diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2017-11-26 11:42:28 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2017-11-26 11:42:28 +0000 |
| commit | 89c6c06b8c42107dd231687a1012354e7d3039fc (patch) | |
| tree | dad94f4da8a6694f3cb99f7048be2f9cf5f78f97 /sci-biology | |
| parent | 796cae72cf9ed18ba01256ac1f83a686a2a76036 (diff) | |
gentoo resync : 26.11.2017
Diffstat (limited to 'sci-biology')
164 files changed, 683 insertions, 976 deletions
diff --git a/sci-biology/ApE/Manifest b/sci-biology/ApE/Manifest index c6024d647ae1..06d31427f9a1 100644 --- a/sci-biology/ApE/Manifest +++ b/sci-biology/ApE/Manifest @@ -1,5 +1,3 @@ DIST ApE-2.0.7.zip 318454 SHA256 9d718562ef250b68dfad1de7d4179540fc04c001b0fdc5e9bd70f3605561bc32 SHA512 073e3f96badf4888c10a7c7eb453a3775d5bb9136b0bd836d37d1be784847f887e0c68b37325f430eebfb90c2d94021f10d4e8ede92de89b1ab1ddc1ffdbc254 WHIRLPOOL d13e8a997c36f8e7ac951a17c195a714a243292f9a99f524758b09b1fdc9f436b11cf1124ac1a3527ff70aa8cc6dc9ac516a910246f9f6e4f8376c78e8b44013 -EBUILD ApE-2.0.7-r1.ebuild 1170 SHA256 7384c2cc9eeb2a5be2d2f5c666bb0863e96662facccd5d24d0c54f67ea2dc3de SHA512 7260638810e5ef22da0b07f05e3046451e3b3a581706326caa073ff49255a36770cd622cbd0c428010fb39950b54248aa6112f8aa525260d8ebd312bc21d75ab WHIRLPOOL 333a557c28960b108c3879e9a78d859677ba33dc4f7c5a854fcae331ca118c1faf79199cb4f44d405c570251aefdc2f96b4159b566195e307676ea7171b745bb -MISC ChangeLog 2294 SHA256 b84ab03703ae606925d2afe2040749655e151401301ffed6f074fd1d18e0e653 SHA512 f8df638de8b147a180ee9f150a134abad76a58f20fcac2249995f0b7ef6b93bd31a469644253119301516c992f43496e477ce5cde33e3c5fc869dcbc1d16c757 WHIRLPOOL 18ebe7545252f1b8aedc7e712d6a134613ac3435412b95c48b3d8549deccbbb806f7776780e8f204ab6b6dcaf53086b2bf167893a113286ffce187cba9d89a4d -MISC ChangeLog-2015 1681 SHA256 ed4f99c5e1c819ad466daf75129d3f88c11997a4692a9a4f6287fa2a7d627578 SHA512 d0f2f54e7cdf3778d6afa724899360a2148ecc26d1e4147fd406e28bf595764edefcf021232a2a7e0fc8531596ce190abd0348258975e72716ab0cbae8b24cbe WHIRLPOOL 858889149946910622afde6a802553fbc50a9d75b800406a84beb0ba73df373a5782637f4c46e60daed246c8e364c5b8f002245f15f5a47445131103a6c8bdd0 -MISC metadata.xml 139 SHA256 5cdc1888ebc8807b9a37b1d33429c61cabe7415a4f240e21a4c2ff8eca7a34ed SHA512 8be912ace7468a4396eb1da00a9785030a8ce35da4357a01591876a1056fd45e44da65de2af3e1eb0506ce6551714962c40c3ae5a3aefa2ad231de35af2519be WHIRLPOOL 620431014dd4fb752c3d46d11904ecb2c6d4525f5b4e30f4f778a3b74d3f7187ae4ccd856ebd7eabb48ce261b21849c732928fe647edce024a3fdc082d8f8630 +EBUILD ApE-2.0.7-r1.ebuild 1170 BLAKE2B 55b1b7e157dc77bdf90d3de47ef02325573af64887bd7959fcd97a474f49d610afdf51106c1a6c059d7c24f4a20ddfd7054fb2e5b032ba22e9f3af81f6183dc6 SHA512 7260638810e5ef22da0b07f05e3046451e3b3a581706326caa073ff49255a36770cd622cbd0c428010fb39950b54248aa6112f8aa525260d8ebd312bc21d75ab +MISC metadata.xml 139 BLAKE2B b4a59c22790dfec3fbcfaea41ef363401766736b68a85bedae00e1944d0a848aa97104c2f34244c0fe7b6363029281f965fc1b3545301d341cda371eaa976274 SHA512 8be912ace7468a4396eb1da00a9785030a8ce35da4357a01591876a1056fd45e44da65de2af3e1eb0506ce6551714962c40c3ae5a3aefa2ad231de35af2519be diff --git a/sci-biology/GBrowse/Manifest b/sci-biology/GBrowse/Manifest index 451cb18308f9..cf49d1b9b8eb 100644 --- a/sci-biology/GBrowse/Manifest +++ b/sci-biology/GBrowse/Manifest @@ -1,6 +1,4 @@ -AUX GBrowseInstall.pm-2.39.patch 2878 SHA256 80a1aefac21c55c040e89028f736c058b35695cbb816e44f4465665cdd14f9ab SHA512 637dea799290213def1368cdb153463c96964ada99fd6c09d0b95e0d1e42a16942d66ef36282d39b92284ae6eb26c8346d5ad1289b5ec7b2196a1ba5090db85e WHIRLPOOL 8d09777c778865a1df29dd347befddcfa5399433ab1caaaa9d519895716612d1b8ae8e10f3d21b261d39aa65f26df18535ed6dc6db76bb1488e7eab13f3194e7 +AUX GBrowseInstall.pm-2.39.patch 2878 BLAKE2B 99ca47ef69aad80322bcc2f0a856a2e0e8d2185189172c842f3bfdc9efbda383f8d00ca5e6a829dbb48f1f668047ec4e66ac83cef433347453a91ee557820c1a SHA512 637dea799290213def1368cdb153463c96964ada99fd6c09d0b95e0d1e42a16942d66ef36282d39b92284ae6eb26c8346d5ad1289b5ec7b2196a1ba5090db85e DIST GBrowse-2.48.tar.gz 11958127 SHA256 02772c5a7a31ed87733e21278efec2edd3bd6ee8a4bec9b002233e57f6dc9681 SHA512 d5a07caf1517fb15741e8e6056669763eb04678a42637a9e90788c91e74fb34515b5f86aac10a00f29d8848aceb19d6f5f7258d2dda0e281feee550e9e2fb3db WHIRLPOOL 5a3ec31de1582c4c551c76908ca8e8024c8d3311404f0c94f7b75a391c340da0ededd80df34be3f10f581902ba1408d84e3e65218f46322546623e15a1020135 -EBUILD GBrowse-2.48-r1.ebuild 1863 SHA256 0c02849fccbdef91a1a63182b82856937ccdaddcbd2057ec2e70bd860037132f SHA512 5ca80f79071c4312c0f79ef05855d5928b47973a068bcf573296c97367f79091fc686dfa474795c2ec7b89573333de91b63b0d51d316cbcfc24a618f16dc5cd8 WHIRLPOOL abc518243534974da5bf544ce5a70408bc4d3fc764d4c835be701d2697f11f1c0b3ebafc92dc2f969acbb9f7bfb612c0ac4c2d053af94167db19f42183af0665 -MISC ChangeLog 2471 SHA256 dd324c08338a59f49764c479511dd4705ed95b8878954d8ba1d643c8d06ce669 SHA512 f2952d424a125d217adeb8bbd89836ea088e078400a6598c67ad19854de23fb6239e4ecb587887940609e48b6eb9449c304df0168ee1fee72401349778faf55c WHIRLPOOL bc5664af0b6ea51b38990edfaee23800c3659aaea3c176b917ba5ab754170a0574c01f8deac66fb6ac68f8641fa79b1979255c6fc0fd899c6e8069407742e229 -MISC ChangeLog-2015 1747 SHA256 b6e74ca4c0bab66ba47f2c1dd0639bfc87e907fb6e5200ea2eaf2aca249645a2 SHA512 f0f941e64f638ba51dd1a35d6aa195ec56cf965850115da620c7c98cc1839b2dcd7456c5ee4f25c29b99effed001e1dee169abe63a193d0832852add776ee5ef WHIRLPOOL 5b659b75c1324bc69632978a52dc3e5ff9f6d7399f967809e9bbbb520196f067ffcc5d463359c140337e66451f81bd4adf5007368e231a2e4c1f7f4e7d17264d -MISC metadata.xml 327 SHA256 150c9f7958bd83e5f82936bad19974d2b677da3c0e6e13035d8af870850118a0 SHA512 12bed277a17513c5e45f782c500c6aa4cbaad988ffb902220dbacde7e908246a62663b976a822c63a5446306ad705ad27c504713dd61e7cf90dd23ce37d98e48 WHIRLPOOL 83bde0f26dd7cbd4b430746f92a05a4f3d7f7448bc9eb14911b8958215426504b2081fbea818eb8ef4a63eac4e8428c5247446b861a025f8bc62678f0d1bf5e1 +EBUILD GBrowse-2.48-r1.ebuild 1863 BLAKE2B fdeef1bc80dba3fd92568d59886341d1ce768b7a794cf0018388c5cf547f1f78818317f4e18f54fda3d0778d7e334d2b36bce516d4342dbe7cd74c447d0db39a SHA512 5ca80f79071c4312c0f79ef05855d5928b47973a068bcf573296c97367f79091fc686dfa474795c2ec7b89573333de91b63b0d51d316cbcfc24a618f16dc5cd8 +MISC metadata.xml 327 BLAKE2B e8a0d72f6cbb085df2578e6bf4a5cafd9306643487adac84a1e60f135977df472ec0fcc5816a2002f2fe2764b919f7e4a838463ae16460e0e0b5710ca9ce5c73 SHA512 12bed277a17513c5e45f782c500c6aa4cbaad988ffb902220dbacde7e908246a62663b976a822c63a5446306ad705ad27c504713dd61e7cf90dd23ce37d98e48 diff --git a/sci-biology/HTSeq/Manifest b/sci-biology/HTSeq/Manifest index ea6d4df9fe10..ed1da15a9f33 100644 --- a/sci-biology/HTSeq/Manifest +++ b/sci-biology/HTSeq/Manifest @@ -1,4 +1,4 @@ DIST HTSeq-0.9.1.tar.gz 596941 SHA256 af5bba775e3fb45ed4cde64c691ebef36b0bf7a86efd35c884ad0734c27ad485 SHA512 ec3e1ec9cf66918f2afacf7997ab5da02015896ddd97260f5abec8343a9013cf6e857872be38b2cd3bb5bde655abe602a3c22c32448190f32e1a8f1153a19344 WHIRLPOOL da3f1d867f9cfa05e34321f75fb34ef79e943476ee650d4689e320078821703721168bfdd9e46f10f1319cc1006771cd205a80569549d21719d38aea6b0be3a8 -EBUILD HTSeq-0.9.1.ebuild 715 SHA256 21b215f330c0df909001000b539028aadb79b5a25652d236e11d7f69e4674a1e SHA512 eee6989a6910b4022b94982f1c8f598215431c6e0674609d8f30b992a4b9036fde82156fbec0bb4fad1b6bfbd56aa33dcb05cff136cb90a7f5678f18218f3fd0 WHIRLPOOL 1729d114f931a0617e59f95943175b890e80cbc678fbae57e1903e8ff18bfdd47cc526bbde26594efb3558d20ce7789e8050e9f7c33df89632c553fd65ea1b47 -EBUILD HTSeq-9999.ebuild 715 SHA256 21b215f330c0df909001000b539028aadb79b5a25652d236e11d7f69e4674a1e SHA512 eee6989a6910b4022b94982f1c8f598215431c6e0674609d8f30b992a4b9036fde82156fbec0bb4fad1b6bfbd56aa33dcb05cff136cb90a7f5678f18218f3fd0 WHIRLPOOL 1729d114f931a0617e59f95943175b890e80cbc678fbae57e1903e8ff18bfdd47cc526bbde26594efb3558d20ce7789e8050e9f7c33df89632c553fd65ea1b47 -MISC metadata.xml 564 SHA256 102e5db302a66dded538eafc86b66661637591f72fcda8cffea62b12b5aa031e SHA512 16ec7f26466ba1bb2549ee5a0362a7aebb1b8b48de51bacd37bb67a20ca1ca41b0009ca5eae304c5f29e991a79a2fda7bbc93c7dd7e2c8491a0df69a97d9821f WHIRLPOOL 4824b6a5f524d4783b04a3b9cf8c83752309a1101ce4905cd49db5c474718bd88e04afe065d64d7e9276b795fe1a98c18192719acf85f99b46873134549d4782 +EBUILD HTSeq-0.9.1.ebuild 715 BLAKE2B 13320f7fb8b3693641f1422096a30d8463cbbd563d0f924e51861c287c4cebfe37a7e65e01e89f772e8fbe4030e7484d020c5878765a7687e6a600643c404aa2 SHA512 eee6989a6910b4022b94982f1c8f598215431c6e0674609d8f30b992a4b9036fde82156fbec0bb4fad1b6bfbd56aa33dcb05cff136cb90a7f5678f18218f3fd0 +EBUILD HTSeq-9999.ebuild 715 BLAKE2B 13320f7fb8b3693641f1422096a30d8463cbbd563d0f924e51861c287c4cebfe37a7e65e01e89f772e8fbe4030e7484d020c5878765a7687e6a600643c404aa2 SHA512 eee6989a6910b4022b94982f1c8f598215431c6e0674609d8f30b992a4b9036fde82156fbec0bb4fad1b6bfbd56aa33dcb05cff136cb90a7f5678f18218f3fd0 +MISC metadata.xml 564 BLAKE2B 51853fea98b593e8ae506a514a0db1c8abdea27b31ae96ff368379e98cfc758ee74d340fe8a8aac084e175d1adbccb261a30e68f9b3628187591e8ec8391c6fa SHA512 16ec7f26466ba1bb2549ee5a0362a7aebb1b8b48de51bacd37bb67a20ca1ca41b0009ca5eae304c5f29e991a79a2fda7bbc93c7dd7e2c8491a0df69a97d9821f diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz Binary files differnew file mode 100644 index 000000000000..ac4304d4e3fb --- /dev/null +++ b/sci-biology/Manifest.gz diff --git a/sci-biology/STAR/Manifest b/sci-biology/STAR/Manifest index aa4c23836486..1c4fb6a44229 100644 --- a/sci-biology/STAR/Manifest +++ b/sci-biology/STAR/Manifest @@ -1,4 +1,4 @@ -AUX STAR-2.5.3a-fix-build-system.patch 5318 SHA256 2af4122153f1691e913d64578830c9e802ff61193a64525d724598d3fcdbcae9 SHA512 412bdf74c50869f470f3d7452d3799e92a45da198e50ecad63688e4c24444a25f044d464e462e19ba41c5abf590865e43542cd1b60a1f3948bf357be468e8441 WHIRLPOOL 14297e673a2ebfb0a68a857ace654d14edbf363de90e3ec3f21065273ecdec9648dfc90c7c356e4c6fe6b603da688b0c48177ee84ad11afbd55d21546e4d9f63 +AUX STAR-2.5.3a-fix-build-system.patch 5318 BLAKE2B 28a839eb61a5b1adef804249328c7917dca2ec765f00a48b90aa42d7da3ca393f7726b7aafdb6d0429a55fe696bd51b0e06d85ef6e50a3a4f5874c731b194f1e SHA512 412bdf74c50869f470f3d7452d3799e92a45da198e50ecad63688e4c24444a25f044d464e462e19ba41c5abf590865e43542cd1b60a1f3948bf357be468e8441 DIST STAR-2.5.3a.tar.gz 9857460 SHA256 2a258e77cda103aa293e528f8597f25dc760cba188d0a7bc7c9452f4698e7c04 SHA512 8bd86ad384f2c0331fd701873b02641301f4205a5ff0fceeb800d425da42c53b6c61a74500d37fee7fc13a5bff10e1fb44b9142811883b8f5cd012f51f1f9fdf WHIRLPOOL 64bb7dc68e24ecd7d198d281e98042fd1463fc96af8ab8be9cab8e1588c2d08ab7cd1435187f2e0ebe870da11ab607c8f8a981d76360c55dd76e1fb4bb304006 -EBUILD STAR-2.5.3a.ebuild 881 SHA256 803807893287bccc74cc3d89a5ffa73f27d17c71b4598086af834ac5bb91a3df SHA512 9b8a80c19b0da8e697c913a8401c08a71a07511477c71b1dd20748e5487e8bb5ab870c37058d49abc27a5ac56722e98b2d784431c19f7173275b82f41f9a2663 WHIRLPOOL 6f9e95aacfe4d56047d630a05d64f7590e6d229c3051893792c0a4319e596bd1d5d93148bd2ee0153e9f9bcc616feaf356ea22d67d5fdca98556629e4408195f -MISC metadata.xml 575 SHA256 c3631d72689ac1c5c560c1f8893cd29f5b9242dda5a14b99319bd966f630e1a8 SHA512 72c19651f868881808c0cad72c1db2a4a5d7f1b77d387dc0539e0e0624f404ea15380f64ccf48ddd0acc33c5e1369f3cdd53dc329e603a943b15205e647f53cf WHIRLPOOL e484372fcd947a84f05dbaf2f073380380e4abbba2b8f86183eb80ca4faacdadaece2f19a3094203aa488007f2e75d10444a1f35d9bc13ac78d735a8e89ae8f6 +EBUILD STAR-2.5.3a.ebuild 881 BLAKE2B 692466b512aaa3da2e2323f90576d47c2f5e694a4ac8ee8ce2d887435a1ef964dcab9adbdb3c3f88b43cc5463b258635be0f2b542485ee16bc9ec32b655fcf65 SHA512 9b8a80c19b0da8e697c913a8401c08a71a07511477c71b1dd20748e5487e8bb5ab870c37058d49abc27a5ac56722e98b2d784431c19f7173275b82f41f9a2663 +MISC metadata.xml 575 BLAKE2B 2e0e17fe15fa6737cb167785ffbfc34eeea0b7ac3e8655a0d5afa24eedc00f8ef2ca47bfa3503a627323d2b396de995ac65f9d859fcbe68c809451081b3bc557 SHA512 72c19651f868881808c0cad72c1db2a4a5d7f1b77d387dc0539e0e0624f404ea15380f64ccf48ddd0acc33c5e1369f3cdd53dc329e603a943b15205e647f53cf diff --git a/sci-biology/aaindex/Manifest b/sci-biology/aaindex/Manifest index 78f05182f5ed..4fdc37ec9472 100644 --- a/sci-biology/aaindex/Manifest +++ b/sci-biology/aaindex/Manifest @@ -1,5 +1,3 @@ DIST aaindex-9.1.tar.bz2 133780 SHA256 ae2e5aec2fc47835f26c8d8b5776966464bc08a5fca422c130d8312880382caa SHA512 d35760712a3f9d8c0d64e32ff450802eab20294851e569cbb9614610704f687c9ec56c440e6009b5c75c45ae12bd7968e28afcc414309318e94b092507df16d8 WHIRLPOOL c0bd3b3aa6ee730b5663f5b5c2be31925431d9f0a42488f2d2162e0d887f5ccc449c356f1c814854a0db2d48907763d586926ba14bbf3c277a006bb7f6b2fe4e -EBUILD aaindex-9.1-r1.ebuild 967 SHA256 1f33080cbbd5ba79a0ac9fa522b06872c9c0fc901453a5aa91c0f449b49836d7 SHA512 97b5c262baaa4bec1f0d32d3f343252862f5f2510cf6c4972e63d500fcc6169a8eb8e62d1f0e64f0f4ff5c2b90cbfeb24abbbc676d1c05701f092e520d7ac490 WHIRLPOOL 4f8153b4f6cf870c0928abc1efb0343829b3a5ac83dc3899e2cae41f69a655fbedbf8e323c53a0181ed35e16b5f42a3844d32f0b008c74c4a69833bda37621ab -MISC ChangeLog 2426 SHA256 1c2d7d20816e49468ac55e807a26b47aec49fc8a2219ddb769355c3fb09c60d0 SHA512 202c6d23baa93d0b18c915b924055015f7a2cd2dd803bb74faa17bac2d51d16f5b7e6c7fc7d421c49a49f0c1474b53f0cedf1f2eabe18b70847a94e085ad25e2 WHIRLPOOL 55c83b6ddb125ce870cf9f6b6fb93794cd34887afc1d4ba3719de3d99ab9d3eb11fd13806599b0dded8e13364f6c244bf7edac4983fc1874591c1fb58adbc6ce -MISC ChangeLog-2015 3444 SHA256 d61bd3519476b3a4f0868d426c463cd28c7a3940fa9b1ae53c3a2bae383c07db SHA512 bde79cf2580cfedd9db9cdd6ab88c5c2984c92987a07e6c37b04d0d93534462fc4816486b9abfc8ff09550c4e5b6c08b6f7a4b273a73f360011e53900a9aac90 WHIRLPOOL 45b527594321c95635d859a368d86a428ce29c5f2c9b6a315973f711a79b4199c8a1253a5722f3b56423d64420eeb30b8f882bbbacb614fa7a0f6e6e5153095d -MISC metadata.xml 1317 SHA256 526f2b21a5bfa52c18f4e6c67eba1e23699866d0a9c9ec5ac0cb4723a1432b10 SHA512 34360f262abb6d882e95272da0102519c75fac4a367c1e122cb91f3a81788e0693b33ee84f6a602a2fac965fb22ad2cec20c5f2950d3fa16af80cb18a274119d WHIRLPOOL a3fbc49445969106ae84e931bfe16f7af99e620c026aa2af80881e4b76a3e9c9367919fd974bca8e0ff7c571d36621990f25f517f2cd5bc1945962294d5b9b73 +EBUILD aaindex-9.1-r1.ebuild 967 BLAKE2B 4919376ca66bdd1a2c829fbd0fb3068173121bd60a66455deb2d5da2d69bfc2d9cfa7484f868da79f671951d65ff28f2910c9b80a20a7b95ef5e41e02feabed8 SHA512 97b5c262baaa4bec1f0d32d3f343252862f5f2510cf6c4972e63d500fcc6169a8eb8e62d1f0e64f0f4ff5c2b90cbfeb24abbbc676d1c05701f092e520d7ac490 +MISC metadata.xml 1317 BLAKE2B c2ff790b082c9acec5721840ba70e7fc776fadc87b118b57b5decfe6b7f795f9fe9913febcf15aeb2591a1419cf83676ef8fbaa563598ad49eb9256dcbc5a379 SHA512 34360f262abb6d882e95272da0102519c75fac4a367c1e122cb91f3a81788e0693b33ee84f6a602a2fac965fb22ad2cec20c5f2950d3fa16af80cb18a274119d diff --git a/sci-biology/abyss/Manifest b/sci-biology/abyss/Manifest index 53cbd51fdb65..ca1e9596df74 100644 --- a/sci-biology/abyss/Manifest +++ b/sci-biology/abyss/Manifest @@ -1,5 +1,3 @@ DIST abyss-2.0.2.tar.gz 1036135 SHA256 6482b81eb5439703c0dbf6cd7ac25cd0df7541d9e04ef7865343b241e21db460 SHA512 b19325b9d51e80378fc9818942c4005c94f470f0ad8ff6c1b8b593ad0216d35f9a99c0aa7c627082372690a6a7094ced8ca8efeb0bff6014ca46a67d7eb16a30 WHIRLPOOL 23447cb00b0bb9b5b8a724ba44f8d7193d9640ccd19956b42bbbd83b67557b66b7c68141d6f292c4ab11ab523286471d5ee1c938f22749a61162de056a0d903e -EBUILD abyss-2.0.2-r1.ebuild 1255 SHA256 76cd126c146ca100d00fe6b48b8a9a2bfcdef7db9dabfcb7ab6eccbeaa3d7c68 SHA512 2a75296cc2d5884be09ce2aa6280af3e54735501125da0dea4cbd297f18061a94ac1ced98990087c209f196c8f624b4cae24c7f7c383913b59ba0c51e9823ed9 WHIRLPOOL d50d12d60d22f98d320a42693de9eef945d64067ac0b5cf25cfc24b8b657789b04b8e08c9ab133a3683b0486b8d0441ec35d2c7d24eb1f2930e78ca152d84d2f -MISC ChangeLog 5076 SHA256 033515486551f430c662c0f8f24932c83fbd40ce3dc20fc487aad8b2449d93e3 SHA512 b16c9e47c2af4c8dcdf421f487aa4d665b3658457fc77a19f41bc62b7d12df756f7fd0d5c0ff2e03b0c3dd4558414126be15c0c6e9cff10d06c4e1e45871bb21 WHIRLPOOL 45db002d9a6e585df0460ab09fd046d6dab8cda26a81aba849793ed1d0c54ce13330b7963274d633410934d6f7d6c405a91f145c33239afb6082fe865449288e -MISC ChangeLog-2015 3086 SHA256 3e295bd3a13f20016e1baaf773c888fad647ad1aa09f77719590a3d01b33e320 SHA512 28de3b6bb48d775fb1ecd1bcc37aadf43451a7200ce691b11833a41dcdde6046e70e7a3b76d5fecb2cadcd96fd94d3e67b6ad1758b9132028aac19339c8e9bd4 WHIRLPOOL 9d73031727499d87e932b55833512068e36c57ca6ab4dc06d8a458f3db89fefda263d858d322468f6de5a9a34113f1a826a01878c633d19ed3d79d962ba410ff -MISC metadata.xml 572 SHA256 5649b00a9f038a5916a2205b92cf55df64d886a7451362d2ad481d09dd53f412 SHA512 b7461a55a1f34d22b8faceb40c15f66d7564a5fd3ccd626533972f25fcca36f8ce47e7edc5e96e7eab6c9bfc27ac4e094b419c241b7cc4de051025e1a9522198 WHIRLPOOL cd121dd5eeb4084400bc72b6c9af38076b064d5f12b19fe7964a592fdd881fd1bafd4cd8a2389d9ba5a03a99762452e2f53d7898916b09e258692d24a23a24c9 +EBUILD abyss-2.0.2-r1.ebuild 1255 BLAKE2B 80695f29e6568b78c8243277ac1baecfccc9c6d1f2100fe45c7f6ecc3aa1308b16e5b661c74eb3f5c2b6273c161953cfd2257f0eb1c9e232a5d2eca8dfcb297f SHA512 2a75296cc2d5884be09ce2aa6280af3e54735501125da0dea4cbd297f18061a94ac1ced98990087c209f196c8f624b4cae24c7f7c383913b59ba0c51e9823ed9 +MISC metadata.xml 572 BLAKE2B 987284bc0e435174f2592854cf67e44d155b64975a65d69fc988352f9bf0c06bfa412bcbba0e3a5a4819a846d5fd1c5695627b8b75ab7c955abff1b0bb4ad76e SHA512 b7461a55a1f34d22b8faceb40c15f66d7564a5fd3ccd626533972f25fcca36f8ce47e7edc5e96e7eab6c9bfc27ac4e094b419c241b7cc4de051025e1a9522198 diff --git a/sci-biology/allpathslg/Manifest b/sci-biology/allpathslg/Manifest index 16522ef9827f..bfcc1e5cc734 100644 --- a/sci-biology/allpathslg/Manifest +++ b/sci-biology/allpathslg/Manifest @@ -1,7 +1,5 @@ -AUX allpathslg-52488_fix-buildsystem.patch 1301 SHA256 c04a16ed21984ccbed04fa38485ad16fd4de5f33ae0b79bc5a270803d0671486 SHA512 f23495515581947761de8b14580b0c28070f38a9a1c9b91403cdf5fbc0efcf48230a3ef7281f9700f0c45b87ceda97733d9329cfacb6112f60fc2f246a0416b9 WHIRLPOOL 87d51db82e35b88c6195415ade7186bea1439d840c21dd36816a38165706f77d5690bf326001c6ebb59b62021ca6d6e60bbe03a3d96bc50a244992af369bd3d8 -AUX allpathslg-52488_remove-namespace-std.patch 49158 SHA256 7b04780e03591801e8f1ea404604c1dbeddaa304880c1c755c8a594d4d2b55eb SHA512 e3c918519448c0e37ad57bc90fb6eacad246e53cd759fbf910d725358c1d2e2712f1d1008002e751e0c4decae8a37a5f78e0a0d39dd6a276475aa92cc310d509 WHIRLPOOL 3d739564f72b0d6fcbeb10c4188d50ea9f46725c992d96600377186f25d1f20baacccdd3c1b7debf236a6455f7d66980e8aa79e68b28998f216c067fde106727 +AUX allpathslg-52488_fix-buildsystem.patch 1301 BLAKE2B b478b182a5e34cd462432af3be1432c2d9e4bc876cbf901be56537f842b616fadb767eb7eede3b0ba2a250e83a05dfd4b262b5ce3a0dd17161f0f838b5cc7431 SHA512 f23495515581947761de8b14580b0c28070f38a9a1c9b91403cdf5fbc0efcf48230a3ef7281f9700f0c45b87ceda97733d9329cfacb6112f60fc2f246a0416b9 +AUX allpathslg-52488_remove-namespace-std.patch 49158 BLAKE2B 8779f7ee66bae91d0093afd76e866a1073e97e4dc2bbf9408c5878dec5e582619655d18d05d99bf86900a6951a11bd2b87e7e6837fb96be362c60a8769e071f5 SHA512 e3c918519448c0e37ad57bc90fb6eacad246e53cd759fbf910d725358c1d2e2712f1d1008002e751e0c4decae8a37a5f78e0a0d39dd6a276475aa92cc310d509 DIST allpathslg-52488.tar.gz 3121949 SHA256 035b49cb21b871a6b111976757d7aee9c2513dd51af04678f33375e620998542 SHA512 c44ef1a3ed5b343bf096663309cc399e79d65e83175232743cf330fd0d426633bd0d388922fd0c73ac0927d85ea9005549c8e4f7711c79fea7107068510ef30d WHIRLPOOL c63a13450c55fce8f2c5399bdd5d8f32939e31d9d13a120835b1d826ae96e251fea81caa134d5d45ad857af0777c22e4ad1d894c81a74db6d83a7d9ad83b12b4 -EBUILD allpathslg-52488-r2.ebuild 1462 SHA256 03dd7434b4ff119c69350a3de3bf444442b33719a4313c00ae622971cc23a605 SHA512 9e2ae363ed6342015b773de5aba2d62ba30321b1e36d7f9f7bb46dc00592e6d9426291e4dc096ca437640466a4966b65c7217f34a6c5df697c43f43fa5d4c0e8 WHIRLPOOL 8cd24d047e67f3820a15f1dec87f145609eadd301fe93679f7b8580f7f10aa7715274e901a1327dde4fac6b2ca87f8d6a823e3f16adf683e16e746125c2c9406 -MISC ChangeLog 4371 SHA256 4529ee3eecccd149e31b1ccd37aa77f6c53bb896931ec4442f5b5ab9f49b8711 SHA512 2069d8500668efaee450cefe842c2b49c50fba619334943f81271dbeb24d2fe29587f0eb29582f8ea4c0aaf456c91245d1ca0f074138696ae72fa6b766bafacb WHIRLPOOL fb10e6e2297eda9f0c1223562805226b3ae235cae36a3cb7e19eff3d788830f7c373f5ad0ad7743f9665466e2ce24c358b3e9c315baa6a02f4e413050eb55d46 -MISC ChangeLog-2015 3047 SHA256 d1965964e6a3587e3ba74badf03f4842fc00bde406aff79932abaf63b8c84788 SHA512 c248db08878f989779bfae72281d76e3fb08e021732ad5ad557d2630ae8e18ffaad30a6b465ffb7f50efea957941554ffc838a959d8de240e49b028653d9f181 WHIRLPOOL c77d8923472edb1f8090897201f2c251c356733d959b6246ddead36ecc8a97fa4f576f3462399428d13dac0111adbb788c76e946b8d3cbccf7a5d3356e175d91 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD allpathslg-52488-r2.ebuild 1462 BLAKE2B 8a7342d93f34192da2a2097795695ebbc53bd5092d66769acaefdbbc937f2c1841342c280e8decb09478d12607a8df09632706478d177a15150ab6e88374179d SHA512 9e2ae363ed6342015b773de5aba2d62ba30321b1e36d7f9f7bb46dc00592e6d9426291e4dc096ca437640466a4966b65c7217f34a6c5df697c43f43fa5d4c0e8 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/amap/Manifest b/sci-biology/amap/Manifest index a849ef2db919..8ce16bf8debf 100644 --- a/sci-biology/amap/Manifest +++ b/sci-biology/amap/Manifest @@ -1,7 +1,5 @@ -AUX amap-2.2-includes.patch 1088 SHA256 3b22dd095d3dcf674528eb4641f325f7f3e30dc2f8d1173eefa8e1474d1fc5e2 SHA512 e9c2ae7ea75f059b816a8562c9ac79e343d73b9a3d63ac1182fe41b3634bf0b949738a4bdd90c09f61bb4505a721e2faa98334b81ad17c0d7360a2e3f37f9044 WHIRLPOOL fe51978a3a6538e9c57731bfa3b511b342ee95dc93b0fce75f0afef25f6b5d398cf323206e75dac10d0f1bdba538f6a1dfa056d6e0dfa5d68e961579ea6ee863 -AUX amap-2.2-makefile.patch 1201 SHA256 e5ab2e395a610632080c8736bd7e5e91ca36e87ee2165c8b2780772fb85f0cdc SHA512 8cd43b70299e12f32dd6b46a73e6ef10c7e85b5ec6d152aef69f54954a1083c92570c40bf35ea363084a3626161c3e28d214bb2c5fb76bb396d9be2edaa869a3 WHIRLPOOL dbf74ca0a9f32c9bba5e1ccc7346b4de6ffb5b6ff5d4002ee5ed3358b18f2073d917399eb797cb588f78aa97e2c20f94566ca92332e04986c4b72ba46f02e044 +AUX amap-2.2-includes.patch 1088 BLAKE2B 3b870c229f3efb9819d9f176b59b014ad4bae3034ed4fe9f8c8474ebf8ce7c8373efef66c3c61c8f6fe04a645243f09639aa4a4c95ee75f692e504f4478fcf77 SHA512 e9c2ae7ea75f059b816a8562c9ac79e343d73b9a3d63ac1182fe41b3634bf0b949738a4bdd90c09f61bb4505a721e2faa98334b81ad17c0d7360a2e3f37f9044 +AUX amap-2.2-makefile.patch 1201 BLAKE2B e404de0909f501dbf5005d6c995fbb6ecf588fe06798483703c25d29c070faa6ce5eb06e98e35b8deeeddbeb309eb6560d13af6a0fa64ec9435d00e41f2bfad2 SHA512 8cd43b70299e12f32dd6b46a73e6ef10c7e85b5ec6d152aef69f54954a1083c92570c40bf35ea363084a3626161c3e28d214bb2c5fb76bb396d9be2edaa869a3 DIST amap.2.2.tar.gz 102861 SHA256 81f8c7328c59775a5430d2210f1e4cbed7072bfd8a37f62c8d387db15b7757f4 SHA512 a297b6eb1b52d5deab65db5bb1344b06a85c7ef6fa4b550798501041091357e605543eaadd85c053a74e857ebdd7b846dca4b226c5c61bedc329bf93c886c18f WHIRLPOOL 2d4b8ff711888bce570aa823e323525b104aef16c57090dc18c3fdcec39a98012b2597b7015bbe9a3626b15d438e488deffcaef96f426fc73a47f10f117c237e -EBUILD amap-2.2-r3.ebuild 1135 SHA256 76f1e79ba6494cab86c84d6549a1b7a653708d40ad87f33523ed26ccb9fa040c SHA512 d5bbb29ad83fd210b3ba7f84884f4bb517d132fbdaa58b658c679cccd96f1219f9fe3d6f8f58a029a10c782e916f441a9e8de969390c168c0202fb230fdb21a1 WHIRLPOOL a7cc931377e49f60abd1daa81dcfbb026e9faa1afcc989e31f328d14282bd4af172ececf659d1e8bade4b0c9b0647f7ea3f5880130099637c27b68e67b54e940 -MISC ChangeLog 2489 SHA256 326205792fcd67fe106972194e905ba9ae25bb794fba715b7fce5199ca999402 SHA512 e21b9c2380fe0cf29d67e329413ee2183fb4af8c4917220ac2d32899be795c7619614d9f9dc57714ebc34512f766f05986a9a8750de16e52a8b12b72f1805d30 WHIRLPOOL 6df50410fe7d249640317502a9b7a4805b2b5df76d5080bb1df9a49ae5c0c9ed40f860f46a15c421c73036d9e2e519d217cbd93bf13eff7982cb19ac6a731d23 -MISC ChangeLog-2015 1909 SHA256 483d897d4db46baf9efcd1e7208f33d86c8fc33c4adbf438751f082034b380a4 SHA512 6307597849b1d2ca56d5f9a4a8f1d59f6ee6bcad9776f0c322844d244c35aa3fa0e52d80ee039dc2e29785194748a2d5e643efade58d27861b105043df70d2c6 WHIRLPOOL e4118bc4e5f0d46a34816927483e6c1de832197c9cbffb739e58062e446ca2ecd1d0313c12a1e1f0af6a1c111d9a0dc8d58c574e290d281460483bcfab6c125b -MISC metadata.xml 257 SHA256 4fb4f49e90ca33b7ed48e29dad0b163cb069e546927f1935e1ef75df1faf0087 SHA512 5be44a06c71b100dfe66effc1d12a9801f6daf2e252f74b6499528644db9b3dd00d51827a984817b78755e8d544f9c674c27c6a370c4c4414ce26a09b478b69b WHIRLPOOL 1ba3dd46c533b22c9b1ac469d0f110149fe5b2081961928d96913b72698c527c317cb17f9ce74451100d7769646b7fd0e3d7c534149474f1d04520704e4e7b1e +EBUILD amap-2.2-r3.ebuild 1135 BLAKE2B bc214283c42ef027c605c678ef08b5b385cbcc9763580c6dc54f3c2a9ad44bb8005681b28b6a4036400ced23bb61b9766a467b8892df457590bee45f652e51bd SHA512 d5bbb29ad83fd210b3ba7f84884f4bb517d132fbdaa58b658c679cccd96f1219f9fe3d6f8f58a029a10c782e916f441a9e8de969390c168c0202fb230fdb21a1 +MISC metadata.xml 257 BLAKE2B c0d9bf845137c20d86333bbe5f6f7d27e5ae2edbdd6997f870a6678825b5494b8160a4dc5fba6221f252e1146c57d3237f3d7feb098a9beed9c272f57f30d708 SHA512 5be44a06c71b100dfe66effc1d12a9801f6daf2e252f74b6499528644db9b3dd00d51827a984817b78755e8d544f9c674c27c6a370c4c4414ce26a09b478b69b diff --git a/sci-biology/amos/Manifest b/sci-biology/amos/Manifest index 5f8f3526e54d..e420c51576e2 100644 --- a/sci-biology/amos/Manifest +++ b/sci-biology/amos/Manifest @@ -1,10 +1,8 @@ -AUX amos-3.1.0-fix-build-system.patch 3132 SHA256 1a78682189bcca5b7f896f8c88b63c45cded64dc90210f18ac6be73c39b19ba2 SHA512 b23c168c166f8a1dad89d1b25536a59be3e68a6478cef3db5664dc901cef0547213a8622a72ee1a2e1d5b8930c65d95e309573f903423e8fb80fb7312d89f863 WHIRLPOOL ab6aeb185c2eda629b168df776a9ddfcac611c2458627019459fa2fbdb5dcc393d8751a6e34e319bfe9db092c3df5892b355e18d598ac5f9e133968312d92922 -AUX amos-3.1.0-gcc-4.7.patch 400 SHA256 59be7e1fa3c4125f463e666f304f2194fc73026c71005ac16891e950e75b8af6 SHA512 3777885d5cd5edcb881abfbe1580092e073311797bd4776cd3ec9d27b634339718238be7f452f1ea1a0aea5fb9f6059d6b6f6a47bc2a0fb6d1811a2ec51a0835 WHIRLPOOL 5c446c940eed42a5d8b47c102e97a4fc3c9818aa40f6049ab6b4e78ee8cf445665afbc78b9c2742e3de3adccb087e8f61ba3ebe567140d2e26d2a6167fe13b65 -AUX amos-3.1.0-goBambus2.py-indent-and-cleanup.patch 1057 SHA256 6dba8f9c13ebabb5aa55c8b6ec71a015315662d00ee749df96e6715b9de45736 SHA512 5d2a0d4b222a23f30db560937b1c0e447f61dc786e097b259696fa41dca1e57a17a1e684bbd9fa9ddcee1334f7e6e3a91ccb7567d4fe079c3bdb3bb54034d11f