reinit the tree, so we can have metadata

4 files changed, 163 insertions, 0 deletions

diff --git a/sci-chemistry/massxpert/Manifest b/sci-chemistry/massxpert/Manifest
new file mode 100644
index 000000000000..fa9f93013bdd
--- /dev/null
+++ b/sci-chemistry/massxpert/Manifest
@@ -0,0 +1,6 @@
+AUX massxpert-3.4.0-gentoo.patch 2990 SHA256 f70439cd7a35b0582fa0adf862e858124dd0481ae00f455a953fa32a8b9f2aca SHA512 a3901821c803e28ff28f507ccf0509e58184c1ce02fcc76ebf4e36af4130ccee0cbe94212802b8caa03cfad2d09d926ed805b57eaf49ddc49e9045eeba0e6d25 WHIRLPOOL 615d0de16100b7d5324ef9123009c609bc60e8780457de24c919614de4dbef15a9bcba980e70980872306dc9c5d07be95bc423f6b2ce4cd6a6d277d605386622
+DIST massxpert-3.4.0.tar.bz2 16544044 SHA256 b06314722b4cbdf68dc76e55933a79487848c655fc65341a8dbc707ed89cc9e8 SHA512 50e8eaab145ab7fa225725b113d6840168b88db7d2ee194b176bc88eabf4f44c20f8dc0680986d659de1f94f2e0c6ae10d54e17e2d8b3b5aa6a9a9bf57a508de WHIRLPOOL 4578801c2dd4eee7390eadb299f3d55af29d0a48365f96ba6d6488a07792e47882e191f8eda05b6b261d9a972bf7f92f160d4a5fbbcc216ed7ffda32fcfee6ed
+EBUILD massxpert-3.4.0.ebuild 1141 SHA256 b0ddfc938b7fd93fa2133c1e7f558f2cebdb8a7c5f7a0bff78f74ef3913c6959 SHA512 4dbcf7902d4722599fce2cf944aaa8df4fbe4dee16305a59f75dfc3d36f0f3ab5fa940e016430a9c43b402170866d74ee2a61407ccd73647ecc5ea17d89c289c WHIRLPOOL 95de82125b46b0528bab5bff4e2703c874367e15f21a7d449fbcefb1b5410b3f1f23925ac580829ce16351632f3563c8279620e3a34a01d84f08c07b792d0a71
+MISC ChangeLog 2860 SHA256 3958398fef3c60a7a0b82675cc34d828583f67cabeda8dbde05b01605deca306 SHA512 cc821191fcdf194f0b3f8198aff97241c1415e88aa5805cfe8d2952b6cf0574594b95f3714e965e20411778eb37c6cc4061b05c1442fa5d4424bb07df5cce8cf WHIRLPOOL 01a1c0fe26e03ae697ec8f4d1b41a318e52824e5cadf46857f75911ad3276c5373c4650b3910c9426d804c29d22cee7af3f613ffc369c1c85e0961552226e949
+MISC ChangeLog-2015 2478 SHA256 dda315b03dd952605e50d5ec8b630ddfde6b13e6fae46af1415497a2ea92ae23 SHA512 6d147c0b33e022d09e2a9c94fbdf546d6f87d2c8494bed149b285130f2abc7bbbfc61312b527675b220c3c75948570deb0e1362e4b234b9d7fafe1006fd76116 WHIRLPOOL b74c3b0f3868249b9a98dc7e6e2170ed068d35bda5d10e3db7a431aef2f6786aae3a742b5dc7db6dd42de693a651b431c82526deadd636a9be8428863239f4db
+MISC metadata.xml 395 SHA256 ff36b506db8ce521f60da36cd854503e99050364101687450e46148b074d7db7 SHA512 52ea34dcafba93e544a877ffda573b2fe7f11e060ebf8a5cf193541c7c80642a1499d63980fcf12bdc8200a9e9ccce29c592ec7f6f3b8a6129a23b176f2012d0 WHIRLPOOL 05d83584d85ae6e8d5bca9bd84353d94c4b028a4eba394342179ea578416f9ce30398cdaea683234146f5516ef9ee9c7efdef65ea5b9d8ae45f3e76d367a5cc3
diff --git a/sci-chemistry/massxpert/files/massxpert-3.4.0-gentoo.patch b/sci-chemistry/massxpert/files/massxpert-3.4.0-gentoo.patch
new file mode 100644
index 000000000000..fc0fc4f606cf
--- /dev/null
+++ b/sci-chemistry/massxpert/files/massxpert-3.4.0-gentoo.patch
@@ -0,0 +1,91 @@
+ CMakeLists.txt                   | 20 ++++----------------
+ gui/configurationSettingsDlg.cpp | 10 ++++------
+ 2 files changed, 8 insertions(+), 22 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index fec954b..b87d157 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -24,10 +24,10 @@ SET (CMAKE_VERBOSE_MAKEFILE ON)
+ #############################################################
+ # Enable warnings and treat them as errors, on GNU/Linux only
+ IF (UNIX)
+-  SET (PEDANTIC TRUE CACHE BOOL "Should we compile with -Wall -Werror.")
++  SET (PEDANTIC TRUE CACHE BOOL "Should we compile with -Wall.")
