,$(1)) \
+                                    $(call get-noopt-cflags-for,$(1)) \
+-                                   $(BUILD_FLAGS) \
++                                   $(BUILD_CPPFLAGS) \
++                                   $(BUILD_SYMFLAGS) \
+                             )
+ 
+ get-frame-cflags-for     = $(strip $(call load-var-for,COPTFLAGS,$(1)) \
+                                    $(call get-noopt-cflags-for,$(1)) \
+-                                   $(BUILD_FLAGS) \
++                                   $(BUILD_CPPFLAGS) \
++                                   $(BUILD_SYMFLAGS) \
+                             )
+ 
+ get-kernel-cflags-for    = $(strip $(call load-var-for,CKOPTFLAGS,$(1)) \
+                                    $(call load-var-for,CKVECFLAGS,$(1)) \
+                                    $(call get-noopt-cflags-for,$(1)) \
+-                                   $(BUILD_FLAGS) \
++                                   $(BUILD_CPPFLAGS) \
++                                   $(BUILD_SYMFLAGS) \
+                             )
+ 
+ # When compiling sandboxes, we use flags similar to those of general framework
+@@ -153,19 +158,24 @@ get-kernel-cflags-for    = $(strip $(call load-var-for,CKOPTFLAGS,$(1)) \
+ get-sandbox-c99flags-for = $(strip $(call load-var-for,COPTFLAGS,$(1)) \
+                                    $(call get-noopt-cflags-for,$(1)) \
+                                    $(CSBOXINCFLAGS) \
+-                                   $(BUILD_FLAGS) \
++                                   $(BUILD_CPPFLAGS) \
++                                   $(BUILD_SYMFLAGS) \
+                             )
+ get-sandbox-cxxflags-for = $(strip $(call load-var-for,COPTFLAGS,$(1)) \
+                                    $(call get-noopt-cxxflags-for,$(1)) \
+                                    $(CSBOXINCFLAGS) \
+-                                   $(BUILD_FLAGS) \
++                                   $(BUILD_CPPFLAGS) \
++                                   $(BUILD_SYMFLAGS) \
+                             )
+ 
+ # Define a separate function that will return appropriate flags for use by
+ # applications that want to use the same basic flags as those used when BLIS
+-# was compiled. (This is the same as get-frame-cflags-for(), except that it
+-# omits the BUILD_FLAGS, which are exclusively for use when BLIS is being
+-# compiled.)
++# was compiled. (NOTE: This is the same as the $(get-frame-cflags-for ...)
++# function, except that it omits two variables that contain flags exclusively
++# for use when BLIS is being compiled/built: BUILD_CPPFLAGS, which contains a
++# cpp macro that confirms that BLIS is being built; and BUILD_SYMFLAGS, which
++# contains symbol export flags that are only needed when a shared library is
++# being compiled/linked.)
+ get-user-cflags-for      = $(strip $(call load-var-for,COPTFLAGS,$(1)) \
+                                    $(call get-noopt-cflags-for,$(1)) \
+                             )
+@@ -627,22 +637,26 @@ $(foreach c, $(CONFIG_LIST_FAM), $(eval $(call append-var-for,CPICFLAGS,$(c))))
+ 
+ # --- Symbol exporting flags (shared libraries only) ---
+ 
++# NOTE: These flags are only applied when building BLIS and not used by
++# applications that import BLIS compilation flags via the
++# $(get-user-cflags-for ...) function.
++
+ # Determine default export behavior / visibility of symbols for gcc.
+ ifeq ($(CC_VENDOR),gcc)
+ ifeq ($(IS_WIN),yes)
+ ifeq ($(EXPORT_SHARED),all)
+-CMISCFLAGS := -Wl,--export-all-symbols, -Wl,--enable-auto-import
++BUILD_SYMFLAGS := -Wl,--export-all-symbols, -Wl,--enable-auto-import
+ else # ifeq ($(EXPORT_SHARED),public)
+-CMISCFLAGS := -Wl,--exclude-all-symbols
++BUILD_SYMFLAGS := -Wl,--exclude-all-symbols
+ endif
+ else # ifeq ($(IS_WIN),no)
+ ifeq ($(EXPORT_SHARED),all)
+ # Export all symbols by default.