WHIRLPOOL 3abec572fa4384f7b4d60aa6cb5d3da945e9e78ab462757945e55f7a64440023a229a08ab40b861d9823d7694e5f92683459381865757f9ef284c228ac3409a2 -AUX amos-3.1.0-qa-Wformat.patch 4511 SHA256 afa52695df2d2493089386714acad8d420bcaf64ee0b47273440dac93c43731e SHA512 de0382f9128b46fef8e87d14de75bbc9f0af3e8bcbb915edab26a883186109ab29ddbb31c5cf70fc8d37700abe36fb73a7bdca46c29672052d01ebebffd52abe WHIRLPOOL 6e9de1a7a01b1cdb4c763205df9544d9653cb309675fa6ad250b033a99c70de24d0f0c1490222e3c18cd07f86cfa4b1946dbf64aab837e54efb61201dc53a5f8 +AUX amos-3.1.0-fix-build-system.patch 3132 BLAKE2B a7758991b5916cec6e9a2a39ee55beef73d14c19b7154ab2ced8e41eca411d1b6cacda5b7388e3ee48f330e489e4012660b3c08383c423a8553d283cd1cc4764 SHA512 b23c168c166f8a1dad89d1b25536a59be3e68a6478cef3db5664dc901cef0547213a8622a72ee1a2e1d5b8930c65d95e309573f903423e8fb80fb7312d89f863 +AUX amos-3.1.0-gcc-4.7.patch 400 BLAKE2B af160452d1bf52df204156dc9039645483c0ee349b96c2562eba4608695ac76b308c9cc2bc82a55401b3d56c33c4d2bae9e07a0a62ed4a3b15becb8f95ecda7f SHA512 3777885d5cd5edcb881abfbe1580092e073311797bd4776cd3ec9d27b634339718238be7f452f1ea1a0aea5fb9f6059d6b6f6a47bc2a0fb6d1811a2ec51a0835 +AUX amos-3.1.0-goBambus2.py-indent-and-cleanup.patch 1057 BLAKE2B fde1011da762750140f8880968c952b275d625f92b43ee8c35aaa23b687cc8d6cda441aa7b7cc883a67efe2a0d4a9cc13ee9f6b3663fef9f8274693350fe8e87 SHA512 5d2a0d4b222a23f30db560937b1c0e447f61dc786e097b259696fa41dca1e57a17a1e684bbd9fa9ddcee1334f7e6e3a91ccb7567d4fe079c3bdb3bb54034d11f +AUX amos-3.1.0-qa-Wformat.patch 4511 BLAKE2B 64064175db625a098a528f0c8036196968c58dae445edd3c98fc5627e3a84d593abc438958573ef7a28193d0d2fc76db30fe16a180a383dec9bae5084305505d SHA512 de0382f9128b46fef8e87d14de75bbc9f0af3e8bcbb915edab26a883186109ab29ddbb31c5cf70fc8d37700abe36fb73a7bdca46c29672052d01ebebffd52abe DIST amos-3.1.0-fix-c++14.patch.bz2 8033 SHA256 23b853959147466e7d766b1fe54e0afabfe3a89b84c89f788f2b8e749344efd6 SHA512 76e26ca48a009cbf637d9462878223633e9b21cbd12d58a19e9a561f2cf4805791becc0b5f7aaf81975ca1e02b263cdd9d5ff310c4594670922ea65885ad9634 WHIRLPOOL d4530a5b3ff2a90419a1368a0e652bad367d2fb7601765ca42e8110ade87e8360f90070c0021aa25f5a6421815794a83491581e16fa9cb26be23bcb187840ff3 DIST amos-3.1.0.tar.gz 2094268 SHA256 2d9f50e39186ad3dde3d3b28cc265e8d632430657f40fc3978ce34ab1b3db43b SHA512 7a416b9a0438b47425355383b709491a58f38c8d834df29e43c942170e710c6ea7e3bc8c509a58421b1340ad6eece9ea2da357ce5cd1d41ce08375676ee30491 WHIRLPOOL df9b547fcc0b7bf0149641fd8df9e4558f61bb6c17ded0facfeecde25d3a6307b40414e7cb8b2f021fa8cc192ee956672c26e0fc287981f4733a393739e80b61 -EBUILD amos-3.1.0-r3.ebuild 1089 SHA256 f5fd59da7b6523c22ea79bb235cb88a66899ac20cd58543e6442ab1dc9bfa8fd SHA512 5eaebe166daa11142d77e0d1623a46a0736a1d1180c6bc80ad246f67c684ad38ceba0cf179ea2a7af83c8c2785f24ed12f54c2a71d6a10fe7174f852e649ded8 WHIRLPOOL 25735963c50ebfa80aae91aa21e7effd9ddc67cea56aae9ba0558ff13f555318fdead0e93a796538016acc62fe748fa242fa476ed2d724fc618debce3e571de1 -MISC ChangeLog 2862 SHA256 f41c2ee7fe2ab280c70a7ab4dcfc7996fbaf88168da479b87cd4bb9286a0b68d SHA512 aba67e201ae372c89a3575f1173c9a0145826cba6f421ed6810cd97335ccc375e52e2b146bac6861ea9d061832bd6a7ee1904d4b2bdb3a920cb3ad83e04b20f0 WHIRLPOOL 152c685210d814b0133f14b00627dca6cb88f935429980e1775cda333436182cd09dc5579329b32108b63a68a787f595200457a406ca81617d763aed8f01a69c -MISC ChangeLog-2015 2903 SHA256 acc84b2bce3b80f1badfbd7f077aa6ce126153381202ee7216fc690d71e6ded8 SHA512 4aed01fa4327bf98f4953d3c4007c4b2d2cf97d269f94733233134c21785ba356f915fe907019f862869e79edee801e3d4f4daac0f59feb18cab5e05c87870a0 WHIRLPOOL c7a8ac94dd18417292579f2a4b482877ce64050b2a263a8f0f30db94f36f800949216871e4726773335679c36df3581b189390b4d1280550490001f39343fe0e -MISC metadata.xml 345 SHA256 d071906d7402159bb5834de6e489c5677a5e459e37aa05d0049f83d9e2784c81 SHA512 a31ba5660e524b70517f2644bb929d4bc0428d1ea682752ca2ddefd3b5a8a5c8aabf7a9877fa61e8fe12599da65e9f0a6c1e7db90d61729e26c33b76303ff497 WHIRLPOOL 1610108ad99b2b6340c4c7cbf42f5230e0b08513a9efa7bda8030105025e19499c959e1c17ff8ae8aa2bce4f0234ad2b038bfd9840212080ce2edec5a6411a8e +EBUILD amos-3.1.0-r3.ebuild 1089 BLAKE2B 7ee83b8e948e16f3fdc486ed8896c6fb57496e982859ca18cedb1e0e8a2bebd9125fccd2d13602edc137a6fd6d62d003ab4f9dbe0ac517937b76690d87769253 SHA512 5eaebe166daa11142d77e0d1623a46a0736a1d1180c6bc80ad246f67c684ad38ceba0cf179ea2a7af83c8c2785f24ed12f54c2a71d6a10fe7174f852e649ded8 +MISC metadata.xml 345 BLAKE2B 750928cf3e96c24e2af8e84d5889100c1954eb140596368dc00d479f63898c82e3bb0e07a9e970c6c12eb36ed3ae84c6bcc7913cf3ed56e2d71120185d24a4f0 SHA512 a31ba5660e524b70517f2644bb929d4bc0428d1ea682752ca2ddefd3b5a8a5c8aabf7a9877fa61e8fe12599da65e9f0a6c1e7db90d61729e26c33b76303ff497 diff --git a/sci-biology/arb/Manifest b/sci-biology/arb/Manifest index 01a07452c4d3..9b7ba247eae3 100644 --- a/sci-biology/arb/Manifest +++ b/sci-biology/arb/Manifest @@ -1,10 +1,10 @@ -AUX 5.1-bfr-overflow.patch 715 SHA256 bedb03c70bd0e4e180f8d6e966bfaf34af32125a1595aae8a994617e6a2f2833 SHA512 840dc83a2f6a6c7da05437a72bbc9372a229a18f6de08758141c6ed142a034f4b2954e9a650185fcdcdd5e672cabad32d9b2496098a2369094f502f87143710c WHIRLPOOL 8c7a986da48f147962456ecef668e516b1c14bd60ce7084b59d4dec2ca24d5e785f1e5ecb59ce6a824676736566cfedf8aa19746492aaa1062b584d3c799fb8a -AUX 5.1-libs.patch 503 SHA256 dfa5f131eafbf163b9a3862360694a7b1f9d6231357247c7f18f696c4c4dd983 SHA512 9130fd43a7a6c43ac5dce56eeb85cabe881ddd12a2786ae0ec73432584d498afb1b7f28514c9d078e6c19f6654f2ef88192e96cac2f4be5a04474f534a2bdcdd WHIRLPOOL e82d5ae89ed7ffab4d26d6ca4049db1ebb9744c2dc41626c219d5263b8e09a27dd8cebb880821e8d4707bdbcf70a02ede760745fbd34567dca72883d937f2dbe -AUX 5.2-libpng15.patch 1545 SHA256 e0fca903aef6c23173a6484717bdbc08e520a47f6f80c589747bddb557169e50 SHA512 8215bead0ff0d579b43b6c75f82306aacf5248833b13536ec0bbd703433343f2920c2fb68e015ea39b105630c1c06bc45cc9e165f230deddd52e76a2d7f82bdc WHIRLPOOL ad3edfb1db9f6c811fef635e8d1fa03961a8906b253e06a705ee7e712fbb5dfb16b0e1a08af07eb30b6040b61050f53b73c872af09edef3d60c7e2f558ec44a3 -AUX arb-5.2-gcc-47.patch 330 SHA256 994883702df6406e9d44ff4e3b362046428db25735910e211fc15c6e7ccc7b08 SHA512 36b2afbc6c177c44728da92fd596881b5035d5d7b8880fabbdaa360c9f59057816952112bb98ae0fa5b04352ea99b85318f262a6d91001bc177dd1e6069611c0 WHIRLPOOL c7b0ef45be2a567cd2d5c2032fd9195350f71651c8d9dd7269f94d32586b514b0cf4d2857cf4a2b63ff33cee3620cf87403d484214e95c780d28a450ce9d4928 -AUX arb-6.0.6-arb_install.patch 2752 SHA256 939d1859f656f3ef6c15bdf4787a38ab15e9059f502cfaded593b429b67b8cfe SHA512 468d7e1ee599334e593ce95374a29a1815ba8559afb6d773f533a07b0b520115e1aafcbb228ec82f331cd2d580816d68bf2f9351774ed8f52942b13e23eb5746 WHIRLPOOL 1335819b869cba0821001830a3531f1bbcedad51e53629bb49a9a932247ad8ef0d8b955e0ce3c465a56a2e60530710513c6031bddec01bdae963ea94c7cd5298 -AUX arb-6.0.6-glapi.patch 537 SHA256 7a0618c981cbdb6ac771d44772955ad0c58f0b6f32660807322c190f847b16db SHA512 249847d0b563460447c7c53167ec50ba541270614943a471aab5c8dccc1c9e253af79746834fd722d33f9a96607e9a382f7ae80fb96656f52d9a143fd4760be5 WHIRLPOOL 99c17da6f16843e2bba55b1b5711f98bd86681dc314024bdf84cdfe6117d05976f4be60681f3f815b56768c455fb10655305a2a43f537cbca9962c7ed6f503b5 -AUX arb-6.0.6-tc-flags.patch 1540 SHA256 dcaf98761d17ed65ba7e7644d2bed769601e1965c4180d8a4a6d4fbeccd55443 SHA512 e5bcd297196f473c6cece3e5a28380011f20e5d0389b6de508c4ae0f82f0d6bb4502b755a89b1f9ddf582ab3a9722793c6f7727168b442c08dd99f95799d3418 WHIRLPOOL 0cce159018047fbfe168ce79a1d235407f3629700489f8b4d14128d1b42fae12a7219ce481ee2ecedd7d1ffc4e484437b2fe2c7f4669789bdb7e22ca6850fc8f +AUX 5.1-bfr-overflow.patch 715 BLAKE2B 04586fda551093d2a3f15af52e10c228f5463f46e9c7c6a57eb4a42cde68800902f2e4a0ba6caec1dc2f6dbace915018bb285cf8d40f24e9b3a234f26762245c SHA512 840dc83a2f6a6c7da05437a72bbc9372a229a18f6de08758141c6ed142a034f4b2954e9a650185fcdcdd5e672cabad32d9b2496098a2369094f502f87143710c +AUX 5.1-libs.patch 503 BLAKE2B a389b2af00275a66ce2a51570b3d6249eec8cc08afb1b32c3319c51698bcbf581671182f13f0aac612ece57299be787257fe8c885b3c323fc133081f0733ed1a SHA512 9130fd43a7a6c43ac5dce56eeb85cabe881ddd12a2786ae0ec73432584d498afb1b7f28514c9d078e6c19f6654f2ef88192e96cac2f4be5a04474f534a2bdcdd +AUX 5.2-libpng15.patch 1545 BLAKE2B 657d1bdbcf73be2af4391764df043274acb18f1445ebaa425652a5075a2a6a158c0804405524d0291066267f8509861a6d30a22713cf8b28636c41767aa14078 SHA512 8215bead0ff0d579b43b6c75f82306aacf5248833b13536ec0bbd703433343f2920c2fb68e015ea39b105630c1c06bc45cc9e165f230deddd52e76a2d7f82bdc +AUX arb-5.2-gcc-47.patch 330 BLAKE2B 441bf38b1b2e34ead2a0fe1d1e15399c3c0d31d321fe93abd347e73b22adb8440c54c7aab4bd50caac43ccd6487ef1c834719f072b4fc8656e7735a431c9fefc SHA512 36b2afbc6c177c44728da92fd596881b5035d5d7b8880fabbdaa360c9f59057816952112bb98ae0fa5b04352ea99b85318f262a6d91001bc177dd1e6069611c0 +AUX arb-6.0.6-arb_install.patch 2752 BLAKE2B ca081a0440a29c59c3e46b883c474a2794656d143e975bd53d74fb7a35901f6fd8acf29ba13d75617d6541e2cf8758d7405472884f0d810fcc6fde0d8e3f5082 SHA512 468d7e1ee599334e593ce95374a29a1815ba8559afb6d773f533a07b0b520115e1aafcbb228ec82f331cd2d580816d68bf2f9351774ed8f52942b13e23eb5746 +AUX arb-6.0.6-glapi.patch 537 BLAKE2B 4b0529f61a089816c0ca8535017db9a9d33ffbcd26a881b740709c639c1e893c93f7a49d2e0b628805edd172ef428360283a41be2c255adf9baa4a6128f04d70 SHA512 249847d0b563460447c7c53167ec50ba541270614943a471aab5c8dccc1c9e253af79746834fd722d33f9a96607e9a382f7ae80fb96656f52d9a143fd4760be5 +AUX arb-6.0.6-tc-flags.patch 1540 BLAKE2B a5a93849998c596b47beaae540648203ff4891f450bef27ffe7e602fc0bb9b61f71b99dc0f98121680e93b3ea9c5e1919e600e431d0a641ab52b698ae4375c32 SHA512 e5bcd297196f473c6cece3e5a28380011f20e5d0389b6de508c4ae0f82f0d6bb4502b755a89b1f9ddf582ab3a9722793c6f7727168b442c08dd99f95799d3418 DIST arb-5.1-glibc2.10.patch.bz2 24659 SHA256 1153e3efe73c1027972ee1b2789ee9841749c0bd2cbb2cc3ad8cd53586ff6f2f SHA512 a490066efc5001e22bfeab8ce3e05690f5024217261b7b71c5a31116d18611a93f5b15aa7d57fca40e2b5e17e64b695873ccb810bd649b2b109c9b710d3ddfe1 WHIRLPOOL 9dd4f116a9050de9ca2f222017acf11ab5574891a64d2ca3043745a8912fc786973b31dce8a4274d47752893a13edf471cf3b9592aa657d8b0efaf77d700ff14 DIST arb-5.1-linker.patch.bz2 4406 SHA256 62080367ebd11ed3c9991bfb872e083e2d747264a400178ab0ec11a3502f3d43 SHA512 44518d500be457d16e7f6cd5f0863d2dc48cc8a1c8abcbaea79eefec5cd063258aea78d03e9601cd0bdea3c7e57949373d7a909eeed98bf48a6d98576f298e58 WHIRLPOOL 3abfd7fa5e8bc5d767395cb61f3a626adf605436d016c1597efd4255cb6bc0a27241a1f6e2149f925f910fbe4fa23c667fc2cfe6367b6d3a73ae1d7928c09714 DIST arb-5.1.tgz 9727285 SHA256 7f0a2411e7b95b94f23c51211461047eb74ffd3dd632552a82425cf903f89dbf SHA512 236f7c40217146cf5b43d15c7252901a09f2081c1da6db1b90d7720d313e21a2808b31879d700bf894b3c576952c43be751fd0027af8a58d953403028589dd8c WHIRLPOOL 10c9d4755353471457390049f74ae5735d3fd1fe13d8ae6ca44829aee40f7990cb1e6c23d60febe9b05f598b1ab1e227c472802218cd3fe9c902465cb6e8e627 @@ -13,10 +13,8 @@ DIST arb-5.2.tgz 9729004 SHA256 cd68cfae317aae378da69c4c4ec8036a2babec064896d0b9 DIST arb-5.3-linker.patch.xz 3604 SHA256 09580d0c1ff54c4956382cef850aecb9008e62e083f3246604cac72f06d05e95 SHA512 8eb072cd5a3c13b2a6ad0e40f3b155096168dbd70a6e13878d4a62e563903742442373a5e3032d6f78beefe774943fef86f6060e89acd0d18b95a7c0d4a8dec7 WHIRLPOOL f77d767c5b5c911ba3ddc9ef5b3e482cb1975b5d56f50b76166bd4a0b55e251e73eeee46709147207b2f3553d482bab99398d8bd03aef8f0b79928a8a66d0bfe DIST arb-5.3.tgz 9543106 SHA256 c40a3f33f39996e3e331fb41acd452e5a20b7e638b856b0b66ea8e07c977abf8 SHA512 faa924b9c6f437f77ed637798c6fe5fe5c2e6a0f2efc9c1f735133fab9c037c7039fc4ef6f6e5b0408fc39ea5c69c747b1887689f4621b608add593d77930282 WHIRLPOOL 9b4723043b4f8b9a68973f49cb7dc8c3cf3558ff646d20f7d4f20f6e4797b6c9a986fdb1dc47178f2c80251db59f61dffd1b01bbdd880f864fc749ef59e62958 DIST arb-6.0.6.tgz 13286019 SHA256 8b1fc3fd11bbb05aca4731ac8803c004a4f2b6b87c11b543660d07ea349a6c21 SHA512 053d4d964d8a299f86d4cab9113f0d2181780bf51e0ccec0459a4d568d09bb4e9723fa8493d8e4fa5c72e6d1f022241721cadf7ceb75ee27142d48f2f9f269b4 WHIRLPOOL 199ad8a5eac7d5e3d84520ba9a0de4bb0202906e3b71746eef929978d5a28c092c7aa204d4035301ceb42f5385c6077cc3c53aba5e8d9c3e3665cf83020387c4 -EBUILD arb-5.1-r1.ebuild 2058 SHA256 333f27f6b3261695f448327ae263c9eb66fd438c33e3e669de09abc28b91d124 SHA512 686ba259e12bc336f08a0c9cfbccf52aacec57dd69abb5bdebff636579cfc564ce59efbb105500cf0ad58fcbc7ffb4876d85bff082fed48dd67849b89a7719ed WHIRLPOOL adb05065919be0b30eba206b04b030f39fe7b5d1a8a27b2d70a39d4223187178bec2d34c1db0c76a58efaad5fe1a2ff3936aaaaf4b41604ce0764f5a6a498b5d -EBUILD arb-5.2.ebuild 2064 SHA256 23a79fd8941c27fefe8484466305b5d5a721edf13edcbe00059792d742be2356 SHA512 a05aabf3eaa0aca33c28d4e7bf89a119797d56b9d1a66c385e03a71bc8125db50236ce73d1f5e3288f0194e4fe7c75637281f13c9f51ca59061bd42e29a97836 WHIRLPOOL 877f403d2ebd8d266f455c260bdfd36c0e9999405751814b62d6bdbd9ae4b84b9ae143c8691b6c4d59625069d04f991c45fea546f7b01e2301f890545e04d31c -EBUILD arb-5.3.ebuild 2028 SHA256 e3d4b5263af87f1377e764543018e15cfe68da8292c72dfd6cc809cf6eb95572 SHA512 d614a2b107b0bb9b0e0e1d9fdf647215165a7844cd73fe34870f24f3cbe1a50399e3e790ce202019eb90a42d0d122b20dce2a45bbdb2c134d9520666b79844a2 WHIRLPOOL af225d222868e36400859b485ea155c443db2b7a075652704aac29281bfe613693ccab1a4a464cdc4e5b9d783e60f4bc92811cc3563e3bd4f673ffabd0887489 -EBUILD arb-6.0.6.ebuild 2482 SHA256 456a1f84510a28f0d713210bee78fef688ff133b69cab7310517e75bbec9765b SHA512 afb90afeb3d01aceeddafd52b0e173c240a166e325298ac3eecd3fe130ef8248237a13a6d42c81d66f3103343333a80a19d84e2c077ba6c6ddaf1efb271fa14d WHIRLPOOL d9aee00dda9023efb2f606b35685887a21876480ec736dbc4a73d7439936c3e6db32a289e7fa4b1166c4db3a2fce715f9656d47622fdd6be24243047a1e6c8bf -MISC ChangeLog 2829 SHA256 521f731051d90d9c5c6527999b6e946a9ee46678145c9d54ae4a5b32b502f35f SHA512 b464847b77a6a2a7e24dfba0332b8ef38abb030b19b10df977869bb7198a04c6ee2e6d768515f17376b3a7db159681c36b35085bf4bcfb60d87657fe536a5098 WHIRLPOOL 180a966394f15fe9bc1c442ce05fb3c4a4e03c206604a6dac388375593b06b58698fe5b78f47416844103f9dfcf10c9b4f2f0cc0d8bf57fac7ed445736b6d682 -MISC ChangeLog-2015 1976 SHA256 6fc35aa3de6891c63a3606d78ecd30e81f735d898039e324ddd6bbde6835845b SHA512 5ac257c7afa34f964a02a2236e8e0314bf7848fd6829df73a022d550446b49b5de529c19c190f89691cab272caf0105c7ee2d9d70755427c1a3043c7d849b733 WHIRLPOOL 5c0982b3243f24cf774b78ab2ed1534b4232a45b0b87d4a4a79e2db32591c95151fb7d2a262f9a006305fd32a26d30c273206656fad23292264930ef45276bd8 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD arb-5.1-r1.ebuild 2058 BLAKE2B 72c6e8816e06ca0880a7196584d5a372cf82036ac15bc1e70f0f44b3f84937a99e090cba6577a799f2760733e2764eb7cdac6b561f22f13c7a941dacd3ef0048 SHA512 686ba259e12bc336f08a0c9cfbccf52aacec57dd69abb5bdebff636579cfc564ce59efbb105500cf0ad58fcbc7ffb4876d85bff082fed48dd67849b89a7719ed +EBUILD arb-5.2.ebuild 2064 BLAKE2B ca231f973b29c4e952b33c5055aa4e94d27f29fd28e248494a1a603a1bd95ba159b86e36a1cfdd68772a375db0c4bc5f0096123766bff79125d2df3fb66e852f SHA512 a05aabf3eaa0aca33c28d4e7bf89a119797d56b9d1a66c385e03a71bc8125db50236ce73d1f5e3288f0194e4fe7c75637281f13c9f51ca59061bd42e29a97836 +EBUILD arb-5.3.ebuild 2028 BLAKE2B 14281f761050797da0b40a797845d59292c089a2dca6b65455252d76cbcac240872d3c6a3629ced8315792c90ab9bf246b08e5b915aaf163a4c9b77c7e796a1d SHA512 d614a2b107b0bb9b0e0e1d9fdf647215165a7844cd73fe34870f24f3cbe1a50399e3e790ce202019eb90a42d0d122b20dce2a45bbdb2c134d9520666b79844a2 +EBUILD arb-6.0.6.ebuild 2482 BLAKE2B 7ec03e43d84e8c0f9ccc1465a0c5da113224c02b068dddcf2c3712930d1b309789104f8c074511f243ae8fcc76554bd57d4f2ce3eb73ff23eacb523451d11906 SHA512 afb90afeb3d01aceeddafd52b0e173c240a166e325298ac3eecd3fe130ef8248237a13a6d42c81d66f3103343333a80a19d84e2c077ba6c6ddaf1efb271fa14d +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/ariadne/Manifest b/sci-biology/ariadne/Manifest index f65f5231299d..8069ffd1cd03 100644 --- a/sci-biology/ariadne/Manifest +++ b/sci-biology/ariadne/Manifest @@ -1,7 +1,5 @@ -AUX ariadne-1.3-gcc4.patch 207 SHA256 8362c7cc50340129e7c2f76ebf6333b15c59d4a6e01f24b40ba0032370987b0e SHA512 81750d979dbabe25867daba2dd658eeb1a8e1c04560d2fc067ece20dc3e92abaf98aceefd769c79be87bfcfb18902cb2042a3abbf9c47f79ff281a02b0a9d249 WHIRLPOOL f862b3c59938fedc947c5bd2706aac30dfba582f3831bed05bd25d4f0064d2bc961b7073e3c025e7303ae55b612ea7ea548402af02f329edf538b1d802de3363 -AUX ariadne-1.3-implicits.patch 480 SHA256 994186ec3843ab228e00f3c30c96e5830dfe76da91a7ef59d58f75e6ec2536da SHA512 014dddcf7c3c107ecd77acb9d0110c50bf864cfa20959283ae868a74116d333e2a09749291882f12fffaabed34773e52c9cba5d0b7e476d1e8a14a7df5091a84 WHIRLPOOL 1690e687a4e04ceb59207c55a6a0011d28147843fa29120cec9bcf6ab24e31f1daca9406e2b6162dfb4463173b75eb754626366b7a424a7e6a44aaa791023dfb +AUX ariadne-1.3-gcc4.patch 207 BLAKE2B 28c92410a33cd08da76de7631a64f21f65a4e576ec0fdfceb29a3f8c315b6eb083e613f8001c18c5f777f0a7e772af8cbebbbd5640144ea0cc9e5188d6e11f39 SHA512 81750d979dbabe25867daba2dd658eeb1a8e1c04560d2fc067ece20dc3e92abaf98aceefd769c79be87bfcfb18902cb2042a3abbf9c47f79ff281a02b0a9d249 +AUX ariadne-1.3-implicits.patch 480 BLAKE2B 5ff0117339e47bb3b0076f1db5a58d1f55bbaed7522615e5f60a85fea6da5aa48fe04f6550cf16b001c949c9f203a5c01f6fa3109ba4f4b2a327f04e81eab4cc SHA512 014dddcf7c3c107ecd77acb9d0110c50bf864cfa20959283ae868a74116d333e2a09749291882f12fffaabed34773e52c9cba5d0b7e476d1e8a14a7df5091a84 DIST ariadne-1.3.tar.Z 69427 SHA256 8b6b0acb6e8d02b1303d94b20906bf2bf1dee3de4eceeb1b927cfba7a96fd00d SHA512 6c803f945bbcf36c08407e907ad716dc7cd01c7bed555777af46a5dc626b56ca3d1de7d16cab82bfa8bd5a91e06f42c590c0489594251405999459459e9c7289 WHIRLPOOL 460d8acf2bb49e097a9544ecc089ca60c3478b64ab4d903bd6ee801eccd62fc560bdccf1454c9f22632081cbf1df35de09a4f81d6c131d3f52f36753bc692927 -EBUILD ariadne-1.3-r3.ebuild 904 SHA256 2b02c45f7d4e66da3684cef162ee77bfa190e68daac3ec63a4ca75544a683811 SHA512 eceba1b9bf54353df40f061deaa6925034d4bf029a735adce713e20a93a014fc921bfe50cd1caf1befce59348d7f15cbb5d4fe52f220534b05d8c1b3592adaf6 WHIRLPOOL 7425e55a035c7ddf741738387f0e71499adf1bfbf6cf7e950b44ddefda4fe36c7d90a66a962602cfbd38acba8077a3965b13a58e5e1564fce3978516a6743103 -MISC ChangeLog 2555 SHA256 40a8883ae9a28fb0016421f602f8552bfbeb2ea870748397eca80ea7318be879 SHA512 bccf46011df1058beabac685cfebb37063f87e88cdcae1cc7b0bcc8a140ae1053c702fb4f72a4276656f89d1ec2ca139b459c23bf750caedd4dcd1bcbba304cd WHIRLPOOL 5024abd3b8608abedef84f70af53479829c24d8e91128a0f10e87d959ed1bc0c1de5972624aa7dc21ba319dff939a7618db1a3ce188286aebef8f084c322fa22 -MISC ChangeLog-2015 2027 SHA256 65cc77f47568411aa45c916571e6dafafa339568ebcb235cc99cf0f7be9d9a6d SHA512 a63f1a231c2096a8bced1076b9a733e06824ed481de950929d3749cd90a77b61254b47efecb426196ec66daf5b25bce068b45d1c38ac04d26e446cc3427d8f5a WHIRLPOOL b00873b5b4bb252e3d8b860cacd030e7db9460b2a2b86880479c9debde6b5fe23b3c5d051685bf53be7b1e7e15caed0fa69ce94682007d26961777c3bb9914f6 -MISC metadata.xml 954 SHA256 aef3dabcfb12e924a2557c41f1e043866b164b90bab8f731347d239c4fb7df0e SHA512 07101ae5c65d25810f0b32e5bef44b2ee078e858e17ee4b1351f444dc95ad746417f3684206c94487c6203bfcdafc5b0c67b17a1fb5fbfd4ba7a74009bfd2743 WHIRLPOOL b41dfc704c477aced682fabc75d70d93376b33e31ca0432fcbcafa2886641b69291cc55ff149f71edbf33f69725d3e0261cdb97269977a9b9412d3910e08f825 +EBUILD ariadne-1.3-r3.ebuild 904 BLAKE2B b5f9b5240d431a690509c10016b2377ce8cfb491789b011b2ff2effab857d3127cb6ab7cdf0043e30f9eec0e3b868017f945ba9805eb1823ab63b900cdfdeb5e SHA512 eceba1b9bf54353df40f061deaa6925034d4bf029a735adce713e20a93a014fc921bfe50cd1caf1befce59348d7f15cbb5d4fe52f220534b05d8c1b3592adaf6 +MISC metadata.xml 954 BLAKE2B 1e8f172511ca1a79f772edf35f8a5fbae6c7530f75cfaca3a0b1e2e2ce724818ee8dc7e2545305cee9d75bb91ca777fe6da4db4b13bfcd318bb8dffa7210bdc0 SHA512 07101ae5c65d25810f0b32e5bef44b2ee078e858e17ee4b1351f444dc95ad746417f3684206c94487c6203bfcdafc5b0c67b17a1fb5fbfd4ba7a74009bfd2743 diff --git a/sci-biology/augustus/Manifest b/sci-biology/augustus/Manifest index ff0fe1247ee3..9e9013d0866a 100644 --- a/sci-biology/augustus/Manifest +++ b/sci-biology/augustus/Manifest @@ -1,6 +1,4 @@ -AUX augustus-2.5.5-sane-build.patch 5271 SHA256 0e8692203f1cc994398bc639d101b2be915c4747a5d234d0d564cf0ada6e9ebc SHA512 5afe12b51b8ce27ef32e8e66dd72be451022757228b4c86dec938b26870885bee06712438a22801a42944d2def8ae8bf4a2d7fdb82e12455c145abcd6f0c4aa1 WHIRLPOOL f6bde27abe50c567a2a07ef61ce9c8033592261b26a61828eac9f6d6e74b104220a986d9bd57138b74375a747e2b9c619a49e7a6865be4de037a288b7882186b +AUX augustus-2.5.5-sane-build.patch 5271 BLAKE2B 1ba799aa4d9611087f1455f334dc35616979267bb546aa2ab16f6c8d3d528af84373da482840b455d4d0f0374af24cc3010f6925d4a93c0eb7abe524544fd408 SHA512 5afe12b51b8ce27ef32e8e66dd72be451022757228b4c86dec938b26870885bee06712438a22801a42944d2def8ae8bf4a2d7fdb82e12455c145abcd6f0c4aa1 DIST augustus.2.5.5.tar.gz 70826249 SHA256 2bd97784fa651addf836e2100a7d4106b43e50fe06f13c664001d4625d0eab9a SHA512 33eb05d5c90200d2fc17026743d3a25e73aa3e217b8546f0bed4c94bcb460597d853377a67896e52e45ead5d736d13ed3b2c91b31fed8216da2920c825e8c20f WHIRLPOOL 875f56f10251767fb066b5e21b0c2361c952d5cc44daa811658be8119957ffa34fd4552fde7e17384d5bc916aee5ef91982ded3999d0077cf3834d5fc20e7f1a -EBUILD augustus-2.5.5.ebuild 1010 SHA256 033f5e2e2b896c957d5d8967453e0b1b96f678f29868c8b5eb851eecbd8df0c1 SHA512 6cf6076dd9c1c957302f5ec65867b9055a29e4a893f925bc18cb96cc7c57509e65497013e574a33dbe718f0aeb4a25422078874cf0b85603b30ca40abe81527f WHIRLPOOL 2bb05518431d7bdd3668ec1d6a2b176c2ef1dfcb7d64795ff8cc3cbc17de24b92673f85070f0fd456010a5be31660366863240d105cf2280c2cceafea2df3e7a -MISC ChangeLog 2473 SHA256 2c4273e98146a8dc38d829552338065b456a56e357159e132118fdf965ede5d8 SHA512 062913083dad8dac702b249e13c9ca47dd724251bc87ee8544b2e22e5a8dab6e85359a285da508d039187907df52ed34ba6f9c99550d9517f7b07425278dc5ef WHIRLPOOL dc3e0173575eeb291afb2e72623c1e13919f3c9b6ecf2bf25fd59d2e98114b55b146cd36e1b7d5facbdd8c72125911d0812309e7b83ff06cdbcb250e0f88db49 -MISC ChangeLog-2015 2694 SHA256 e16526a6f364e77aee894fdebdf37d30122ab4160720c02958d7f5da49a5d431 SHA512 6c32e0eca978ac36d1eeaca4bb8319ea279789709a09ebe00dcd3af6e581c877d1f09a6391e3c92fc0d616354bb7c6661c961a13d2256f7df5a14f8c3874d5c7 WHIRLPOOL e01995e98d2882ce11571bb9c9990de20d80d1fe22a126f295fde66b36fbedd2f5c3e3dfa00d898c2c59a3c5799018c6729a459cbb697f9ddbda24f6a5a3c4f6 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD augustus-2.5.5.ebuild 1010 BLAKE2B 4c1e6fd9b147423f33a430395d98b228504eb8a1836f7da5e9e88348e94c356cf52a228ff43978e858a82f48e5d75cbc1d58f18ba20f7459920259191da12a2f SHA512 6cf6076dd9c1c957302f5ec65867b9055a29e4a893f925bc18cb96cc7c57509e65497013e574a33dbe718f0aeb4a25422078874cf0b85603b30ca40abe81527f +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest index 06780cfab7ec..91aa94290bfd 100644 --- a/sci-biology/bamtools/Manifest +++ b/sci-biology/bamtools/Manifest @@ -1,6 +1,4 @@ DIST bamtools-2.4.2.tar.gz 548095 SHA256 04165bf8a7566f4be1a6e68f69bfdd9f08364ba7b0d2f6687302434641408102 SHA512 244a63609c0b10a85bba7cac210a27ea9abafba136e9c91fc789c7aa21a6cdaa7622afebc50ec8d30d4446872d5206dbd3d679ca03e95ac90771c87359cb69a0 WHIRLPOOL e1ed40d1ec47cbe97c4de160671f34095bf56f5786ebcc0cf7fb7b5e4b129d9c562b1cf19fb1d22e3ef20fa21d45f1fe50640b9d9919c01fabed044f82c9c2de -EBUILD bamtools-2.4.2.ebuild 818 SHA256 7d7ef85520b8be769cd708dddb19006c0553570a1d7583b03fda9c611196023c SHA512 9073703d58572f8e517b5ccdf5059d7643aee3c0090eb30d5debe75ff091d1abb2b7f29585554bc81d5e18822f5867efc2fd5c20aef6c4d707253f2b80a0bcbe WHIRLPOOL 1e81adcf6dfa8966a2847bdb098b9762f97d9a0704f88d5922495c3d0cbe909245ed14a33b31d0206b3d3bb33fec8ecf5945391668ee0a9ddd35d4c366e896ec -EBUILD bamtools-9999.ebuild 818 SHA256 7d7ef85520b8be769cd708dddb19006c0553570a1d7583b03fda9c611196023c SHA512 9073703d58572f8e517b5ccdf5059d7643aee3c0090eb30d5debe75ff091d1abb2b7f29585554bc81d5e18822f5867efc2fd5c20aef6c4d707253f2b80a0bcbe WHIRLPOOL 1e81adcf6dfa8966a2847bdb098b9762f97d9a0704f88d5922495c3d0cbe909245ed14a33b31d0206b3d3bb33fec8ecf5945391668ee0a9ddd35d4c366e896ec -MISC ChangeLog 3972 SHA256 8b369e24d7cfebf3ba8b90196888ee34c780102a93139d1cc49b852fe3501aba SHA512 bd5ba632447931f31d1f4d1aa62d51cd970105534943c20be9b4e3a1e4bdc430fd22b3120ebe6a55166c7813c5826326cc3b68bf5f6fb32ff178ebf8b290b18e WHIRLPOOL 2b88ca8cd731e74cefa3bf3303680de5e2e357f70005969b35dc0cd947483175e6011b0c9d73d2a515e5accf11337e54b580825a119fca5d346a1ab2310361de -MISC ChangeLog-2015 2233 SHA256 ef7f962abd2e9877dabc290266685ac5e02a67eaab0a797d9bc7579ec290d317 SHA512 beca82b599829c681d5a8b81cc5c473205ff8199a97e1bfcad8b58a0e67247023bb8e6f3c87f493c46910c33729a2a0bf10369fdf3f251846a7dd38797d54f89 WHIRLPOOL 7a511f4808aaf95e48ed54ed6c4b84fa6ea7190d1edbe738b84e163ab05c408cb81e4cec864c3042d35cb6f681169103df7987cce8559607813dc9bd7c602578 -MISC metadata.xml 881 SHA256 53bf4f753cb3cfbe3661d3c51ed666026f7fe669df50450dc524a1e3ba431cdb SHA512 4922e3edaa65c7981b8656245287e4c4d613f8ba6d6b63131fe9e5183f8119eab5501e354ad80d37d8f61f56d86513af2aedd2b086e5da3d1ab48b3aef57a18c WHIRLPOOL 979a222333a4c0073a7105e9593aa139541735a27fda813101d0c187a470112ff94a78042f5a11b3601bf680c5cd75ace3f06117fbd045dc7627d2c30e5f38e2 +EBUILD bamtools-2.4.2.ebuild 818 BLAKE2B dd6d86de8ac663a5b08de3eb16e024ca355974d6265d4cbc94e293acb80dc6b704a576b4646e8f0d84a45d4195cbf5d0d9a2b13ba1e8552c5e27e0614cab3efc SHA512 9073703d58572f8e517b5ccdf5059d7643aee3c0090eb30d5debe75ff091d1abb2b7f29585554bc81d5e18822f5867efc2fd5c20aef6c4d707253f2b80a0bcbe +EBUILD bamtools-9999.ebuild 818 BLAKE2B dd6d86de8ac663a5b08de3eb16e024ca355974d6265d4cbc94e293acb80dc6b704a576b4646e8f0d84a45d4195cbf5d0d9a2b13ba1e8552c5e27e0614cab3efc SHA512 9073703d58572f8e517b5ccdf5059d7643aee3c0090eb30d5debe75ff091d1abb2b7f29585554bc81d5e18822f5867efc2fd5c20aef6c4d707253f2b80a0bcbe +MISC metadata.xml 881 BLAKE2B e7feabf909d8dbccc784cd2e94d07882d700433e773ac51928b796f4bfd22a7e8de7a4d99268dd8ea0f8d36683f5bbe9f3c4fcba37fc85c284f49b9ad7d413e0 SHA512 4922e3edaa65c7981b8656245287e4c4d613f8ba6d6b63131fe9e5183f8119eab5501e354ad80d37d8f61f56d86513af2aedd2b086e5da3d1ab48b3aef57a18c diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest index 9f3fa1a6c35f..00802ab247fe 100644 --- a/sci-biology/bcftools/Manifest +++ b/sci-biology/bcftools/Manifest @@ -1,5 +1,5 @@ -AUX bcftools-1.5-buildsystem.patch 376 SHA256 