gentoo resync : 22.10.2018

4 files changed, 0 insertions, 225 deletions

diff --git a/sci-chemistry/openbabel-perl/Manifest b/sci-chemistry/openbabel-perl/Manifest
index 3a0ffb6f92bb..079b42b9f50f 100644
--- a/sci-chemistry/openbabel-perl/Manifest
+++ b/sci-chemistry/openbabel-perl/Manifest
@@ -1,8 +1,4 @@
-AUX openbabel-perl-2.3.2-bindings_only.patch 4557 BLAKE2B 3549bc5f6d0c02ace76d8f26e5669c83ea6dc1912f28433bec54f837c2a8276ee243f4311fd65766b0e5af4bb5d6a6a627ba5ef42c0aa919d842c945aa6db9bc SHA512 475600513f188f2e3dee711ab2073954511b7d71c0af222dc9fe121bcbd4821d0ab32934d5035452ad4820d0dd750899995696c20504769b25cad7ef2d27aa5e
 AUX openbabel-perl-2.3.2-gcc-6_and_7-backport.patch 635 BLAKE2B 4e98dedd149b14d5bb02fb6d2fa03e07242d100c7b41f36f749ff3d587080eeca44aa26ca095d31e0309e45f3780b67deaa97f1177ed35a9b7407bd7c33f78ff SHA512 e1b4402f34d01ced5b4caaa184b4e5544cf47893cfe7958054052b05a57dc34b4d44239a212c7d909f29b9366b83b6df74993f844a20f23748c01272ec093081
-AUX openbabel-perl-2.3.2-trunk_cmake.patch 2335 BLAKE2B 5e829c555d8a06bf9524b5008c21dfd6830b1c95a40834f248d4b4d875fcd8cd64f664ab93a5f37f614201c106277bc0ae75bbd5f4cd392517e9d8f198e39946 SHA512 9f42cb3c8aff7eb765790fd3a7f259d8076ebce11f3c2e324a9568a94d948583455db90a8714cdcbd6b6a74087167ada9ec19261862233823d0792bc79302f30
-DIST openbabel-2.3.2.tar.gz 20509105 BLAKE2B d475c2da0d7171650eeb4b78a948421b783bdbb9342c81114d3dbc19d5cbb273f7303438920ffaeef5b6332e4b72606a86ded5cbd3d7e541f62b59b46483bb69 SHA512 d0e1f8b758ffdd65ec6c31d988bffe3279355e286ce69fad12c5905b3b832e2b73ee95b1061b1576aba1ee9fe4da5e31ec30350c473be17493c657dc80caf919
 DIST openbabel-2.4.1.tar.gz 11618304 BLAKE2B 8fc051e83add9be6456e281a109bd6bbec282a64ffc83309819f0decbf167b4914fbb7f1966e95e103f268754045b804317f51c79a952ace707c6af2bd320125 SHA512 427e678f0a911bd27b9a8a05e60b6e09f113be4e5dd180daaf80c28d06368e52b57501261755ab3817a8d31f2754db24471fd0ceee706d029386d6f70800e9c6
-EBUILD openbabel-perl-2.3.2.ebuild 1638 BLAKE2B 01039ea5f28d080cc2dd47dd2c13260644be996eb9f2f7bfe4db73dabfd6c3e0ed2136a69040e4ed1ce868f21e0fafff647ad16fa995ca2f7a7967c2d0622e0d SHA512 73cb5637922195122ed9cc75092b03b34a595763baa81d8edb4ad323c4381a68593d22b023cb1ad004329b7d54e126b0227bf4211845468811711e374ff0c7ae
 EBUILD openbabel-perl-2.4.1.ebuild 1583 BLAKE2B 233459caeea67df903f80dff500cce8fc1e4a99cc13124d8cee60fecd59261979c62ee0f5072f955d2c95043722c98450ad27187f7d0443c8ecc4a27f4c9ffee SHA512 6336a34a6d5dca6d573a62276cccf34cee37e95c31704f52a178366910d5267353b49fb981c1dce07ea935cac0e7887aad60df77468f7d4838ca18b901998651
 MISC metadata.xml 735 BLAKE2B de3dbec049667c35b29293f9c27e81b0e0ffade4c57ffa519c013c788409f310dac834fd92f0d72c05281bf76317b3c7fc2b429b8644a7d350020caf425185c0 SHA512 62052b0e677a52adba98961185e5b83525c652e260ebad1b820ed19b071a1f6476cca550ec0c570a5faf0cbad7189cadb78ac8d6de077fbf15e346b7c66e4cf7
diff --git a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.2-bindings_only.patch b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.2-bindings_only.patch