+-CMISCFLAGS := -fvisibility=default
++BUILD_SYMFLAGS := -fvisibility=default
+ else # ifeq ($(EXPORT_SHARED),public)
+ # Hide all symbols by default and export only those that have been annotated
+ # as needing to be exported.
+-CMISCFLAGS := -fvisibility=hidden
++BUILD_SYMFLAGS := -fvisibility=hidden
+ endif
+ endif
+ endif
+@@ -653,11 +667,11 @@ endif
+ ifeq ($(CC_VENDOR),icc)
+ ifeq ($(EXPORT_SHARED),all)
+ # Export all symbols by default.
+-CMISCFLAGS := -fvisibility=default
++BUILD_SYMFLAGS := -fvisibility=default
+ else # ifeq ($(EXPORT_SHARED),public)
+ # Hide all symbols by default and export only those that have been annotated
+ # as needing to be exported.
+-CMISCFLAGS := -fvisibility=hidden
++BUILD_SYMFLAGS := -fvisibility=hidden
+ endif
+ endif
+ 
+@@ -667,27 +681,25 @@ ifeq ($(IS_WIN),yes)
+ ifeq ($(EXPORT_SHARED),all)
+ # NOTE: clang on Windows does not appear to support exporting all symbols
+ # by default, and therefore we ignore the value of EXPORT_SHARED.
+-CMISCFLAGS :=
++BUILD_SYMFLAGS :=
+ else # ifeq ($(EXPORT_SHARED),public)
+ # NOTE: The default behavior of clang on Windows is to hide all symbols
+ # and only export functions and other declarations that have beenannotated
+ # as needing to be exported.
+-CMISCFLAGS :=
++BUILD_SYMFLAGS :=
+ endif
+ else # ifeq ($(IS_WIN),no)
+ ifeq ($(EXPORT_SHARED),all)
+ # Export all symbols by default.
+-CMISCFLAGS := -fvisibility=default
++BUILD_SYMFLAGS := -fvisibility=default
+ else # ifeq ($(EXPORT_SHARED),public)
+ # Hide all symbols by default and export only those that have been annotated
+ # as needing to be exported.
+-CMISCFLAGS := -fvisibility=hidden
++BUILD_SYMFLAGS := -fvisibility=hidden
+ endif
+ endif
+ endif
+ 
+-$(foreach c, $(CONFIG_LIST_FAM), $(eval $(call append-var-for,CMISCFLAGS,$(c))))
+-
+ # --- Language flags ---
+ 
+ # Enable C99.
+@@ -1026,7 +1038,7 @@ VERS_DEF       := -DBLIS_VERSION_STRING=\"$(VERSION)\"
+ # Define a C preprocessor flag that is *only* defined when BLIS is being
+ # compiled. (In other words, an application that #includes blis.h will not
+ # get this cpp macro.)
+-BUILD_FLAGS    := -DBLIS_IS_BUILDING_LIBRARY
++BUILD_CPPFLAGS := -DBLIS_IS_BUILDING_LIBRARY
+ 
+ 
+ 
+diff --git a/configure b/configure
+index 5b5695cd5..bb21671f0 100755
+--- a/configure
++++ b/configure
+@@ -152,13 +152,13 @@ print_usage()
+ 	echo "                 functions and variables that belong to public APIs are"
+ 	echo "                 exported in shared libraries. However, the user may"
+ 	echo "                 instead export all symbols in BLIS, even those that were"
+-	echo "                 intended for internal use only. Note Note that the public"
+-	echo "                 APIs encompass all functions that almost any user would"
+-	echo "                 ever want to call, including the BLAS/CBLAS compatibility"
+-	echo "                 APIs as well as the basic and expert interfaces to the"
+-	echo "                 typed and object APIs that are unique to BLIS. Also note"
+-	echo "                 that changing this option to 'all' will have no effect in"
+-	echo "                 some environments, such as when compiling with clang on"
++	echo "                 intended for internal use only. Note that the public APIs"
++	echo "                 encompass all functions that almost any user would ever"
++	echo "                 want to call, including the BLAS/CBLAS compatibility APIs"
++	echo "                 as well as the basic and expert interfaces to the typed"
++	echo "                 and object APIs that are unique to BLIS. Also note that"
++	echo "                 changing this option to 'all' will have no effect in some"
++	echo "                 environments, such as when compiling with clang on"
+ 	echo "                 Windows."