fe15af0cd646dbb51041f78d00287696ec70d19b592f8f1f9967b373a81ffbca SHA512 c8ede2be5205ab287843662e7b97ecae8d4fc7d2aaf09e0b9fa67f5a3168149b15457e73c2c9d8b74fcfada08ec5c1bbe61013a2ef434ee50acf56eccabf6723 WHIRLPOOL 590ff61577c5b55c553d37dbe7a421fa71c4f4c5648df8aff45d68027ee419574400d7660aee29f5f586fe73f3fad2bfe7893c3954c242a02d8d0c2faf00bc8f -AUX bcftools-1.5-fix-shebangs.patch 594 SHA256 a2360809840fe2683c0c85edae8977f62eaa923b77c66921c69031ab35e8b7a7 SHA512 e00cc0de35ad5866f7321408a7995f054f80e37e642b6c3097c5e786635dc61baefa7ea8847f2222d32196825e3e44209d63fdfd219c54b09421a4bb310067f5 WHIRLPOOL 1589c582746650f357a3c28428e3900a2b6e56c3ea7bc538f4dc141cfb5112b467020e3da52886e4ad54929a02e72bd3411185ff623860062cf9a17309e42e1c +AUX bcftools-1.5-buildsystem.patch 376 BLAKE2B 384bf91c3af4f98c76c0ab6fecdfe0ec9483b77c54517df0ad2703441def7a7a6982ee792ae1775414ab8cec43d0e65ff6d2187be7cb85bb42eb5af8f9b7283e SHA512 c8ede2be5205ab287843662e7b97ecae8d4fc7d2aaf09e0b9fa67f5a3168149b15457e73c2c9d8b74fcfada08ec5c1bbe61013a2ef434ee50acf56eccabf6723 +AUX bcftools-1.5-fix-shebangs.patch 594 BLAKE2B 28d0a58627dcc1b1eb8f546c73a88f76e3277c82772f8a7af814d9ff3bcb116751b065166661c486e8c6b1708a54de227a5ef65d18a8527b38f5119d744539d2 SHA512 e00cc0de35ad5866f7321408a7995f054f80e37e642b6c3097c5e786635dc61baefa7ea8847f2222d32196825e3e44209d63fdfd219c54b09421a4bb310067f5 DIST bcftools-1.5.tar.bz2 2975685 SHA256 9ff75a680891467776d7064f41deb6be7a595030ba807494727cd5bee7842301 SHA512 66b8bc61b9fbb381679a6781f77a18f66e8105567992da011413bc573d99b619558a1cf58e9e1373ae347a8b81638dd91977802a07a4578ddc9c61fb53403233 WHIRLPOOL 86b827d91351d8adc026a1d851bb708e35febcc36a947532662857787ec1da6eea2c88a684b15164638b7f9235f6a6f92f4d10618e1719aa891c44c69aaece77 -EBUILD bcftools-1.5.ebuild 868 SHA256 0fe3b3b2d2fa16dd56ecb5bc23f10726795ceb1b94feebd05bf596f60610bfef SHA512 e0aacba5fc54cbf7a8d64db84e52f28baf8df36fa01c63fc167998c6ec5ef65a040c0725f445970f32888ae947b89d50d92dc2fc704fdf63a8a900762ec367e6 WHIRLPOOL fee65a5eddf312b477af061eb12556b45e68e62b5e4aeeadfbb3bc8d2da5e06f2e918f4bba370454f696bf182b39c8784060bfcb6a499f8bf09d3d02e9e8e2ed -MISC metadata.xml 461 SHA256 3e79956fe4c68d09a8a6983aa31ef61f484856b31671d9f99a1777a20f20bc6e SHA512 7aeb561d33cc1f47dd319d58b5fc5914aa5dc900a6cf0b6042556417ece3a31b809ad9ddde645f90725f44bb8ad82bf9beb2e279095df86a2d73ad0a4305b4fc WHIRLPOOL ecd91f17dae9d1c9a6262ae2ee4ef44b3635b20e26ead9a533566c96d74665df4a1e792e26e5bf69d704dc40a8e415c82f227511735d604346efe7ced9ee6baa +EBUILD bcftools-1.5.ebuild 868 BLAKE2B acfd6758e27cb9ade023d91074724affd0fa3016af565c809819fae615be61ca8af90edf6b38eaf0a4ed5f3e9eaaa19451096b8d7c27a58c6ed0540bf7260784 SHA512 e0aacba5fc54cbf7a8d64db84e52f28baf8df36fa01c63fc167998c6ec5ef65a040c0725f445970f32888ae947b89d50d92dc2fc704fdf63a8a900762ec367e6 +MISC metadata.xml 461 BLAKE2B ecbe7972dac114bbd735eb4cc9d1a78d0319e7897d6db12f3d889bdc7785bdeb27bd25501d6194fa8b755e5d5e649b4b623b2cf5905e47a850245e08957564dc SHA512 7aeb561d33cc1f47dd319d58b5fc5914aa5dc900a6cf0b6042556417ece3a31b809ad9ddde645f90725f44bb8ad82bf9beb2e279095df86a2d73ad0a4305b4fc diff --git a/sci-biology/beast-mcmc/Manifest b/sci-biology/beast-mcmc/Manifest index 42dfe1981f0b..e39e8453267b 100644 --- a/sci-biology/beast-mcmc/Manifest +++ b/sci-biology/beast-mcmc/Manifest @@ -1,6 +1,4 @@ DIST beast-mcmc-1.7.5.tar.xz 40516312 SHA256 905248cbf07513a0d11375656391d86e310d28f07b6fe78de6b9768eb2548f4f SHA512 9b2ab98fdc5a173e8d9fc74d27cdfd8105e9685fdcbe69a373666e77b6865b74fdd87dfa404fc4ab5bea927728d5b6b35fabd5e376a66e5f014e978952797937 WHIRLPOOL 2daded22cfd59b3b44908ce27f4ef61178f5d174de02080a7e94ba311462f482e381556d4b81bc053e33e1c4bb193d172f2c23f331659b3548f7900d3fc297d5 -EBUILD beast-mcmc-1.7.5-r1.ebuild 2906 SHA256 9f36131b95bf15763235e913fe720760f217e6c789b352cdf0cee32d82ca870f SHA512 1bc83f37bd0bfd2477bcf31e7206d1d4337c24123870a407aac2b2ac69ea65d52958930dd2d5c9c961b862f3e7935356809aefbadc8938b7798125b4ebec7ac0 WHIRLPOOL ba33e77030a822941599a9311e079ddd669407201f8065f467ca3eef06c1b5f4da435dd45505eef9037c2946efb6313ff94569bd3e2e7f5f79cca9bfa44ceedd -EBUILD beast-mcmc-9999.ebuild 2743 SHA256 72a683da9d25129601f93d486b7539c9d9d01afaac322742147199ef169b1629 SHA512 d2860b91189860b027ca7f10026e99df5e5d447912445061fa09aa770d10ef33ed972107355df15d5e7c6f034baefbb8798efecca3e7132852183c2c9bcc0ed1 WHIRLPOOL 0f4f4b25cd91735ab935f43f1b76d57fb51afbb4104190577c0c60d55c9255b611362e4cba4f08f4ed385bb0c21371cd6382ea1eb1b3509361ada3bf0da28eb7 -MISC ChangeLog 3648 SHA256 c343a586829fd9422063e1891e6cca19e48755007d9b789357e146266ad1dd1f SHA512 36ddb6176cf1663861d3aa4409cfe3b51a7ac296baaeb5cccf56f4cecd80569665fb8542999a4afb5290b09f8a05ae887f5487b8a781da67253273b38bb7d420 WHIRLPOOL fee385b5fd2f98bc1f8e3949d0b627c057da506172e4955691a0bab92257f4e107adfeb0374f2b2fdc116e97bb906c088a25efcebc3f7c069bc8005f56bb2000 -MISC ChangeLog-2015 1088 SHA256 22102992e5ea52840e6ebd312fac6ae891fa3c243d27b81eec35ed4df7dcb568 SHA512 8d69f4a97c447bbff89a6c4941851c89843bb5735a167292a605e127f23adbf9d01d8a7d4245bc7d1f567c685573957049b1e2137640933a15a050811b3d66a1 WHIRLPOOL a059171d64e19668d5aecc1b7c3ea0c715a4034d0416bf347ba9d9a4e744c037a3d3038949c47b5c44d680ef01de49fd819980859a4668cd60b15cb104a2209a -MISC metadata.xml 356 SHA256 caaf423fe7d400f1973478f9248fd0d546026a4f9c2c65f20e9098b9ef2cc3d3 SHA512 fa6d4dc538ef266e20cfb717dd6c7982c9b88e7b5ab3fcd11074ab41be660ae2f8a0bf55bc5abbb1a669ad64c3e46c1dd47cc8761e7e4b5767cff7d2da661dec WHIRLPOOL d87c7cbd33ebaaa4784ebef3a12ab510cc9b9b923cb1ecd2b1df2045711cd373009ffac6550ba75dde66c7095ed0326b36d6cb749a1e09efb4a638ac6009076c +EBUILD beast-mcmc-1.7.5-r1.ebuild 2906 BLAKE2B 4fbb1cbd387f6c988c48ce77eea753d3e5b5f82b44af02c9e025c4c086fc2d0ddd48e7dbdc3e1dc3f527093d539785ebc27af9f0989279e26ce2219961f46788 SHA512 1bc83f37bd0bfd2477bcf31e7206d1d4337c24123870a407aac2b2ac69ea65d52958930dd2d5c9c961b862f3e7935356809aefbadc8938b7798125b4ebec7ac0 +EBUILD beast-mcmc-9999.ebuild 2743 BLAKE2B 69ef6c55609cae9938b2ef6f870798699e03ea7c6e6b4b01b489f39f59d5c380f91d1d8090fef895272684a7f3a49dd00377c8da0c8107c3fa8e10c3df6a7469 SHA512 d2860b91189860b027ca7f10026e99df5e5d447912445061fa09aa770d10ef33ed972107355df15d5e7c6f034baefbb8798efecca3e7132852183c2c9bcc0ed1 +MISC metadata.xml 356 BLAKE2B 57c13645d9bca2bcd9339fb11f7136cd5bd20e35b97aa1f46f67967dfb0b398758ea9f61688f4f6cdd7d5220a8b1ebad1f73ffc2e30f8cbb92c073a7b22d5d69 SHA512 fa6d4dc538ef266e20cfb717dd6c7982c9b88e7b5ab3fcd11074ab41be660ae2f8a0bf55bc5abbb1a669ad64c3e46c1dd47cc8761e7e4b5767cff7d2da661dec diff --git a/sci-biology/bedtools/Manifest b/sci-biology/bedtools/Manifest index 7c948a833063..dcb1662a4644 100644 --- a/sci-biology/bedtools/Manifest +++ b/sci-biology/bedtools/Manifest @@ -1,6 +1,4 @@ -AUX bedtools-2.26.0-fix-buildsystem.patch 26994 SHA256 a008b90271114e999f23607a98bf0a069dc64aa5ae2511ede2c6fd6569ab6e10 SHA512 16b4994a9e3bad0a17f0be94fe9412c6c8aee2b5d909007c655fcf3de60c221d3f9ddbe558df7e54466481910d5fa9b871b8123d9bdb1e7c695682990d2457f4 WHIRLPOOL cc0f3e84ed90cb909d9e2fc258f5c50ee8a7361bfd52824c5b2f57bbc13f287712915486caff59c74c1f35c56cd0eccadb13547b59230076fbff35425ca70666 +AUX bedtools-2.26.0-fix-buildsystem.patch 26994 BLAKE2B 971281e6cfc317729a3a294822d52a2c897988230a538eff0e368676c7518bf4f91dafdd412acb29bab5fccfa564c04c733567e27a4c5e3435c3bf95b0819096 SHA512 16b4994a9e3bad0a17f0be94fe9412c6c8aee2b5d909007c655fcf3de60c221d3f9ddbe558df7e54466481910d5fa9b871b8123d9bdb1e7c695682990d2457f4 DIST bedtools-2.26.0.tar.gz 19939711 SHA256 65f32f32cbf1b91ba42854b40c604aa6a16c7d3b3ec110d6acf438eb22df0a4a SHA512 b224adcc09322e90ef389e8172e14572b68f164185fe1a8814db1c47bb4f15656ca8c0ff0061017eb54d76affbe0d0f5793d893b8ab489b56eaf0818616a5def WHIRLPOOL 8d6e3b58dc38d7ab91482ffe5ee773953864ca79bdbf005b17fec51952a869b39bf775d836ed34496a7784565bb84380eef284e285e842d52229fe2fc6a214b2 -EBUILD bedtools-2.26.0.ebuild 870 SHA256 bb1f9d1336185e0e82c31a6a2592f2425c24c19c5143adf85915e0d44b68d65b SHA512 e6b4a079ac25c4d397b4377d5adad5ffa66e690c20d33c5ed7bc2eaf72f00235395232b574ab266ae4373ede77296e067f41436303ff4e4836e67eca7a3514fb WHIRLPOOL 17d53a38905e9b4a75a15f9be653dcad8e3a9165e7970cef11c35960b84e90794b06cd5dccd0a5793912fbfef00f2d2a328b16cc4fbfdf1886e035a9af645a3c -MISC ChangeLog 3884 SHA256 5c396ffb716f467ea0e23be8985e6ab124d0839131e49b2f873e309015d482a7 SHA512 58422d02e2baffe394db4dc914dc1985917c429c5a39a7c29f4238bb707ce30dbd45ef542de20451623a21e9e24ad8a0ba482577d9f0c2f8da1fa99b2fbfc95c WHIRLPOOL add4afc88654155e9c8a5be5760fc51923e58c1e72e26236015c2d0515041f473c12dc266adc11feae5cbe92db286c2da2f1aa2bd0e6d61fb579c1addf534bb2 -MISC ChangeLog-2015 1271 SHA256 d1b4c752bd7af15afd10e1daeaa15b4e2a65d196043b13f292f6e95004b3f55e SHA512 dc761058ac65528750f49160eb143d88fd3b4bb24df639e83c0293614e4d88a7a08bf274c549ad7a242459588d15675a760616f491c1ac31ce90de13edc7d512 WHIRLPOOL 7792d1d4af1450e663db0ed687158c67107a5fa9b912740e57173765702fd96412d4fcad8109564c433ca15566ee9e97ca205aae2855aececb45f46719bf3699 -MISC metadata.xml 761 SHA256 31b82efb7f094f9830ec864ca143ad2c4898ab46462c47287a3e223b640d595c SHA512 2d98b9559ef00bee2b741f9e7d22645442ba161f3cadb32c6366b39fcd71b6eac52afd210f59ae709a15cba36a2d0a47341345740e0cab6a1f6bfdffed064770 WHIRLPOOL e588f733faf174b57a9cf0a4af112fd68031171726942f80eff5ea69b58239fff06b8dee9c8ce7eb79eb18dfd5ea3ef51159295aa68ae36af8162f3268676688 +EBUILD bedtools-2.26.0.ebuild 870 BLAKE2B 99ec3ce092c728e9c71b6801ee8eba9fbe0dcd003e9a62058111bf33171fe5d34003f33cfd260a1b8890f36198e0d62e9d71a5cd41d6e9e91264332cc77c2535 SHA512 e6b4a079ac25c4d397b4377d5adad5ffa66e690c20d33c5ed7bc2eaf72f00235395232b574ab266ae4373ede77296e067f41436303ff4e4836e67eca7a3514fb +MISC metadata.xml 761 BLAKE2B 35d57919e32a4b8bd6070ab5a513f62578394d43098d9e7b9b0765fd57d684c049dad9ec1b315044518bf01535d505e9d9d3fee540308df40c0b70886db8e49f SHA512 2d98b9559ef00bee2b741f9e7d22645442ba161f3cadb32c6366b39fcd71b6eac52afd210f59ae709a15cba36a2d0a47341345740e0cab6a1f6bfdffed064770 diff --git a/sci-biology/bfast/Manifest b/sci-biology/bfast/Manifest index ae8b11de2851..99c77c5c8de0 100644 --- a/sci-biology/bfast/Manifest +++ b/sci-biology/bfast/Manifest @@ -1,5 +1,3 @@ DIST bfast-0.7.0a.tar.gz 2456617 SHA256 ed8de49693165a87d5dbef352207c424b1bf6f670a83acf49a4f4f188444995e SHA512 16e7ec5101c478f0dfc171016cbacb2b9240773e43b2d40eeb42d0e47afcee50a6dd5838e043a0326fc1ca9a87d3e55b42326a7f17b7c5654ef9825913860836 WHIRLPOOL f9098c00a2f328fd5116447aae86f0aed078f6c2e6a49a4459e09f0c2a2023e0d60be1893fc2337b85444c24efb2636953517eda2ced336d1bc6dc8d94706e6b -EBUILD bfast-0.7.0a.ebuild 878 SHA256 ec3a4a2eb673c05e4cbb0fff60357484ab8299d29a0bf0618a096377c1e70877 SHA512 1250f77e618c3164126e584cb85efec65afb4a8884ea30c8b4418ee812907824945bbc945893e48eb45c21ee3b082efb235616c891507c3494e81341c804693c WHIRLPOOL 446f781c13823263183403d9bb54df384f36523cc77d748287ff473ee03ce442b79354d098c960d63fdbcff904840892633f9c9ee972dbae1f94e68de1feb190 -MISC ChangeLog 2656 SHA256 763af98b24b15cd0cdbdbbd55fc573d40d0857557e5e8be7e318bb7769c24d87 SHA512 b3f402df9dc4e3c17b1a9176febbb511214535e96eac8e7805193728a253e2026d394eb807a25985166f94e618f024533eea7d12dae5d889be032cecfa613e28 WHIRLPOOL 613b72c5454e16ab0e387508856c7790378e34d0707ef709c18665388dc28dec5f36cbf74b60e61ca3e374c11f81d989b40a1b94a78cdbf61328fd174b12b02f -MISC ChangeLog-2015 1764 SHA256 300764a645e32c9b02d739f44ad8a482ef89543de3bbc1bacfe827822d8aceba SHA512 e188df2ab81e95fe0b3425936f96bb73625ead148decfd16ca955df1fe43b94365339a3ae607e23fe7d60ef018e1a78967537311ec3cd17498693107fb5752ba WHIRLPOOL ae559877d836e911e6aa0b95af235abb599312f34f2deedaa1aea06885051baa9e00f8835f0d60d4e35ded79e8aac5d80016363758f01dc4aff8295f47603ddb -MISC metadata.xml 346 SHA256 53f376fe43dce55bbb50f5d9b543b66d51b383d98f74c83176b04ac19211a129 SHA512 b402eeeb37be04022693af8692b128bb257a69b8eeb75170506352fe05fa6e7154c908267bbab7af7d38d1eee26ad6d98e6be5f9c8647181aa491b3fb1680b62 WHIRLPOOL 5029d7380a2199fee9bd014d1ea94f791290c1a422b4cbcb84c24e54e0db1a00c8846c2f6f1e119e8b4ad1d74599c1131441abd6ed200e6ce36afb2225f417c4 +EBUILD bfast-0.7.0a.ebuild 878 BLAKE2B 7c1c986d2ac817f88bb22b1fd63cf8e66cc8e6ef45c3ec0cf4aff426891be864d5502d07deaf41f0d319a0ca07766a69a33f25a2ea1af72e28edd329c3415524 SHA512 1250f77e618c3164126e584cb85efec65afb4a8884ea30c8b4418ee812907824945bbc945893e48eb45c21ee3b082efb235616c891507c3494e81341c804693c +MISC metadata.xml 346 BLAKE2B cf096d053302cd40548e541557cbe72f41e81328a93b41a6e19ae88122e9939d5e6414eb6f60ee6e96411f43a073151f7d98ab780858afa16c50c1a5e37f2c48 SHA512 b402eeeb37be04022693af8692b128bb257a69b8eeb75170506352fe05fa6e7154c908267bbab7af7d38d1eee26ad6d98e6be5f9c8647181aa491b3fb1680b62 diff --git a/sci-biology/biogrep/Manifest b/sci-biology/biogrep/Manifest index 768ae234be61..886ba3303c41 100644 --- a/sci-biology/biogrep/Manifest +++ b/sci-biology/biogrep/Manifest @@ -1,6 +1,4 @@ DIST biogrep-1.0.pdf 22179 SHA256 87f6a0952a2ebba43fff265d2396851d0be0b578fa94ff11f7dc0427bf784528 SHA512 b0430bded7529a14e3e551e4c7deeffdbdbbe674b5a4bd68afa359b2a4e9f0b8fb4a6474673d298508fa728cf83a328327860e60b3777e92afb15fa87f076411 WHIRLPOOL 02e4c3cc8dfc15f48107731d8515df60e4bde0546eb93cb20bcefb22a1da4a7d7aef05ad7225330e1b276ad7bd34ac7cc1ff2dbbb76a75631c90679cf821c68b DIST biogrep-1.0.tar.gz 71867 SHA256 15421d79f6f16d6bf9bef132a97f7f9ede1bd42d3fb90572df04a1e1abd8cfd8 SHA512 da07ea6f5f6fd601a94dc1b9495b204affcdc4d5e7fedfebbb65d6382ef0573e43b4ebd081c24909b2790ec2ae532505604112d4943c3e4e6575e13bdcdf1ae3 WHIRLPOOL 3b73e1d0908a7ceebe72a2660c2b13df168449d246411e1a29b3b910951c9932f86f3a829499bc53c22a6b6881097d846bfa6bd95968f246a669076c798af173 -EBUILD biogrep-1.0-r2.ebuild 866 SHA256 fc2988a8d36935d9cf577200fe42ce313b1fe5302f2e437e1b7a2ad7609aed9d SHA512 224009fb74306670ecff19a0c9d271608aadb20fea285ff9146c8e45c08918629c3ab0176388b6dfadbbd07fb462e1b4d8cc5f1dff93957dfdefde0f4e780fb9 WHIRLPOOL 1483439a2eb5f39610b3b67b93547b985fb3640664d4ae8331af0014f4f280140c326e232a28ce173c8d94a0d710929c9f4b422102e7d5a1d7ab223248b1d74b -MISC ChangeLog 3407 SHA256 4625c3cab68494c5b28ee284fa17c4d843e40aba147ca08d8b9ecd725459632c SHA512 bcf44fe91b4bb5c85bb43ff4857b2b3a8c9a0f4b4e18e2c0ed64a74395dfb0aedd52622e2e74ee15df43c1be22340c8ce52ee515c2f6c4ed134e6522144e630d WHIRLPOOL 3b7b81d5a0fdc2048e70e6b41fb00cc8a0b7b6cd523908bb48f2838d0279a6716c17dc1fc0c143a133e4132663fd52aba72c75feb53857f9f1809cb3a41afa8b -MISC ChangeLog-2015 802 SHA256 d1f719df37ef362e1caa8f4526cf9ad5f565a029b078a6ad24952cc6d1bae8a7 SHA512 fdc7dc97457ebe5b559a22497a2863feacbaf45e6eafde8b3843b6a2d6fbe1553748c55c0dd667ba1063991f2abf382ec4f92ce2df4fa73b01ca3eb89bebc79d WHIRLPOOL cc3a356736d1f59695f39aa29d778daab0a6aed7506f4469a66a7fb7e3a5641e7c42b310f6747951a1158ec153eeebe85d475950bf68e48c61b1da5a12b3a137 -MISC metadata.xml 261 SHA256 15c95fe0beb2b86b616b7ac1be6f1118bd598d907b441a94d87721c0d6f36855 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a WHIRLPOOL c00a986f98ceb4fa20ffdb0c411de9841218f8af6f7499a20a34258db4cd74cead97ef2ee18ac8cac7eae7db3c95084cbf8aa3a36f95a1ed7efbb0e088eb50c8 +EBUILD biogrep-1.0-r2.ebuild 866 BLAKE2B 76ffe1136628b52524a32e67c4e739f635609fb6411e1397b478b473aec3a75c4dac60def3dc40ce9c6989fca62736006f706be0a834ad4a228677a137499235 SHA512 224009fb74306670ecff19a0c9d271608aadb20fea285ff9146c8e45c08918629c3ab0176388b6dfadbbd07fb462e1b4d8cc5f1dff93957dfdefde0f4e780fb9 +MISC metadata.xml 261 BLAKE2B 3768c926bca545090342a947ba83e706a8954c51b99a5e7b3476ba5198cd326fe1c3b8efb51dfd6be1800682556b8ceea065e388981463ab32f3d687951872f3 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a diff --git a/sci-biology/biopandas/Manifest b/sci-biology/biopandas/Manifest index 2cddccb0241f..da7d36a7785a 100644 --- a/sci-biology/biopandas/Manifest +++ b/sci-biology/biopandas/Manifest @@ -1,6 +1,5 @@ DIST biopandas-0.1.4.tar.gz 5386 SHA256 0cc9e43e2ddcb0c33448660ee2ed2db02694e57daa1875d004525c40633a6d95 SHA512 efd7ec94bbcc069d8bf0d160480e7ef2c7c0f9febe21a684b46b6b14c69cebb0b3d9f2c315897be6b0ae888ed40731e2f5a16dee45b9c932b05c2c0209b62b84 WHIRLPOOL 1429e59bbb1b29ba116864e577d4be2f1b988e3a82b07c65525eae825b2a742b52da86ed49c837ba461814abf79f2e70d0ea43ee7d4f7906d6a38b39f0ad98f4 DIST biopandas-0.2.1.tar.gz 209379 SHA256 8952e1177d09b920b24d71e2a83ee76cbbd08055dd2672a366f03cc4fa9678c8 SHA512 0ea7aec84251d8d6ec4736c4968228133bd8622afb17d6916287168cb9f9757c5a97a4d5a52ac0e2f30027bf0edf9d76413db142f70d606f1359b8a4e06de7c8 WHIRLPOOL 9f3d088fde230cbc8c9efc25e06430ab8ea87a7050bcbb26bba1b3bb2ef2a300d7f9ebd77490652423a93b517f604156af6f11bde1702b7187c849b171f030f6 -EBUILD biopandas-0.1.4.ebuild 1067 SHA256 0bd60f84ad2424c1f94a4a51410f5a1856dc832a68734037648ac9e7415ad4c3 SHA512 9bd16c56d2a85d3f7e5db4c5eca0bbe73aec7ba975e0391cf4dba848f25cdc97a5ddab21ee1581fdfb15026fb9d5b9edbda5d65a33013c25f35741b4c9e19acf WHIRLPOOL f743a095f03f7537c2534d5fa080f7ec897615c20f24f25c7b00bddc0e70ca079ea46399d80a55255dbb4be6203fb74cb9b53c7bb6226f63c5a0177942d2d7bb -EBUILD biopandas-0.2.1.ebuild 1069 SHA256 45d58ed934f0ce74e1394a3d36192776d5c9b828caa82c7e791b1276aae1ade7 SHA512 c22c2233f8cc176f67f4a3786067549fdb59f589ece5e23d78254ec570ce220bdc0e7f39a3061a3d8b91c54f974993742450c644c444aa957b805d5ad4332c43 WHIRLPOOL 17c3169ad20636a3c62e051e65d758e9340369c510e6388ed87dace615ae6b7a383e089922ffd3f870f6dc438b98e17202e304b11916112ea0be5fa94c818446 -MISC ChangeLog 1574 SHA256 009f6b8a3e7c56e5559e39d7d026cbb6e9c1da701cb7c5e7f647a4fcb5ff4254 SHA512 4fb19e0d4e7385832f07f36fa2bc339d60917712a39ef389b7c63c9ede5a0ef9ce7f0de85e12a7af433108cba98d999abd643602a4e81c6e9b3ef7fb6003a403 WHIRLPOOL e46a971d8ee4eb73a8d012554bfb25ee17b5a0273e2a1cbf1e418083dd65c462220b59cbdaca544ad19648cd88f96f6b2e45ad16f66d2fb6bd06892011e29c9d -MISC metadata.xml 536 SHA256 9bdf3beeb62721b0d155c944ebbf18f7218f507aec62f7d506971f2e440e7ce0 SHA512 502803e30ecfac53516b56501a7bffeb49c3c0bc44ce5b3dd87aac5c745de614c235523ba3be374fcbede1a9a7bcf11c328abb27d82e087b275303f38b80b166 WHIRLPOOL fc29057d37ae21422dbcd6d9bc03af90940630ba872d5c68f747e1d4f235d9aaccc0acb55e1495cffd640a5ff1e5c576506e727e382ee0b69e7aabe914ea256f +EBUILD biopandas-0.1.4.ebuild 1067 BLAKE2B 7b1e9176c92d0e6a672f8abb874fe1be49e9808e27cef115a481366b40f2e5e3df2394cb62a75921ff0f65f13f68087bc8e4bfe6789bf465ba3851662dc91bcb SHA512 9bd16c56d2a85d3f7e5db4c5eca0bbe73aec7ba975e0391cf4dba848f25cdc97a5ddab21ee1581fdfb15026fb9d5b9edbda5d65a33013c25f35741b4c9e19acf +EBUILD biopandas-0.2.1.ebuild 1069 BLAKE2B 7d521f9d820799df9794914e537cb46f236de8fd04c4df057a16d79ed4d95ded7290df56bccf601ef3df726e01eedcbd76eae791c281fb11e8755d97e19d03c7 SHA512 c22c2233f8cc176f67f4a3786067549fdb59f589ece5e23d78254ec570ce220bdc0e7f39a3061a3d8b91c54f974993742450c644c444aa957b805d5ad4332c43 +MISC metadata.xml 536 BLAKE2B e3cb776d0332fff486a7e1ea1353c54694ff687d4685bbb51728db0ed2025bb3d09d39cf7c9ea9f11546cbf9c4727661348e2f5fdfc13ffac2329ef6dfbe7450 SHA512 502803e30ecfac53516b56501a7bffeb49c3c0bc44ce5b3dd87aac5c745de614c235523ba3be374fcbede1a9a7bcf11c328abb27d82e087b275303f38b80b166 diff --git a/sci-biology/bioperl-db/Manifest b/sci-biology/bioperl-db/Manifest index 6cb8843176a4..4ce9d8cf50ed 100644 --- a/sci-biology/bioperl-db/Manifest +++ b/sci-biology/bioperl-db/Manifest @@ -1,8 +1,6 @@ -AUX bioperl-db-1.6.9-db.patch 1567 SHA256 8ae757084e0f2b1933da271921ede70bed2a0408c179108b62520b2433a4f493 SHA512 a0a2ca951645b70b2e4eb3390598b2a42d6631109500238d6fc482d97a616ec1881738e5dc9af118d37fdf50657916ff275124f409510cf15515dfbc829766c0 WHIRLPOOL 0e5eaeed9248ca9581e4ed20f8ad616e12947e75e97f6ee4d0ded580d74c1a606a78b8352337c7accd42e3f5709e602c4694f97e44a9ef106fce57343bdd8cea +AUX bioperl-db-1.6.9-db.patch 1567 BLAKE2B 40a1ba874e745630d886d0531ab90385bb2207073bebc823c52f595fa4752b0b9bf310adf7148ba4c7c5c1ec19ddec226d28a34311c932a0f37da6af1c0dd422 SHA512 a0a2ca951645b70b2e4eb3390598b2a42d6631109500238d6fc482d97a616ec1881738e5dc9af118d37fdf50657916ff275124f409510cf15515dfbc829766c0 DIST BioPerl-DB-1.006900.tar.gz 492799 SHA256 50df2447b7f3e26aebcf02ed7344d3ef562c3f5393c1584a8ae086185c8c9139 SHA512 e06b8b9aa4188a83128f910d7b4a031f69d36f75e4f2d7210357366379024ef39b58eca97112b5b419f141c82b7518086273cc97c9637382ee5e0ddb9ce28746 WHIRLPOOL b484ce9f464a7189e5b2fffd6facdd426e8b9009ffca5e1661986490bc45dc0269faec5e9eeebdb23ec5c706f62a670fbb6bfc5a60b11c268c7e6f34bf1f03f2 -EBUILD bioperl-db-1.6.9-r1.ebuild 2024 SHA256 58f6b9583d0f68d1cce6cdf6093719aa384f96be474b3694bc83e5e89d28a9f3 SHA512 91814c0b622e2390ac3db18bed47d4ea5f02f7fe493a668bab9a5de4ec3735c64385d4b11ca21d34a05f476e30b7fce7100b3fab77d51607b78804f9b23451e0 WHIRLPOOL d95ba2f87c25536d5ebdcfe89fa7eeb127c07fd2429b01647e3fa5f54d064120fc27f4bc089e1237035baf70245c07ffa5e2cbf318cf5cc998947ec3c775352e -EBUILD bioperl-db-1.6.9.ebuild 914 SHA256 3a4b5008b5fba0376a25b252fbe860c585922a9c6161bc1038f7262d2746050b SHA512 0d555ef35d5a6e9fda3a48ffc3c7437ad52110c8c9f2a223f103c15c6a866c6c776b7c8d0b1c5c1848336263c64a6e79f80ba476d6205e8f3a90788236ff13e8 WHIRLPOOL 01cb04c656c944eb23b3d3c741e887663b6605872b612c134a6a89129460eb3241d5f731bf4d84fb06acc5f6df6be64dcfba54156854ba1e8208fbdac2ac65c4 -EBUILD bioperl-db-9999-r1.ebuild 811 SHA256 81ad8e871f3da8ce9e8135baaf69d5d07b13fedc8bd5a2b2912a3367580b24fa SHA512 23c57f3cf36d0be73470941b408ef59e84457b9db37cb764ba9553bb38404c48498665982a827c981328b6e37b8e7429170644a51ef3d8e9bbd2fe468f8ca7d8 WHIRLPOOL b40c5193ff19433435dbd7fca3ac0018c6e0d91f05f46b7f8dacb0bfac70ca34407f148a9ade41650562c3e7d0a78793c645adfc9d3f0242dec09ceb610af303 -MISC ChangeLog 2501 SHA256 eb07657ab421bb85f4f77009b0e5918ad4752a507e79bcfb166d7cbe1dc6e49a SHA512 d71c1f72dc281a5c1bfdc9f706cabd8e12816094a2481d79f48d37b0444b42801becefc7a94a7d0867498f618b80b873ad77256e4469cb55353ea46e281eb3e4 WHIRLPOOL b58d0a4f108826b26b2953005629e74fc1da6640877104988a842b04fa0ca3bb6dc36b6d73f3ac42b8c23da5a6e1b4844c06160e77c812029b37ae469497140e -MISC ChangeLog-2015 2319 SHA256 cc5e31c7b46436054b18d1d2b6d020c68080dc59e9c807857e81fbfbdf72a1ef SHA512 dc3f7e0d92bd8984a83aed5a5fe739f24cf2e96f53087af0f6d36c6a441102733f109c22da0e960c8b2815a133b99a2129c448077e36f7a5f9a368386f302aa5 WHIRLPOOL 62459d94d25fcbe5ccfdc3ffb4316600acd1389cb2ebaebc927f2680e8aca56d955ff2cb02183cb754efc048e6fd751108fed81aba97683573f383ce0f1b69d1 -MISC metadata.xml 344 SHA256 1b450924ccc444666839a3700e9ac18a38f8f99db0cbeedd5f4e202466edd564 SHA512 a477289255247669c332915665c4d414ba2857b5716a60e8aec1bf8d1c38009c9fcfb7421a02bdbd9ad566be32bf2b21f57fd21c745aa62185d5dcd13d78bf70 WHIRLPOOL e29a2e18f1d081a4624730b992858c71d1124a7c320b76cdbb2ec422f3071c67c6a0cc0d14aa0c731fec643a5f44270f67441913b8b26f454677bc9aa5a9e2f4 +EBUILD bioperl-db-1.6.9-r1.ebuild 2024 BLAKE2B ca465f670dae58a8deea0c1ef3ce9deb9a4fe5515ffae41850db8e20c41b57960a7fa0d7ddc0aace635fbf56f469c45604e9386639458590548e8fe3aa14b3b5 SHA512 91814c0b622e2390ac3db18bed47d4ea5f02f7fe493a668bab9a5de4ec3735c64385d4b11ca21d34a05f476e30b7fce7100b3fab77d51607b78804f9b23451e0 +EBUILD bioperl-db-1.6.9.ebuild 914 BLAKE2B 8c295e576c35b00754492c715255fd1816bde6d8477e068f2796b96dfa251d24f24f8f260362d89a8cda4881fd4fb1aba204315105422a6c024f0b6a9f083917 SHA512 0d555ef35d5a6e9fda3a48ffc3c7437ad52110c8c9f2a223f103c15c6a866c6c776b7c8d0b1c5c1848336263c64a6e79f80ba476d6205e8f3a90788236ff13e8 +EBUILD bioperl-db-9999-r1.ebuild 811 BLAKE2B 43a9cab7283b634b0f1a1aca1d2c37734169b0a97e2234ba56140cee04bbed7e60f8012093420f07e7c3f9f298464c80dd5f0d9507d4509ba885867be9f5edd5 SHA512 23c57f3cf36d0be73470941b408ef59e84457b9db37cb764ba9553bb38404c48498665982a827c981328b6e37b8e7429170644a51ef3d8e9bbd2fe468f8ca7d8 +MISC metadata.xml 344 BLAKE2B 9a757119f1a9939d57a4f9517b8dd5d68732419d7365fda69af107719aa0dba15c79ac16c746cfe28ce36beb060aaa867bffb078175da25961f9f8b233634d34 SHA512 a477289255247669c332915665c4d414ba2857b5716a60e8aec1bf8d1c38009c9fcfb7421a02bdbd9ad566be32bf2b21f57fd21c745aa62185d5dcd13d78bf70 diff --git a/sci-biology/bioperl-network/Manifest b/sci-biology/bioperl-network/Manifest index f67e3356a393..674946d8ad79 100644 --- a/sci-biology/bioperl-network/Manifest +++ b/sci-biology/bioperl-network/Manifest @@ -1,6 +1,4 @@ DIST BioPerl-Network-1.006900.tar.gz 2198089 SHA256 5b31ab7d048ee8e7bd6ba933f96b904d7ee06b46ab29c00276eca3513a77c32a SHA512 d0a95af17cb024cbc615c784f1dbcddd7bfc5b54524163ab127f1077ded18df222fe067c085f3dd17dd416d6417b8f726526be164e1e33144991393f6b6d5842 WHIRLPOOL 65ff9e2509c0136232b7cff1aa5e8ad55f26241f51e70e6d34f9383c0af4bfdb0c5358b1a69075d480e9e1fdfa19342058fbe33ea4d4a633220ef3a80d6ed984 -EBUILD bioperl-network-1.6.9.ebuild 610 SHA256 dc93700854168aa40031bfe94e80e6d975f47f6e5fac37e0a7ce89b20c46adb3 SHA512 75a872e2925c8d7662caad9e68d490fb1be835ef26038aaf7520765c15ae87b64369d7123715e8182f3ee3a0017a441a45a869e743e6773162831e75b1ebe4c4 WHIRLPOOL 554bcf9bf5b258231573adf5d8afc8ad6b0d748bea00074b7a285ccedc07cd3c5c851f3b1219fe65ab0ddb7231e7b733ead61fd7fd50fd812f0751462504e48c -EBUILD bioperl-network-9999-r1.ebuild 642 SHA256 f379eff4781d05243b7ab092f3ac599d75baa500cb9d056f1f8edd74d3c7f900 SHA512 455ccb0f4b3b426d6930f2efed4771a2538afafe47141defec5532500ea75a2954bf4e71f39ec7a3229821e74dcf1aecdce370c5e05479e4317ebc2553936ab4 WHIRLPOOL 7eb7e90fe9db66cbe4c8c5df30329ab3d0fe97c153b1f6402b9f0a157ac378d8032b69a00cce254b16aeefa0b19f4cabf19cbd75307d4fe326fb161cb3551164 -MISC ChangeLog 2528 SHA256 4589847b8ae0a16d85f9d7e1f4384e5abb1d217a36bb121e3e92d71930850d4b SHA512 cb78e0b6d9922a7c3d0ff081c67ef7ffa165b86a4f2aa2a632d25b14e6ccd6833134ce186b774c49651e73880b6bb6599bff9b5cda377b7e8d1838709785f944 WHIRLPOOL 12dd76ba1d96355ed4907c0298a3e423e820f4dd7ce5d8c05afdafb5c96bf7b350cfeb4911de65dd25f57195ac6215c5ca8075183695a85ca949ed25a69655e6 -MISC ChangeLog-2015 2323 SHA256 c902f57dbd1e62a8d0138e1c881dbe807a073d246085ce096a71093eaf5f1e2d SHA512 9fe2d1a42326a333c406220c1a4360394ac801b06c1dc823b62bd73526420cc1ecad9ec6274cbbdc49048aac46a3da2cc968e6810b519d8a7965fbd109c00e43 WHIRLPOOL 0d730ec28006f081c90576eae34524ea24bfa47e051ad060062ec41c92df1d5941849d0a3e0a6fc2f354f2bae46b52e0e00f3e0dbbc04a68b79ac9104f17c52c -MISC metadata.xml 349 SHA256 35823cecbbe6d4817306fbda6be70259eb44b35dc61ad81cb991cd7b5b4a9aa5 SHA512 dc3b8e26619cb4ff0dffeb79aa91f402a35cb2f673ecfd0bdac9d3667be82c248dcdd246185a006e8b91c9b66157689eaaf8ee464e00c54227c2c78cd9827b63 WHIRLPOOL