diff options
author | V3n3RiX <venerix@redcorelinux.org> | 2020-02-05 18:44:56 +0000 |
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committer | V3n3RiX <venerix@redcorelinux.org> | 2020-02-05 18:44:56 +0000 |
commit | 29aabba0ea759c6a2864ff5631735b67ee38e5e0 (patch) | |
tree | ab466b4dfa7abecb401b2f8039d08af4689306bb /sci-chemistry/pymol | |
parent | d42200bec37eef2a7478d88988ff00addd0a9202 (diff) |
gentoo resync : 05.02.2020
Diffstat (limited to 'sci-chemistry/pymol')
-rw-r--r-- | sci-chemistry/pymol/Manifest | 2 | ||||
-rw-r--r-- | sci-chemistry/pymol/pymol-1.8.4.0-r2.ebuild | 111 |
2 files changed, 0 insertions, 113 deletions
diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest index 3b769d6a6826..7948415a7bf8 100644 --- a/sci-chemistry/pymol/Manifest +++ b/sci-chemistry/pymol/Manifest @@ -1,6 +1,4 @@ DIST pymol-1.8.4.0.png.xz 19528 BLAKE2B f3d23d4cedca3d8bb96b20646a548da4be570697e3346a11b01c5c3599b536ba4697be08472dfa8a4f6533167defc1a37a1de332931a73857319cb28fd42cd2b SHA512 40bb0d3f226476f6e047b5361956aad955232a97641474765eaa5204f0539aee3810e0266213618a45364f9f31f6eb18380b17e0c79f64065f7b62a9016caa7c DIST pymol-2.3.0.tar.gz 10448674 BLAKE2B 0d508587d880ce7f2e8a0481bf664e6bfe6eb1d68b0f48b9266cde756824bd8c0144d7243e958bbc5e571d60fca9dafff125d81a8a3d32107e78ad2ff8dffc05 SHA512 e1dcea1c97bcd9045d3543e92902f240e6affbf61a38e8d2a0be04309e3dbabfe1a869847d1423b3151008978d4c305bbf3ce994fc9d453c0063ce020100c133 -DIST pymol-v1.8.4.0.tar.bz2 8717344 BLAKE2B a4cfb95eb40a3cd3da5b8cfd4acac7255997f9a3e49ef7e7e1d4c13f36e4aace462a054c326bbaadbc99f22286be878a6d5c518149760b5c939ce9362d4b8cc3 SHA512 73a810adfc31adaf0f3fa25512084882c87b0782c8af716ac0203a5b5b7f0b9fedfbce3d129bffef7b52044e92b0542e683966b2acf961c4dac17fbba72dd7fe -EBUILD pymol-1.8.4.0-r2.ebuild 3062 BLAKE2B 98914bfee561a1f5970ca47180ae5a23ac9c547069bfa421041c4e19eaff9820ab148038406971ac8e79801f99fdd92f90e7be5249081ba1be200451efb92f30 SHA512 69714e4d11ab56af06fee425e23659b9855e2f8e39293888a57720e6c1f4dad8f823cb77f203f7bb55f3b402f899e810c73af150106621c2e8ee6cd0c4250e5f EBUILD pymol-2.3.0-r2.ebuild 3190 BLAKE2B a72434867a8589dda7a334f71e1aaa58f16d3caea1eb1615c44c2b813b1d0b84ed308369eb89c45251daf7bfbabed470e7d5abe42334b3fe28b484217fa29653 SHA512 5c2d08baa9407a2abe733d1753e622ea450b7c939b4f57d8e47adb5f57ac5a5e2b95264b6876698c70a5af926d378d75b6ba4ae02c85affbcfda7327d718ea14 MISC metadata.xml 439 BLAKE2B 68df7dfc8ca3d4d4b18b419532bade69491f2e9362f10ae2397c804132b7fc9cd08dcf9703c0a89c44588c570e0c0c1bb9bffb7394d51faf1283142dbc5f70b3 SHA512 f5a3eded9b12fa715ba2e6e10b41c75d9bd823ca0dd40acbffc3f5bfc4b36c687f720b1a4e119b4540a31faf849985778cbd72b0b2cd35af8c52ca0f808d71e4 diff --git a/sci-chemistry/pymol/pymol-1.8.4.0-r2.ebuild b/sci-chemistry/pymol/pymol-1.8.4.0-r2.ebuild deleted file mode 100644 index f60de8dcb189..000000000000 --- a/sci-chemistry/pymol/pymol-1.8.4.0-r2.ebuild +++ /dev/null @@ -1,111 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="tk" - -inherit distutils-r1 eutils fdo-mime flag-o-matic versionator - -DESCRIPTION="A Python-extensible molecular graphics system" -HOMEPAGE="https://www.pymol.org/" -SRC_URI=" - https://dev.gentoo.org/~jlec/distfiles/${P}.png.xz - mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2 - " -# git archive -v --prefix=${P}/ master -o ${P}.tar.xz -RESTRICT="mirror" -LICENSE="PSF-2.2" -SLOT="0" -KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" -IUSE="web" - -DEPEND=" - || ( - dev-python/numpy-python2[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - ) - dev-python/pmw:py2[${PYTHON_USEDEP}] - dev-python/pyopengl[${PYTHON_USEDEP}] - media-libs/freeglut - media-libs/freetype:2 - media-libs/glew:0= - media-libs/libpng:0= - media-video/mpeg-tools - sys-libs/zlib - !sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] - web? ( !dev-python/webpy[${PYTHON_USEDEP}] )" -RDEPEND="${DEPEND}" - -S="${WORKDIR}"/${PN} - -python_prepare_all() { - sed \ - -e "s:\"/usr:\"${EPREFIX}/usr:g" \ - -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \ - -e "/import/s:argparse:argparseX:g" \ - -i setup.py || die - - sed \ - -e "s:/opt/local:${EPREFIX}/usr:g" \ - -e '/ext_comp_args/s:\[.*\]:[]:g' \ - -i setup.py || die - - append-cxxflags -std=c++0x - - distutils-r1_python_prepare_all -} - -python_install() { - distutils-r1_python_install --pymol-path="${EPREFIX}/usr/share/pymol" - - sed \ - -e '1d' \ - -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" \ - -e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \ - -e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \ - -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die -} - -python_install_all() { - distutils-r1_python_install_all - - sed \ - -e '1i#!/usr/bin/env python' \ - "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die - - python_foreach_impl python_doscript "${T}"/${PN} - - # These environment variables should not go in the wrapper script, or else - # it will be impossible to use the PyMOL libraries from Python. - cat >> "${T}"/20pymol <<- EOF - PYMOL_PATH="${EPREFIX}/usr/share/pymol" - PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" - PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" - EOF - - doenvd "${T}"/20pymol - - newicon "${WORKDIR}"/${P}.png ${PN}.png - make_desktop_entry ${PN} PyMol ${PN} \ - "Graphics;Education;Science;Chemistry;" \ - "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;" - - if ! use web; then - rm -rf "${D}/$(python_get_sitedir)/web" || die - fi - - rm -f "${ED}"/usr/share/${PN}/LICENSE || die -} - -pkg_postinst() { - fdo-mime_desktop_database_update - fdo-mime_mime_database_update - optfeature "Electrostatic calculations" sci-chemistry/apbs sci-chemistry/pdb2pqr -} - -pkg_postrm() { - fdo-mime_desktop_database_update - fdo-mime_mime_database_update -} |