deleted file mode 100644
index 92e126a77d86..000000000000
--- a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.2-bindings_only.patch
+++ /dev/null
@@ -1,108 +0,0 @@
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 449f4b4..1c9ad00 100644
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -252,7 +252,8 @@ if(NOT MSVC)
-     }
-    " SCANDIR_NEEDS_CONST)
- 
--  set(OB_MODULE_PATH "${CMAKE_INSTALL_PREFIX}/${OB_PLUGIN_INSTALL_DIR}")
-+  set(OB_MODULE_PATH "${CMAKE_INSTALL_PREFIX}/${OB_PLUGIN_INSTALL_DIR}"
-+      CACHE PATH "Set to system install for bindings only build")
-   add_definitions(-DOB_MODULE_PATH="\\"${OB_MODULE_PATH}\\"")
- 
-   # Add some visibility support when using GCC
-@@ -380,7 +381,8 @@ if(UNIX AND BUILD_SHARED)
-   if(APPLE)
-     set(CMAKE_INSTALL_NAME_DIR ${CMAKE_INSTALL_PREFIX}/${LIB_INSTALL_DIR})
-   else()
--    set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/${LIB_INSTALL_DIR}")
-+    set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/${LIB_INSTALL_DIR}"
-+        CACHE PATH "Set sane rpath")
-     set(CMAKE_SKIP_BUILD_RPATH FALSE)
-     set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
-     set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
-@@ -477,6 +479,13 @@ endif()
- # Should the language bindings be regenereted?
- option(RUN_SWIG "Generate language bindings with SWIG" OFF)
- 
-+# Build bindings only
-+option(BINDINGS_ONLY "Build bindings only" OFF)
-+
-+# Point to library if building bindings only
-+set(BABEL_SYSTEM_LIBRARY ${BABEL_LIBRARY}
-+    CACHE PATH "Point to openbabel library if building bindings only")
-+
- # Should all bindings be built?
- option(ALL_BINDINGS "Build all languages bindings" OFF)
- 
-diff --git a/scripts/CMakeLists.txt b/scripts/CMakeLists.txt
-index 16e9000..8f92e91 100644
---- a/scripts/CMakeLists.txt
-+++ b/scripts/CMakeLists.txt
-@@ -92,16 +92,30 @@ if (DO_PYTHON_BINDINGS)
-     endif(RUN_SWIG)
- 
-     add_library(bindings_python MODULE ${openbabel_SOURCE_DIR}/scripts/python/openbabel-python.cpp)
--    target_link_libraries(bindings_python ${PYTHON_LIBRARIES} ${BABEL_LIBRARY})
-+    if(BINDINGS_ONLY)
-+        target_link_libraries(bindings_python ${PYTHON_LIBRARIES} ${BABEL_SYSTEM_LIBRARY})
-+    else()
-+        target_link_libraries(bindings_python ${PYTHON_LIBRARIES} ${BABEL_LIBRARY})
-+    endif()
-+
-     if(NOT WIN32)
-         set_target_properties(bindings_python PROPERTIES
-             OUTPUT_NAME _openbabel
-             PREFIX ""
-             SUFFIX .so )
--        add_dependencies(bindings_python openbabel)
--        install(TARGETS bindings_python LIBRARY DESTINATION ${LIB_INSTALL_DIR})
--        install(FILES ${openbabel_SOURCE_DIR}/scripts/python/openbabel.py DESTINATION ${LIB_INSTALL_DIR})
--        install(FILES ${openbabel_SOURCE_DIR}/scripts/python/pybel.py DESTINATION ${LIB_INSTALL_DIR})
-+        if(NOT BINDINGS_ONLY)
-+            add_dependencies(bindings_python openbabel)
-+        endif()
-+