dad0685cce0f620edd00c400187833f13b2e89e889074c891cef41dbb09ea802f91bc6ea77662cf5730f04eeaff115ca2f6d10e4d51d01588c49999f8ffdeb09 +EBUILD bioperl-network-1.6.9.ebuild 610 BLAKE2B a54745ebcc3c5b52a302d2086bf2d25f384aeaf074280320792ffbbc7b257559d3cbf20d17c6ad04035cb49eeddb22143ee9346cf2ad7bf770c2c9bfdeb25a81 SHA512 75a872e2925c8d7662caad9e68d490fb1be835ef26038aaf7520765c15ae87b64369d7123715e8182f3ee3a0017a441a45a869e743e6773162831e75b1ebe4c4 +EBUILD bioperl-network-9999-r1.ebuild 642 BLAKE2B 8a4120f8380b5fab4bc60cb20b97acae366acf5392e8716137e1c6fe90c9ad225558fa35fcfcd4c48cfbd94dc47c02ecc9ba27f6b587d6d7ebc207fe07720f48 SHA512 455ccb0f4b3b426d6930f2efed4771a2538afafe47141defec5532500ea75a2954bf4e71f39ec7a3229821e74dcf1aecdce370c5e05479e4317ebc2553936ab4 +MISC metadata.xml 349 BLAKE2B 18f5a67acf0859a50cca897d39e3e1a200eba44198d5c2bb1176d29579dd97dfcaf8b2cb8ffa4baf9c2adc7072f24b0344701a986b7a4f5a8491cf85b4086579 SHA512 dc3b8e26619cb4ff0dffeb79aa91f402a35cb2f673ecfd0bdac9d3667be82c248dcdd246185a006e8b91c9b66157689eaaf8ee464e00c54227c2c78cd9827b63 diff --git a/sci-biology/bioperl-run/Manifest b/sci-biology/bioperl-run/Manifest index af2014cefcc3..b6cdb0ec5d8c 100644 --- a/sci-biology/bioperl-run/Manifest +++ b/sci-biology/bioperl-run/Manifest @@ -1,6 +1,4 @@ DIST BioPerl-Run-1.006900.tar.gz 14546677 SHA256 6eddca8aae38a139caaa0b28505e2ff3e919e8ed39b7539a662b0145f1f08d96 SHA512 47f2b853885c604291ac0aba3269b897de59cf7da6f7d54a50ff950cca836338091309df550f32695159c620be23391306d0421d2bbc22eebbb61a9e280ad83c WHIRLPOOL a671180b3680d94683e771ba661e0f86430814200efcd8df1552dbc3c30228d90ea8be1b47cc36603cbfc6eadacb276414ae6d79e30ec80495fd836eb1732cca -EBUILD bioperl-run-1.6.9.ebuild 931 SHA256 216193a88c247f5a94a8a1fbddf5c84142394e05db0c696528f3704de1ed15b8 SHA512 b512b3fc62208ab6ef1c6f160d43c5e9b8a3f03131398144ec4e4e1ddb1973f45b121220e71724a0c621ff58ea33b5f639cd23dedd62e033f3e78118dde2e94e WHIRLPOOL 59e5583d20d1305d680e7bf99beac19155bb9ea4cd87f5227c616a95f91feb36062a9994073d961e10befdde1157238f8c4689a1a3b25a308337d76936119538 -EBUILD bioperl-run-9999-r1.ebuild 928 SHA256 3dddc8db1c7d8a40ba5de894447187f28bf678fec04362a6a2506b900a688b80 SHA512 42449a6ab99ccd3779899536eb525b6bf029fe477d65e5d8c66958b5803749180c06d068fdc4c06c3de0bbb9987751f6b5886ee446fdec92db5683f8e41a8e4d WHIRLPOOL 6b9b5e13a2af762a7a8c29f02c2ec6c81caeeda4b72265153124d37b9e189121175c0f8d1f4ac459c370a946ff5e8ef63fb7432433617c16c9f78652bdb161f5 -MISC ChangeLog 2714 SHA256 a8deb18bf7045efe57adde6efaa255ea359d1bbe7d7a3b61390723673706d4d8 SHA512 3180ce2c1971714fac7483346234d68c0b54833cb51267abea8072a0ce9afb93758ae2a6cfc8c9e8ba6323b2c0a1f78825ca43ba199847053317bc30d1b585b0 WHIRLPOOL 416604ad2e83fd017fd897bd0a93ae0b08f2893fe6db04bcef34d3e6647c47eeb68bdff7947586e707a49a2fff5e0e20a416fbb666c1df9b96d1aa7c2b0dfc77 -MISC ChangeLog-2015 4922 SHA256 894c5d73973fd308ef87e47c9ec9200d4fa6e69cbaa48add3ec1bbc0da5ac61e SHA512 3810afc32235725f917639aee6a21ad83521d32787efa453d54098c89fac36d04f7573bb8c93d3fd7f02db897382417e17a14cfe3ffa865b6d88d41c7a99dd03 WHIRLPOOL 143823eb2873eaa24a283bfda5a347ada22f018e1a87308a8fc3e502d1b4a929b7d1d0a61d7f9fb705850fec35b1ab6f108c23a2dbfe1f23b936473eef3c11d2 -MISC metadata.xml 345 SHA256 925b0030884af3b8c4a9cb3a539154ca27318dc788b9e1f3d51f0b1511ac9427 SHA512 23370e5fb887d48f37f6ef1d3fa45092fb3b45e111f82488153ce5235bdd7671bed559093927ad92e3c7876f390e385d032fbf9e76a55cb00a0da7fa80bea2ad WHIRLPOOL 9c0136ff7780364d07d2aa08f249cdb07f3723e65dbc957251dbeaaa3c5cc178fbb0712ccbb31e021de12c92b051766a86429781fa7d3c55ea0ecbb3b7c8d46d +EBUILD bioperl-run-1.6.9.ebuild 931 BLAKE2B e956a7d12719560e9b4cc33800f8a53d8c590d739ecf694f8fd334ced2b01a6fc81fcbcaad61cf5c69f9ede5a02afd2dcfe1051cc99f7fbf93466bf427bf00a0 SHA512 b512b3fc62208ab6ef1c6f160d43c5e9b8a3f03131398144ec4e4e1ddb1973f45b121220e71724a0c621ff58ea33b5f639cd23dedd62e033f3e78118dde2e94e +EBUILD bioperl-run-9999-r1.ebuild 928 BLAKE2B 46d56d6b0c025c8db012acae41a355dbfc6d94810811b9950fac0ef151a6f4bfb562bba257627f73c877cc6c4530f0818275aedb6e74419d128fef9c1beba6f1 SHA512 42449a6ab99ccd3779899536eb525b6bf029fe477d65e5d8c66958b5803749180c06d068fdc4c06c3de0bbb9987751f6b5886ee446fdec92db5683f8e41a8e4d +MISC metadata.xml 345 BLAKE2B 91a15324464d913875ad2c449052e2f26d7c48cac90e9e36a66d91ff43d02e424841b8758121ec06625402dbadbfd4455e7e39a17009832fc4b2655d381379ae SHA512 23370e5fb887d48f37f6ef1d3fa45092fb3b45e111f82488153ce5235bdd7671bed559093927ad92e3c7876f390e385d032fbf9e76a55cb00a0da7fa80bea2ad diff --git a/sci-biology/bioperl/Manifest b/sci-biology/bioperl/Manifest index d4fd5b9c45c0..2582ead6f045 100644 --- a/sci-biology/bioperl/Manifest +++ b/sci-biology/bioperl/Manifest @@ -1,6 +1,4 @@ DIST BioPerl-1.6.901.tar.gz 12284856 SHA256 8c74bde900222ce3926491ee103997c841c8755148c8dcaf0be1abfd61c5ac01 SHA512 227387437c940da1435ed83fad6ec2168ca12a729c90dc557e84750c6474213874c23a8f23e50db4027909469627baee581faa11be6208c8e0a5453a01c7eca4 WHIRLPOOL feb1f93a617e0135ab84b0eeb36ac986e817ce76ada0f40518090f6a480fbb1047339b33fcd11ccff444f89c4a06c41b5abaab66b662a50f17ae34f9b22d66fd -EBUILD bioperl-1.6.9.ebuild 1544 SHA256 48af54169e933b299b5cbccb8d024c622ce54b16b16c2b81de60eb8a50e30dbf SHA512 2e6167abb3ab729eef114ef9e38955e5d2b5353efaf86f5af16aa00348a661adc5b2297f22c2a77126c7f4f3f08f3db9c0af4210ddb3328653f11b1f5a782744 WHIRLPOOL c44238e73089079e645711b59e2ca75071ed0c92b193fe5990ba2a72d1b06b8c80d85ed73921883a92be04b61144b1f600796e6d210b7477b6bc7af74bc609ba -EBUILD bioperl-9999-r1.ebuild 1793 SHA256 4572481f8dcf47e793219278f5c745861d6142c469e2bc337a703b636674f53b SHA512 25459e6fdeacb6bded0c81a4bbd3a6d85f7cbae973b6f9b8a2ee1a44ab56b5a81556b1c6176e389e57efa660fdb35a6b61c71aca65f90e221bc04a0dda395e5c WHIRLPOOL 2a78b548458705effdc5cdedef1615933643415548ab47d75c7735fb212307378107709a4d47748993ea534b7ec85619bf1f6df4d522a280a206405951297530 -MISC ChangeLog 3082 SHA256 922b31d7106a75064fc95c36bee21e8674e13efa8922d9d48a5c992c822517bf SHA512 b3af13290548dbd7d06a468b1c7cda939861bae04813d69e88f8a7e48ef191757b6315375c25d4e88932cf4a890fd6851f23c97e537f35913262be26fa40ca25 WHIRLPOOL 9f0b7b6dc145e0001cfc628e353f3e7a1f825b6da378bc8a0dc725889cefdd83e33a8095b76c17f03e7475e4d54047130a815eeb20baae530556c2870186980a -MISC ChangeLog-2015 10092 SHA256 c62eae3a76746911bc6ba9682db44cae7205fab5fbde5e04f6ff55c22b5d55c6 SHA512 dc29fc462dc9b6c9d0dfe57c7e594b7d12da79aa12382e0ac738a48c470e0051ecac32b15c1af79d68183798050a2d09ebed07e8bbd78305ffa5cee4a3fba657 WHIRLPOOL 657e7f90335f20d92a4eea80d606464e279a282b85603c12b289e446204d00f6e02aa6b761fac0802a3f95ebd4f5ea38adb7e1a9ec9b1c53e1b16e9a4adb74af -MISC metadata.xml 541 SHA256 83910a66da15199aa7cc29e9fca93cea8bfd8edb96f9efdf549dcf6c8ea3fa2e SHA512 0693aba25e02d3ad67f82c2c77f9987ae06cb6545bb58df2c57f076a22d5c2f6d15c7fdc11b0766748680d53c709c7682b53f866a4f45d7d8a875d1311277e5c WHIRLPOOL b6359f4f497274340afabe6c6e83290c4be0c58b48598216061cc5f81c8a8ba263e2bc408fd2d00a4450bf3750091ad5d01e6321c7843c3cb4d73a993df101de +EBUILD bioperl-1.6.9.ebuild 1544 BLAKE2B 83878553b6badd2c209da398bfd83e1733b94e85f44af140ffe3acc6a2915f41643483751845a32c838889b3468c66bd20bc899248953848ce4d6a47d0bb083d SHA512 2e6167abb3ab729eef114ef9e38955e5d2b5353efaf86f5af16aa00348a661adc5b2297f22c2a77126c7f4f3f08f3db9c0af4210ddb3328653f11b1f5a782744 +EBUILD bioperl-9999-r1.ebuild 1793 BLAKE2B 4b6d953bbbe3b3f233ad3c26fd446a145026d372f932b04273b6bc8fca823cb074ce4353ef07c15c61fe49dade606926275fc8448571acabd7a47462d857cc7c SHA512 25459e6fdeacb6bded0c81a4bbd3a6d85f7cbae973b6f9b8a2ee1a44ab56b5a81556b1c6176e389e57efa660fdb35a6b61c71aca65f90e221bc04a0dda395e5c +MISC metadata.xml 541 BLAKE2B c01f01fae7a659a708d0d3d6520e98f5bb8fd0e848fd82ae11ba7b6806f18c3ce271d76f94123f6a47c33ca88ea665689b1ec5664c114e28ec18443a87cb31de SHA512 0693aba25e02d3ad67f82c2c77f9987ae06cb6545bb58df2c57f076a22d5c2f6d15c7fdc11b0766748680d53c709c7682b53f866a4f45d7d8a875d1311277e5c diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest index 9219f3e4b869..c795e822b98f 100644 --- a/sci-biology/biopython/Manifest +++ b/sci-biology/biopython/Manifest @@ -1,5 +1,3 @@ DIST biopython-1.68.tar.gz 14445813 SHA256 d1dc09d1ddc8e90833f507cf09f80fa9ee1537d319058d1c44fe9c09be3d0c1f SHA512 0ca994475654bb68ff326c8e86cbd4547cd87b42e1633dda039ad668e1298884b22e169f6b25ab514e929861334a93b7db6d057a3486cea9997ca2de95c61a69 WHIRLPOOL 9348354d0063efe0f9051f46e3be60540c5df21a43c094d74e64d37279736921d890cd639c904336eb21b2996e9948b8a050017b77569d2333ac80aa5b8bf156 -EBUILD biopython-1.68.ebuild 1645 SHA256 17014ab913a356416b73ae696b7862e0536c47a10b017dd5fe22e049f5dff4a1 SHA512 23418100fa56983329f389e46f1124e3e03eca7614fac6c9465a53be765742e50029060f3c9efbea8ab2eeba02eb1c617e705c26fee65a47d030d0e436b97f03 WHIRLPOOL b308da34762e6ef1845a28f7b84fb629482ecfd84451718c6abeaf3bce71ff2c8b0fdde6142e1184b5d2528b5399358203ff161bc21cfaf0f39d8b874000fea2 -MISC ChangeLog 3520 SHA256 148533b2d48445a82765f8d34118ff94b4967fc09132ea88d9baadc83273f79b SHA512 b032a3a05e2804ebda1b7db5742b2a2ef4021cfb240d74367a0aebd6edb810ae544c5a751459edf190928f6843e13c5833b47b0727761bcc882f67baf225d06f WHIRLPOOL 28d3df06e0eff7838e0d958e7f65e6d99d9bc38c9f96969172815f92937e2cf25cb8ba152a432c19a70839df0f200b22154b8f544cd4c7a972a4d5ecb629b91e -MISC ChangeLog-2015 13216 SHA256 cc9c6b624ea4635f4346a34cf7ba4771364f161175177268e24a646ada9db31d SHA512 197cfe74bd1b98c0580ce07bf30ea23b21a7549a6c365588838468ccd3cebc4f9952370e44e6a9f66f4eac34c0239fe46de60732640c664cd49991c40487f198 WHIRLPOOL b1fdab07aad1063f3bdcc943519161b551db150393ce425f1a998b59c7fc24142ccaa997835d9ee4eb7119b6758b2ebd138e2f5a7c454177c34a184814564b21 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD biopython-1.68.ebuild 1645 BLAKE2B 1faec1b5734c7364ee7290c412f363da050bf2dde7406e3ab311427863608f5678bb4e708a54b76f7457b3fe21d46c71c1912be0bc053a286333e1acc95fd08f SHA512 23418100fa56983329f389e46f1124e3e03eca7614fac6c9465a53be765742e50029060f3c9efbea8ab2eeba02eb1c617e705c26fee65a47d030d0e436b97f03 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/bioruby/Manifest b/sci-biology/bioruby/Manifest index 0404ed685d63..ea37ac9fa348 100644 --- a/sci-biology/bioruby/Manifest +++ b/sci-biology/bioruby/Manifest @@ -1,8 +1,6 @@ -AUX bioruby-1.4.3.0001-fix-tests.patch 1082 SHA256 a2347c4e0c731ab24d3054002837de16821b26956e0ffeac97c62b6591c7ca5a SHA512 0a46f8d049521d90993274b52d7bece39464999a4286ac2052a7c8cfb97fe31af7eeadfc8d42c2cbd71f80aca6ac6a778eeb1de7341368ef2ee726444b74752e WHIRLPOOL 05aad8aa4e2a60c5215b6a26ccd942b8fa687a5bce99a0918db6f3a859be961ba131c5a74c3badfede98019a70c793c0153de873aff1d984872383fc4fe3ddc7 +AUX bioruby-1.4.3.0001-fix-tests.patch 1082 BLAKE2B cd12d78630371cc453de5abb2d352b329acc98076dbafad393d56dce5c2eaa25e6bb435206bc8d09671fd086af884d2f105fa1b4ffab55cffbc2e2eb6ceba265 SHA512 0a46f8d049521d90993274b52d7bece39464999a4286ac2052a7c8cfb97fe31af7eeadfc8d42c2cbd71f80aca6ac6a778eeb1de7341368ef2ee726444b74752e DIST bio-1.5.1.gem 1445376 SHA256 896c19af7e724e038baceae20c00688872b70c69ef966ef3adc42696d001b441 SHA512 822ac6c3d85847193fc1992087abc868e4d1a7cfca82da6ab1830af2927a2a582c3993bc681e129a6aac224ed1cb0b33056d8cc02d3e36d68c9d6a4153c321ca WHIRLPOOL fc8ca3cc508e5d1c95b986cb64eaf28641833498110530a625836117d4a55e9bc01e91da9cd9d71ec40de209e4adb683fff0337260d7b0d8fe30b0659bed94c6 DIST bioruby-1.4.3.0001.tar.gz 1500656 SHA256 20d6548e1c5977464afd74019693dde9e45a030d48d974db08a7b85c4214fb35 SHA512 77ad96388e1e8b1dccab582a3bc309b99b36cac1803f79b42707fc4dbf439de31ed491ce5e1c2e59f695643756ae0df2e275bbcd9ad6827f251b52edd677d821 WHIRLPOOL ccb952d4cd3b8700acbf356a0965842b068aa2fb861dfab58e7442e5570ab79604a8be1fb86a9d80d6bc9a8f9dc886daf98cb84fe7298b4f334e0e6be198f9e7 -EBUILD bioruby-1.4.3.0001-r1.ebuild 720 SHA256 2defe33e7f52e6890931b9ef9643b763a9ad6f94d9cfd6f7610419a4fea060e7 SHA512 9a929ffe9e804ce835d0399fad4afa9dd8b0d9d2acfd234d2944168826e05d77e538c1163ad5add74b62433a10319b1b492d91ddd8786ba52dabbf7b27ea2b8f WHIRLPOOL ecfc151b2cf910cea88fea75b3574c02fe7def8b90c8244693a1a71adda0106e3e3d8ce42b0ea6f2d5432806a6ad87356e4d679b62f630385daf7b9e466d7db2 -EBUILD bioruby-1.5.1.ebuild 440 SHA256 273aff24621c87dadbf37ac00f31432f279487cdc9ab80f338909744065d6c0d SHA512 b6812050b69f792b268d9e06e0d72f19d4b7a01d4fcb8fd8aa335ac111359f4585de8f7a55793192c94a7291f2caf0e038668aa5a0a5171b762a3fc04f6d1e2d WHIRLPOOL 7f4e5e605429b7068e60ab49858056cbcce2fb63c816ecd60fb7bb5b0a4339d1abc30f2080910ae477bb80537ab269ebf428e40fa319207b7beb137fc6a3f6f4 -MISC ChangeLog 2846 SHA256 1d408014c718f1a4b2a324cd81468717dfbf8a87b69ef66ae6c99ddc7ec080e3 SHA512 4b7ca4cb97ca78cb79560e84d45252611c724f31b575c4e7fa9baea0d4c6839e920e35caee8c0daba2554bab58d8e5a6de315e3413e0026a457374a09d3e553e WHIRLPOOL ab646e4c28ea30be0d4ea0cbe69958055c5c0ab069541df6b50d7ecc10f7f9b5f04455d7271b269896ae68c9d4c93f0a0a3a8c6eeacfc23097d0019c01680793 -MISC ChangeLog-2015 3291 SHA256 a26c4357e8b5e77a8320cf18d5ddc8edd842e1343834dc205b1f9d6d3756f5f3 SHA512 189d5703b69ad3c25521c1a28f2aa75b373581f0202d3021d0d553d76b7437b2c81b357e244a3cb2d72072e03ae91f986a207cfd2b7b794d909af5b5e1615a12 WHIRLPOOL ed208d74756d193040c859611bb07ca238bf3e89d4c62e00df366523c96cf266871b516eceb689e383c96c9391c4bb5c673767241e67ff5c6f1462309a3547a4 -MISC metadata.xml 261 SHA256 15c95fe0beb2b86b616b7ac1be6f1118bd598d907b441a94d87721c0d6f36855 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a WHIRLPOOL c00a986f98ceb4fa20ffdb0c411de9841218f8af6f7499a20a34258db4cd74cead97ef2ee18ac8cac7eae7db3c95084cbf8aa3a36f95a1ed7efbb0e088eb50c8 +EBUILD bioruby-1.4.3.0001-r1.ebuild 720 BLAKE2B bf991823574efe9750c99173270a034a25c07bb1d10fc682796a97e923fa88113c2bced77643df8b2758dec7b194e6a38b27e356a75771e9a0d790b12554fc6c SHA512 9a929ffe9e804ce835d0399fad4afa9dd8b0d9d2acfd234d2944168826e05d77e538c1163ad5add74b62433a10319b1b492d91ddd8786ba52dabbf7b27ea2b8f +EBUILD bioruby-1.5.1.ebuild 440 BLAKE2B c30688066c4d760ebfd6df314dda0fc85367231e01c320dfadde9664b915f5bc36416c28b7afef4ea7cb729de708045a02b1d71927d6beec0ec2e68c2c03ed11 SHA512 b6812050b69f792b268d9e06e0d72f19d4b7a01d4fcb8fd8aa335ac111359f4585de8f7a55793192c94a7291f2caf0e038668aa5a0a5171b762a3fc04f6d1e2d +MISC metadata.xml 261 BLAKE2B 3768c926bca545090342a947ba83e706a8954c51b99a5e7b3476ba5198cd326fe1c3b8efb51dfd6be1800682556b8ceea065e388981463ab32f3d687951872f3 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a diff --git a/sci-biology/biosql/Manifest b/sci-biology/biosql/Manifest index adcb409dbba8..9e2682fe1f82 100644 --- a/sci-biology/biosql/Manifest +++ b/sci-biology/biosql/Manifest @@ -1,5 +1,3 @@ DIST biosql-1.0.1.tar.bz2 253516 SHA256 3604ceaf6f3e42a11613b49577b7c68f04d9e094cca4e5d932359c815fc9ad01 SHA512 2e1fef6ab9b4386f146910937700f9108f8ef266161b7adfbbc52c0011eebc84716637c897a01a399ff39b066ff0a5905ba3fa27e7b41f53a87baf58d5b32695 WHIRLPOOL 3f29a647dc991dd59840aa681df8d5664a15ca5b83a72bb23926517dd8e7734c2db8b07e1f426c73a99fa72ef13e3fd3255c67eeb09ae11afc6804bfaa8a5d54 -EBUILD biosql-1.0.1-r1.ebuild 989 SHA256 ca3ac50d2fec3c37a05e724c4ae7bc836227e01d7ece5b52dac1f634b9de9932 SHA512 874448ac12a4e0331ec7b7b5ce8843928f92a6b42987975380715d39f7d0fc5c0cf688c4a596963ae5b008b55367fab3db317a8d17a19230d113e4d8e142c37f WHIRLPOOL d92e69a119ed8a1f1e17d79e354a7a2a6558a6192950b589acc34e0d5f06b9a51231d41a4aab3f940b633668a4422a1b8dad22b38b38f05551e43df9db99b3ec -MISC ChangeLog 2427 SHA256 9e245904d449f003463811df37ad7a13dcb52c8a6f267c3d206a8f4903aa4525 SHA512 282237f1fe33f8d73270970e4d20ae5fbbb731d78a0195a7d439e1c72937da38ab242553af7a0056bebe6bad6f6803a0c9ff6f87db7220ffd2575b3ca112c00e WHIRLPOOL cbb0d8828adfd028ab16aa5410bc07b4c3e2ce6971cce89942d897cd4f6265b70c2840d79400dd43ef05f99fe447e98c0bc861f0685b5e17ea7cd955e55f34c9 -MISC ChangeLog-2015 820 SHA256 d6640bdb2894832c6ac2711f92f9b0692d358da83480f27983417fee81383d38 SHA512 2692437c36287fb01616e34c7e75b91cc62a635b9a5dca3fc5de9096a1a5fc14f5b251a7e5d7c14d4638c32b7b65417431b0cb465c00a7c147f181e04a83d473 WHIRLPOOL 8802950e9882d07bb853e2353b00c416a0f531800d54a086fec51949cf8e22fdd7cf6a9ac8b2144d3dbe9d0012cbe890d7e6c8552c2e0dba2040efd664264a77 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD biosql-1.0.1-r1.ebuild 989 BLAKE2B a035872d282e58e54b472e70618bb340de900e2d49c7abf4893d82160ef8dc321caa640f1e0599b6b6d2f834159642dfa1c005bc5e1837dff769b418c04f33f3 SHA512 874448ac12a4e0331ec7b7b5ce8843928f92a6b42987975380715d39f7d0fc5c0cf688c4a596963ae5b008b55367fab3db317a8d17a19230d113e4d8e142c37f +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/blat/Manifest b/sci-biology/blat/Manifest index f8a3a9fbea98..c10579f78240 100644 --- a/sci-biology/blat/Manifest +++ b/sci-biology/blat/Manifest @@ -1,6 +1,4 @@ -AUX blat-34-fix-build-system.patch 5249 SHA256 03d563305183f9b40dbc6073f7ccfaaafc0240afcd7ed70da8638c43b7e5a2eb SHA512 1c4b592ef1b45ea19d84a798f4d526c43851bf8545d4a9aaaa8842c76eff1e0e31a179d1cd914e44f67c1d5ac709b97a73a5b7e66fa680f6531efe50b6dc6246 WHIRLPOOL b878a41fba2dda93fd0dbb32e5cea634aa7bd879d9b9094b130281b98c7a953a057df512d58eda36437a78248831b7e5bde8b07fd8807144fe158efcab0b8108 +AUX blat-34-fix-build-system.patch 5249 BLAKE2B d32fcb326cd204c847a678cabd3fc666ed9285876ec4a3f3dc1873b9b8c83042eb705cf62e63d00b6f388540571d4ebadc497eef51827a30443d3a2aebed9420 SHA512 1c4b592ef1b45ea19d84a798f4d526c43851bf8545d4a9aaaa8842c76eff1e0e31a179d1cd914e44f67c1d5ac709b97a73a5b7e66fa680f6531efe50b6dc6246 DIST blatSrc34.zip 2142975 SHA256 b764828fdf8ef4c9994ae4b6148340a776493475edb573b6adf63ae7ca9b2629 SHA512 67a1dc9a93d8ddee0fca7ce94096ecfffc71d4e0697afb285f4b64205e9eb62150a145375c29dd1ccb3cea8e8a7a71a817c8e73d7aba3e97616f1606b751afe8 WHIRLPOOL eace9c1befa8b3b019f0adc6047429fcede604c380ae52522efadb69dea2de4fb7878e961895abe7eebfcdc9a4c40ba16bb9479f13b16fde7f720933ebb7f323 -EBUILD blat-34-r2.ebuild 807 SHA256 e839e891e5bd99dc37fc667ec154c7a168eb31341860d15112dbff2fef24594b SHA512 451b189b505331cd7c045fc19982d55d11673afdfa8f0f9bd2b57cd23097c5a066afe477d973a0f30e1a47a8d1893abc552ef8ccc5f59ce9f3a66e0ceedc94b2 WHIRLPOOL 0b72a2d14033b09e692f8ce1d9391dc0e8f6433057b54810f1827625e811e122374a95fe7f88e1e23ecc1dda83329ba034e5395f6c99ffe4101949facc17f970 -MISC ChangeLog 2485 SHA256 a8b3f5d2e60062ccbc233f2b11ea21b4bbf3869c1cbe9e16c656438493f1cdca SHA512 4c4025e50e831076ab02eb8ea2e11fd1e0800ea6c5d50df6065c914dd72c9c3e09f10b55f520f2c24cef8a50383f694cbed6a53521209892460e3d074415b274 WHIRLPOOL 5e15c6c391137f039ea202277f9361b05b8dc447fa7709d7f7c10a9054b1c0ea2f30ab400fee42dbb1ff26e19324a2f2a6349b0a7a8b8db2f1940ea2cf32cb89 -MISC ChangeLog-2015 831 SHA256 727ef35729a38580c3b0ee1094570a011bd5ef617a4a532d780523f8bc03f7de SHA512 702193bebc1a967f6a4c9f6f72e380cfeec2ffc19885a367c1356b7fbf4eac4ed8acb20da023a5c2e38f6e5cf5ffa0e72a362c80b98c3ead24d1a44625a49c97 WHIRLPOOL 831cb7a9b8e69891f0922250c7ee68b65c9f4416e6e5c38c93a819f34b45371606dccc2cf0ea96c29cfda3d08f7951d4d45b5fe97f87f890f73e3c1fb5539fc6 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD blat-34-r2.ebuild 807 BLAKE2B 03979dd5b1b320c8560a8d9a50c6484fc052fadfd5e7d4cb80f3ac7a769f99b3da20fb42192087cd5652d947385de32ec9649c4d33b6f2c0430bfb5b14e9ce63 SHA512 451b189b505331cd7c045fc19982d55d11673afdfa8f0f9bd2b57cd23097c5a066afe477d973a0f30e1a47a8d1893abc552ef8ccc5f59ce9f3a66e0ceedc94b2 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/blossoc/Manifest b/sci-biology/blossoc/Manifest index 0a75c9164e33..7c4ad743da52 100644 --- a/sci-biology/blossoc/Manifest +++ b/sci-biology/blossoc/Manifest @@ -1,7 +1,5 @@ -AUX blossoc-1.4.0-fix-build-system.patch 8380 SHA256 ea66141979346a032ede2fd9653a71e59ce580ff9a89f4b022f2aff01b35315a SHA512 e1e97db5446916fd3ea7ca84baddde4771f6ee0081e17bd28e473a85565c1f0d1aa5e4385ee77a473f67eb5dd36eff7849dd334e31e4a4e1fb47737e3597e091 WHIRLPOOL ec2d035582d870204e6ee0dd201f05cb76fbc8d683da44c1c6787bd6eb762469038a76c8d6311579ed7af878bfa61577cbb737e0bd16f1024f276498ed7707b7 -AUX blossoc-1.4.0-gcc43.patch 303 SHA256 d8e558d1407d7e0f9ade2ff32fa84ee924a4412df55a9f270bb7a3f96d6e821b SHA512 600890d9e40f56923c84e181957abfb2e75b66992b3f7b406f15a6cdb779527868e6b37c573e9b22e81964ff0600080b73ec967df60ed8d9fcfc84c2e6810093 WHIRLPOOL badc2e444303838e211665472c9e13f1760fadb4107d807ccc270923eb35a33d64518024ffacc83c26e4dbc09e319011a47f03f41f4a41a39b9fae0c49c6f217 +AUX blossoc-1.4.0-fix-build-system.patch 8380 BLAKE2B a0d682fe3d831db664d798ace2fadc30edb2feb8c2a25b04e5256b4e5ee402c38c5f5462f62aa5044c6652c735e12752ca1c74ddc27b925b1acdfeb6b2fbe9b6 SHA512 e1e97db5446916fd3ea7ca84baddde4771f6ee0081e17bd28e473a85565c1f0d1aa5e4385ee77a473f67eb5dd36eff7849dd334e31e4a4e1fb47737e3597e091 +AUX blossoc-1.4.0-gcc43.patch 303 BLAKE2B 55263656a037453fa0e1ab6237dae51f1042b08164639332cf40017d4309465c43e8a044eda0ff11025625fcd3fe85a9fae210be9da2a59cc72c56aa973d09aa SHA512 600890d9e40f56923c84e181957abfb2e75b66992b3f7b406f15a6cdb779527868e6b37c573e9b22e81964ff0600080b73ec967df60ed8d9fcfc84c2e6810093 DIST blossoc-1.4.0.tar.gz 194885 SHA256 b23f51349f72f31263b8aca162c7590a5f52b72fd5e0d91b4a2591098ff5bdbe SHA512 fd47c85df5f1f97527e1abb1e56b05c02fa44c1c110abc222d895b2370324a26970446084e62adf02ce0c7dc332635d40dd1505d423571b424865425f6b2a327 WHIRLPOOL b826dfda205b93613519f84b17e3b1f9b28274b7badd6207f5fefa5117633cda4a4077394053d9add11f771e859f1d3d060e97d5e8d95010ba571e26abae5313 -EBUILD blossoc-1.4.0-r1.ebuild 726 SHA256 3b056fd013939020e72fcb6a7663ea63bb7d343606732733da945a2e2dc3cb13 SHA512 f345c811c9dd49b716ec91a5cb3460a763cc125fe93a5a45a29245a08544455dd9686264e69333c54c5cc736b2b5d0cd76bc7e9b3cd279c5264a83726d81067b WHIRLPOOL 19af94650fa624360afa2cba378de3d571ffd90eccf1eb96dc8156ed8f6714022be64487090e69fe14f47ebadcc55f41e565d3c934fc1b2deb5de5d440c05d05 -MISC ChangeLog 2464 SHA256 36beabb2c743627a2a722b8afef186f64142e7d7163ea2f6634fb5f34d22d920 SHA512 dc0d98d68f5ce9170b94a3676b9ed4bfc90e1c673d35276da5628bffc48d87b2383d786e499d13df2a7c8a6f9d126d9dd7351d38066f383ec3a08513e519e4f7 WHIRLPOOL a20ee188de84a159bd94c6daa93c998e6f12906ae6b8614b564d9094cfaa5b384e8c223fe91347693e4feb2b14da2b87a45bb57bbf028b06df304338addd7705 -MISC ChangeLog-2015 872 SHA256 7be6da7e6bc5838a5c738d0ea637f8d3fb3ab6e11a023b5ef02991c23d71605b SHA512 75bd413cdca1ddbdf5c645653d5fb1684aa0ff1252a0b9baf9aaba391e6831e731ab6566fb5b81c52a7bb84e01db9a84f08d21f599997dd52bc8802d21d72865 WHIRLPOOL 49aba78c0b6e6e4b7117256d5306d8657ba657f68438f8c72e60d7679733609f417a7ebaaaf0df2a3ec988bac436a3930c90d4f1d10da724d26546fd3fbb1924 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD blossoc-1.4.0-r1.ebuild 726 BLAKE2B 07e562bb5f5a1ecf84ff337187f4fef1c97b95d7a3f613020b8010a550ac626f4cf2896fb5e4372019e4366478f897db4dbbc7d4a854424e2cc6c05a891d4a51 SHA512 f345c811c9dd49b716ec91a5cb3460a763cc125fe93a5a45a29245a08544455dd9686264e69333c54c5cc736b2b5d0cd76bc7e9b3cd279c5264a83726d81067b +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest index 155be157845f..53a8d4da6c03 100644 --- a/sci-biology/bowtie/Manifest +++ b/sci-biology/bowtie/Manifest @@ -1,19 +1,17 @@ -AUX bowtie-1.1.2-_ContextLss-1.1-1.4.patch 601 SHA256 3fc2e55806824558c12e7d3ae3f4be77f9897f222e1de06c3ab39dff74fa7ad7 SHA512 e39ec6323cc6fee49a6ecf3565066d9cb8f8001af2701de292025f268d57dcfa3d4c35f3e2aed56b7e3835a955e5bfb595214ac232309fcc46c6d51f83cd9f2e WHIRLPOOL 5a65ab3bcf49679ff9dbc0225415a3664e924622f706605f00ea32c157b9f87f2d0eb13322f60c0b327c7395a9865515d8241ddcaf6b764a76053f67765ade24 -AUX bowtie-1.1.2-fix-setBegin-call.patch 1269 SHA256 ccf253e4b2fddef2a199e9fe2b93519f579c5b16e5a002723868ffaad3b07cc5 SHA512 8838a0d8b35c9ceb4be1ef3439eab5e3478dcfe11c5e59e327717676eceab413b07ec97dbda9fb3527ab61653a8a6e2d651b5bb4c24114288d3b07922348c5d3 WHIRLPOOL 165a698c19394e5dae98ba707352e2f35a89c1cbf9f71bfae55f020fab262d8624b0edd34282447afdb29a4e0b155ee4771c3d922e86037d4c14be1b3cee7de0 -AUX bowtie-1.1.2-seqan-popcount.patch 566 SHA256 a234e69880033368f6d5e7ba193230161054ac638200ceaec43136b934b17b9a SHA512 07b70a1941b98033967b8a7303fab94aa3a047bd5da9355f58f03af04f4515903cbf2698700fb3e987546998ebb28225672aa8fbfc65dd8bc202be8a26290838 WHIRLPOOL d74c3f739d1ee6b6c41630a83475af28de3df1316a924ecb8e6bf0ca198866c0a49c0d662d7a830bdd9824de27fce192c1feb26abd239515a4ae1bfe8977df8a -AUX bowtie-1.1.2-seqan-rename-ChunkPool.patch 11618 SHA256 fdbbe8921a3a30845d63b08ee91826db307a01325c691935a5133198dff4123b SHA512 3d05ea37c753c780163123ab8fdf8d149f0daddf4c52fcf81b1380951f132edf312b13505ea9afc2ff34ee4f3188b5251beb9e71e3c78f2eeabfadd4ab1ae5a1 WHIRLPOOL 13a4380084839fe379ee3a416653061d9f5e9f78252b0cbbf7b5ab647011ca23db20cd7d6f3376031c3a2ec4f5a172086fa6e6c9b1a634233d40bd4b3f1ef0d9 -AUX bowtie-1.1.2-seqan-rename-fill-to-resize.patch 3280 SHA256 a6346c3ed273541700c996c5524fd4c10b91d80fb3d7681f824150475b6e76e8 SHA512 e0a96c870670c6c38b48da0c0e0f3dc4f5e9b0654ecb1d55c22484472192cc926168a333625a582c470e2781f6e062d6704723feb29d7f32f2a19eb229622aa0 WHIRLPOOL 019948a27497a3f94bd7843768e4708e97ff8644a1ba57c8f57364539c1855c45896459471fe3efd612b107f9dc4d0f0d988c72201c78fd7d511ceb25a016d4c -AUX bowtie-1.1.2-spelling.patch 4157 SHA256 8919cee874b79a48cf6a2fac4354fb27dfe0037e914c5a1a635410d99646c865 SHA512 1679ecdaffa55adb2c1e206a77eba6052e4d9e65e476f73df795bf1fc9e323d34c20f4673a285701b067c65477b3804cd44a4c30b36ae5502f534a4cf191af18 WHIRLPOOL 45b8c72d54536c739626756315105702af6eca7315fc70919cb645fb0234e09b2e800aeacd13f4491d598ad8245d6cc6a7ed3d3bc370430f555ccc60aa933b77 -AUX bowtie-1.1.2-tbb-tinythread-missing.patch 554 SHA256 d0cdf86a1b40971879eb39fcb627680eff785321a1e5265203f6f3dfca133d2b SHA512 04cc9dad3a6c2598bde41975604a75ca5f0b1490144d2a9f91c049b04b8af80d95e8842aaf1b551ec3d9ca842981e72aa692f00b80971c067d7464776c1e78c9 WHIRLPOOL 0404e2c61d6bd932803aefdd179aa2d9fe2dfc8779e2163ef4e550b646794d8d69ec675a676e030b3c878d78f5a9e75d8b33ff2865e310222006d8880dd016af -AUX bowtie-1.1.2-unbundle-seqan.patch 751 SHA256 924d42e96e768393e29d1aeb2a48b4999f09d214b874e0f67216348429b90bd2 SHA512 9a68ccc98774a2c9ddb8f45b5ed009230d14d3e29837c6dd8aac34e298f57208361ef45d0e7d9d074495f3465b58f08606cced9e4fccb549785591ff954cb2b8 WHIRLPOOL 4f35e43c6164e58e7035984cd7de3b7255d752425b25b172cc822a5d3189c20c0c5b23ebd74de5907e63e1370ecd1f64bbe4d046543d34229bbf19c4ee3c4749 -AUX bowtie-2.2.9-fix-c++14.patch 687 SHA256 01ca17aa56cedf1743e85e20fc67fa60a4591af3415ebeff8b6b897392de20dc SHA512 3aa6e7a30fdf93ae564091ce9b87338ab9feccbd0c873f4130af71dc94fd3b27527b42a93f13471a2613bad44dbacd639d17515000f03856695a0021ce14dfc5 