+ 	echo " "
+ 	echo "   -t MODEL, --enable-threading[=MODEL], --disable-threading"
diff --git a/sci-libs/blis/files/blis-0.5.2-rpath.patch b/sci-libs/blis/files/blis-0.5.2-rpath.patch
new file mode 100644
index 000000000000..a8b5a46870d1
--- /dev/null
+++ b/sci-libs/blis/files/blis-0.5.2-rpath.patch
@@ -0,0 +1,13 @@
+diff --git a/common.mk b/common.mk
+index ef0acfb..e1ce31d 100644
+--- a/common.mk
++++ b/common.mk
+@@ -527,7 +527,7 @@ LIBBLIS_L      := $(LIBBLIS_SO)
+ LIBBLIS_LINK   := $(LIBBLIS_SO_PATH)
+ ifeq ($(IS_WIN),no)
+ # For Linux and OS X: set rpath property of shared object.
+-LDFLAGS        += -Wl,-rpath,$(BASE_LIB_PATH)
++#LDFLAGS        += -Wl,-rpath,$(BASE_LIB_PATH)
+ endif
+ endif
+ endif
diff --git a/sci-libs/blis/files/cblas.lds b/sci-libs/blis/files/cblas.lds
new file mode 100644
index 000000000000..18ec172028ca
--- /dev/null
+++ b/sci-libs/blis/files/cblas.lds
@@ -0,0 +1,15 @@
+{
+  # Export CBLAS symbols
+  global:
+    cblas_*;
+    CBLAS_*;
+    RowMajorStrg;
+
+  # Hide everything else.
+  local:
+    bli_thread_set_num_threads_;
+    bli_thread_set_ways_;
+    bli_*;
+    *_;
+    *;
+};
diff --git a/sci-libs/blis/metadata.xml b/sci-libs/blis/metadata.xml
new file mode 100644
index 000000000000..a27c6853409d
--- /dev/null
+++ b/sci-libs/blis/metadata.xml
@@ -0,0 +1,30 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <upstream>
+    <bugs-to>https://github.com/flame/blis/issues/</bugs-to>
+    <doc>https://github.com/flame/blis</doc>
+  </upstream>
+  <maintainer type="project">
+    <name>Mo Zhou</name>
+    <email>lumin@debian.org</email>
+  </maintainer>
+  <longdescription>
+    BLIS is a portable software framework for instantiating high-performance
+    BLAS-like dense linear algebra libraries. The framework was designed to
+    isolate essential kernels of computation that, when optimized, immediately
+    enable optimized implementations of most of its commonly used and
+    computationally intensive operations. BLIS is written in ISO C99 and
+    available under a new/modified/3-clause BSD license. While BLIS exports a
+    new BLAS-like API, it also includes a BLAS compatibility layer which gives
+    application developers access to BLIS implementations via traditional BLAS
+    routine calls. An object-based API unique to BLIS is also available.
+  </longdescription>
+  <use>
+    <flag name="openmp">Use openmp threadding model</flag>
+    <flag name="pthread">Use pthread threadding model</flag>
+    <flag name="serial">Use no threadding model</flag>
+    <flag name="eselect-ldso">Enable runtime library switching by eselect and ld.so.</flag>
+    <flag name="64bit-index">Enable 64bit array indexing, incompatible with runtime switching</flag>
+  </use>
+</pkgmetadata>