-+        install(TARGETS bindings_python
-+                LIBRARY DESTINATION ${LIB_INSTALL_DIR}
-+                COMPONENT bindings_python)
-+        install(FILES ${openbabel_SOURCE_DIR}/scripts/python/openbabel.py
-+                DESTINATION ${LIB_INSTALL_DIR}
-+                COMPONENT bindings_python)
-+        install(FILES ${openbabel_SOURCE_DIR}/scripts/python/pybel.py
-+                DESTINATION ${LIB_INSTALL_DIR}
-+                COMPONENT bindings_python)
-     else(NOT WIN32)
-         set_target_properties(bindings_python PROPERTIES
-             OUTPUT_NAME _openbabel
-@@ -231,13 +245,25 @@ if (DO_PERL_BINDINGS)
-     endif (RUN_SWIG)
- 
-     add_library(bindings_perl MODULE ${openbabel_SOURCE_DIR}/scripts/perl/openbabel-perl.cpp)
--    target_link_libraries(bindings_perl ${PERL_LIBRARY} ${BABEL_LIBRARY} ${PERL_EXTRA_LINK_FLAGS})
-+    if(BINDINGS_ONLY)
-+      target_link_libraries(bindings_perl ${PERL_LIBRARY} ${BABEL_SYSTEM_LIBRARY} ${PERL_EXTRA_LINK_FLAGS})
-+    else()
-+      target_link_libraries(bindings_perl ${PERL_LIBRARY} ${BABEL_LIBRARY} ${PERL_EXTRA_LINK_FLAGS})
-+    endif()
-+
-     set_target_properties(bindings_perl PROPERTIES
-         PREFIX ""
-         OUTPUT_NAME OpenBabel)
--    add_dependencies(bindings_perl openbabel)
--    install(TARGETS bindings_perl LIBRARY DESTINATION ${LIB_INSTALL_DIR})
--    install(FILES ${openbabel_SOURCE_DIR}/scripts/perl/OpenBabel.pm DESTINATION ${LIB_INSTALL_DIR})
-+    if(NOT BINDINGS_ONLY)
-+      add_dependencies(bindings_perl openbabel)
-+    endif()
-+
-+    install(TARGETS bindings_perl
-+            LIBRARY DESTINATION ${LIB_INSTALL_DIR}/auto/Chemistry/OpenBabel/
-+            COMPONENT bindings_perl)
-+    install(FILES ${openbabel_SOURCE_DIR}/scripts/perl/OpenBabel.pm
-+            DESTINATION ${LIB_INSTALL_DIR}/Chemistry/
-+            COMPONENT bindings_perl)
- 
- endif (DO_PERL_BINDINGS)
- 
diff --git a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.2-trunk_cmake.patch b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.2-trunk_cmake.patch
deleted file mode 100644
index b72a622a3afb..000000000000
--- a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.2-trunk_cmake.patch
+++ /dev/null
@@ -1,41 +0,0 @@
-diff --git a/scripts/CMakeLists.txt b/scripts/CMakeLists.txt
-index e7298ce..16e9000 100644
---- a/scripts/CMakeLists.txt
-+++ b/scripts/CMakeLists.txt
-@@ -231,36 +239,6 @@ if (DO_PERL_BINDINGS)
-     install(TARGETS bindings_perl LIBRARY DESTINATION ${LIB_INSTALL_DIR})
-     install(FILES ${openbabel_SOURCE_DIR}/scripts/perl/OpenBabel.pm DESTINATION ${LIB_INSTALL_DIR})
- 
--    set(PERL_INSTALLDIRS_TEXT "")
--    if (OBPERL_INSTALLDIRS)
--      set(PERL_INSTALLDIRS_TEXT "INSTALLDIRS=${OBPERL_INSTALLDIRS}")
--    endif (OBPERL_INSTALLDIRS)
--
--    if (NOT MSVC)
--      add_custom_target(pre_bindings_perl ALL
--        # Create the scripts/perl directory; we cannot do this inside
--        # bindings_perl as the WORKING_DIRECTORY needs to already exist!