WHIRLPOOL 78040c29a564128d7df46f5e90e12a47620479a34d88a051293280605e930f99ca2ddfa96e22652b758f43002ad02f309c11cfc7bba13591c198d170b7b94038 +AUX bowtie-1.1.2-_ContextLss-1.1-1.4.patch 601 BLAKE2B 36de166ef2f22d6a6cf9a5773d62f74bd69241b2a788f376108f847f09be0811b4c0156e8a5ded0e0f724cdffa77ed0b79ade064c0268b91ff966319ac2c0d0d SHA512 e39ec6323cc6fee49a6ecf3565066d9cb8f8001af2701de292025f268d57dcfa3d4c35f3e2aed56b7e3835a955e5bfb595214ac232309fcc46c6d51f83cd9f2e +AUX bowtie-1.1.2-fix-setBegin-call.patch 1269 BLAKE2B 3bfa4fca8a94c600f6d405c4824cc83ac5838c0353f3e36417bdb1e88222902f786fe6f8e3e5099f577ca5044b2caf5d9eaf64876311ea9df4a5d4314bd22f03 SHA512 8838a0d8b35c9ceb4be1ef3439eab5e3478dcfe11c5e59e327717676eceab413b07ec97dbda9fb3527ab61653a8a6e2d651b5bb4c24114288d3b07922348c5d3 +AUX bowtie-1.1.2-seqan-popcount.patch 566 BLAKE2B 6d9d109fbbba2b85d22c923959ca0726cb9bb2da950b0b0b9aa84106c9b74c24d5bf997d1339273f92cffc5bf42c9852bf376dce260c1374c3374f8f230e395d SHA512 07b70a1941b98033967b8a7303fab94aa3a047bd5da9355f58f03af04f4515903cbf2698700fb3e987546998ebb28225672aa8fbfc65dd8bc202be8a26290838 +AUX bowtie-1.1.2-seqan-rename-ChunkPool.patch 11618 BLAKE2B bc4e9610bdde7dba741c7963c59f0361cca43e6224d1c4f2448d53111cbb0ac2d0cbd45a8d90948689bf0af1c511f180839a0b981c1588dda2f52f3a2e06a0d6 SHA512 3d05ea37c753c780163123ab8fdf8d149f0daddf4c52fcf81b1380951f132edf312b13505ea9afc2ff34ee4f3188b5251beb9e71e3c78f2eeabfadd4ab1ae5a1 +AUX bowtie-1.1.2-seqan-rename-fill-to-resize.patch 3280 BLAKE2B 00815454c116bc8b64a96668508fdddbf9909aefea84353031524eef479e60a540ed74512ca7c4e62d41e6bea4bed60cf102621390070b4f45bc63abcb2b20dd SHA512 e0a96c870670c6c38b48da0c0e0f3dc4f5e9b0654ecb1d55c22484472192cc926168a333625a582c470e2781f6e062d6704723feb29d7f32f2a19eb229622aa0 +AUX bowtie-1.1.2-spelling.patch 4157 BLAKE2B 2a48f2da1e68df166230fe35f9858b34b86962d97ec7d36a9bc0b19615961623ff2403dc630dae4cb2d4ade439b4b487762ac7be32efb7947dee3b2bb919d7a1 SHA512 1679ecdaffa55adb2c1e206a77eba6052e4d9e65e476f73df795bf1fc9e323d34c20f4673a285701b067c65477b3804cd44a4c30b36ae5502f534a4cf191af18 +AUX bowtie-1.1.2-tbb-tinythread-missing.patch 554 BLAKE2B 745629aa93f2e74191b944345b95b4d2e4e399a9e5c5a0f48690d3abe411076e4f71603333ff70050af8c63c2a9dcb753d1e9ceb1fa2ec066b9002a7f71ea96f SHA512 04cc9dad3a6c2598bde41975604a75ca5f0b1490144d2a9f91c049b04b8af80d95e8842aaf1b551ec3d9ca842981e72aa692f00b80971c067d7464776c1e78c9 +AUX bowtie-1.1.2-unbundle-seqan.patch 751 BLAKE2B d9689b298f21f4619dbbed96b58d8ae7fc5f646539ae33291222d282153b545ad6fb3e30fe1ba5f0f452e2f3e7e9706b6761f5d4184dcd5ad96a55ccc7b246be SHA512 9a68ccc98774a2c9ddb8f45b5ed009230d14d3e29837c6dd8aac34e298f57208361ef45d0e7d9d074495f3465b58f08606cced9e4fccb549785591ff954cb2b8 +AUX bowtie-2.2.9-fix-c++14.patch 687 BLAKE2B a75f473f429379789a97142d7820fb19fc1a64b764236c6fa1c068cefb03e37a58b41b0a515a62d42e85b3131f0dfe8f2bb856126528099277394674a0e53248 SHA512 3aa6e7a30fdf93ae564091ce9b87338ab9feccbd0c873f4130af71dc94fd3b27527b42a93f13471a2613bad44dbacd639d17515000f03856695a0021ce14dfc5 DIST bowtie-1.1.2-src.zip 7713258 SHA256 b1e9ccc825207efd1893d9e33244c681bcb89b9b2b811eb95a9f5a92eab637ae SHA512 3d3d69bc3a865bb577b5a91440215d0d5b606c7a8751d565e606e36adbfbdef695b1718ae81cd3e2682a39ca7784c4d00976441e7618264ad99b04c7f53c36e8 WHIRLPOOL 08cb824bf7a1ddfbe6692de67191aacf44776d7d4e0ab66bd2a13ecfffd087bc28cdde4c7285c781fa4759de0a239e68f87b702bcc2e24c9b81fda5804360ce7 DIST bowtie2-2.2.6-source.zip 5728779 SHA256 1000e90cdd90c3ca43c69d0d0ad951e190d36a6981a546f430a90ce86d64bfc8 SHA512 3ab5a5475cf214affd91e0d1782fd2d6dedccd979e3c809b5dfb272726d99ff1c7b59d92e387b187a7c2e43557786a1085186ccb96588de91212caf2eb94ce4f WHIRLPOOL 4fb02b3a0d76bbee0fe9abf91a71405922568bc38e593d5740df6279bad6f8b668df0debb0a81f3d3c23623558f34d842dd662a6838cf2d7f0fc8945fd00a298 DIST bowtie2-2.2.9-source.zip 5734235 SHA256 35b3cd8efc4c1c1efac6d94e626183bf4f8608b3a745fedd294c8fba46308201 SHA512 ead8f7641f3231638d986f9e500bc4ec7afe1e542048465bfcc2e93e2b2d2e499f0dd8aa5c1e3e21df285c9d195b187682eb7e12be4a408f6c50fb97c0e0a205 WHIRLPOOL ed8894096997ddd724c8999971a82b14bfa8149a23c040463c6f347ddce070a8c44baeb21bc1adc41a756e0e02c8f4861b967477c2f3469a71ca58b7d3e60aac -EBUILD bowtie-1.1.2-r1.ebuild 1643 SHA256 4cbba0d38dc3094a3adff5f655c59309436c5ace75d52d679afe502d3fa5c7a0 SHA512 8b5c22f29aafb5977313ea002fcd654ac991015f7808f02f8e02c2105dd9a6fa77b5f5342e82d38b07674c93dbe397333be78f6d1ca9a24a60531d6a40efe382 WHIRLPOOL 5f5a1e20bfbb76f05a6ddfe4820171475960d4c8220eae02851792eb6db25f7f5dbed032ad9d6b506dd34d803e91b108178d94788b2f6445bfec41940e76ae3c -EBUILD bowtie-1.1.2.ebuild 1058 SHA256 03ee85685829ea13e4881cc3c1c7cc013282b1686520790627cdd73ef055ac85 SHA512 33bd306019d37f3eb05922805e7035bf82bd40c21934c541bd6c56522afc1aa2ebfa900024d72cd0555e290560de07b1adadb98673100b934f53779c2e40376f WHIRLPOOL 784ceac92dadc36769d6746d42c102310a72a229119206782b69541895f70c99c9f85c430be00aeda48269fbed20eb9202e0415fa3f551b40d941055c53b80bb -EBUILD bowtie-2.2.6.ebuild 1230 SHA256 e00208c9d6b2e9190640ac98b96429984334bdbfd6bda6036426878da795858c SHA512 7c1546de18fa549defa619877688e38b2e90a5875ac9d6ca2728ae7788e495870efbbafeaabe0e3a79788e393e8d273b715fd9bcfef4267ac5daba1dd18a87ff WHIRLPOOL 512fb85c0e2326670f483881d3a32d5555c52b102e18988cd50e6b6cf9c6163692722f831ae57791f1591926bdea8786255f67903fd76d42eea6ffa3a818cd79 -EBUILD bowtie-2.2.9.ebuild 1277 SHA256 b888cb7026e045655a320d82d7118f9c137b2d980b9970df864454300a95389c SHA512 40e22698d5df241b8b98c601f8ed22276d39f4c9818bb23afec0a39b625fd38a0fdb3f4b4d6f8c01b458e2b6b3464a7ee8a135bd446f3488354eeca9934daa85 WHIRLPOOL 46434a6389e85ebdcbf550d36f7713bb2cd78da126973e4bbe2937e12837aded7be64a6cda01ddd5a834318f1c756b79953dd46c311c89c2050ecd03f48a231e -MISC ChangeLog 6732 SHA256 22371eb1d636f1f6149d2c0d3e22dc9756d640064066244e2c85a165813a40fe SHA512 75421973bc4d23cfcaa180ed68450d9b89b373a7aa7f9c37a5de7b8cf3a47dd52bd1a351d4018e503aba38346cc73f2892befb1390fc080c2d22e39e14c55b22 WHIRLPOOL 527c69ccb02fe08f8913e07d50f95185ef79ba0c8690018bab4db9fae7aa7dcbf8214a8492f22febe3a22042b23ca0807b8485a6c93fdd88db4ad267739e3d29 -MISC ChangeLog-2015 2855 SHA256 dacfc3ea38c770f70cc02d3a2a62f704b0d77ae35ec787ce53c2ddcd133a149a SHA512 61687de55717462065994d9062d9bc822b6017e85260ee68c7844794f1a0468f10aa1c46e5a89345df316943d1cff775a71469ba182989130abce86e438af712 WHIRLPOOL bdd1b06d50f740264b1eb7d447c9909a336ff8332e971f45b5d71fae1da27cf43cdec6e97506d2d51f06f93bed4ccb6d24c978c4410669b4681626f96808df7a -MISC metadata.xml 528 SHA256 ab2d080e80f57ea474804febc8bda7d480d0e18512e1429c6c762d72697ce860 SHA512 1eb83cbd7d7e747bc94021051ba6ae0bf22411091287b754851a9f6824b263b6ca83c9a0d055c0b6ab24963ceea9b32d76bf1b343f48a3ee4bd322fec539b301 WHIRLPOOL 32a4afad7cafe525f0da2c13cc632be5b061863562a7591291699d5d49b45aa831a15ca721e998fcc69acd1107a92495a38fc8826cf73af0ed83b85f52efdadd +EBUILD bowtie-1.1.2-r1.ebuild 1643 BLAKE2B 81f79b8b8d9b9a56061bf92df193a21e2db03bdacb6290020e8fb2426e3e1cf9e5a6a802cb6fa5f5f68be8d7f92f749e14c0c3528ebad5825d3927bcf33ca483 SHA512 8b5c22f29aafb5977313ea002fcd654ac991015f7808f02f8e02c2105dd9a6fa77b5f5342e82d38b07674c93dbe397333be78f6d1ca9a24a60531d6a40efe382 +EBUILD bowtie-1.1.2.ebuild 1058 BLAKE2B 4aae2773c629826866242b9c62f08e904d70f55b5094b46f727ae59d0fe75845ad3c809cde724753f0ada493294340e59a2290960f6049f3795d4352b9ca4a6a SHA512 33bd306019d37f3eb05922805e7035bf82bd40c21934c541bd6c56522afc1aa2ebfa900024d72cd0555e290560de07b1adadb98673100b934f53779c2e40376f +EBUILD bowtie-2.2.6.ebuild 1230 BLAKE2B 0382c42265c5fd5192d8d177f91f803fd4f9b28f107bcffed14573386c283d59e77d6ca72872f1c86c5f8a79f05263257865a39cfac64a8d4d6c77acb2aa299b SHA512 7c1546de18fa549defa619877688e38b2e90a5875ac9d6ca2728ae7788e495870efbbafeaabe0e3a79788e393e8d273b715fd9bcfef4267ac5daba1dd18a87ff +EBUILD bowtie-2.2.9.ebuild 1277 BLAKE2B b9cf9edc34af3f01eb1cde1510637bbcbaf7206d9a24135d859d14dcefe793abd0b78dd19dbcd1835840514e754061aee86a79d5992ca68d316c64c98bb4891c SHA512 40e22698d5df241b8b98c601f8ed22276d39f4c9818bb23afec0a39b625fd38a0fdb3f4b4d6f8c01b458e2b6b3464a7ee8a135bd446f3488354eeca9934daa85 +MISC metadata.xml 528 BLAKE2B 310fb406a0dbe56b194ae13cf521264e105f9d849b09e10d5d7e556c7d00a9cc7a0f9546a91e43f30344c9ec14a76e0d8a3f037fb4cb91bba68999d9f45b69e0 SHA512 1eb83cbd7d7e747bc94021051ba6ae0bf22411091287b754851a9f6824b263b6ca83c9a0d055c0b6ab24963ceea9b32d76bf1b343f48a3ee4bd322fec539b301 diff --git a/sci-biology/bwa/Manifest b/sci-biology/bwa/Manifest index 266fd9dce775..41fb7fd6a7f1 100644 --- a/sci-biology/bwa/Manifest +++ b/sci-biology/bwa/Manifest @@ -1,6 +1,4 @@ -AUX bwa-0.7.15-Makefile.patch 933 SHA256 58b08ded78471266c0b7bfc6042bc52100b38c5c72a4091a1d9391ee9569ea5c SHA512 d76d6aac355b2ad52d3aa1ca59defc33017cfbdcec96939db4807acf7f35d6bcd4e21728998fb0fd3633742cfd9edaa7b62ab1eaff26829296967fefdbc185b4 WHIRLPOOL ab34cbed56aa60c940b5b4949eaed488ba0e01b24d43976e8706759e2f55bbd8a9a5c407571c9bfe08e3f443e7b1e099b9537d216cc4b1c4583ed5ce9c9499f3 +AUX bwa-0.7.15-Makefile.patch 933 BLAKE2B f62d9b7f8c55ed55f9d6b63628ddc89077e8e01bb2c99e1c215374fd05114e2007ada0867d629c0b9edf2a700299dc6ad1bc736e5b0a2ae143695c03625d5532 SHA512 d76d6aac355b2ad52d3aa1ca59defc33017cfbdcec96939db4807acf7f35d6bcd4e21728998fb0fd3633742cfd9edaa7b62ab1eaff26829296967fefdbc185b4 DIST bwa-0.7.16a.tar.bz2 190773 SHA256 8fecdb5f88871351bbe050c18d6078121456c36ad75c5c78f33a926560ffc170 SHA512 8bbe223f79efd328d66adb88baf995e894f5944aad912ac1b464dc84dc9b4e22ddf77b60dcbe468e0eedc344ee58d08dc498777f0d2794a2c1e0ddd33dad606d WHIRLPOOL 624d94bb65fcfdbefa709f8e873b29f11d940c0ee54fc627a3305641bb15548de1162241ece07341623dae3b9970a49a7377dd0e634454cfef59a9c357f8b3ec -EBUILD bwa-0.7.16a.ebuild 667 SHA256 9257024bd8d19bf602d21037480e90495573842a09e6261999f0f0fa46b044f4 SHA512 16abfaeabcec740ba001eb2c34c6bda6c464698319f7d206fad7b2b5905636885e51cac4eacaa4b4e6c80fcb38f50d6a78a8a06ab977e0632f0cc1b8fbef8632 WHIRLPOOL c673627bc361f9a887e725d5c678a9632fc49429b283952dcb8cb309e5657add27d134ac208d9acfad829f7d2291ade198b7aead6f98b1ddbf381cf881a21912 -MISC ChangeLog 2881 SHA256 df9a86f76fa853e1a6e1fb2c344553a8657846266c9af27e6a6717d2acd22125 SHA512 174470347e2b9dd3c2b5ae4dad6df6c1693a4d3debc8802f33383bb4b9e6a30c0fcd4a5e8ddf0921a0037a260e4e7828e4fa7586d640780e7b246dc5b81897a3 WHIRLPOOL 25113d6a569c17d901fa126621e69167ffbf1de424c7971236f1ff855fe7c0e6a7900d882524fb23edec972f1d5e071c27d35482221fda10c5a14bba11b83fab -MISC ChangeLog-2015 2597 SHA256 ea33c05fa080e2b98f2ceff38591e4a057b2214cdd58c04ba19daebe51d45343 SHA512 526bf2b02393e7b652fda2b64f5af2c2510da6ac4d88f846de4df6180e52f2894d3b4e940dda020caaa506ce5b6ee7f477117c8ab9348801b043ff21f4d078ef WHIRLPOOL 5076ca1b5a01dae4c891c652fff9ce91ab3ca4aea2a1df7a46853e4e9e0a48829ba38e745cc9aa3fe5b72ab96ef5623cc03bcc490e9b5cb1b3e8271140e05a6c -MISC metadata.xml 348 SHA256 be690c3df0f30980eec4b2d88b01cb640f8c7ece9e3ca70a68f15565edcd6349 SHA512 512439b23a870d55169998b035a6f9d8a10c0746c7e20d1f969a11a7b98eef297e71fc8fdf600a20f321e1f95a2c763d3e98ff4f089952eec38138ebf0291c6a WHIRLPOOL 8b164fe0e886f396d970c5fe68321d353a13eada641b9a4a9436b2f42d8f82ba5a51f9e12bf243fb47969d502b39fc172a8e9d4b5aa05f1066ff65e390419157 +EBUILD bwa-0.7.16a.ebuild 667 BLAKE2B 145d99a62adf8f42eeace08892bea3024d13cfd723ff136c055144227526a8563c97cff5b79fd0e48bfdd4a0b73911faa7862368f7c64f0f4c9b4b86e92188ce SHA512 16abfaeabcec740ba001eb2c34c6bda6c464698319f7d206fad7b2b5905636885e51cac4eacaa4b4e6c80fcb38f50d6a78a8a06ab977e0632f0cc1b8fbef8632 +MISC metadata.xml 348 BLAKE2B f6e4a9e3beee19fa7b231fdf89cbed2f0bcb96eddb8e7be4d47b0f6f78253ad747e89f803edc5b929536c02993b654af5933c1d4470284484d83c6724b38656e SHA512 512439b23a870d55169998b035a6f9d8a10c0746c7e20d1f969a11a7b98eef297e71fc8fdf600a20f321e1f95a2c763d3e98ff4f089952eec38138ebf0291c6a diff --git a/sci-biology/cd-hit/Manifest b/sci-biology/cd-hit/Manifest index 2f50b126b920..d6c0bf3166bd 100644 --- a/sci-biology/cd-hit/Manifest +++ b/sci-biology/cd-hit/Manifest @@ -1,7 +1,5 @@ -AUX cd-hit-4.6.6-fix-build-system.patch 4006 SHA256 49944712f599aa023086f825bc56f9e4b3c629c2c28da6203ae3e379fab73aed SHA512 84aadb9967ad65d04127468edb161b8725a5b1468586320eb89d4b4f5f97ad7b60da9728fa1088ecf4aff179a6bda36675add9a255631cf9359c991b61451c6d WHIRLPOOL 674e127461403a449b7789009a25688b8a76fc63d5161cc7c51e1b0c08d39d510982aafa65ca81a5c75d12cab8ad4d5c6a8050e3c89d5e5274213c6cfb5ad3d9 -AUX cd-hit-4.6.6-fix-perl-shebangs.patch 4909 SHA256 94a650eda4f8beecf894eb216dea44ebcc507757cd143b59ced94e2cb779168f SHA512 3ded78d991ee922761a3a7395b4d422ff29c6fe1c0657b61ad74bc6f9253c7dc82414f8d71cfffae37cac192e96ab03f711257d3091cdd0c9444202bdf5967f5 WHIRLPOOL 95baf2dedea0f9f32c14631490b650279d1ea6afc4fede2196301add1c81beb753f89a15e99195c98e044fdd6b91ef8b4706008fb7b7c015775f0305aadf7009 +AUX cd-hit-4.6.6-fix-build-system.patch 4006 BLAKE2B 28e19d8dbcf2072c1e348c0f4d1784f8ee0375b58fb6233f6bc2a7634c046694b0add6910b513b089b4eaf0fcc0c7c43d91534583d2b0e45a7c7396ff9fff24f SHA512 84aadb9967ad65d04127468edb161b8725a5b1468586320eb89d4b4f5f97ad7b60da9728fa1088ecf4aff179a6bda36675add9a255631cf9359c991b61451c6d +AUX cd-hit-4.6.6-fix-perl-shebangs.patch 4909 BLAKE2B 2bf82ee2713206d4782143fc04f2a924b742cb50ee9b1c99aab3a3f6d1265dee78009106970329146f068544caa4edf5878bd9ee3aaaf69ea8e418702ef1e069 SHA512 3ded78d991ee922761a3a7395b4d422ff29c6fe1c0657b61ad74bc6f9253c7dc82414f8d71cfffae37cac192e96ab03f711257d3091cdd0c9444202bdf5967f5 DIST cd-hit-4.6.6.tar.gz 1152570 SHA256 97946f8ae62c3efa20ad4c527b8ea22200cf1b75c9941fb14de2bdaf1d6910f1 SHA512 8241d6674fb041559792dbbb58c12b41302d2275d3bacb1362946094b48a0b8e1236e71b5dc77d13405220b60f8253e6f996753a8b051995a72c8353d4333c51 WHIRLPOOL 4ee404e34a9c22aef0b809568aa1a7cefcd8d08e4a8c97d1c65b7692ae14b0567e5cc446054083219b56e89895117f69f786e6183f6c67d03d1f8404f7ba9632 -EBUILD cd-hit-4.6.6.ebuild 997 SHA256 a3a6f4ae0e93e513905a55018ef1fc54006807ca42854c5464e21aab69fbd747 SHA512 fe17e01fc04944df9b86b98dc73a4be2f14300938e3e926f56c952eddad62caf846f0051a7c3a66dbca3132f3a79a8bc21d7a43206bd6d9d784b24c94c3204b8 WHIRLPOOL 2964aea497885cf086595fcd5f3e7df8ff9054332fb61555a82bb3b6fd7f54b8879c0d3323cb65900c92c63c3d85e092fe6efa2672fe6ce96573a0d84516abc5 -MISC ChangeLog 2808 SHA256 ae22b2153dfaa545d390a685df77d0cdc3309e922faaf0b20e61de7147fe3087 SHA512 afeee1fadfdb696838b35b2ad8427af91aec119a0d5c6db778cfb8041822b89d78bac8318b817df483f1d4e8663981d656af865e39f6b45d1cdca184272a6de5 WHIRLPOOL 9eeb9e48ec79dbe2c14b82d2409bbfdc1c8dbc40583a57b4bcb1203b407801a68a9a7de65e2283ebe8a82cbc08ace18c0682299058126a0b3103f9fc2bde4f2a -MISC ChangeLog-2015 869 SHA256 a3970c7e0acc384777e16dc34932f9d5bd9e51300123b1c20fd620be2e0ad02f SHA512 651b1a62dcbceec38ad3e542a3412cdee5d76e1b47cdfe8888b443ab3cf1f7f6d4e6251c101717a8de63847a674aac91e16e5d57ffff0b91615a6745e52bfec4 WHIRLPOOL d243585b6753aa0de8f5572f3307b8a8602dc67771425d8240886460013325572450acb20c7d6d1d1df0c9229ad6451a9e60778cba7580506a8998097d3fa9e0 -MISC metadata.xml 1351 SHA256 075c677ea54084f5b587e80741ffd32686d8bdded9dee8e7242d3dc33fbbdcbb SHA512 691c92d76f2bdb3ed31a802fb1003905942abfb7cef3c1d08848e69cc819082e82540217f7fc79ad39d11a2d43c45b845617bd8ad1282a7bde505ed8616b5364 WHIRLPOOL 9e0529fb4354c4e392b6985165e75d780bde0a3f3d9ce1cb40191ff752e771e62855328e24cf61746d44f690542bb1f833f5be690bb5cd1def64e5ac765371f6 +EBUILD cd-hit-4.6.6.ebuild 997 BLAKE2B 1305388e83140df2e024bc64546b96e849a9f70095dabc29c79ab0a078dff9fd33a091d05df3f07323391e627f28877ad77f52fdf890d20cef5832df0e3053a9 SHA512 fe17e01fc04944df9b86b98dc73a4be2f14300938e3e926f56c952eddad62caf846f0051a7c3a66dbca3132f3a79a8bc21d7a43206bd6d9d784b24c94c3204b8 +MISC metadata.xml 1351 BLAKE2B 255adcb4a5ead5f03add4537d26ccab28869e3d9c883d25be9737f145b417dce343e3ded6732eab937022b949406eded039694b6b67e13c1939e05ccbce96148 SHA512 691c92d76f2bdb3ed31a802fb1003905942abfb7cef3c1d08848e69cc819082e82540217f7fc79ad39d11a2d43c45b845617bd8ad1282a7bde505ed8616b5364 diff --git a/sci-biology/clustal-omega/Manifest b/sci-biology/clustal-omega/Manifest index 7c07314a8c9d..93fccdb52629 100644 --- a/sci-biology/clustal-omega/Manifest +++ b/sci-biology/clustal-omega/Manifest @@ -1,5 +1,3 @@ DIST clustal-omega-1.2.4.tar.gz 1170516 SHA256 8683d2286d663a46412c12a0c789e755e7fd77088fb3bc0342bb71667f05a3ee SHA512 b31514c30b412d731ee22c9020156b65a6a6cbc6fd51edc195d17b560935184bc070feeb58964c54df9eecdefb00e5a21ce859cb0ea69d92917f6bd8e93b819e WHIRLPOOL 86fa6e6f4db128b122abeee470a7c1b0150e64f38d58c6ba620b4b9afd65d91f55d6971fef99b0dfd10ccdc550da1d195eec9a91cdde271947e7a703ca2384d3 -EBUILD clustal-omega-1.2.4.ebuild 649 SHA256 0d5de21a69cd4630618e2bf0be42ca349a715ac17a1b866a1bcc51cb8d348974 SHA512 61ce83c18a97f09dc0750a2da7179aece9c788eb2792fac799a343e219d11f11d7a60980f791313b0963a7aed720d076e55e05c6134155be07e61e18b382c6d8 WHIRLPOOL ee39b39d2ed5f6ec025089678f9bcbca8e62d0094547749e5edeaf6990daa6a12c59681729d9315b8427c90ddfaaad8ac321da50b4a612c7b4c3533542c87b2b -MISC ChangeLog 3785 SHA256 a842dc01b391baa838981038dd87c7b73d8a0f63600db8d7f90bc1ff527b2fd5 SHA512 df80f6697c3bfe68c3ddac0eb11d2dbee49139febac56e98d91f027069f9317cffcb47c4f1c4004c63c8e8b1e19fdf49805f77a1a82edd73a3772f0e94cfba6b WHIRLPOOL 754f631df983677b42244ad7ddb3f475dd74c0f3cdbb6532f31179034d15cf77c5326adee64616d35c03986403b6e6f86d2c850f258e264a86c554fdb05fb4cb -MISC ChangeLog-2015 983 SHA256 9bf682d936740ca31893c01086365cef2438a6b6179f00fae9cb724067e2774e SHA512 d07bfee9607202f8a18d60eb8e47f4d4d5a37321dbd6d9062f9c4eb40cec4c30ff22213a4509ef0881d3575d4fa98d3d9feb7f02d31c4291e08d8ba32c1738a7 WHIRLPOOL ee5ca31af996575f881ac1fbf570280f72a2baad8229c6a60e3c87ff5f4e02072295be6f31becbcaf146e49002b275a32ebb770a41c3eaa042e42f062c1ded12 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD clustal-omega-1.2.4.ebuild 649 BLAKE2B c3cf4ed978a758f0f274fff4469c8ea51567f51619121b00bcaca3777ee6f7e3ca67d117437e99f839fb68aa4be6b98383a5a883ffd854f7525586017e787cde SHA512 61ce83c18a97f09dc0750a2da7179aece9c788eb2792fac799a343e219d11f11d7a60980f791313b0963a7aed720d076e55e05c6134155be07e61e18b382c6d8 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/clustalw-mpi/Manifest b/sci-biology/clustalw-mpi/Manifest index 62795800b403..4f9ecea4fd34 100644 --- a/sci-biology/clustalw-mpi/Manifest +++ b/sci-biology/clustalw-mpi/Manifest @@ -1,6 +1,4 @@ -AUX 0.13-gentoo.patch 596 SHA256 10eb9b964fd565833542075a470f70cb4b5624f436b661f442d6951bcf6ebc4a SHA512 4b0350f9ca8ce0d6e098faae5749bdc120b853dec745a07899e81bb195623affe46560d28a3c79db7af57551c9c873d91e693ee30a5c185ac4d2adb26a9d27c8 WHIRLPOOL ec786caa4e73a6a51c643bd756f3f8f6b1dc837c05d57b3fddaddffb52c1b378d00ab48af96992a5c4093874effaa90133e14a1d6e87f7e970a309e246341aa3 +AUX 0.13-gentoo.patch 596 BLAKE2B 3d302656dfd4a4ecae645753643a9bf93c9643818e61f8ebda910eeea668bf5c5458f670e84243cb044cdad1add35a26b365f3478eb6f7ef7f98b8bc6bbf6f55 SHA512 4b0350f9ca8ce0d6e098faae5749bdc120b853dec745a07899e81bb195623affe46560d28a3c79db7af57551c9c873d91e693ee30a5c185ac4d2adb26a9d27c8 DIST clustalw-mpi-0.13.tar.gz 154911 SHA256 2fcb0dc0001b034f2931153654fc66d67db360f0bf3fbcde19dc389bbe145845 SHA512 e0008accb6c07584dc5ad1b953e0c668fad43ca3a86d88dbcf50fbfa858870131e4db005cc87b46f5268cd0795e9a2ce01326d8318d66b694a92b85e6f9635df WHIRLPOOL 850e1f8daff5aeede4bc47779bafa7f331017b854c2f0926fb31b6c40aaf79fb5f8e7605bddee5a9d52043313b578bf1f4e14f060c387ee1ec6e65170fd9fcd7 -EBUILD clustalw-mpi-0.13-r2.ebuild 962 SHA256 4a27734b4e9d3b5b435b7116198acc2038d604be791f1d926770cef8455c8b1b SHA512 48cd3c0ff42cf9c5185e70d0fbdb1b21020a7ad75156adba06346b7cd6847dfbb2752164edd93238890ef55d38565cdcc196355094ca3e8e253f3d508b409ef3 WHIRLPOOL 735ada0efe55c89871fa4ab658d8179632f232d8ca8b1e8f593423e103295cfa6b5d7a965f42901aab50feeab18a6ef619aa9bd38ab6e027b0651e61546b2d7f -MISC ChangeLog 2868 SHA256 a40d8ca1cc9be26f63bd2d65ec0af55cf15fca402851958bc0101816e235bd33 SHA512 cc8e4dbae133e4b4a076afeeb64cc20fdbe7e17bab16f51861394c7e033c0e5444f53350089d6fb7f387a31f2b057631bf8b58f7c1d2b075303bfc78e1e39b83 WHIRLPOOL 3b6d67855b3d5f3df6dc011910d30dfb61d2ebac562766897495df91fef3c10665bf7917a09f8679d1b5db794eb1a2a52e27435ca46c8dbff748d88ee57653f0 -MISC ChangeLog-2015 1225 SHA256 f8b8e736c5c507e369ac2086f005afd8d8c370787e3660e273a60418ac13991e SHA512 1e75b3049bd51f5c38eb442cb102a9d177c24ed48a681b66c5993f2605c42d24b3243cb0c0c01a0552e276c75085d8ae48acf5d32c6f420e3067f89030ca9e64 WHIRLPOOL 27a9a93ec382ed58ceaf428a84fc7a537913532ae55684d9486e9f635895c8053b85c10da1fc9dbb10524a2bb59efbb37e77673b78b871a2ac0c12cca3a8605f -MISC metadata.xml 491 SHA256 0e59732460a71918988171079534c51664ead8f709d1d88b7078a19741cdd707 SHA512 d242bee2ea381f992deb30b406b89ec2da08e1d513da5d9a94016ea07247670744d25bac8175607291c39d80090d3d1746154d3c60ba95bdd720d57c0212b3d0 WHIRLPOOL ef93fe44fc1a7c7efa0c2464a5dac277714f5b16e75b1803709441493475724227bee8d6fd214d2f60ab6c6f444f4d1c4466975b44c864df0c63a42e5abdd7d3 +EBUILD clustalw-mpi-0.13-r2.ebuild 962 BLAKE2B bcc71a3c09ae2d9e3c4f41b6a4e0771dd778c3cbdcf650cb9319124834a02d40b129757675ea060b6d39c699d3b123b757129f08b8d98c65b619b74467d8bd4b SHA512 48cd3c0ff42cf9c5185e70d0fbdb1b21020a7ad75156adba06346b7cd6847dfbb2752164edd93238890ef55d38565cdcc196355094ca3e8e253f3d508b409ef3 +MISC metadata.xml 491 BLAKE2B b65663a63fa098ac80bc0226163188776cb7805688651ea22724ed457924a3d970e5e368210a994f536f9152b3af2766d07c1eefb8b620299c3e1efffda840c3 SHA512 d242bee2ea381f992deb30b406b89ec2da08e1d513da5d9a94016ea07247670744d25bac8175607291c39d80090d3d1746154d3c60ba95bdd720d57c0212b3d0 diff --git a/sci-biology/clustalw/Manifest b/sci-biology/clustalw/Manifest index e4ef57230a9b..554d756d8768 100644 --- a/sci-biology/clustalw/Manifest +++ b/sci-biology/clustalw/Manifest @@ -1,8 +1,6 @@ -AUX 1.83-as-needed.patch 388 SHA256 e33a1f6f3db1013c3dbd7f35c0dbf0a3665e23d1e2bcad58aaffef046139beda SHA512 1f66a0b539f9101a52b4117d0369294f706a048464d1908ae457def27d33ace0e5c5f9ba507f82a1406bb78ff51896ac6bb76cb03dfe8ff6bbb8ed182dc0f5ea WHIRLPOOL 9c0ca960b32d97b3a7c0f7da468db566c14122b945659c7c36b2cb5c56201373fcf3890654f3371f69d6c188a3131aecd05ce5fc0b98578f331c52cd73164dff +AUX 1.83-as-needed.patch 388 BLAKE2B 8da98e05dcdc74ee41ff7a3d75b11590507bc769df0adb181f7c2d0a656f80d15b7363723bd760c359efb666cf962f5cf8c055abc1b7181d37203b0bfe659717 SHA512 1f66a0b539f9101a52b4117d0369294f706a048464d1908ae457def27d33ace0e5c5f9ba507f82a1406bb78ff51896ac6bb76cb03dfe8ff6bbb8ed182dc0f5ea DIST clustalw-2.1.tar.gz 350761 SHA256 e052059b87abfd8c9e695c280bfba86a65899138c82abccd5b00478a80f49486 SHA512 659cfe0121015dd2b84578b1a0a7f016fc944de155686b9bdef31122200a21e792203f3a6ab93a31676a50ffb70858b506ceb7ac27d921189a8381dbe0887921 WHIRLPOOL 93158f400cbdf11ecddcac15b5b4cee9af61d9b933f7100ad18d01d346de54c6bad5a9a12fe5a70a265c92581d3ee9cfbc41b17ee2c2ff80ff2a6658efba5f40 DIST clustalw1.83.UNIX.tar.gz 166863 SHA256 8b757e02ae95ac0a0dd37db640497aa90f7a13a11784ce2a17f41b64e3059c60 SHA512 c0cc9ebf4c8869be819065546b499b547990342c87425fae8f921a141704343f2a518ecfc2b8bfd527061902825fc5befcb2cd080c83ba887390e48338c9dc1a WHIRLPOOL 5a075579737d8a9ba5f62d6f90feb53a275bd31a8131d1b7d21395cf46cfefbdf4e48563b55734c995b9e3d8f9c37c78ea77f4e48920d64781190645ea36112b -EBUILD clustalw-1.83-r4.ebuild 824 SHA256 1c5f49bcde9073b17aee1a3282941a1c03aed2f8773da45b0d4b02587e6ac037 SHA512 97e40cd79197352d8defa750fb57520a5ecd30eac6f41d81b85f49420af94a7a504bf3ba9ad9618c2927110faba6e85797f12670573e2e994572023734467e16 WHIRLPOOL cba585dfb928d4c07680aa0b0a2aa77e9c8fed5b33f62ca1f0254f50e2664a403e3b63c6ad5bf245aabcc99c8df6617f56753cd70e77275e66ba6c7471ee8968 -EBUILD clustalw-2.1-r1.ebuild 473 SHA256 f960b2a48d887dfc636efbe4eeff8172f2702ff75067e03b4c407cb5c2a3ac4c SHA512 6cd64a7ffa784daeef1146a695e588a78e74b5b453e3cc1751907fbe09aa394eb9c962e681ecdef9eb2627d5c490a49ff58484c2c77599f169d48482521749e0 WHIRLPOOL 683f8cd89e1e07b5fc91320549f8c7d7603356a904a998ebdd6b4e873a8d293ce211fe383d4f26ad2479e9249f6f9a77a3819f3f3fca715df5853f001d008e4f -MISC ChangeLog 2516 SHA256 4aa3c7628562abc1b96dfb5d9a68b876c3da56f508a687746c5f56caf41985bf SHA512 0177097c7b1a0dec9b41dd2a75de7bb193d841cbeca7abc62e836f7ae47761767bb7b7e5c7cbb95511fb8402bcc4ec87252c4b0da33de504ae5fa3747d5d100e WHIRLPOOL 102b17858df91a6a173ae0efcc5ffe52fc1183c7e2f0a016e8c84bacfcdb49269bade031a3798dfe8ee606ec02bc2bdb00ab71eb86cfee30fb92f39687b48945 -MISC ChangeLog-2015 5879 SHA256 7a6574e0fd8cf3d0090348b9d6ebe619b308b58182ae07b767cae457bf5e82e3 SHA512 e311413aea1e6a7db82e2f0216fe3d431b9b6950e8daf18daf999c8c2a919e781c12e5036f600c955bdaeb843e5c9549f46caeba7763dadd5d9afb07470bb464 WHIRLPOOL 1661399da67ff7033d57b46401b67410faf266c52c63db10d0436f456395d1d4d91a4b953b6005d57cbe530f8d05b7a53e42ad5dd1c0c0ffe7e109d01ab15e6a -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD clustalw-1.83-r4.ebuild 824 BLAKE2B 65b1fa0d374a4cf3337e465945e6be0c9159eedc3b221935312c0ed5a682a6408733a6b0c198b354b70f9ab9ee506baf5b31d6c2efb694cb0664d0064c893a36 SHA512 97e40cd79197352d8defa750fb57520a5ecd30eac6f41d81b85f49420af94a7a504bf3ba9ad9618c2927110faba6e85797f12670573e2e994572023734467e16 +EBUILD clustalw-2.1-r1.ebuild 473 BLAKE2B 76c7432b4cd6d68b5dd51bdc9b4e1629d8e958f432bb9c35738373bc7ea34180e74c9d0ba498d02e5d4db3243ccd711255157490d4b42d84bc7b0b493f526234 SHA512 6cd64a7ffa784daeef1146a695e588a78e74b5b453e3cc1751907fbe09aa394eb9c962e681ecdef9eb2627d5c490a49ff58484c2c77599f169d48482521749e0 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/clustalx/Manifest b/sci-biology/clustalx/Manifest index 0f69514f9a9d..d5c479d65a52 100644 --- a/sci-biology/clustalx/Manifest +++ b/sci-biology/clustalx/Manifest @@ -1,7 +1,5 @@ DIST clustalx-2.1.tar.gz 341649 SHA256 e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 SHA512 e8cbad783722161de6999ab01a91d555fc10db609197a8d2878f91e9d7dc998784c02d2ccb54c4936ee27b41321db6f4f37021221662f483b8b6d945b6e1c026 WHIRLPOOL 6cbe8dcf2be3a535e8ac0ef0b9b476d4429a80bd94b394c0194f46ed039f9ac2b97b0ec2ed680838a0973b3187b2dbc90285733657975e03288b9840ba3d6b15 DIST clustalx.png.xz 74808 SHA256 7d333fd7e96ebc5709ec061e6be4123aba764a6127133cc8df5452f62e0d1cf3 SHA512 0907710c944fc1b883c58501cd7bc2abbc5bf171495b58dbe9829d60d7c3530c210f89a5bfafc3cec03808ae50f5c9a78ce37b9175c2e37590494e115e8e343a WHIRLPOOL 