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author | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
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committer | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
commit | 4f2d7949f03e1c198bc888f2d05f421d35c57e21 (patch) | |
tree | ba5f07bf3f9d22d82e54a462313f5d244036c768 /sci-chemistry/theseus/theseus-3.0.0.ebuild |
reinit the tree, so we can have metadata
Diffstat (limited to 'sci-chemistry/theseus/theseus-3.0.0.ebuild')
-rw-r--r-- | sci-chemistry/theseus/theseus-3.0.0.ebuild | 69 |
1 files changed, 69 insertions, 0 deletions
diff --git a/sci-chemistry/theseus/theseus-3.0.0.ebuild b/sci-chemistry/theseus/theseus-3.0.0.ebuild new file mode 100644 index 000000000000..9eebccc8bc96 --- /dev/null +++ b/sci-chemistry/theseus/theseus-3.0.0.ebuild @@ -0,0 +1,69 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit multilib toolchain-funcs + +DESCRIPTION="Maximum likelihood superpositioning and analysis of macromolecular structures" +HOMEPAGE="http://www.theseus3d.org/" +SRC_URI="http://www.theseus3d.org/src/${PN}_${PV}.tar.gz" + +SLOT="0" +LICENSE="GPL-3" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples" + +RDEPEND=" + sci-libs/gsl + || ( + sci-biology/muscle + sci-biology/probcons + sci-biology/mafft + sci-biology/t-coffee + sci-biology/kalign + sci-biology/clustalw:2 + )" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +S="${WORKDIR}"/${PN}_src/ + +src_prepare() { + cat >> make.inc <<- EOF + ARCH = $(tc-getAR) + ARCHFLAGS = -rvs + RANLIB = $(tc-getRANLIB) + LOCALLIBDIR = "${EPREFIX}/usr/$(get_libdir) + SYSLIBS = $(pkg-config --libs gsl) -lpthread + LIBS = -ldistfit -lmsa -ldssplite -ldltmath -lDLTutils -ltheseus + LIBDIR = -L./lib + INSTALLDIR = "${ED}"/usr/bin + OPT = + WARN = + CFLAGS = ${CFLAGS} -std=c11 \$(WARN) + CC = $(tc-getCC) + EOF + + sed \ + -e 's|theseus:|theseus: libs|g' \ + -e '/-o theseus/s:$(CC):$(CC) ${LDFLAGS}:g' \ + -i Makefile || die + + sed \ + -e 's:/usr/bin/sed:sed:g' \ + -e "s:/usr/local/bin/:/usr/bin/:g" \ + -e "s:/usr/bin/:${EPREFIX}/usr/bin/:g" \ + -i theseus_align || die +} + +src_compile () { + emake ltheseus + default +} + +src_install() { + dobin theseus theseus_align + dodoc theseus_man.pdf README AUTHORS + use examples && insinto /usr/share/${PN} && doins -r examples +} |