--        COMMAND ${CMAKE_COMMAND} -E make_directory ${openbabel_BINARY_DIR}/scripts/perl
--        )
--      add_custom_target(bindings_perl ALL
--        COMMAND ${CMAKE_COMMAND} -E copy ${openbabel_SOURCE_DIR}/scripts/perl/Makefile.PL ${openbabel_BINARY_DIR}/scripts/perl
--        COMMAND ${CMAKE_COMMAND} -E copy ${openbabel_SOURCE_DIR}/scripts/perl/OpenBabel.pm ${openbabel_BINARY_DIR}/scripts/perl
--        COMMAND ${CMAKE_COMMAND} -E copy ${openbabel_SOURCE_DIR}/scripts/perl/openbabel-perl.cpp ${openbabel_BINARY_DIR}/scripts/perl
--        COMMAND PERL5LIB=${openbabel_SOURCE_DIR}/scripts/perl/inc SRC_DIR=${openbabel_SOURCE_DIR} OBJ_DIR=${openbabel_BINARY_DIR} ${PERL_EXECUTABLE} ${openbabel_BINARY_DIR}/scripts/perl/Makefile.PL ${PERL_PREFIX_TEXT} ${PERL_INSTALLDIRS_TEXT}
--        COMMAND PERL5LIB=${openbabel_SOURCE_DIR}/scripts/perl/inc make
--            DEPENDS openbabel ${openbabel_SOURCE_DIR}/scripts/perl/openbabel-perl.cpp
--            WORKING_DIRECTORY ${openbabel_BINARY_DIR}/scripts/perl
--        )
--      add_dependencies(bindings_perl pre_bindings_perl openbabel)
--      install(CODE "execute_process(COMMAND make install DESTDIR=\$ENV{DESTDIR} WORKING_DIRECTORY ${openbabel_BINARY_DIR}/scripts/perl)")
--
--    else (NOT MSVC)
--      add_library(bindings_perl MODULE ${openbabel_SOURCE_DIR}/scripts/perl/openbabel-perl.cpp)
--      target_link_libraries(bindings_perl ${PERL_LIBRARY} ${BABEL_LIBRARY})
--      set_target_properties(bindings_perl PROPERTIES
--          OUTPUT_NAME openbabel_perl )
--    endif(NOT MSVC)
--
- endif (DO_PERL_BINDINGS)
- 
- ###################
diff --git a/sci-chemistry/openbabel-perl/openbabel-perl-2.3.2.ebuild b/sci-chemistry/openbabel-perl/openbabel-perl-2.3.2.ebuild
deleted file mode 100644
index 25a87bc1b7ef..000000000000
--- a/sci-chemistry/openbabel-perl/openbabel-perl-2.3.2.ebuild
+++ /dev/null
@@ -1,72 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit cmake-utils eutils perl-module
-
-DESCRIPTION="Perl bindings for OpenBabel"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI="mirror://sourceforge/openbabel/openbabel-${PV}.tar.gz"
-
-KEYWORDS="amd64 ~arm x86 ~amd64-linux ~x86-linux"
-SLOT="0"
-LICENSE="GPL-2"
-IUSE=""
-
-RDEPEND="
-	dev-lang/perl:=
-	~sci-chemistry/openbabel-${PV}"
-DEPEND="${RDEPEND}
-	>=dev-util/cmake-2.4.8
-	>=dev-lang/swig-2"
-
-S="${WORKDIR}/openbabel-${PV}"
-
-PATCHES=(
-	"${FILESDIR}"/${P}-trunk_cmake.patch
-	"${FILESDIR}"/${P}-bindings_only.patch
-	"${FILESDIR}"/${P}-gcc-6_and_7-backport.patch
-)
-
-src_prepare() {
-	sed \
-		-e '/__GNUC__/s:== 4:>= 4:g' \
-		-i include/openbabel/shared_ptr.h || die
-	cmake-utils_src_prepare
-	perl_set_version
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-DCMAKE_INSTALL_RPATH=
-		-DBINDINGS_ONLY=ON
-		-DBABEL_SYSTEM_LIBRARY="${EPREFIX}/usr/$(get_libdir)/libopenbabel.so"
-		-DOB_MODULE_PATH="${EPREFIX}/usr/$(get_libdir)/openbabel/${PV}"
-		-DLIB_INSTALL_DIR="${D}/${VENDOR_ARCH}"
-		-DPERL_BINDINGS=ON
-		-DRUN_SWIG=ON
-	)
-
-	cmake-utils_src_configure
-}
-
-src_compile() {
-	cmake-utils_src_compile bindings_perl
-}
-
-src_test() {
-	mkdir "${CMAKE_BUILD_DIR}/$(get_libdir)/Chemistry"
-	cp \
-		"${CMAKE_USE_DIR}/scripts/perl/OpenBabel.pm" \
-		"${CMAKE_BUILD_DIR}/$(get_libdir)/Chemistry/"
-	for i in "${CMAKE_USE_DIR}"/scripts/perl/t/*; do
-		einfo "Running test: ${i}"
-		perl -I"${CMAKE_BUILD_DIR}/$(get_libdir)" "${i}" || die
-	done
-}
-
-src_install() {
-	cd "${CMAKE_BUILD_DIR}"
-	cmake -DCOMPONENT=bindings_perl -P cmake_install.cmake
-}