7d48b4be3ec61d3bd3017a0c0dbf0c3d3970b338cc1050a9c4173d06d268996a733c4a19202fba13e2cd640b72f02ecc9013198a821791edd820f16b5371d234 -EBUILD clustalx-2.1-r1.ebuild 1093 SHA256 b4f39abd38f9ebbc9a4c178a6ec6837eb99d4a6a74d9844d28a7fbeefdd193bb SHA512 997c71482dff6f73841ba912904b9ea34992ffd9dc90466e233017857a93c11a2f930ff242bfc0b1309bedbf4e6be2556bf26efa9a9f7dfe83d0e96abc06e8a0 WHIRLPOOL 95803878825a337224afc5262ee6a2549f1458433065509afb10548a6d578256ce1c0d62cf13a72bbcf33a9e5670bfbdd25d3a3831f313817b9e08c50c4544e7 -EBUILD clustalx-2.1-r2.ebuild 1225 SHA256 bd6017020c3dadd734c715ce3a84ff53e7b42757d3e8276b4553d7e764cc33b0 SHA512 6d0d46521bc2511dca32363e7faf6ff550de74f6e6fcf22f0d3ebd7cbe0f10884dbdb52fcfcba034b4185419d2109663bf1e589d072937b6bbc012fe5ad5c250 WHIRLPOOL 2003f17749c8a87a215fbe05559b1786b40b506ebbed6ccc55298469e9aa7d907156f6c681ee991b8aa6d7517f50c9bd6e70d1f4a830d125ba8b38439b21a926 -MISC ChangeLog 2435 SHA256 b33fcdca9b59ad94c7d48e3dab398f739247e3eb2ba919fb961c12612de3f2cc SHA512 5a7fbb5e2f10c495d2c04222a4e194b5e739b03bfd97fff85f604975ddbabb628d2dfe7b9fce774f480d4b517a455a4da30daaf63b6152bef1b51d44638f643a WHIRLPOOL f95f113d6410eea87655d67ad7a7e29593459bbbccb0bc265195d12fd8d0769c885888d21f71c3766a6875b333c14dcd90288262ea694a5629a6a9b1ee8c13ea -MISC ChangeLog-2015 5285 SHA256 488232e993e1a5d379fd4335175226efa20b7a19d120c84aa2b23406409abf15 SHA512 07c2a77c647da4bedf95a9f353de9353f90f51b838379a0eef96d401ecd073688283991a200cf1d0b93e726db3d38dd60c1def58b1ba132a1ccf65efad328e7f WHIRLPOOL 984359f1319c3a55cf2cf722c026e65405d749287b5367b9379a82502bcf0ce0911ade41d6e2fab8ecae30b77d81d7bb5be2d43079033c964f395dd26e9fe8fc -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD clustalx-2.1-r1.ebuild 1093 BLAKE2B 369910c48ad315148d210bf616980a483ca37ec9a27e227876e4057faed667db1ca4bc8dfd760dcce2ccb1d54a3fa7d4fdf3d762bdc7b89908c8bdcbcd2610e6 SHA512 997c71482dff6f73841ba912904b9ea34992ffd9dc90466e233017857a93c11a2f930ff242bfc0b1309bedbf4e6be2556bf26efa9a9f7dfe83d0e96abc06e8a0 +EBUILD clustalx-2.1-r2.ebuild 1225 BLAKE2B 458fb581439821d8eabffc507148a830a74e593f84679757699348d65f1bbe076e5fcba21f0fd2d083256d0de63498378ab87f4a3d74d5f3166fbddd93437954 SHA512 6d0d46521bc2511dca32363e7faf6ff550de74f6e6fcf22f0d3ebd7cbe0f10884dbdb52fcfcba034b4185419d2109663bf1e589d072937b6bbc012fe5ad5c250 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/consed/Manifest b/sci-biology/consed/Manifest index e997d2a6f419..7738d880d777 100644 --- a/sci-biology/consed/Manifest +++ b/sci-biology/consed/Manifest @@ -1,10 +1,8 @@ -AUX consed-29-fix-build-system.patch 5614 SHA256 652a970de74eebf12e7b7693bbbc953d4bb6662c29ab970d39c8b696ad0b2cfc SHA512 ea649079d5dbff21206bf8f56729fc559f374120dd3336499677eb65fde247739f41efdb29a3df60225ec38efc6802608aa2410bf4ab77f8d76bfd31fdc710fa WHIRLPOOL 597ee496f0a85371e9324d05c71350227945f6d436732347f4e86a2ccccdc59d948c41646bb78215275baa677d9e377dc88146267fd8d6cc01f4b32de4177482 -AUX consed-29-fix-c++14.patch 9261 SHA256 1cbd45895b083c3e8ff553f56da0e19d8e67866df8e38026e40252e20f8ab109 SHA512 be5cd76d36cf437c1113d09e540d98d0eb92b7e2e732f4a5a308066b8046b5628048203e791a0fa316e44a4cc127d027418a7f038406df22c3f60552f5b87789 WHIRLPOOL eddfeb0f11561107ff174adf0acfb3b6440f803b2b7410d372748fd1c2dad04185ca25e59c99a4d9c137af69f2f00be1bf9bf6a5813c5ca07a5afff6cee382f6 -AUX consed-29-fix-perl-shebang.patch 17375 SHA256 cdf3d2868fc69c2ff62897031d7e57e4b215b9d33ef07411fafd193fec2ea380 SHA512 4caed1ab7229e2b3e367f03a8d650cafed2974232fcd6daa08e62c90512d49e09caceb34c5bb65c67a588bab314165d72d8c1687393549d4107425df78e3218d WHIRLPOOL 7f7c36100a995f733bb126e637f470e4191cfd0dfb066ccce2fce6e7cd46cdc217811aed969c9235f5a9d64ecc032f6f3366a2744665c94ac486b714619cc6d7 -AUX consed-29-fix-qa.patch 11168 SHA256 8d024a5a8ac13411dfbe621ea7e9a968a802f2169822fb917085408e0d1eee44 SHA512 088d774159b421666bf75f6f9f17ee83d488625d482d8d404bde12671025b1f03322bee5c50e792fbbd822c223fa5ee697cf99c7efc9fcbebc119314d02df604 WHIRLPOOL d5464e848ad6af177963908eda8f18e7999faaaba50e67b05a9b7f365e24c6e6e49146afc922801b0f6ce7e6dbd372c2dc7c9709b3047aa3b2ded9f2e93cb9d6 +AUX consed-29-fix-build-system.patch 5614 BLAKE2B 8b145d01e5fa6935715e7775d8e415b43184c4dd067bb3ad3eb72ef870b6f18d254f73a1e512dfb55376473df5cd3af70b4050daddf354cbe7a61773aaa9a13a SHA512 ea649079d5dbff21206bf8f56729fc559f374120dd3336499677eb65fde247739f41efdb29a3df60225ec38efc6802608aa2410bf4ab77f8d76bfd31fdc710fa +AUX consed-29-fix-c++14.patch 9261 BLAKE2B ff70814b39780dbbabc70eb7555359e8aee2ef72b40b7e149e2f63ccaeedfe7e0dc8822cb2b5c79d57c33e621a59e0e1cd273e49a0976daef0bdeb52f4f46569 SHA512 be5cd76d36cf437c1113d09e540d98d0eb92b7e2e732f4a5a308066b8046b5628048203e791a0fa316e44a4cc127d027418a7f038406df22c3f60552f5b87789 +AUX consed-29-fix-perl-shebang.patch 17375 BLAKE2B e34a358569d594f4ab60fc3745a6a84cab781cbad860421f5ac322154df9635e13b2e2349c92f4271b0ca161eda87285ba89bf0801992954fecaa11575c8baf9 SHA512 4caed1ab7229e2b3e367f03a8d650cafed2974232fcd6daa08e62c90512d49e09caceb34c5bb65c67a588bab314165d72d8c1687393549d4107425df78e3218d +AUX consed-29-fix-qa.patch 11168 BLAKE2B 139b52d402f27c8121a43f933a181aabf150c0c8836f2facc7b42909db3808fab1ceede30956d6b3c2462ad31b43e054c0bbf8552e57e6e41479d25eb111738b SHA512 088d774159b421666bf75f6f9f17ee83d488625d482d8d404bde12671025b1f03322bee5c50e792fbbd822c223fa5ee697cf99c7efc9fcbebc119314d02df604 DIST consed-29-linux.tar.gz 36172715 SHA256 98354e2507ef9026b82c89db199ff1de7e4ec3686fccd691d215acdcde34ce39 SHA512 63a95d84cb58009045a9d898c8b1a94f98516bed9189f624a5930338cc8f51562504257f309d945fafcc07e0811ffeea122b640789f75fbd6c94535178dab4dd WHIRLPOOL 26ebc1ee7114b0c609fd36c2c46b71c399bacb61f7db285ab36f296902964c14518c058e814a166b20a36c2d320280aeed0ca18b7104c6b503324bf27d4b57af DIST consed-29-sources.tar.gz 3258845 SHA256 e7d3c2bf60e0bb22025e0416d16cf9864fec8091811ec285a39db4cb46bc3fc6 SHA512 fd711a65a02ef1238cca12b90fe7fa9b67da6c37d43cd105f38c7b6475fbc073c1f4d7f99703dec9d3a0a7a2a9317cb14999a114bb6f52589cb9b6e34700eb93 WHIRLPOOL 5ac363f049b6b40554112f830e812e7ab7d334a0f6707ea4da981ed1e468109f3bd7669382aa77e93cf12c78cc95fb1085711dcc972c7ff22ffe6b73056bb2c2 -EBUILD consed-29.ebuild 2701 SHA256 7470245178f4f819cc0f150a93bd69600be1419d1cc03568f4c8df812f03cffb SHA512 56d73a2d4ed207924c2a7676bfca84b8c0cc4f80d1a2a1b94fa2b3d644a6583f15e32ee81b9892122e051f17a1eda56d63ffb8d650283a9bee5c61bca6faf1d3 WHIRLPOOL 4ada9787bb4aee8fedff7c2d5f8fbf1797fb0f9a4b0d0e8c28a44c001b5c2cf2e95e2025342a1a63e0c63af0fc586b0dddd62ebe6c8b85d4e0a32dac1f31b92c -MISC ChangeLog 3099 SHA256 32a35743568e4401c24020f6c7987a1232d330d471a6ecbc94a914c88f899c4d SHA512 aee79f35f12c66eea2b4b2f8c263378a9677f4b38a73b80a2b6d52fe8506e7ca5378d20dc76bcce161928eda1a28473d73ec5d2e6fb124ad57fc5dcd534185a3 WHIRLPOOL c00113b1e85009fa1617952f210ebdb5355da651be99e980154430eb277436592c6fe89707f6a3c340c8ab5f63a3082301eeb6345500bdb38b1a2029575b8951 -MISC ChangeLog-2015 1550 SHA256 e110efe81735bbf632bf4a714561ab23dd49b8c03e0e34e0d062041e95ccd3f5 SHA512 f75dcb91ca84cdc363871da94fdb50369bc213f76e3d0e97ee2efbe352721e7994ffe53e92e96f326af5a552eb8edd1d895f839939be7e27f91e5cc5d230ae14 WHIRLPOOL a09fa21234435824b67947e0db03020e18fc6621ca9303478200849f5fe503369c7efb8fcfffcceec89998b971e49cb40ec92db40d6515fbc174eb3c45822c9f -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD consed-29.ebuild 2701 BLAKE2B 0eaed4ffca6daa9921ab782b00e34f207ff235e94ed2cff0147921c037667d30af200141b61ca91c9e386f5f9672566ba92e3dbeb8c2bef965f9ab72cbf2c27d SHA512 56d73a2d4ed207924c2a7676bfca84b8c0cc4f80d1a2a1b94fa2b3d644a6583f15e32ee81b9892122e051f17a1eda56d63ffb8d650283a9bee5c61bca6faf1d3 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/cufflinks/Manifest b/sci-biology/cufflinks/Manifest index 81152dbf720b..ce63d3b6963c 100644 --- a/sci-biology/cufflinks/Manifest +++ b/sci-biology/cufflinks/Manifest @@ -1,9 +1,7 @@ -AUX cufflinks-2.2.1-boost-1.65-tr1-removal.patch 344 SHA256 284c120453ec82ed194cdff6cd6344ac9fcf3dfba9c960483313be077241838e SHA512 774558e93cf57ca9e9361df2271119474c8726573ff4467af4836db863d87ff0f38fe7048c9287227f18d3541891bb7b433b5fa33567616eeecda2bb5b057e9a WHIRLPOOL a984c72436d307ecaf68efa5e6367d377912d616c4f35625df2471361a02ef2009d0f5d42355ac856852a3d30ecd390a1e9916bc67496df23637ebd5e6914afa -AUX cufflinks-2.2.1-flags.patch 1132 SHA256 3f86cd6ef757bc597bf4a511c119f176d4bb1bc06b3098791849446329f42a2e SHA512 58ea036d55d0b4835a56ea66afc2359bdb3e022f1fda3cab8402e4a2d7c6eab00fae96c739f89a25ca1e7528dad02f20c5c944a198c1eeca245e8995fbaa8f12 WHIRLPOOL 40db49fef766bf43508fc9748b31dce0098fc2cbd330106dd8156ccab39bbad5f5d15027fa126b6fe7eae082a10355319cca1b223e170d3ab99b8f587a8d935f -AUX cufflinks-2.2.1-gcc6.patch 344 SHA256 eb3df22fac5dc390ee72fcb2d1dd794d744acc08456a37d6343ead6348bc7786 SHA512 1e8fc2e717c464e39aecf2c434857e962a809fd2a9f84bfca2b7230d5150d464262b579f1a8c13970767e929562d04994d60002834c98c204e089d2d2a8381c0 WHIRLPOOL 3bb3f042c3f1d2e9c3c58a57ef7f519063241f6526dc4ac464a7668d8ad41aff19d4b7e1a945f45ce28bab886bf7081d13a95fe423458442146d2894361d8c8a -AUX cufflinks-2.2.1-samtools-legacy.patch 1105 SHA256 384370accab11dee8b3bfa6f31a6e506bf6b1f1c82906d4d72194f58dd69b453 SHA512 80c6eaadcfe6919d61b63efc83d3d618e939c3a1cd5e4977f936c41656a96c7c2dd71a1309d6b0422b1bf248a366643a62f011b30b37b4001efae5da04acaadf WHIRLPOOL af190cdf446331dffbdc9d247ed7574e855ccd0287b81d1e7c83c709eadd7fc60276dd5fdfed26f61cf52053a1ae444cf5d0c72b5b59bb8f9d3eb7799bbfbb3f +AUX cufflinks-2.2.1-boost-1.65-tr1-removal.patch 344 BLAKE2B af0287f43bfd37da352fc330e3f6e06d4c6946851c6d8760302078157c8073591ccf7b508e2debf35747837216cc15e952fd7128bca500547cc180061dc2f780 SHA512 774558e93cf57ca9e9361df2271119474c8726573ff4467af4836db863d87ff0f38fe7048c9287227f18d3541891bb7b433b5fa33567616eeecda2bb5b057e9a +AUX cufflinks-2.2.1-flags.patch 1132 BLAKE2B 675fb86a95425ed0def259b6f316e443eddb0c80a3a4f78e724f85ca3b14e58c29bb59bbc80a61ee7dcfaeb404383ffe0e58669dedc95224913c8d43939fd799 SHA512 58ea036d55d0b4835a56ea66afc2359bdb3e022f1fda3cab8402e4a2d7c6eab00fae96c739f89a25ca1e7528dad02f20c5c944a198c1eeca245e8995fbaa8f12 +AUX cufflinks-2.2.1-gcc6.patch 344 BLAKE2B 7534c9060e93f074718726e2cbf7df259ba298b447915a4162916977340d33e35a4fddbf3e1b662334b56d42ffb8e0a096c337b465b5952abe27d1248fd6d0f2 SHA512 1e8fc2e717c464e39aecf2c434857e962a809fd2a9f84bfca2b7230d5150d464262b579f1a8c13970767e929562d04994d60002834c98c204e089d2d2a8381c0 +AUX cufflinks-2.2.1-samtools-legacy.patch 1105 BLAKE2B ceeb2236456f30598e0d98ce1eaa4fae908286704fb6912a19ccc008b3d41476b853cacc3fc545450dde7d883593a545110a440c044118875041f56077c963b3 SHA512 80c6eaadcfe6919d61b63efc83d3d618e939c3a1cd5e4977f936c41656a96c7c2dd71a1309d6b0422b1bf248a366643a62f011b30b37b4001efae5da04acaadf DIST cufflinks-2.2.1.tar.gz 766280 SHA256 e8316b66177914f14b3a0c317e436d386a46c4c212ca1b2326f89f8a2e08d5ae SHA512 4da7f3a6090ea8cf469a85208c91073abdcd8b0e71c51b0f7052ce8001c368055b9d9cb7726d463196f5b3ab0b4a49bf5241d321ac3fe061225ecc47b4ca209b WHIRLPOOL bd40e6612f3c16466cf14efe706e38663c61d01661f901d9fdb140d0419e47e2ff10515dc7a0ff81da081e87af6d5d393d88cc4d036e8b921491fb5a790ae224 -EBUILD cufflinks-2.2.1-r2.ebuild 1187 SHA256 048bbaf1af91038ed6af53b08cd78bfd0c7856c3741205a48c7abcbda3e52646 SHA512 8894ed39cc003b86660453968ad4ba7013153e16ec22f7818dce541bcdfd241693139ad45996b8b42edce5412de1413f4ad0966bf5b04c5e9a39476458d14a82 WHIRLPOOL ba3d9678f81e1a13646e0461fa53946a86088902c38fb68fd7c74bdb57cada5a6f77bcd655025d57783f4370e0854828ca482e51e78b53e30f512795fc4acbe6 -MISC ChangeLog 3543 SHA256 39d8c4ff13a6022567504b432e48ba6aacb4a902831b958917fe2d2522d7adf9 SHA512 2cc7d3924bf6276b0e748203ad96af4fc70fd52a61f05bb12b38bbb61b09ac1d51834260e5240fb1079253ccd05099f326961b2e3c8907209d40d114fadc1a81 WHIRLPOOL d892bb756e9b707829b709330a67b3ef7c550d3c7bfa34b0ab7eac49cd6ce7dda103e74c464d3592832b91f9cb880160c99ec2e90e4f47aa09f1e8e3707a8aa4 -MISC ChangeLog-2015 2124 SHA256 a1c5876fc85bd35681d61a2f8679365f556de35dfec2e9605e18b0e0016fabef SHA512 ed23958452e90447dd9f58c8bb2ab65d367bd44cf74f09ea00840a40afb3ba1c97c2df888bde5e46c05ed96cce7e2a54bdce0d491928dd0c1d01a6872c88036b WHIRLPOOL 3d087552cc441da6d0ae23f1532e04a79e7aa8862088d74079fd823f26e66a806637a56f547b8f674d5a602d160c1ab51157772bd726f765e0373141154c437d -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD cufflinks-2.2.1-r2.ebuild 1187 BLAKE2B 6d688f33f3404055c9b0a52a442a1a9f5c0d25a77a55fbdcfad4b521a98c0be66eaa238f341745ec14a9207753547e2c1b24dfaf46e45a46aa6c6b94927cec55 SHA512 8894ed39cc003b86660453968ad4ba7013153e16ec22f7818dce541bcdfd241693139ad45996b8b42edce5412de1413f4ad0966bf5b04c5e9a39476458d14a82 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/cutg/Manifest b/sci-biology/cutg/Manifest index fd6ef56d4789..7919c7c91b70 100644 --- a/sci-biology/cutg/Manifest +++ b/sci-biology/cutg/Manifest @@ -1,5 +1,3 @@ DIST cutg-160.tar.xz 178015420 SHA256 faa2e5e4417e5cadd67bfff0c011f2f3e2e0c5d8b324fc441f9346808f6ed1fa SHA512 9b72283f311fb805b7b22f59f3ca8fed2ab0af72b82247900922999792c1b112dcaca9b29b265a1e0e7b9eaf9ff846a1dc4c196fb95ddbfb3ee5175755ffb8e7 WHIRLPOOL 540f9ba9f2f69718688531c85729c567cd6ba260f12d23b5f3c00d9689da93aefab588fe3dd926defacf4a21982406055ebee413e39ce53a2916e5e571037e93 -EBUILD cutg-160-r1.ebuild 1250 SHA256 59e602274fd15e923603bb7c4f0c8f1a09048b136773adffcd03c71d129958eb SHA512 4b7e71b255def1ece36d75ac85aa39e82b9e224317631801731fa0621e4841b00f6aa830e1fc43bb7e74fb387a2663c3848d9e0a5f99f550778448ab571ccacf WHIRLPOOL f3bded2d09f31650ff2c92b38a1dd91030c094ee29251d154d136d831413e88dd0a036b4b8f87fe2dbe9061cd584a310de0d80169327b4dcab51f05d919e6deb -MISC ChangeLog 2445 SHA256 d883f2b9bd991a0972e5739d3b89bb6dc47deeb4a3564c5fadae3c6a6054b732 SHA512 6dcbd245ade5394b4060b89833986d887e53d4d2fee8ac4f8f1dd705d900385922604a54ce45b4eabfe1997a2ac2b22a6cf08f52151f1b384372d13e2429ca35 WHIRLPOOL ae0770ac8aba3b6ca2701f2dbdc6593dd12b590d6dc6913455d1b6262d1545dafa9a8065b9cb534385fba353701ae258cbbb64d144094ef9a80df1d436562337 -MISC ChangeLog-2015 7744 SHA256 8723977349cf96250cecdefadb05bbe8270822b5baffbc477ca5a476792ce8fd SHA512 b365d6eb0563c1cdcd118e9efb1a1d12cec87fb6404f7161c9f43ecddc01523ec8dcfe0903887aca928893a32d5daa9987c15362892588b39dff4e14dff03673 WHIRLPOOL 178caf9920cb8f7b99c026196301bdaed6a42ffee61fec64d265b3aa752942adaa4d67877f62b7792ac63877aa9192cc892b27410311b1a221775c3cf397f75c -MISC metadata.xml 608 SHA256 215bb030a1c392e7e84bd43d2df7e8e2452223df44165544fbb88e97cecf8d76 SHA512 cf8142c4e77b18076f1916311ef85d9fac5d85c2b2139923c0bfb2ec5c8cae9d40d5f09c17128c531c850d726ba30f94b20c92415cb75f05e8f1d829f751d6eb WHIRLPOOL 3116cf5de61304c4a3034385a0cb3f20770026f400fa79dff9ed4a4030633fb876af51963dcddf4f9133070fdea9d2657fe355490664396cf0429baa0badc3b8 +EBUILD cutg-160-r1.ebuild 1250 BLAKE2B d973e58297166a5200efa01d08cc1053d6932e44e686b57d8135914fe53e23e6a336e4cf1b851f3c587e6a39087ae9bfb6a24e5e539f3a8892d6a8248a85a927 SHA512 4b7e71b255def1ece36d75ac85aa39e82b9e224317631801731fa0621e4841b00f6aa830e1fc43bb7e74fb387a2663c3848d9e0a5f99f550778448ab571ccacf +MISC metadata.xml 601 BLAKE2B 57d7aecf5afa8d6254de9ac825e0792bcefea19b962204c62c98938d60e2aec4045dcf289b0eebfb36d8a97ddbc91f80e3329a4a87edd0659cd6afc3c976318a SHA512 ed9ad9f404db1bf7e0a1550c139f9486135313a21796d52fb468dc00557228de9433eb1bedc363e5e932eb460be696a22e4ac6fbbed0c877094ebebe13b294c0 diff --git a/sci-biology/cutg/metadata.xml b/sci-biology/cutg/metadata.xml index d91990ea170f..0f8a9b77b269 100644 --- a/sci-biology/cutg/metadata.xml +++ b/sci-biology/cutg/metadata.xml @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription> Codon usage tables maintained at the Kazusa DNA Research Institute. Codon usage in individual genes has been calculated using the nucleotide sequence data obtained from the GenBank Genetic Sequence diff --git a/sci-biology/dialign-tx/Manifest b/sci-biology/dialign-tx/Manifest index 4c873ae49621..86b323912d09 100644 --- a/sci-biology/dialign-tx/Manifest +++ b/sci-biology/dialign-tx/Manifest @@ -1,7 +1,5 @@ -AUX dialign-tx-1.0.2-implicits.patch 776 SHA256 c13bfae6c2ffa4a676fc92a1dbe7f82d08578e5f36add057d0ad84a955aa7ca5 SHA512 632da19c24834f011778e1be23a8b19f64da4e52386c99838393f678e927174bd8d3d9d175716e2651fcb884673123136166c401d3e687b882e5eaf69d597a1b WHIRLPOOL d5fd29ad957ffc734d4ef24811e3f131f86bfa2ffd4bd41da4353fd10f1a3a370e6ac531a943ded7fe908b89373e32e857d478e80453889e41aa1d102db272ea -AUX dialign-tx-1.0.2-modernize.patch 6149 SHA256 9556d6429018450214d2f49b0f148b380fde11575bcbc3f465e495fa130d9903 SHA512 cf1c1200500eb3e5f159468fe52536e8ffff60de21e09bb81e585270224ac4ce93d59fe80bd5a8212a4154ad90b23ec415be11b42792440c7fd53f75762d047a WHIRLPOOL 56d6ddaa0e2c62afdae05f11fcf8323bdb6b9b75a8e3a34c3e409395a8447de5c18e418dfae541fed2df7b045785ac81459f16ced912cfb0422839b2e2eda202 +AUX dialign-tx-1.0.2-implicits.patch 776 BLAKE2B e91b85b42d9e61d4895ff34f2a6d7e869cc32edc6a8e6aee0378a3083cd1d3d4e148f6b223d60a3456a5db0b07859cd63c8d624060b365d5b13a6d75fd98983d SHA512 632da19c24834f011778e1be23a8b19f64da4e52386c99838393f678e927174bd8d3d9d175716e2651fcb884673123136166c401d3e687b882e5eaf69d597a1b +AUX dialign-tx-1.0.2-modernize.patch 6149 BLAKE2B f6f3044b38d4652c2bc3aa63714beb42220ac00d0ecfe68b692b7af0f6dc1d29a8d053962d324e33bf32df2b92bd0fad40b5ec352ae837f6eaba1920f73d8d90 SHA512 cf1c1200500eb3e5f159468fe52536e8ffff60de21e09bb81e585270224ac4ce93d59fe80bd5a8212a4154ad90b23ec415be11b42792440c7fd53f75762d047a DIST DIALIGN-TX_1.0.2.tar.gz 1765296 SHA256 fb3940a48a12875332752a298f619f0da62593189cd257d28932463c7cebcb8f SHA512 ff43f1f2900bdd12b7a8ba382a4d6ad68e6c2e6d7ceb1a65f0e571bb891cc2dc2661fb6ce698aaabf0e20c14565b5927ae0076a7170c8611679f936851a00c43 WHIRLPOOL 70565aa507f23a4f79affd8bda64e1b2698680e2288718c7518bd1d3782ca51ab747f8860e5513e7b1d480efd065702cc407c8137e96c47c3aad28ecdd345277 -EBUILD dialign-tx-1.0.2-r1.ebuild 998 SHA256 83df32036d359ea01946b576ddb43a7dc0bd748387a410dcd8c147494ef9ac6b SHA512 7baa791bc863006cf66828bf3a08ec87afe03f72ba181280f5e26cf826a939bcc854bb94b40551f11a818006dae3a229db15f61b09f11438dece536e150b0ad0 WHIRLPOOL c140d4c566db4ae8b8375de58191031ee9d85d2ef3a1923df198d812c3782dc956c879dd6593653d4ce628e73aba90063fea28f676ccf55905b9366064160464 -MISC ChangeLog 2711 SHA256 ea9068d9b980f212b36e963cfb776cb7cf1aa819cb084833b92eff4a4d8f5b96 SHA512 f96f8e77c48085ab00ab16ef442db74808d5088b8626e08ad02ef2c292c9500fd2a9c8bfcd8c13bda264c36d5609e60afea0f9e270e9dcf685dd897362082bf9 WHIRLPOOL e3aff32f3dbe71b1e769bb251d761371d2d60ad39fc3523e36fadac6f378037e412aeae21a6e72ceec6e171a77cc51ad22a5370a6ec9137059d39d19926cac14 -MISC ChangeLog-2015 2455 SHA256 826243159ec72a293d7fdd92561bfa034991227eb8cff363a272dec0211c2986 SHA512 f36fbf5567d04ed9b3880480136a1524a562160d4cd8c6092c4df7a0ef05d3ddde9e483016dbc32f60ca2de5706f9bd2c0a77464c1ffe767d7f4a9e636533dd8 WHIRLPOOL 873a2d1aa9ff64633684ef3195909e92ef0a2d3d6ff4dcb4c1a828c4d0511eea82e93f03c5e660e4116e83135eaca59f369d88c0344831c871319ad8c2f1081f -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD dialign-tx-1.0.2-r1.ebuild 998 BLAKE2B 3f5bb90b5fb4729c351f7aea6475b849353e33dd6428b437e16b9dc1d884201d9a528c1ae551675f7a3acb48f0983a204bdac5cb1e892cdcf10a65b19d186ada SHA512 7baa791bc863006cf66828bf3a08ec87afe03f72ba181280f5e26cf826a939bcc854bb94b40551f11a818006dae3a229db15f61b09f11438dece536e150b0ad0 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/dialign2/Manifest b/sci-biology/dialign2/Manifest index 4a12bd78fd3a..96de932b44a0 100644 --- a/sci-biology/dialign2/Manifest +++ b/sci-biology/dialign2/Manifest @@ -1,5 +1,3 @@ DIST dialign-2.2.1-src.tar.gz 209015 SHA256 046361bb4ca6e4ab2ac5e634cfcd673f964a887006c09c1b8bd3310fac86f519 SHA512 eb51fbc8d81e384ac19e9cc957be233287a1d81a7f020d77ab16ee6943382bd4e81099c0c9028fcff130def62cdf19de59e9a9c08ea4cb67b9d8f1939eb3bc45 WHIRLPOOL a6c5cd25e8e1f3d3738ae0a7f9eaac2509a17400cc3492b9b0b5991c08df08b586c003bbaa3f92d22ae8dd13a66488e6acbbce0aca798cfd20938cb391a02f84 -EBUILD dialign2-2.2.1.ebuild 756 SHA256 047164b9db779d98c2a6fe56ed20b81a86afd50cb0a0fb13d407eddbdfef851c SHA512 ead9440fc5b4bbbed8ca6b6dd39ac57dfe8da4d2556c864ecddaf2b2f94589c95fd5fe82fc6ce45cab11eb8a197324b5cc89d38b0ca2c4f10741c3639799bbc3 WHIRLPOOL 465fedc6a149ac469e64536ac39a83aadbb9980dc9e608e693a9828d0422934eef5b4dd6e88a55a18eac44f7d5ee7fa4e0f6b73b04f75e7543533e7123e667f6 -MISC ChangeLog 2573 SHA256 94d2f159736a197045fc1107eaf8d604877170e26b6b7f98ffc2f0000e646801 SHA512 777987e0620df6e88903922d5effd3e2bdcef1eeb46c1964c822f6ca40dcfa9fbe9a15d93c6f721493758a30843b5875a13e2ca5c99a6287d30a0066c8f0a7fc WHIRLPOOL 6a2ba69021e4a9de14063110f216d1c51810fc36387c9bf7b415ed9217cfa002d8546956554e74f05eceeaeedb24251b954276e1ec98d8dbb3685d036fb44080 -MISC ChangeLog-2015 359 SHA256 220d67a6a3980c72c4ef6177914fa94dcfce221a1ca4e925e02e397dc011b0a0 SHA512 22198a94ce811e70ad61355695f0ba4008519fa58eb4a0c5527ecd160a164026c8e354f4c8cc874443f89992c755adcae3e1f8f765ea846725ef5cc739c5ebd4 WHIRLPOOL 8f10c9535551b5893469c5f92150cf85a083b23aa01346c2a9ab3680e4c0fb3fedc8887f725d254dcd42a54f715a5e9b98eb5f26ec4c6c8126625f5b740affe9 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD dialign2-2.2.1.ebuild 756 BLAKE2B 32e2636c7df60a877c1c1f84f9ec83d41f8a15d293b5a91808790b613ae5b0be4b09c562b4ed4be47cc5839a79259b05af66abc3056fc519d597b29e0e56db95 SHA512 ead9440fc5b4bbbed8ca6b6dd39ac57dfe8da4d2556c864ecddaf2b2f94589c95fd5fe82fc6ce45cab11eb8a197324b5cc89d38b0ca2c4f10741c3639799bbc3 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/diya/Manifest b/sci-biology/diya/Manifest index db33b6914d41..60770434e9bd 100644 --- a/sci-biology/diya/Manifest +++ b/sci-biology/diya/Manifest @@ -1,5 +1,3 @@ DIST diya-1.0-rc4.tar.gz 386706 SHA256 13f7dd4dd7f96143948587884954e337552d7491347c2c174e786824880590c7 SHA512 64a00cb7f07200882d0b97f58e6b7f26d08ab0eab43834c3d19ab08f61080f8edb4a63833095e876c72c087324d39b2c4334ed1d3aa0280b7efb6a7ab3e08007 WHIRLPOOL 3efaf61a7e4129f1d3766b768dbe188df1c41d3158f431280022f17a8899db63b4db9a9774e48b49807e211ce58f28d588ebbd3037c8af5967b72e8e18539ffa -EBUILD diya-1.0_rc4.ebuild 1217 SHA256 f28d4d1ba5ba5ac39499d7f80bf0caeb62b523a9ef08032518b8aaf96f7ef67e SHA512 b375b2561d04f7c74db215f5dc61d7f3dba395e2bc025b392c2d5201938a8f49481698a1d863d9b3f4a8094e6a2244afed21e088f2893f7dc2d51df88cb2c8ca WHIRLPOOL 40c2719cab47ee3a849d5abe5a268c85ab13b4170664d9680d3994c0dbf3d4fd30d290f80e06f28e696b538e99436cf88308b6b240b6d09f6225c288915f4530 -MISC ChangeLog 2425 SHA256 8b54243c2df9c3362f08b5782d3da481b5f90053929e3295bfc16b622820cfdb SHA512 563be1d116756c7d8045d74c2b0a7735b49fb99d59506a9e3f54fe726184a038da459a217e21070a2bd5bf9a1f1aff837aeafa64c71dba1c2d7f7607dbc1c287 WHIRLPOOL 8ab829049ada06b71e72a8235f6710c723fd95e607dd6e6210809de7a1406943926240920c1c37cbe692726f1731064ba862e4dbd021f943520cf2106ac811b8 -MISC ChangeLog-2015 589 SHA256 4a47d8a2e72f6a813afd872cccb1d18759a877121aadd30a2cee1fc3862cbb25 SHA512 4e8e6dff796f223c9413bac3af000aa10661534027bf0b9f138c0639753b5fb6a44f7caf9765b7129956953f0a7fcbe6d9ef313d5d8bc42bc51b692706cc4f94 WHIRLPOOL 84f18afb0e09994b8ed8bb7412be0c266cdd54037b58bdd54c13cd0a14b33fe1ae33b695c5622ed00e0008b7f7b04ef2f60583692381c904dde6fcf6c2fc648f -MISC metadata.xml 345 SHA256 b42d0688d640c57997ac54e7036a98160c0a6b97d319288384bf516af91d0a3a SHA512 e7ea850a7f00eddfaeca18fa71baafd495191919211aa4d5a2439e48e57a09a1e383b27b1f1bccd8b2533bc5028bd1ead4ab763a514ed6dda96ca3ff625d2657 WHIRLPOOL 4cfe990e8c4ce350aa5fa1c03b8b43f8631af7283c263c0f0ea413fb8015ab1a43e9cb481d039c0a09fa33d6a3d06a3c40ac22f73256e5f932d27e2e91c15f71 +EBUILD diya-1.0_rc4.ebuild 1217 BLAKE2B 014c091e406c0bf0b9a6544abdada049fd29914e72645cbeea820ee152d1eb5edf4137d35e79fd70e0e1ffdb542af78999a80138ec12b49a687764d25aa3a137 SHA512 b375b2561d04f7c74db215f5dc61d7f3dba395e2bc025b392c2d5201938a8f49481698a1d863d9b3f4a8094e6a2244afed21e088f2893f7dc2d51df88cb2c8ca +MISC metadata.xml 345 BLAKE2B 3f4217699268536e4a5ca038d3fda29296606f96b3bccdfce05fbde987c98f572603555bab4036274dd6a76745692db7f669a36764a80cd2ee1d851ee5221970 SHA512 e7ea850a7f00eddfaeca18fa71baafd495191919211aa4d5a2439e48e57a09a1e383b27b1f1bccd8b2533bc5028bd1ead4ab763a514ed6dda96ca3ff625d2657 diff --git a/sci-biology/elph/Manifest b/sci-biology/elph/Manifest index 127cef1fa218..db7a5080cfe3 100644 --- a/sci-biology/elph/Manifest +++ b/sci-biology/elph/Manifest @@ -1,6 +1,4 @@ -AUX elph-1.0.1-fix-build-system.patch 1303 SHA256 5f1212cfd7fac3d15c969eee62fe9423c5d609a29a75a9f8cd599236fb188ba8 SHA512 d39611f80cd2e67e94f3d1dd7eb1dfe59ac3b221956ab72f3951b5716825387e7d3ed04608e75abfc43ae2cbc53ace474e602ddbd93441c2da74f04516ba2ba5 WHIRLPOOL 86dace4f513f6f0b41621e58ac783224916bf84031bed1223bc43566217b3474153814a9e023b7b9812e7f3ea63ade97bef8ed4d7da201440d0e0fab78e8d654 +AUX elph-1.0.1-fix-build-system.patch 1303 BLAKE2B 66103bd295fddd45f90734a49a8b673efcd91234abb4355408bca284d1d498bb98a9392b8467117e4ae034780579573a2cf26c78bef245cea8d0dac01c759322 SHA512 d39611f80cd2e67e94f3d1dd7eb1dfe59ac3b221956ab72f3951b5716825387e7d3ed04608e75abfc43ae2cbc53ace474e602ddbd93441c2da74f04516ba2ba5 DIST ELPH-1.0.1.tar.gz 113476 SHA256 6d944401d2457d75815a34dbb5780f05df569eb1edfd00909b33c4c4c4ff40b9 SHA512 a76cdcdaa1dc406fb0f1204b6a40ffc9f4c0840611b960a3d4299d447446e5bbf941abe7f70cee38f69a64862e186133fd60c1aac18b4b58d86f2ed5c4dd7d72 WHIRLPOOL 598dc3f95c93e5e36bcd20de3c985c22d650462ab27df31af54ca5b5b50c0a60fcc47637a41c449bdf7e572cee097289916aca4f0de79b804854d233ff3e20ff -EBUILD elph-1.0.1-r1.ebuild 658 SHA256 2843414d1f6279497e5577d0dfb9c8c2d32d3238fbc8f75336d23174948ba176 SHA512 ae25927fb71058c7543083735082e025defb746ea89f633e0bfa99291507e3a59ccdb05f51924b62a393dbaa40e727e83e83dc6e88b3acbe8e368cd856bd4121 WHIRLPOOL 4a84c71f80348508d1c6b825467da7f3a5df8f09d2e749fa4bcac972645dafcae8d26d3678f0b65283b00f14c696ef9fcb9998f0c7d2cc07e052e1e9d44b84d5 -MISC ChangeLog 2531 SHA256 d80ad382c93ebf13e79e3e0a159157d34bc781e995b42be22e3b850bed8c8f98 SHA512 2042496398adafd39319f7867c612a820275b984f825eaaecc3723468defa3aa0fd2f29613095fe13a844120d994493a78e861b1197a087ecae43e58ca7fe7c2 WHIRLPOOL 321afb35bca0963738f488b39bc6eaed74f3727763c826eef2094463937fd94abb3b2140c5c9e1df110fce9cc8bff767a1e53e30b48ea5851e252fa401a3c80e -MISC ChangeLog-2015 2410 SHA256 8f02ff022a059a9636b9d5fccb171cceb654c973c343eaff4dc5bc853d5634e6 