+   
+   IF (PEDANTIC)
+-    ADD_DEFINITIONS (-Wall -Werror)
++    ADD_DEFINITIONS (-Wall)
+   ENDIF (PEDANTIC)
+ ENDIF (UNIX)
+ 
+@@ -64,12 +64,12 @@ IF (UNIX AND NOT APPLE)
+   # Plugin-specific stuff, some distros set CMAKE_INSTALL_LIBDIR to
+   # /usr/lib64 (Fedora64, for example)
+   IF (NOT CMAKE_INSTALL_LIBDIR)
+-    SET (CMAKE_INSTALL_LIBDIR ${CMAKE_INSTALL_PREFIX}/lib)
++    SET (CMAKE_INSTALL_LIBDIR ${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX})
+   ENDIF (NOT CMAKE_INSTALL_LIBDIR)
+   SET (MASSXPERT_PLUGIN_DIR ${CMAKE_INSTALL_LIBDIR}/massxpert/plugins)
+ 
+   SET (MASSXPERT_LOCALE_DIR ${CMAKE_INSTALL_PREFIX}/share/massxpert/locales)
+-  SET (MASSXPERT_DOC_DIR ${CMAKE_INSTALL_PREFIX}/share/doc/massxpert)
++  SET (MASSXPERT_DOC_DIR ${CMAKE_INSTALL_PREFIX}/share/doc/massxpert-${VERSION})
+   SET (MASSXPERT_USERMAN_DIR ${MASSXPERT_DOC_DIR}/usermanual)
+ ENDIF (UNIX AND NOT APPLE)
+ 
+@@ -144,10 +144,6 @@ IF (${BUILD_PROGRAM})
+   ###############
+   # install stuff
+ 
+-  # The license file
+-  INSTALL (FILES COPYING
+-    DESTINATION ${MASSXPERT_DOC_DIR})
+-
+   # The desktop file
+   IF (UNIX AND NOT APPLE)
+     INSTALL (FILES massxpert.desktop
+@@ -185,10 +181,6 @@ IF (${BUILD_DATA})
+   ###############
+   # install stuff
+   
+-  # The license file
+-  INSTALL (FILES COPYING
+-    DESTINATION ${MASSXPERT_DOC_DIR})
+-  
+   # The manual pages (data)
+   IF (UNIX AND NOT APPLE)
+     INSTALL (FILES massxpert-data.7
+@@ -219,10 +211,6 @@ IF (${BUILD_USERMANUAL})
+   ###############
+   # install stuff
+   
+-  # The license file
+-  INSTALL (FILES COPYING
+-    DESTINATION ${MASSXPERT_DOC_DIR})
+-  
+   # The manual pages (user manual)
+   IF (UNIX AND NOT APPLE)
+     INSTALL (FILES massxpert-doc.7
+diff --git a/gui/configurationSettingsDlg.cpp b/gui/configurationSettingsDlg.cpp
+index bf595d5..82cad21 100644
+--- a/gui/configurationSettingsDlg.cpp
++++ b/gui/configurationSettingsDlg.cpp
+@@ -309,13 +309,11 @@ namespace massXpert
+   bool 
+   ConfigurationSettingsDlg::checkLocalizationDir(const QDir &dir)
+   {
+-    // At the moment there is the french translation: massxpert_fr.qm
++    // Gentoo provides optional installing of translations.
++    // If you decide not to have translations, then this check
++    // would fail.
+ 
+-    QString filePath(dir.absolutePath() +
+-		      QDir::separator() +
+-		      "massxpert_fr.qm");
+-    
+-    return QFile::exists(filePath);
++    return true;
+   }
+   
+ 
diff --git a/sci-chemistry/massxpert/massxpert-3.4.0.ebuild b/sci-chemistry/massxpert/massxpert-3.4.0.ebuild
new file mode 100644
index 000000000000..068f083b4bf2
--- /dev/null
+++ b/sci-chemistry/massxpert/massxpert-3.4.0.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit cmake-utils
+
+DESCRIPTION="Software suite to predict/analyze mass spectrometric data on (bio)polymers"
+HOMEPAGE="http://massxpert.org"
+SRC_URI="http://download.tuxfamily.org/${PN}/source/${P}.tar.bz2"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="debug doc"
+
+RDEPEND="dev-qt/qtsvg:4[debug?]"
+DEPEND="${DEPEND}
+	doc? ( virtual/latex-base )"
+
+MASSXPERT_LANGS="fr"
+
+for L in ${MASSXPERT_LANGS}; do
+	IUSE="${IUSE} linguas_${L}"
+done
+
+src_prepare() {
+	epatch "${FILESDIR}/${P}-gentoo.patch"
+
+	local langs=
+	for lingua in ${LINGUAS}; do
+		if has ${lingua} ${MASSXPERT_LANGS}; then
+			langs="${langs} ${PN}_${lingua}.qm"
+		fi
+	done
+
+	sed -i -e "s/\(SET (massxpert_TRANSLATIONS \).*/\1${langs})/" \
+		gui/CMakeLists.txt || die "setting up translations failed"
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DBUILD_PROGRAM=1
+		-DBUILD_DATA=1
+	)
+	use doc && mycmakeargs+=( -DBUILD_USERMANUAL=1 )
+
+	cmake-utils_src_configure
+}
+
+src_install() {
+	cmake-utils_src_install
+	doicon "gui/images/${PN}-icon-32.xpm"
+	dodoc TODO
+}
diff --git a/sci-chemistry/massxpert/metadata.xml b/sci-chemistry/massxpert/metadata.xml
new file mode 100644
index 000000000000..33ffde3e6f9e
--- /dev/null
+++ b/sci-chemistry/massxpert/metadata.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-chemistry@gentoo.org</email>
+    <name>Gentoo Chemistry Project</name>
+  </maintainer>
+  <longdescription lang="en">
+Prediction and analysis of mass spectrometric data for proteomic projects.
+</longdescription>
+</pkgmetadata>