SHA512 238c2d7ff81cfae365e2488bc5cb617af65b2f539f53c3e60fc1084302b578df46066ef60496f6c33265d97d0df526ed50fc6dbb8444c15913a8247f089f28bc WHIRLPOOL 808a8e0b99fde5bc1a2434bbf705a758e64faa7bbc876ac019ff71e62d14f819c3374323b50a707dc63f1f77c3f035c4aa3dabf4011a38a4fc79c25f1969374a -MISC metadata.xml 617 SHA256 577bac45e9296a2f04abd14bc8849a994b15f133958ecf4247a371dff4e25187 SHA512 d1998f0590fd4c555dcea00c1865da9258ba2a98bf7a1779703aca47ae01523cad74866e90fa612d16193c3974226519d4f5768180a3ae0646af2eb9fcbd1c2c WHIRLPOOL 82ff4415edbf7177606a2931079c0e0b137c91d5ed514f2fbf137eb112c82368bc66defd419a7ae5aa3c450ce986f0a7acb26ed5e10b89a188548bec049db887 +EBUILD elph-1.0.1-r1.ebuild 658 BLAKE2B 420e613f10a35ff0b4963488dff3bfa14a5e352d14ad8be580f1079fd986fa0bc23f5eb41d6b7eab4f25674d2893bce2bde2c26cf886883be2f6fa53c07354a6 SHA512 ae25927fb71058c7543083735082e025defb746ea89f633e0bfa99291507e3a59ccdb05f51924b62a393dbaa40e727e83e83dc6e88b3acbe8e368cd856bd4121 +MISC metadata.xml 617 BLAKE2B 6fcacf692f6d9df71fbf8437b5b700d75021ce0d9349745c95e84f971815b5fe89894bc3de8b683363e8fddff08ceaabeac517602e4e8dff6f61bbd7e00f67a9 SHA512 d1998f0590fd4c555dcea00c1865da9258ba2a98bf7a1779703aca47ae01523cad74866e90fa612d16193c3974226519d4f5768180a3ae0646af2eb9fcbd1c2c diff --git a/sci-biology/embassy-cbstools/Manifest b/sci-biology/embassy-cbstools/Manifest index ad9e72cf33d4..b790ef05b0b2 100644 --- a/sci-biology/embassy-cbstools/Manifest +++ b/sci-biology/embassy-cbstools/Manifest @@ -1,6 +1,4 @@ -AUX embassy-cbstools-1.0.0.650_fix-build-system.patch 3167 SHA256 8b73cb6b96e5afb0baced7ac7259addfb67b684d3c3035fa195f800bb264f08c SHA512 0ec7317d719da5466f02813105184d44c18f5ec668e0cdc1e120324216070009da4e38ce34dffb320b438665926f4506437e60757c3103fb03a526c46ca042d8 WHIRLPOOL ce99924dd94eee2df05665c8760efa2f9f2d374c896c526a0383875028e750f950004e79959c257aeecf750265fbd6b996de05b6fda7aa3a338e6d43cdf1672f +AUX embassy-cbstools-1.0.0.650_fix-build-system.patch 3167 BLAKE2B f34ccb14802128cf315cb767d519a8440b9fc9bb8fe3bbcb02a310f25304cdf5109dc4625ad62aed2323c1b3d438a99549e625b8440b42bce0477689d6d3fc24 SHA512 0ec7317d719da5466f02813105184d44c18f5ec668e0cdc1e120324216070009da4e38ce34dffb320b438665926f4506437e60757c3103fb03a526c46ca042d8 DIST embassy-cbstools-1.0.0.660.tar.gz 452594 SHA256 adb97baa5c7c44c1451537c8cb608024322435d5a4a2693a063a501e42f7127c SHA512 8f16f726220a36f998d8a0f1d8aec9ec6b2db8160b15bed7bafc5a65d57a937bd91ee831ecabe2e9aaa8cecaa18d050f16439a276a882730fde3fa4937bec384 WHIRLPOOL 82813e295f5576d30d474eb9294c2c2c75c577abb59f57baae35cc8cceaccd5a9216f50be43d61523feea80ad6212c955a084bcd9f84da9b5802d050cdc4092a -EBUILD embassy-cbstools-1.0.0.660.ebuild 352 SHA256 04797dc5f89cdc030290c805d730a301ad72acdeb956a8e292abcb2b78a237e5 SHA512 f85c1ecdd7c16e13c8e1a08441b73a76f66ff770a3ca75eeb745f31b46aa5e2b74172f20de4b520e64e0ed167cf50b55d01ab78b760c9fbfde8ecee689f2703a WHIRLPOOL e41fadc600afcf81a49a4794f630d49bbbff49a6c5ab01c1a3453af074791e97f36b9d32b6cb5020a87c5055937431edf21b4e1d6cf70508aff33a9f94462308 -MISC ChangeLog 3712 SHA256 c3834418e0b0538c112851f6ccc138110748e0df3fa7f196a61c03508b862d1a SHA512 2f62c48e531025a873833d04af1585a19122b6648d0e6e3bb0db647043f48c76e04ed60562e2b877b51e9383884a75f4f218106fd19d7591f2c2a62c1cf8daf9 WHIRLPOOL 1b9a2e4a734599e52d586207e0c850747b450916dcd6774e9e1bb0550216a1a95a1b926feb60a076d001e9c751e77901fb5af0c5b41a089d1c2afb1d74246613 -MISC ChangeLog-2015 1799 SHA256 409f049c1e7d5031d8ddeeec23f2069e45b3e006a1098c24e07c2be2859bb212 SHA512 deb61b1a12f4790cab05ce0905cfb07e43648a9b38d914d10a4eeb6f5aadcc3a55b5a0291fe3df9bc5d2053a2ed838448d09d2b0bd6fdd62f714c0e62dc37f2b WHIRLPOOL 8e2256d7fcc4643b6108af8791f6ab7e362b97d89838954c596f0dbaf64a2dbd05c9c2e660f34372b88c8af33736ded26f91b111956797718e9d8c7a3aee24d2 -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-cbstools-1.0.0.660.ebuild 352 BLAKE2B e384b07b74042cefb1d5e2e3c646a4006850b6846997daa136a652b569efa8db98092cbf8a2b965a1add167306fcf4b10fe50b1772b75d50d893a95ba900056e SHA512 f85c1ecdd7c16e13c8e1a08441b73a76f66ff770a3ca75eeb745f31b46aa5e2b74172f20de4b520e64e0ed167cf50b55d01ab78b760c9fbfde8ecee689f2703a +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-clustalomega/Manifest b/sci-biology/embassy-clustalomega/Manifest index fd6bbeeca444..7d8cb82ec012 100644 --- a/sci-biology/embassy-clustalomega/Manifest +++ b/sci-biology/embassy-clustalomega/Manifest @@ -1,6 +1,4 @@ -AUX embassy-clustalomega-1.1.0_fix-build-system.patch 2860 SHA256 21b6a87a19f37745f76fe9c45837d9a5bab6420dafcb9f50aa3899b88b3cd322 SHA512 6b1c8a2915c9c48ec203bc131461b9acecc3948da79f36941e2fd97a22bf044a35ee717e0be0b13f46d8a6f81148c29faa1e048ed4066cf768dbc705141a772d WHIRLPOOL 00b3a809502d22dfe01a3f5b12db5a62914753b81aaa4d4450c9506a1afcef65c9fa58706da6ca367de077395226aeb5ecb341cc5cb448aa0373a00569c9a778 +AUX embassy-clustalomega-1.1.0_fix-build-system.patch 2860 BLAKE2B 0a88c8315e40df48d18ef2ca6b5d8e0c266720c852cbe8dac681ceb8802b4b7e6ba18cb1064be5a979b82c37f1a7b83ef445e84ac3dda143e7e2bd2b5f627d10 SHA512 6b1c8a2915c9c48ec203bc131461b9acecc3948da79f36941e2fd97a22bf044a35ee717e0be0b13f46d8a6f81148c29faa1e048ed4066cf768dbc705141a772d DIST embassy-clustalomega-1.1.0.660.tar.gz 618177 SHA256 98bcb7e561a6f0373ddf96c5d98c0f043da1cddb75dc94a1dca439c54b5a27b5 SHA512 fc16f9505e0300ae184e292fb1d96ce6b90eaf80298f847769466a84726d10ea58e3f4c14ed21a9e2c36d7fa533c7ad248b4995bf41c8abbd0fed1faf1fd4801 WHIRLPOOL f06e66144845b85cdc253571f126bdc9074d3efaad45c92c83bfc8abfc8a0a70b75435e2917f76519a53e94f8649805e99c88137bd04e59cc5c15dc6dabc6b54 -EBUILD embassy-clustalomega-1.1.0.660.ebuild 384 SHA256 65cae24f4b0267a64896197967e01222c4f70fa67e8907ae566625e4759ae170 SHA512 8504bb9294da8a76c23114476fc16a011c45380b5f0f243bcf5a3bc68db6fd71fb7156f450ee14f78ec7825f8ecd46f4b0a7d0764c3dfd7ba1a2939026b123a4 WHIRLPOOL 7775f060bc5590ab9ac9cd99f734b445ca5cef7e9c2b4862ac50b59954884b91c3d8a6b5ba0a287dcad4c8f31fbc331b317e85b6ba876da46fdb87a27f22ba54 -MISC ChangeLog 3469 SHA256 4c77683d03e44a19a3a917d792b3fbf57524d874cc0e9c39f67e14c1db309dca SHA512 9b11c405c970db09f55c466ac67b7961062a05ef3d3e3b85aed5b865eb4bcc8834a782ba0d7b48a753da980ba21519e3c3d980915a379951fd2d53ce31bb8a09 WHIRLPOOL 8a6734e22cfc7aca3ff914962cbb001212e1bf1b9676831838d3793f332f4813d3446e0c889e95a6979186400a921e8862a26ea0925a959ee2feb9736a031bdc -MISC ChangeLog-2015 799 SHA256 b9f70f99fb963c9ccf78c43e36ac262753b16438a4b1fb7589d83c5796c010fc SHA512 2bbe112471e0e8042f170d73ac947b0d202cbbc86cefb596c97046bd1fd0319d15f24c17b99a6f69f8e1c346d44fa71ce039e0aee5e6829a8dc9b5c66e767ca4 WHIRLPOOL 99fe0031d3a5b19e5dfc757bb06764a705f063d0a71461cd735b04e95680b40ea9bc8a85f24b48fce2feb0228b96e3980a6119c3831ccf02c1f28a9942d17871 -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-clustalomega-1.1.0.660.ebuild 384 BLAKE2B 5896e2a2c95a3c3c126437af70f13cd16ab286dbf600784600859a32fb8ae26c3f791712d114945dbdc8f6984f47c734b560c62df150e4a1a0b0da30f1820eab SHA512 8504bb9294da8a76c23114476fc16a011c45380b5f0f243bcf5a3bc68db6fd71fb7156f450ee14f78ec7825f8ecd46f4b0a7d0764c3dfd7ba1a2939026b123a4 +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-domainatrix/Manifest b/sci-biology/embassy-domainatrix/Manifest index fc4349289add..6d1367bbe312 100644 --- a/sci-biology/embassy-domainatrix/Manifest +++ b/sci-biology/embassy-domainatrix/Manifest @@ -1,6 +1,4 @@ -AUX embassy-domainatrix-0.1.650_fix-build-system.patch 2860 SHA256 e44b11ca5a40404db741838ce87a68c536723bb81b3729dc1ef021c050d59b7b SHA512 9c8dfdd2e6c7f8542a989118dad6c70159c55a7f56593800b9d1896fb717b0c28ea100f5884f3284823ad1e92da6e5fe307e798028475e29d353edfe52b62865 WHIRLPOOL b02d9f774e807bca06b4a16d1438a5970c412868309333f35b39db5c067821a30a37affc9b74b44c8dcd458969f9dc1aa4ad07835b9660020bf10f26ed421fd5 +AUX embassy-domainatrix-0.1.650_fix-build-system.patch 2860 BLAKE2B 6115c049eb2864641e73968e5b094cddf999f0c74fc44ccd64515ea945039903f0c556e1c3d990cbbc14f502078b61f04966a57a728d3aa38f9b9e4acaa363ec SHA512 9c8dfdd2e6c7f8542a989118dad6c70159c55a7f56593800b9d1896fb717b0c28ea100f5884f3284823ad1e92da6e5fe307e798028475e29d353edfe52b62865 DIST embassy-domainatrix-0.1.660.tar.gz 474066 SHA256 122cae02e529385eb98d51caa3a21b613545b5dbc763e17524afeab1f7d1cb18 SHA512 151e026445abb171a9141ae5576442307121646c66dc811320a6f73be1103203bf04d37b813e5c95ef0873be261cd474835f4dffd042f33f99d7dd4fda19be7b WHIRLPOOL 82689cbedec77da2c7eb62a78e4407e2153d9dc6e4c51608705bc4bfed3556516ca61619982a3fcb02cdf8e37eee68f87aeba9fec23d054b660dad15d81553c0 -EBUILD embassy-domainatrix-0.1.660.ebuild 345 SHA256 da2c8c3ae8e45af225e9b28ae00ca3112aac955ccd21a1d55b3e4dd1488fd691 SHA512 0438a817780278fb85fbd6ba9135725e5b6a850318f8b8e95a504b388e649f7a19fc8472145ced331193d64addbaa1603c3c89e0272872f8795a13cf44d0288f WHIRLPOOL 130580891b28786330c204a7132386b7fbc8dd578a28fb05c14399f5a76840804dcff9709d7f535ff5c08bc4772a27e07e1f13cf2bebf56c42b96dd65258de33 -MISC ChangeLog 3740 SHA256 355fa6e17b11140fbb3bddb902bd9a089b9852abddadcec48092136a5bfbc619 SHA512 dcd955932cf92a35a24fe3afb5e9c69472108aeb13bae65349e81b89b82ae8f46f90a00e8d4834ea71e6c1ce4cf1e4f3ca13f9ccfff73f74682cbc7319a780f4 WHIRLPOOL 887058d56ab82ab7565a4e87cbc5b3df6e5d23a10a4402bade4e14a2acb1f10adfd8f509e95b66c18e1f958999b87e814b2000d1dc132d9eb6080748b20b1c1f -MISC ChangeLog-2015 5803 SHA256 519cb6863e78ea24aef1f05084802a891f4eef60ae9394eb7fa2c59fcda781c4 SHA512 1c79388eca11496a9d09b96de8324d4fc7041e7ee08a7813d8b81f1fc7084c808b348f2ebb3d3e66aaa948c23546ebdb16122aa2beedd58db1a077c2b9a88d9c WHIRLPOOL 9baf95d3dfe1d5abdc100a4a772f17e193374f493e3a0bbac20b54d499040814c5239694601ba91a9c043cbff7fbbd2ad07af3fe899a273edefefbb9ac9826c3 -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-domainatrix-0.1.660.ebuild 345 BLAKE2B b56c17ed3121410664d7f7bbd55b9ff09229962c300922dd6c3b72bc21017b23c2477d8dce4fe87e63ed393a43a16fd35cdb42adc708504c8db7a2ce9607e7f9 SHA512 0438a817780278fb85fbd6ba9135725e5b6a850318f8b8e95a504b388e649f7a19fc8472145ced331193d64addbaa1603c3c89e0272872f8795a13cf44d0288f +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-domalign/Manifest b/sci-biology/embassy-domalign/Manifest index 330ea4156ac7..1b55afa5ba4f 100644 --- a/sci-biology/embassy-domalign/Manifest +++ b/sci-biology/embassy-domalign/Manifest @@ -1,6 +1,4 @@ -AUX embassy-domalign-0.1.650_fix-build-system.patch 2908 SHA256 3c4b3c8187942d52b5605f83cb2430cebb050fb7d6180e2784a041a4fe332d48 SHA512 5cd02b39812adc44d9b877cca8902b6a66e79c90975b50233a4f8f84392026ffad25d57665e68e5db533f28935f444b4dc75b7120bafd910e415b75737686ad2 WHIRLPOOL 0a7ddde136f33cb2618957ddfc5f7d7d62f1352e4902b700d1b22c636b0424bdbca28fb6946d97095d75ba5ce61b21b93647c10920ebe8e4539fba5751efca32 +AUX embassy-domalign-0.1.650_fix-build-system.patch 2908 BLAKE2B eb0b7288b25a96d6b60ee75e8d022efbd5a3a72ac69c93e32a823316799215d8ea2db923620a0e32924e6961df20cfc939e4fa332d255208175d70977cdc0d14 SHA512 5cd02b39812adc44d9b877cca8902b6a66e79c90975b50233a4f8f84392026ffad25d57665e68e5db533f28935f444b4dc75b7120bafd910e415b75737686ad2 DIST embassy-domalign-0.1.660.tar.gz 498669 SHA256 df64428f965f3bf7636b649d60fbfc68450b6ff6981d1b971840b55ac7996509 SHA512 14e86664e9038acc60fbec92fa218e218921fb1e51cc2e482fb1760ccd9ea16041dc8a2a9f5f320fca3340b7efdc48ea9d753b048a43966fc3431acdaddc7846 WHIRLPOOL c7de34abbfaf407e3c4d5dc3582ad9a45adc4c7c91a7376e5cedaaa620711ffb315d647fbd813315d93edbbfed38b130ace7a5b3d016f638af64d02432c6db37 -EBUILD embassy-domalign-0.1.660.ebuild 343 SHA256 af35754f603a88b67066c06f5d740c70558110c4a2d8e46eea840243c11880bf SHA512 bdc0f0bf6a006d2091f98c3a3258e402b522a743866db74324333c5ec9d14df181561b0beb75baa6aaec130636e1e866184e5c4ed414ceb4e8365e13801df84c WHIRLPOOL 99c14523285090460bb9a0f5a0cc5a2486ea34588ec8109844427a868fa66eaf755b6ba8debf619aca90af867115025573330bcf52fd6af79b3dc03956e8417e -MISC ChangeLog 3713 SHA256 de038347386131ea00279d8e2ff4296cdc7584894e5314125f9836f396c11730 SHA512 9294affdf27cf379fa512089b072d3bd8ee3b26d96e7d2f8f53138a5f5a101bf7ab22f2f9cbb311bd8ff2163312f7c996f5612b04e86810a0e65b738dc569519 WHIRLPOOL 9a463e64b8885abef98b97691b8a9b1164d2e164676bf0611e310129de59f6c07ff8d9292fc925bc156e6a1de55548a6d9afd6f53b6669e50ce131abdf201fec -MISC ChangeLog-2015 3920 SHA256 2c6a86ba92e5d72702153e3133653d4b169c16f3fcbe1bbc53407f2e47f94567 SHA512 d72ddff0bf2c5cd0076c6814bbbe724bcd86e373faec3b8484226049b29e4477b6fd2256aac247a9828c7f88633a16d9c40da799c80e3d306f7595353581a373 WHIRLPOOL 03a28fea0444fc3c68b3dc37f94c98465d4b96a34e6bd7712ee32bf6b3e9a309af5a69749fe1cc77578814c39f94877de01e50d7ca6a2c14fb6e069858c53285 -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-domalign-0.1.660.ebuild 343 BLAKE2B eb2e7187c98b12fc74b1efdaf70d14d64c867db49aba11f4f07617bc727dd5223b011ef7b78981b638010e541f8c534d8886b7d7c4fcb9e40ba3b148a0e17441 SHA512 bdc0f0bf6a006d2091f98c3a3258e402b522a743866db74324333c5ec9d14df181561b0beb75baa6aaec130636e1e866184e5c4ed414ceb4e8365e13801df84c +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-domsearch/Manifest b/sci-biology/embassy-domsearch/Manifest index b57c08dbe610..bef6122742e8 100644 --- a/sci-biology/embassy-domsearch/Manifest +++ b/sci-biology/embassy-domsearch/Manifest @@ -1,6 +1,4 @@ -AUX embassy-domsearch-0.1.650_fix-build-system.patch 2890 SHA256 8b6901b6126ec5642c08ff114b2401d2b498b6912e2c58e0767156d775d0a166 SHA512 3f012a5646751b43ec66d006df04cbe8fa880d0acd62723962dbb0e1817c5f5db2bd4879c25cf932114aa43291bc70816afef6664088532222e11135f0ab5603 WHIRLPOOL 11cb26d3dcab609c43d404afaeca56f44439fe84bf4d25b05bdd98c4838e11d19753f2f3390af93c7d9b9141226e02804190cd8a8f0061dd7d67bd0e0d989644 +AUX embassy-domsearch-0.1.650_fix-build-system.patch 2890 BLAKE2B dfc956c10857a15a99ac57ca6d4986f43bd659903b71fb6e07b3a57fc0ed82f8303f33dcdc2584f4b5756a756a71b68d65cd4b24a984af3a76ec47789a95f673 SHA512 3f012a5646751b43ec66d006df04cbe8fa880d0acd62723962dbb0e1817c5f5db2bd4879c25cf932114aa43291bc70816afef6664088532222e11135f0ab5603 DIST embassy-domsearch-0.1.660.tar.gz 504183 SHA256 43c1d99723f42d0f79c4e9d11abaff084bed8262ec958f237a51465cd7afa168 SHA512 a242100dc7b4b1f4a838dbf65dffb0475b6b890c7d68efae6a74beb3d4784d031f92365a50a41c0d7ea7d1b4be5e65a298626a798970c74df0d5f85427a51589 WHIRLPOOL 02afa5cdf4d82b127317537c088b91592f6c4624769b7b13f030fd59590b533fb8ec62189b165bbf885d967069883f5e08f562e7187294468700ce9571a47111 -EBUILD embassy-domsearch-0.1.660.ebuild 341 SHA256 3e25fee23debf35e06c6e2c1a1f1d31f1913d7a2782165fb86d71f60da8111d1 SHA512 b7719faa5c0b7fd20379351f41930926cdea99e5c1b26e23aec3f7aceae12e1db885997782b2c4ca89e0bc5d92e17261e990d644ba04da36d9c219c0e5732afa WHIRLPOOL adc45d6d31b88003d7395fd1dd570b1f7ae90dd68015bb83d02431f8a929c54e51cc8681febff2b3b387ed20f26c3b7283627f1b0bcdf4ec3cfd06a903419103 -MISC ChangeLog 3722 SHA256 a46008601cf02935daa424c5201e812f1e86c00db5ff3325ff9853a7c16a10b7 SHA512 4116820109aa24ceca048ebe8875aff64095991a881d8d9026b86eb84736df6bc9b7e4d3015b32d6da2a5ea1baed072ff78a515246efc176e2f52dcbd71e72f7 WHIRLPOOL 22dbd4538aa426a57006b95a340f00e7a2e2b101d340e2bd3c4ab04f2ddf91e61e8139a7c243f7c63c4343a1a2fdb82e0e1fee0c0cacae15a261c86ced661dcd -MISC ChangeLog-2015 3869 SHA256 bd705086afad7fdfa6045c3d7fca59e2b3036b2d65d2a43585e1add5bb13cd58 SHA512 0914a10689fc1d3d6e44cdfe75158e275b56362a700aec1ba2ab7ceaf4e6e212d5881c7fa38ee774da39e5d858d44574ff625c2996b03d6843453703d298184c WHIRLPOOL 03fbac60078932d22105d1c3b113ab5acc1cb916da773efe0cd2fada41b1ef5d686c8208135168e327749a2102a7d9c77a01c21bd1d2360dc1e52185bd51746c -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-domsearch-0.1.660.ebuild 341 BLAKE2B ad203f06d1de9154b8c9603d1ad5e83ebc95f56c07f9a079b0edf38637b8dbae935efaef91aabdf411121cc5956f44a0027d2b8d9fc7784f3f2781bac339a88d SHA512 b7719faa5c0b7fd20379351f41930926cdea99e5c1b26e23aec3f7aceae12e1db885997782b2c4ca89e0bc5d92e17261e990d644ba04da36d9c219c0e5732afa +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-emnu/Manifest b/sci-biology/embassy-emnu/Manifest index 6bc01d894564..68e5bbdb8ffe 100644 --- a/sci-biology/embassy-emnu/Manifest +++ b/sci-biology/embassy-emnu/Manifest @@ -1,6 +1,4 @@ -AUX embassy-emnu-1.05.650_fix-build-system.patch 4072 SHA256 fe36162b0925c6b2746d6663c91853cbdf964c42ab950fb5613506518d1cac15 SHA512 644c4f0930a157ae9121354b49ddeb756b25d823d25733405fcc500d2080067f013443ba43a1512c6940fc4fd19cfe38c336dd0c58237354bad580cf9ba68b2e WHIRLPOOL 36dd5eab9ad368e471fbf799443a4a0d8132b89e31f670b030735f768684d4afe21577962c3ae0476f949c116a514425a16345edfb8172548df156b61b0cd1ff +AUX embassy-emnu-1.05.650_fix-build-system.patch 4072 BLAKE2B d256a82e214b8900eaab252e6695c4120eabb8379a59cfffe6a8b70e5decaf681af42ed9de3f9f74215a1a7f21e11367763aa705d7495eca41ab3fea1483e056 SHA512 644c4f0930a157ae9121354b49ddeb756b25d823d25733405fcc500d2080067f013443ba43a1512c6940fc4fd19cfe38c336dd0c58237354bad580cf9ba68b2e DIST embassy-emnu-1.05.660.tar.gz 425595 SHA256 0a5ae3a1fbaf7952ba5e28cf89bf9cbf521cea9fe4703170b532c50542c8ea0e SHA512 0cb0dafd53c4fd410409430dc12353989d2c226191acace26e81b457602b6b6c60f8eb1d0d9b36ea90b2420010c1a3e887a2458e8487008a36775961e378d0dd WHIRLPOOL ab62608ab9a1f433a0781c672c80daf6447f81e98159adc506e4a6fd22c7c6376fd6b5ae14f91aba5bdad76f66c3e0a9a89638cf2288f90aa70c36402c41cc6a -EBUILD embassy-emnu-1.05.660.ebuild 470 SHA256 b4d1cdbdb92f508690a3f20e6e9931022c9942460bf996f1fdeb4b07f9bf8103 SHA512 ec9df242ed5a421fdbc45b59c1a9a9a3cfe540bde2ea010a29ac56e758d26fa0f1a1c850de644e82486a574850b0702d7d87adebfd851cd40076e17596c88f05 WHIRLPOOL f040dee96571b9ebbb3d9c4c73873b9020acb657dba9e1c0492b90c7319f5aa3fe88db34bed269cecf6bfc3de07c3a9480b6c4487432e440eda3250ab3da483a -MISC ChangeLog 3890 SHA256 b80d3323420fe549f7f0de661fcd6fbd323999f4f5904cf19d511123b321230f SHA512 dfdb5b23e58614ecc42d9cd39e66b3113816d53dfc820a7ec5422bfea9c433a9fb89102e996e066f57a465b0f7accb43288986671da403fb3700032cd408d2cb WHIRLPOOL e28af714bc0a187135230cc876001549b6c181d92ecc1ab133ed3e6618cc4d75df4bc422631ffe324624d9a797c55b8564520158b3403c6514f086e0c42a5d5e -MISC ChangeLog-2015 5221 SHA256 c23b8feae038f5de8eb63d9f0f6c569b0acc03e25cebd2c9b5bfd4c7e45d0967 SHA512 34da4783348408202dbc240d9fdcbc370ac0385c1b41be4a73e9c565e25f84633b808525980edbdd47ec1a2f0f31cc03369d9208d340e4653de86cc8a90ab4c3 WHIRLPOOL 0047620191be27d41e3f7ed9d86b1e733b136379b8e263701b5fcc03f35fdd47bc511d26ca60b7e8b7b73aacd9b2bd0242875202cbc712a049189a87a9f8e8fb -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-emnu-1.05.660.ebuild 470 BLAKE2B 4a5fb352f30c729ded48ba438d978ff7ba85ee419eb1dbe94df07f34dd2b6fa50527615678c166cd627090bb2b15bd88d6d8ffd3d66e16006714d9a175444dec SHA512 ec9df242ed5a421fdbc45b59c1a9a9a3cfe540bde2ea010a29ac56e758d26fa0f1a1c850de644e82486a574850b0702d7d87adebfd851cd40076e17596c88f05 +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-esim4/Manifest b/sci-biology/embassy-esim4/Manifest index ed7c101c46c4..4f8b447ca615 100644 --- a/sci-biology/embassy-esim4/Manifest +++ b/sci-biology/embassy-esim4/Manifest @@ -1,6 +1,4 @@ -AUX embassy-esim4-1.0.0.650_fix-build-system.patch 3167 SHA256 25d191cabc62f3651e7f0cd999573b788827a2f3fb75e5c7be7716797c511577 SHA512 c8f4468998b1e91122e4ee5f355c5db451fa889892c05125edcc2f734051410251de85a9d7aaf5566dc802240d2925c709cfd448c8f96351aaa91c124eb1396f WHIRLPOOL 1558f5aca98ef8e6742c5990e7bb604d99ff80d6994147e01e2b1a3afc1c50e5efb56b9649d228da90bd955c83e3e12b65cfdc45c3bd50667de0c4236229be6b +AUX embassy-esim4-1.0.0.650_fix-build-system.patch 3167 BLAKE2B 23dc6aeb76d8396bb03e07abb9e3d6e00d982d050ea02156e43bc4388fdeb3a26a7af77d59c3ec358fe369cf40befae0f79c460c903110a7d71e4bf89512aed3 SHA512 c8f4468998b1e91122e4ee5f355c5db451fa889892c05125edcc2f734051410251de85a9d7aaf5566dc802240d2925c709cfd448c8f96351aaa91c124eb1396f DIST embassy-esim4-1.0.0.660.tar.gz 473261 SHA256 ce2f8a4e802da7e11ac3cbaf24406d9b33d4aa488f1c68bbbc8e969ec7e0b671 SHA512 623b241915217ffb314e3fc4ca6aed5e1683b78b6c76f899b67c4e5d48ce83c9920d79b1c5a1508d61856c332e614020d0804b7252c535d9622f9623f29cd152 WHIRLPOOL ea34bd05cc41f8e1e4af8eebfca9f1c0888c96f0dbb11df79c2cd8966b27d72f019c8ec3043ca7c9e276e015232476165a77336590ace448766a45163f654d62 -EBUILD embassy-esim4-1.0.0.660.ebuild 345 SHA256 894db7ee83fc1895dc4a40318eba1e1e456d310afabbaa5f8a73b31f8061fbfc SHA512 baff9c211e98de225f8644a441b99b4693f16068c151b5ee5b59c481e6de564e5cce0f0617bdb52a3d96b642a3b22dd558eab3329098d3ac028527818dc16357 WHIRLPOOL 10d85eeb74a687704d2f542f11be349932f60bc3ae3d9a89896584a9961404ffce8e1ade74dc14d202b0122f764cd0b45af8f50adc458a066a08e07c6418c799 -MISC ChangeLog 3694 SHA256 cd070895ae878ac17a3e6e434ba823e1e4a5ed6930be5e89e7be98bc16caf30a SHA512 61189ae9edf9e4e3c6795f43909217448921e9a384aec01e90700b29c3453718ea689e130dc42d4082c2b0f9173f769393d94b63fc09e7f356d4cf8f482d4cb4 WHIRLPOOL f5d96dfb32b04b068131b8c20c53a851f106803d1ba0d427bd5f452f1e726343fc8e47982f45ff87ea24d10bc86a3bdc827ea577008d0599444ab9dd345d245f -MISC ChangeLog-2015 5174 SHA256 97faf62dbc69f607804fe3204629293bd24a994c4ec0aa4fdcb437b5e427d180 SHA512 daa106d334327da2c13cbf74b4c4269e9fe2510ad1d1fcf67b7d9a90c51c972e608ad6434d531babe5af21cf18aa660d5cc779bcbcd6d9544b212e30846caae1 WHIRLPOOL 8a7780dfcf6a58321e586ba240eae5b0706d96244ba351e05be0a62ea87b2599758b68bd459264cb03e4d0502e555e93597ff0811e6b7420d52e8769be466e3c -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-esim4-1.0.0.660.ebuild 345 BLAKE2B 9b4041be06278cdc5afee7b710ab21eaa048975f7e2a496547171da92a621e55e0d731c210b60d1a661857fe7de2719a58d1cad42134277adfbf0fdc16f37471 SHA512 baff9c211e98de225f8644a441b99b4693f16068c151b5ee5b59c481e6de564e5cce0f0617bdb52a3d96b642a3b22dd558eab3329098d3ac028527818dc16357 +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-hmmer/Manifest b/sci-biology/embassy-hmmer/Manifest index 3e16dd3c9ae4..059ceb1881e4 100644 --- a/sci-biology/embassy-hmmer/Manifest +++ b/sci-biology/embassy-hmmer/Manifest @@ -1,7 +1,5 @@ -AUX embassy-hmmer-2.3.2.650_fix-build-system.patch 2860 SHA256 6d05b00b1fa6946594cb3e5dea4e3d1652decab49bcb5313801d8ed4a33e51ac SHA512 f215e5c338aa1f0bf791de223f3ee9a13622f70e142c5ad4812dfe171f7d602aab750e1dfe4233324752adc645abf289e63d8981b8497787c785c07de64c7944 WHIRLPOOL 19d3b640de27436d40b95c451c0d39458b1f4a69eed7cb536e7417606d792dea91c677e719cde5b82873060549f36794ec6f36ba71a7549d619fe7f645d8fa62 -AUX embassy-hmmer-2.3.2.660-slotted-hmmer2.patch 3392 SHA256 d2ccf44c1f012300b7578553d697a950714c0eb93cf630799d16b662951f73da SHA512 18d1595b7cd6091917f9657310b286d2f0d1f6a61c045840b1c551b66162142997b837cc50b47a3a5fa7efec4ffa78e5b9b52804e3c4d41efeed9b4edb6e5507 WHIRLPOOL 7e1894fc952af1ffca66785790c94851b1dbdb6bb9530f18abef2862adbde171a731ab4d61f60dc2add66a7638dde778a3effc078047b8d9a39e70be2686b0c7 +AUX embassy-hmmer-2.3.2.650_fix-build-system.patch 2860 BLAKE2B cc3075caddedd8c50836b46943caaddecaedc517d93da7d9777f8c6dad97442f185f51e2c755173038c90dcb10097cc4b105ae812e54826552444d5b46374155 SHA512 f215e5c338aa1f0bf791de223f3ee9a13622f70e142c5ad4812dfe171f7d602aab750e1dfe4233324752adc645abf289e63d8981b8497787c785c07de64c7944 +AUX embassy-hmmer-2.3.2.660-slotted-hmmer2.patch 3392 BLAKE2B 56da7becf8da8195016cb98518a19fc34394d98400dca6bb499d43c57172ed76ec81d5a9216b4a1b5e67b33520431ce87ed1327db99f3f924a36d80ff8c9e0c3 SHA512 18d1595b7cd6091917f9657310b286d2f0d1f6a61c045840b1c551b66162142997b837cc50b47a3a5fa7efec4ffa78e5b9b52804e3c4d41efeed9b4edb6e5507 DIST embassy-hmmer-2.3.2.660.tar.gz 587775 SHA256 1464ff5e87c7c429f2fc78ac3554f8bd32cdaf49b8bed095fce6268b9afd4f6a SHA512 eb2c037fec70f4113b9ab59cc4eca9a608e8d0971a7bcc4612d60b1e28556444dd3ecdea4ff7b8f8b34711ad9f655334857e7510e89060459c81994a3abcc02a WHIRLPOOL 59027e96d3e629eb771fa966be95cd30138d6b97223056c95c1cc19d21ec0ffe555ff12f2cadc372ea303a0e06a9c1e673c4e32b2a50d8fd2ab2071d2c04cb83 -EBUILD embassy-hmmer-2.3.2.660.ebuild 501 SHA256 7750aa84f23f0fb4748984397ae166c2677ab167749526bf26ff0e21f7c548b1 SHA512 bee21c5e7950f2f11be84c0287010630754681d840fc7393f9fc8e0c05fd14169e03f37a6d99bc4dfb28dae5b9f78a9f509a163cee6722796a3300b0cdab0651 WHIRLPOOL e2682a83bfa88731f25b9789a181e0c3c4207b183f1c4f73e16ba26a2a95395fc780c3149d46541eed1b2991ed553b44ba6bd71bbd807b6d6c00c1afd3bba5f7 -MISC ChangeLog 3694 SHA256 6632a1ac5d0fba8f1e0e9fe844e366120f360bb50ee7fcc48921f1c43d272a7c SHA512 2ec9e47acbd20102d2041c75376ef8b65781bd8593a9d5d3a866a9981e97bac5ecc32ad5b8272dea4db9a1106c94db35515169e5ca9c890459c2a4829d0953fc WHIRLPOOL 783eb072d06f81c664d86f20fa2165190310f9714b82bbb5b1eb72cdae7096c26dee4104ae7f5098671e82693fc098c961dded8826d34cf50148ae650271c2a4 -MISC ChangeLog-2015 5450 SHA256 f37958058bb7d3d532c9970a9aaa2f146fd9da610aa362e8e697b6aa4811150c SHA512 ff79da3b23f057604319a93af4e3b50b72d293abf6d4441aacac3e0074fc8fd4ce9027cfe26529c0555238bb5091fe75d2c4f24d7f1cf8ee8feea4438bf1eda9 WHIRLPOOL 2a9bfb84467181d90356468d17387a8fb21cabdf0c533239e1152ec61d34b3454d5097678e794303e479419282efc1bb005af03ef2dd4d59e70da7b751f025cc -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-hmmer-2.3.2.660.ebuild 501 BLAKE2B 3890181b25b9f6ca7793f05765f47723d6c040478af2f197f0ef9ebedd594d293224cf4878fd1e8a0850781252abc54537804116fcf625f38d35439e2cf8020d SHA512 bee21c5e7950f2f11be84c0287010630754681d840fc7393f9fc8e0c05fd14169e03f37a6d99bc4dfb28dae5b9f78a9f509a163cee6722796a3300b0cdab0651 +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-iprscan/Manifest b/sci-biology/embassy-iprscan/Manifest index fa29a4858056..519854965295 100644 --- a/sci-biology/embassy-iprscan/Manifest +++ b/sci-biology/embassy-iprscan/Manifest @@ -1,6 +1,4 @@ -AUX embassy-iprscan-4.3.1.650_fix-build-system.patch 3167 SHA256 4ee85226fda51d4232bbce8c8f1f3d9b6deedb794864bb16c13eee514ad49b09 SHA512 b2b28377e60790db744f32eb5cd4de5b7e15129b603e21013eeeebaea5c06e6867937b6441f3d8e788effdbb58c57b8841880aa7d4b4eae2b0b83dc72242f4d8 WHIRLPOOL f7e9084619cc6b0b1e8425753e5f44ab41b22d309afe10e3a01eab67eb76258cebe3b6ecad340d247f6ca51bff0a1fac4f2125a8f8be5e30466b50fdee3ee494 +AUX embassy-iprscan-4.3.1.650_fix-build-system.patch 3167 BLAKE2B ef1f3263072850667744e2064929b2cd38620046f1cd2c6ec5c4bed135554cdb7e36d8b58363031051fbb98f294dc9f6c77bc7ac81ff14110baca368e51b8407 SHA512 b2b28377e60790db744f32eb5cd4de5b7e15129b603e21013eeeebaea5c06e6867937b6441f3d8e788effdbb58c57b8841880aa7d4b4eae2b0b83dc72242f4d8 DIST embassy-iprscan-4.3.1.660.tar.gz 406720 SHA256 9534de155a4efd765a588f567b9b502052360719278e492b1c0dd9e50aa78013 SHA512 eed75693557f141331dfb6bec6961a8f6eab93780cad3b629d547b8635be2df6ec85e5ae0e9646d174a562a0f6d31c3c487a4dacac9efdd393a7144cd5716878 WHIRLPOOL 25b3ac80d0f5e7bb3e4ffe21fcd2657894f23ca4f7e182d527d97b5b869e11206e2ab4f265fca027e419ef7fdd2752b3d11c8ef9518edb72b93dddff4d7dcfc8 -EBUILD embassy-iprscan-4.3.1.660.ebuild 363 SHA256 38f3fe16d5752340814d336e4c2152d3fb7e116ca2e1d889145af9754768726d SHA512 3b140b4b5f4e25d6935b4f159cf636d76dd5437c97fa3c4d0293287db5e1e52cda7db29eb4a0cd4b34aa9596da791725a51a653af27be52cdfbfb76c6ba1c1f6 WHIRLPOOL e80ec1b503269314457ea219e256061cace3775b3fc6293f33bb527932356d4bbc0445f9551b00f420b1c053a8bb99bd54d6d933c5f64a7219c1693f57fde9a1 -MISC ChangeLog 3703 SHA256 0e8e02ef4ddbf82293585913d79f0f614cccd638cd177b915f07ff93b3620d0b SHA512 a184d73c14b908ff8acfde1cf9592a8420682daec138c278fe3c7ead6fab9223028aa29a784471b40912414689f60e5b3d401d2cd6d8d2a5b55a82c77957ac40 WHIRLPOOL 8953578b043bc0f80b039529337eac4f0beb08bf915fcc7e92efa142fd20aa6e8972bff943435928a36939adbd1feef4cbdf419494ae998e9534676be388616f -MISC ChangeLog-2015 1781 SHA256 015954d5dfc1ad4daa5ba6b0f4492b754cae024770b6a03fd1d4c55ae280a24a SHA512 2022d1f98a55d9f57600c6a9f7fef6bfc8a15678bce2b3d6b3531be7c532ae31f27e0b7626b180b39e5eca29cb581973eab307666c7819fead2b3f8047ba45ce WHIRLPOOL 42f145f36c3be160be823dc14c7ccd4ea831c569000064306a73b5cd87b367520545e16c1d0954ea0a379a32b9cc968625d33fc510e49a30ff49321a07e2dd1f -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-iprscan-4.3.1.660.ebuild 363 BLAKE2B ca438f24229f607365742c8a1dd9d0fc72ad44a374b7ef6c4446684dfb3a7229bd3b9ca85bbe396fe247a7ea6f9d7b9ea32753f51bdd74919ad718a019e760a3 SHA512 3b140b4b5f4e25d6935b4f159cf636d76dd5437c97fa3c4d0293287db5e1e52cda7db29eb4a0cd4b34aa9596da791725a51a653af27be52cdfbfb76c6ba1c1f6 +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-meme/Manifest b/sci-biology/embassy-meme/Manifest index 5021cd8b5caa..104b11065c41 100644 --- a/sci-biology/embassy-meme/Manifest +++ b/sci-biology/embassy-meme/Manifest @@ -1,6 +1,4 @@ -AUX embassy-meme-4.7.650_fix-build-system.patch 2860 SHA256 928eb90afbc7b70f69fd4bb7f1090bbd4ea2bd3d7a286b56c947dd481156b5b6 SHA512 c44b219c75e67d17fcfd56145ae3709053bda38b8690141d1e9b846e4e4a9cab135f0dc9c5399e4712cf030ad562dd075f45c393e78157a2c1b92d80903b3d1c WHIRLPOOL 4e93c672ee6026ee7b2e2ff6c8771a375049629f5e24e2e6cf9afa72cced5fc62d21f49c161fb5ffe55f0637ffe14baf78df15c1c95e0a42d3495a1619365141 +AUX embassy-meme-4.7.650_fix-build-system.patch 2860 BLAKE2B 4b6d608d6fde975acd09373b39c64449585cd5f76e323fdd07c9ee9f741cf0f679a143bdd8ef110a0d93b70451425cf021b763860ef376b03c13f8a9456f8e62 SHA512 c44b219c75e67d17fcfd56145ae3709053bda38b8690141d1e9b846e4e4a9cab135f0dc9c5399e4712cf030ad562dd075f45c393e78157a2c1b92d80903b3d1c DIST embassy-meme-4.7.660.tar.gz 622448 SHA256 a9ce0af5f8e05d82cf7678c9781041520bb9889a5706e38480940003ef2a9e8f SHA512 0536531b198aac09a9fe6c17cf1c60c766789c94a7f83f743a90aaa65061c95534bf398c53611a34549b7ec1a4928fdc45fe0d2553f25f85eeda41f90c2e8c6f WHIRLPOOL 041fec3789c86375edb64b34a0190484cda6a59aab564c5deee19930a8cec0455ed9689d726cb647cca30e7c3c59f728aff5546ab8ad491aed4f331e76497b51 -EBUILD embassy-meme-4.7.660.ebuild 381 SHA256 a89b8707e8bb0bf2f7d291d9223c97553b15ee50dd8cde2932bbcab0afface8b SHA512 b31045a88106d64ddbdd91cb85d06328b99b57eb490aa9f74f9cbf2464e3ed6485ca5e54ebd8146df8aacf0d44ee8f6f1d68cbb7a9e9dd3f2f46d637e2a8404b WHIRLPOOL dc87425fad3902502e290f228885500a6cba050a235a54f4831d138609a3d3c72fdd65e26e7b830bed4e146fbfc0317a5ace53f448f3c7718133fd0fae4a487f -MISC ChangeLog 3427 SHA256 bda42da0f155e2b202a1ac73eb0c3201d0721f1bb00ea253971ef2bf3fc2a4b3 SHA512 04340e39cd3f9676a9cac7b9137a1b62b83dfd1f9e5dc6cbfc01a5dde8d061c05ae242151b60364b5639254a6a4fd8b689ca822dd2659d9927600caaaa049b42 WHIRLPOOL db9cf3c9002291ec6679c0c9a2e05dba1ac5f883faecb4380b673874723bdb6e34f0c608db65a62cb0a1ad6fa460c9cf2dadd2f79ca2f765acceb95a224178f7 -MISC ChangeLog-2015 750 SHA256 dd4f3a12304e509ea4abd9caa5a5e1b68b2bc1df56b9c3cd26233de0531fea4a SHA512 0b079723cd9c0a825cae54d654e4ccc7f051242ec7eb399de0265e2ce43960b57d7854825535a2300a0b96ac70d735b6d23fe086a13192108b14addd4f3605c0 WHIRLPOOL af77519eb83320b982ed520d1d2b7a81edf88d4971a731c8964bca1080c2c4a9b4202a1f16addd68bca4893699a08b4419bc504fb34a4e0552d809646f272bd9 -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-meme-4.7.660.ebuild 381 BLAKE2B 05a00fd0ca6d8e16bf61fe932f1e9805bac024fbd5bbee7bb4a37e2b3aaa3e394f5d9b8a9d208c127833c25b3de749abf27d849fe2bf0ab22557d565e3ce923f SHA512 b31045a88106d64ddbdd91cb85d06328b99b57eb490aa9f74f9cbf2464e3ed6485ca5e54ebd8146df8aacf0d44ee8f6f1d68cbb7a9e9dd3f2f46d637e2a8404b +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-mse/Manifest b/sci-biology/embassy-mse/Manifest index d64545ddc9c6..cac215dc7c52 100644 --- a/sci-biology/embassy-mse/Manifest +++ b/sci-biology/embassy-mse/Manifest @@ -1,6 +1,4 @@ -AUX embassy-mse-3.0.0.650_fix-build-system.patch 4274 SHA256 599b095e98864d4268b5959517c1002b3b591a45d865e42f409eb0059af5168b SHA512 bfb4663a4b38928f765813cc9b5e773ca712c2333c1650d9c78f457307aa450684f77a20c0a087d3795d5b51f059c6f8113e74da35aa78753c1cc666ba583f4b WHIRLPOOL 418dc60bb9cf2023d499eec13b132f1aaab7bd9538ba2bc12f3f19926a25f7e7f0fb3b9b99e80acddfb57a4762aba5c90e413ffe5c8aa05d593d1309ecc28db8 +AUX embassy-mse-3.0.0.650_fix-build-system.patch 4274 BLAKE2B 20674fb79ff55fe7e73f0dc5c62bbe6acec81cb314260a6b879b0881b9f0848204d82301675c5829ef236050af3e4f5d2c31e6cd3a0c2f9554da1408951deb4c SHA512 bfb4663a4b38928f765813cc9b5e773ca712c2333c1650d9c78f457307aa450684f77a20c0a087d3795d5b51f059c6f8113e74da35aa78753c1cc666ba583f4b DIST embassy-mse-3.0.0.660.tar.gz 491747 SHA256 2744c2a447cc16d7ad4d9049c61793fc2803659b83b0666b3ca9c30648dac88c SHA512 4ae34de71566464e4352ff7b3bbd19b8bf0571013f34253495cf5cc57240bac9c75192c302eb0231763db1745a7e3e79ebcdcb006e36ea4621a886b213eb96d3 WHIRLPOOL 8d257e79161d5989ac2fe3fe5e55e073402b57795121693fd43ac0d2d348032abb7927d4e40faf2b4db182145f9bcdcc7ba5d7b0534df10dd844c256b8dacb9b -EBUILD embassy-mse-3.0.0.660.ebuild 563 SHA256 95486ba509879ea87d6f2a7a97987b22857881181cb3fa0046299a45cc4bf20a SHA512 80cc7b8c36d5675f8f4caf9fb244ce1b2740bef6813c4f62e4084a07f31d173abc0fbc4b486e7fda12b701ffe9d99efb023e76fdceaf29c87c2b5182ea1609f9 WHIRLPOOL 422b7ce3a899e1260da66c78c5e763e986e438a9b9ae3ece5cd23cd5df516f395ebd0971563f505189d9a2a5d0cf03db03442c7ce8d05e1e083a0d197ab8a86a -MISC ChangeLog 3557 SHA256 63d5d3e0ceb7785312a8ac18c6b3a6e7fd4569f0dbf7f9192d1684f403428e57 SHA512 ebad0d05b2493db898c50a6e1d268313da3d60705159dff3cef1f388d6a249bd7cb9e7c9e7a0639d99969316eb680a9d10be21935bc067bc70f758b6627d1671 WHIRLPOOL d4dd277affb7666a0380d0e3890c88a8f25725bb92fcc6bd81b0b866bc5234530cd6d3759732cf41014e6ea7a82fca160b7e4f2fd5190ac6aa60c8e924b2725e -MISC ChangeLog-2015 6196 SHA256 33d5a20ceaea1924c0fc21af8053c9e4fd1385a6b352c4224c9ec6de563041ba SHA512 29895c8f1db31e3fb946dfbf95ba737530fd9eeecca7cab5713075f06cc0a4c3e647df72369cefc3023a8ef36f2aeaa2677158431e44239d8517fa7257403281 WHIRLPOOL c520584027ef2ffef27609a3388c995c90160a90c9039f5d88414e9a5c46c85c24fb3bd9f4af24e694de1320d05d065fd2d08108344be05aa2c8de965cc38471 -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-mse-3.0.0.660.ebuild 563 BLAKE2B beadaceac77c0402dd51af2658269a89c80924dbea394b6fa5c3717f655eef6ee2c9a6e28fd10342c0cd1e59e1d08cef54f16dbacc769106084bf1afbc199db8 SHA512 80cc7b8c36d5675f8f4caf9fb244ce1b2740bef6813c4f62e4084a07f31d173abc0fbc4b486e7fda12b701ffe9d99efb023e76fdceaf29c87c2b5182ea1609f9 +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-phylipnew/Manifest b/sci-biology/embassy-phylipnew/Manifest index 49cbaae159f1..53378d067de1 100644 --- a/sci-biology/embassy-phylipnew/Manifest +++ b/sci-biology/embassy-phylipnew/Manifest @@ -1,6 +1,4 @@ -AUX embassy-phylipnew-3.69.650_fix-build-system.patch 3255 SHA256 26aad2bc72f89444dffdd301cfd4f50ba582b10082f21153e601c6812075ba86 SHA512 a0d4dcb3e7d4ce9b5cbd68168ebe7c8d248aa1166a6a52a0a77031291af8d2d32af0243571b669b9318426f753251d983ebb9b96eb1da81b594f4f4d20d7c249 WHIRLPOOL de7d91731115bca913a65a8f4a44d863433338ea4e5acb7f6a9fefca9a185325b18888d8339d180a49ecb7dfeb91f120a7c7188fe23f340dd21aeb8b3940458e +AUX embassy-phylipnew-3.69.650_fix-build-system.patch 3255 BLAKE2B 9dfa7b3fb97508e7807b5b3d3ddfa48b1bb78cff3b8e658a0ca786e3c472f997267252c39bde9bbea4311f7b2192c2a0553617a7991e43aca3aa66db289dec41 SHA512 a0d4dcb3e7d4ce9b5cbd68168ebe7c8d248aa1166a6a52a0a77031291af8d2d32af0243571b669b9318426f753251d983ebb9b96eb1da81b594f4f4d20d7c249 DIST embassy-phylipnew-3.69.660.tar.gz 1741298 SHA256 af385d01826e67e05295955f05721728abbd4feb9e11a944189414da6590bfeb SHA512 b41a31285e05a418e4fbfae7241c3658fe458e3d5d84bff472d98b7c145340a55bee1d744b5c056d0e88407074947b5f37b2182c9cb800c8a8d43dfa76d026d5 WHIRLPOOL 94cbe384a1575c322c7e3cdba7ccdb79e3e24cec7bd24776872f3e7d425d85c64fdcdc1cae6c079b40ca943b84a039ba2c7c5c059c40ceaf95c5c2e11e4a3e58 -EBUILD embassy-phylipnew-3.69.660.ebuild 360 SHA256 f709676a2f9165b6fc0463fa866887b346306b71b99659ab8888922a29395e16 SHA512 cadc029f641b4303325f4d4110a130bc46b1e74b2c6246bb31cc07ff2bd8801adc6438cf2253897d3d6c28bf4fd6f9bad098b73d0e664b79bec5899157551e12 WHIRLPOOL ad40e021462a8ee0ada38eae9d4be237ea154889b20d584f498a5b8fe96575f434f62fa298f4b985422bfa7c152b929c8781ac1db9acdb26e1b91d5bb116270f -MISC ChangeLog 3713 SHA256 16e0941c89aebf00fe14bd00989a743873ac62b951e97cb76f0351d92b87899a SHA512 5184a0b1a6f8e989c0eece6b2b1dcfcfd7c4ef0bcddf9cb25eab69d7eef104c0807b72390d29e5f7ab909a3c9fb224af24f649b3d28f711b1aa4e20f2ece08a7 WHIRLPOOL 0958d0036cbf66b26b46fc41287c62f56c3499b2d66d7fd174ee30ac7a9088c9afec662803c41626fd4ab87101d58b7a57da78e27f3e771234ccb5b9a7ceceee -MISC ChangeLog-2015 2806 SHA256 142f97be3bcc2cfe360418a11835c21109505aa7085b705e93832b586ce957f9 SHA512 5d9859ac63566d082fb58bb3eb6ca81fce1bcdab06624e7795dcec6f28564c33c87f7b62a642e153c1a1f161cb995ad52b04cf2fed8029d3e5afdd28948135f6 WHIRLPOOL ad62b40aca5b1d875cb26944dcbcbc7f288024e298c3c0d1868e1a72074995bfa3b0ab40c8e7e6686bab57c11e85c013e4826d474a178803e65d6fe0172d0dd4 -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-phylipnew-3.69.660.ebuild 360 BLAKE2B da2ce56a2787d6446fac6b5d3b20b661d0d0bcdff2362ea8e856d18cc7d9c9625540b49c41f7f123a9228fe1d995194907322a7ff421371f87a22a3b6ade12c5 SHA512 cadc029f641b4303325f4d4110a130bc46b1e74b2c6246bb31cc07ff2bd8801adc6438cf2253897d3d6c28bf4fd6f9bad098b73d0e664b79bec5899157551e12 +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-signature/Manifest b/sci-biology/embassy-signature/Manifest index 70ea7d7dabe5..bc80d72dd429 100644 --- a/sci-biology/embassy-signature/Manifest +++ b/sci-biology/embassy-signature/Manifest @@ -1,6 +1,4 @@ -AUX embassy-signature-0.1.650_fix-build-system.patch 2860 SHA256 768fe1c2740827007d475f31451195090032b907e0ed5b36b9201504d6eb4df2 SHA512 54a6027b2fb1d17eff98b7c1e9adc61578a2845b30be3b7c40551b4291950ce11900798dbf7d54e1fc9421743a8d313fc42a14cfa39976735ac8cfae5a297954 WHIRLPOOL a272e7679d14c883fb76d83e78e429582c776364c590738f4bb6b3e793f54c95bd0bb42b263fc6ca5569a34a9be2e84a2dc62cb67efe05ad451ac0513102c2d8 +AUX embassy-signature-0.1.650_fix-build-system.patch 2860 BLAKE2B 33e2c35f574283d979ceec4fd6c3f007a9e8a0bbf111e8873866de331b6474d5fd6f3dad3af980471ac3155f5e82637e60ea26ce5217a4e9a56fcc120b408e35 SHA512 54a6027b2fb1d17eff98b7c1e9adc61578a2845b30be3b7c40551b4291950ce11900798dbf7d54e1fc9421743a8d313fc42a14cfa39976735ac8cfae5a297954 DIST embassy-signature-0.1.660.tar.gz 622294 SHA256 2ab34cc76caaaefe7914e9b00dd12ee81a32d7a7ccca20ba901d67f1e2c2f27e SHA512 4989693b17c29ece16f94934e1b2f5e62f31c345bc8cbac938450db0d8f5d56ae37be6090c46e96725e63621c5951f8a65461cd36d4aafb1b509f3f554b4e952 WHIRLPOOL 1a943266ee9092f13fb3ad0779cdfe70e3cb5c1ed7d31164a93da90aaea2df95150970e0ef22df89c3cc97dfe7564092f2cab8aad7fb720e2f456cb363666de3 -EBUILD embassy-signature-0.1.660.ebuild 337 SHA256 f6f54e84e70866656557e64974fc3d6773e9c62a3541e4e94e254446e14cdafa SHA512 ce592d367c64428911a735a5ecc3a24000a5b1e8c3b3fcaf466e5005a962deaf113416cd161039eb445a1a41f7296ca7376531396bed019047c0d97c86296585 WHIRLPOOL f0c8b7d716026c97fc01f50ece571de4d13c522832c1e2f65aa1f57cc7ac0a3ada05ded0996f2822e31141cf5be19779ae4c928ef947c6e7749145775d8be929 -MISC ChangeLog 3722 SHA256 535090c557eb13db1501c464a1ca480e81081ac6a447d8f9b60898fff0aac43f SHA512 21cf306716bc2071f5344c7e7a89380eaaeb696d4689fcc4e26844f50f0ab170806cee5949896d6365a86f21dbdf16517e6eec6c03720726192b3ec58b685d62 WHIRLPOOL a4e86701782c8a8f9f557d979f9d6ea383df0c95438843623b295740aa81776af5af7c3314374aa76c08e936e5e511b20c9198a1090bbebaf4ff7af5270b4428 -MISC ChangeLog-2015 3864 SHA256 27b743af18ee8d2fc1420f1dcb7aba01c65211fb4c7ac965a2926f141fa8428a SHA512 220fd9e7da3a4c4a306631d4460b39431de1e5d29af32257071e0cb35c680541eea139825c5bfe1760e7313df2b4695b2cbe7850fe2fc916f3cb50c66cfd50e3 WHIRLPOOL a1596d167902201f0fc6f735186372d6c0f5de529106f524af11bfb8de08e9d1dc518a0984936c4873f03d062a43b6e5a168ea2eba10a16edcaf83cced3fdfd1 -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-signature-0.1.660.ebuild 337 BLAKE2B f444c8dd91ae1f214be4687bced734b1abf883a5f4efbd844ce2ecd30b026e65f22b7aa73695a10a1913b8c8aff569327e88a5555d4635d7409a99c1e75287cd SHA512 ce592d367c64428911a735a5ecc3a24000a5b1e8c3b3fcaf466e5005a962deaf113416cd161039eb445a1a41f7296ca7376531396bed019047c0d97c86296585 +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-structure/Manifest b/sci-biology/embassy-structure/Manifest index 6f97607adee6..37e7f5313e3d 100644 --- a/sci-biology/embassy-structure/Manifest +++ b/sci-biology/embassy-structure/Manifest @@ -1,6 +1,4 @@ -AUX embassy-structure-0.1.650_fix-build-system.patch 2860 SHA256 e8d2923a0cc2eeeb97ed731afb6922fca203887e1b3570d0e46910065db86ca6 SHA512 8929ee9e2eff5636e4d40ec5d1860d866e90c17cc23f4e75f44fd829409591b869cd5feb13a6c02bb5d80a9a7ed55c06f7be45f61268a768ddfdafe84188237c WHIRLPOOL 80f9e14144f20bbf64863804b28fe6fca2a7856d868d5d43ac612e0ab9d3d655a979734ae77c97c3ac4903bf577a3384bc0041d0b4c69faa03bd41edb3fa8e44 +AUX embassy-structure-0.1.650_fix-build-system.patch 2860 BLAKE2B ab45dd016f21520afcf8bf949f150441b7c7d451e35851ec05edbacd3145f559ccc18550e8c836c0663dffe3fd47bafa0d8501028a7f4bbc51161f02d6b24243 SHA512 8929ee9e2eff5636e4d40ec5d1860d866e90c17cc23f4e75f44fd829409591b869cd5feb13a6c02bb5d80a9a7ed55c06f7be45f61268a768ddfdafe84188237c DIST embassy-structure-0.1.660.tar.gz 588118 SHA256 06c3d07f495247d1427e91887fa00df053486e2b59f0ec722735bb0b957502f1 SHA512 56fb0ed975bfd95b1fbbccaf694e0617ec23971d53bdc230eeb6ca177907e784805697193e7630e4a513f1b4ee7a1a7974136520963557c452185be4ed22b641 WHIRLPOOL db988aab3f6d2165f44039385fd0a7ab2d6a7dce12906714d5932b411e3dfeac7e06a219af048ef120ea22acab3c1e958fefe68e6e1f19eec56de82c5c1b8c03 -EBUILD embassy-structure-0.1.660.ebuild 337 SHA256 f26b1a6676d2c48cb8305cafaa7cea8a8f0d493b3f50aebbef031087f02704de SHA512 13a68a4590058e36d0ee5e016bfdae8e2115aefdec8d50ff988b0841f6bc1cc210c090da97811c4aaf654e132f32b28bdca559dcf157d7a3a0a66a2dfc946c3d WHIRLPOOL aac75fa870806b87b861cdf3c7471f9d3238db859ba7786f02c05029990ff88829bf8c1d518e5d01f686e434170b21fb67f4a174e71545a3f4ee894e381b66fd -MISC ChangeLog 3722 SHA256 7862433f0ae9699bf7f3556c0078a17e43608fe0d2914ef483d92fd05aa9e9df SHA512 64aa480179e8f71e6c2bed04b52758f4d2e64c613be7d4ad16b36600153c13987fcb06d4a0b0c937366262c7838145c65a708be0730acecb19da745bd519607c WHIRLPOOL 7421edc569bc9d73364c8edc5d594ce116c1f14aea40d437976a87a6e2b3ef3204b4ff583a658ffb11edaf1cf00c17669d3139a0aa350cd7d702a1aaa78ced77 -MISC ChangeLog-2015 3898 SHA256 5fe31e03f1c5d75ff9606b6d89fe311de8692e7c97ae3ad7cc9924e46cba5f7d SHA512 6a3f1667263fae6eca976b85eacba15d71121087e6d9803c0bd995c2cb3986c6c33e02f274c10a1c88ed3fd206dde4456b49be0f663866c07dd256a0de8469be WHIRLPOOL c9706fc2e9d630616f3a4e90873bc7b8b8a59a9077fa69140aa5e04011418a49732003d2240e486f7a6b629ce35b19a4a1eeb31d28fbc28dab4e98ca50e15fb0 -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-structure-0.1.660.ebuild 337 BLAKE2B f20f50b58478ea73245f73816d3ea85d5d7bf19224aabed1ac14bc433017e9a37416a7f23b5915f00d80f9d9c82a19555504c9f47febc1a6979c6325ea64562d SHA512 13a68a4590058e36d0ee5e016bfdae8e2115aefdec8d50ff988b0841f6bc1cc210c090da97811c4aaf654e132f32b28bdca559dcf157d7a3a0a66a2dfc946c3d +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-topo/Manifest b/sci-biology/embassy-topo/Manifest index a1f17bf5ac50..f9cc258064e2 100644 --- a/sci-biology/embassy-topo/Manifest +++ b/sci-biology/embassy-topo/Manifest @@ -1,6 +1,4 @@ -AUX embassy-topo-2.0.650_fix-build-system.patch 3167 SHA256 d78bcacee455ab12fdb482fa760eb89716da3bac9dbf5ace0f9bba37f2585dbf SHA512 bacff621e9d80d39a4e415736e1524cf69dd86b0253f65fb52ad2dda200cafe8e14af296897c3f695bbe360f2a56862a40dec6b8b0d0e597310f065e191ae770 WHIRLPOOL 09ffc786288a0b428f349cf74973729a9dea8d8ed2078897538b97b59ef41cd48053e0763c6665310a770c6410b28726fe9c09b0ada9543d6fd8054b1e99b24f +AUX embassy-topo-2.0.650_fix-build-system.patch 3167 BLAKE2B 84dc4a55e13387263400d03904c14069baf93746ce32878349cbaab3c1d39aad30c448b8bf01fb2cec0a057403a8c8d7befd3869c5c28299e6001f25738a16c6 SHA512 bacff621e9d80d39a4e415736e1524cf69dd86b0253f65fb52ad2dda200cafe8e14af296897c3f695bbe360f2a56862a40dec6b8b0d0e597310f065e191ae770 DIST embassy-topo-2.0.660.tar.gz 443510 SHA256 a8b8b7c1e04be44b5d6982614a9af44b84d0282bb917ed29e23a0a710241ad6f SHA512 8ef157a61ac47680734bed3d07cfe2bcd86730998453daa704b74aad667944ad6b0cc6f7fce36be4566cb19a626f1648d5f6793ce227cf57939fcfd0d10690a8 WHIRLPOOL fbe0edadeafe14b4b24be6fd65ed51dc9572f89e12e6f038017e9dd208a867138219350ccde6ca3eeab94ccedf34e5ec672a65cbf30c3819387407e778caeb55 -EBUILD embassy-topo-2.0.660.ebuild 342 SHA256 07b735f534f885f651c75d4135d45d15417fcb97340ff25cf4ba4e03612b7595 SHA512 c2a0822f7d20ae5c2bb78aa2f3705517fa7371b154a16395d7b13b5835980a11dce9364cb6d0a90f47a39cc729692b4567ceb5085022b3c0ed41535a3a8ab067 WHIRLPOOL ef6c670b13175f0f99d48aa7b978757c7ff1bf6e2984909f6ba8a48de5f4c2d79145c2dfecaf6e3a6f90dda93fbb7942ac38f6db69707e69bc943e8b0822c28f -MISC ChangeLog 3671 SHA256 7e5217f1daaad28f1c3c4137c619bbf5075360217fe9ad443a32c7a61e8e94fc SHA512 7399a29b68d4b9d974c463aed165882eb8ea32c48ae8297dc2856cea08d032db73579aec4d243f31032df947cd560cc00b6d7c17a3596b9edccca0f693d4f45c WHIRLPOOL d4c5cf7abeab2f3e68ef0c12e8eb48e2a76a653f07481fd9aea955a159c68eaa09dd86108b9181c3965eaf504c4fea191296a5142727926d864c61d718d66db7 -MISC ChangeLog-2015 5212 SHA256 9bf176f777b2a7325026c20377fe46465c1f29f96a1af3e78ac3721a511bb30f SHA512 c7c527494cba100183d37b40b97913f3b4d401de0d990ccc1bda92288deb994e25f8daac07ea14b18287435a3409ec81a489bdf2be333d21ace00db07f1835f7 WHIRLPOOL 05b8f8040075da4b7e2277547af92019562d3a744b7370c2e9dc98df7d43d36a3972e88ef96295831c95f23d0b2c4027ba3f6ceda25304699c4be490c2c06f3f -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-topo-2.0.660.ebuild 342 BLAKE2B 268ee1b91524560d28c58cfacfae4f249fdb9efc3b34aae381e6779005fc7a7022b56c74f61e8cd541dbb9bd112cbb7a9c0a569272e0962252104eba435615be SHA512 c2a0822f7d20ae5c2bb78aa2f3705517fa7371b154a16395d7b13b5835980a11dce9364cb6d0a90f47a39cc729692b4567ceb5085022b3c0ed41535a3a8ab067 +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-vienna/Manifest b/sci-biology/embassy-vienna/Manifest index 7d8b7b7889e9..cf7581f9f50e 100644 --- a/sci-biology/embassy-vienna/Manifest +++ b/sci-biology/embassy-vienna/Manifest @@ -1,6 +1,4 @@ -AUX embassy-vienna-1.7.2.650_fix-build-system.patch 3083 SHA256 0831ff5582301bb74750a5c4b7006b5ccfb7dfeeaa4c5772c051ed628715a390 SHA512 b09ea9adcc9da002a83e431ff4f3f48075bd885bd35b5690a21ed7d120835a5fa9eaf566fecfd916897e18d539ccc7ea1c8640759996e4979865556eaf8dccb2 WHIRLPOOL 1ca51a2336916b491eb26b846f0810d8ecd722ed9552c1faa83d360a94e8724cb50be3873788e67c05ef10368c43985fde61a61ecb765261195a4eab90289e8c +AUX embassy-vienna-1.7.2.650_fix-build-system.patch 3083 BLAKE2B 294e9896615c7d01a804097249673f86d8bf6bf6757763bdbd2cecf9e328a2b324b6918818f8e33917c2000d5a2dad5a66aa6c0e764619d35048d3c5ca032351 SHA512 b09ea9adcc9da002a83e431ff4f3f48075bd885bd35b5690a21ed7d120835a5fa9eaf566fecfd916897e18d539ccc7ea1c8640759996e4979865556eaf8dccb2 DIST embassy-vienna-1.7.2.660.tar.gz 873165 SHA256 d3c9f64394a5c59151a345c3a2d8e2b3fcab3b59918584776316c204f0bb6c6d SHA512 1484ca419ebcb7776d8f92dd633d4fda1a752a73ccb5189b58f7417a5611e015e9b42cbb37b51f4d5c7a27df0d5cab2cdf1e95ebd70a8359ffc8fa1633d28103 WHIRLPOOL 78679a7aca7db9b67774c9a07e11ecb081b0297c3e9c23e0f98d08ee96f62bef7b861ae223f2962ff79f67b0d9582168e21d869ae0ef6c9c23beb53102a351d2 -EBUILD embassy-vienna-1.7.2.660.ebuild 436 SHA256 df9e13e427b920830067db610d4e1165d0f4adaa0e7970e04a83f7f5320960f0 SHA512 009ad16069bd0a8134a705a82a2d1ee5a3b5de28d434870e9b7298e64885a8c76f1c604432b2d0808d6f4653906e211b6c848496bbefd0c4324d698fb8285ec3 WHIRLPOOL b007cccee75f2b5ad1b2c8dfbe2a64cc510de3accc86c0419699303727cdd881ce190c97967b5e9d08218a13a699318909ffb99c5d892e2b355c506c3a56fe45 -MISC ChangeLog 3854 SHA256 b48b7425e67aa4ff49d83c33f50413c2d783f08d4b2426b6ea2d2c99f5d9509d SHA512 4ded7e01a2a4574c210d7de8baffed5a696489b6a6715fc75cba19c19c987593a5b600c2d24b535310f2f1364952a95eea77c75e540f4634aa09224cf15ceb69 WHIRLPOOL 2b2c4aa1ead8586d396b1b895574107300bbaa1d515ec1287431b74e45830d6998f16fa24ee0b1dcc741885749db8c3dfe00b40ea108e77b5651159c116ba5c2 -MISC ChangeLog-2015 2134 SHA256 4ce8df30009ff6337fa540ba1ad4ae9478c67968b46048a3dcb3ab2a1c2eb0b2 SHA512 55156fd3adf143e66a1f93578657c70ecd3e54134d238e07e094e2344b842bb8df0f5346eb8e7f92257e751f50b06e643c282551b8eed4a3eca661eb11dce810 WHIRLPOOL f24c077f90166fbec7400263a1b4016fb69576bf2c188238d4d60efdcf682a5b7da9c8237eef639ab90ec210a3f146edcc4297ab9065901c3a3646f84fdf2db1 -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-vienna-1.7.2.660.ebuild 436 BLAKE2B e61cd8a676a547d75b80035ffaf6e54d8d02e9ae81713f0baf010394231c2e963b2d61926923f7873d7edb726343088b288b9562df4d8957cf18257f20281ae0 SHA512 009ad16069bd0a8134a705a82a2d1ee5a3b5de28d434870e9b7298e64885a8c76f1c604432b2d0808d6f4653906e211b6c848496bbefd0c4324d698fb8285ec3 +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy/Manifest b/sci-biology/embassy/Manifest index dd5d1c3c6332..edf9827cd22e 100644 --- a/sci-biology/embassy/Manifest +++ b/sci-biology/embassy/Manifest @@ -1,4 +1,2 @@ -EBUILD embassy-6.6.0-r1.ebuild 967 SHA256 a74a8e9824f900ce6049af2d3a5a782a6f5f7ca859d9c753b346d9dc1617ba67 SHA512 028181280e723f6926b9a9ad2fba67f10fb2ce3e78ee9b9dfb5e07948d9b4c1db41c12ee4349794de6b99d2bac8021f856883d01466a5a6421a801eca58f74de WHIRLPOOL c266f5b860cbccbc3a9da7de1b7e22b2a85940e5889e10ce891ac55071b8bf2408b344f49b7391983d38363312a467ab641b1bb892c90b7cb84f6c50940f01ad -MISC ChangeLog 3560 SHA256 5f80df41c055924a1a115ac65050ffc3d7c38b17c1119be85d7adf1675cdd766 SHA512 54062925d52d802de9d076d956619ecb283f82bee2aeecf9f6a78abfff5d50ee4b56eeacfb201315fd4f480f4e4aee306058c90859a5c179d4e526bc9a72bcb2 WHIRLPOOL a9facc21af6eb698ab751c1c821de036e773e23eeecf2ef25179a3390e0ad732f97be78b9b35f308b3c018b4a18dcc1bcecbdc863e7ec8a2a5eb07b3fa4101cf -MISC ChangeLog-2015 5006 SHA256 c5af2d6800d77f862fb0bc5d0b8daa1c35e192d0b579924c756704b0e8d39008 SHA512 b712eeeb6ec48db9690223e4b694c2c0be25f375d01fd5d5f66d613470ecfc189820587c01f50f68fcd782daba62713ca4924687ecfd284d49b8767db954ff65 WHIRLPOOL 5b023359ed56184f3ecacd38ae306820e8d919fecc4e6c03de0aa4d8aea411d9694e6f45f9f3588797a70fb5e98d96ec403ee8bdfefa4f84737455c1917a2f01 -MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b +EBUILD embassy-6.6.0-r1.ebuild 967 BLAKE2B 796a69696e855b0749e4f85b1ab3e5379584ffdcaf4c9cf8c529a65ca1df2fa1cc051d4fcfb9489877fd094ff1491dcebabb0c0351503a3c8bcf3d4518065619 SHA512 028181280e723f6926b9a9ad2fba67f10fb2ce3e78ee9b9dfb5e07948d9b4c1db41c12ee4349794de6b99d2bac8021f856883d01466a5a6421a801eca58f74de +MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/emboss/Manifest b/sci-biology/emboss/Manifest index 3e260fbd1307..ab11d7a9d639 100644 --- a/sci-biology/emboss/Manifest +++ b/sci-biology/emboss/Manifest @@ -1,10 +1,8 @@ -AUX README.gentoo 1522 SHA256 3cbb20ef948613f07698ab17c2b432e3aeab0ade6499a965c538d4feae8440d2 SHA512 a5441a056ebb11d24b83b8bfb9182f0753b85ec5ba126a123eb97c55fc665dadff2cc5f16c8e4314535f1b6a206c200324c0c5d5db6af109c841ee68ac76bb07 WHIRLPOOL b659d2c08416786ce4bdd0de0d61da49c1e6be4524e19c4b262a81a6455bf6b3e24ca0f1c7b5414c5fda35a006827fc5e229411821247b76bc26afda5a0a21d8 -AUX emboss-6.6.0_FORTIFY_SOURCE-fix.patch 417 SHA256 317bff2c29f321afe7274babba8db554420a26744cef6aa73885b18e7434e89f SHA512 9873504675825613c913fbd8c03d919c5d70ad7f15e3983ae9dc5ecd04e57d1086c303a4f38efd29def4f089099b24449014bbe965816c7f8b37a5d4ffa13469 WHIRLPOOL b23ea76326c732d5c25429589bed6301d0a6e9342523275a40c225c2af0e25eb2b6279905c52633b35eb3208bf43b7f4a1307c5f66bf95e81e8c8097d967d801 -AUX emboss-6.6.0_fix-build-system.patch 12599 SHA256 9ff77b03a1b1d5d28ae7720a6e61ddf226337d04aaf4da69e3c9a5918dcea7de SHA512 60dbb50967b0b855fabd68f2df7713da81007cb84aeb3f2d7510d13e533e3b19ed3d07e012010ebb1b2af04522f6f2142fbef405b9b580740a6bb5d30319b67b WHIRLPOOL 938e9208888fcb180177585c777465b1b2e82588a4a06588b79e85b76f53509c0ce04db6e03258bcb3ccc131c6d815a07b8933474bf98a2ecbe1359595b9892e -AUX emboss-6.6.0_plplot-declarations.patch 1562 SHA256 d0146d519f23c0bee9c2b13cde1c8f6b4e2ae333740672623620d5236e58326d SHA512 fc27b7c1d518b5cdacf1964d56219c6574f43d18dc324e41b9dcdfd1afef17a784f2b209b62c366fb902ba57a50f438a1b328eb2118ee9463ce82b36039bc0bb WHIRLPOOL d23b7a061d1fa41c8319fd9f00168153022a70575148b6c23cd41d9fa9cf393caddb3d26a4ebcf94b66892998bd356b2ea391f448306706e364603bdbe809153 -AUX emboss-6.6.0_qa-implicit-declarations.patch 1324 SHA256 87de58d0a6225ba7f4644edd802d8c8658d59bd8140b48771da86b849e725b96 SHA512 15c303fe48a438f50f1c9a0efd7e8fcbcb4102151fc182feb8e0d74c47c3435385a1e44436cebd3c2017c97dd89b82832258748f28f3740e511a92b088f539fb WHIRLPOOL d1aeee505672c1ec596afc547052324144f4b72f397722d9e387d94c1940b30f81b8f265d9cd1ef902dea083f628ae79a3a3e5f65bb2342eb54c57fa169ca60a +AUX README.gentoo 1522 BLAKE2B 566213e78e6c74fc6c8745391fbdbc477c9d1793f74e68fb0465ba4f842203e1670dd6216c4181326a4ccbf0c051daa99a376a15dd5b0714473f84ed8404e8f7 SHA512 a5441a056ebb11d24b83b8bfb9182f0753b85ec5ba126a123eb97c55fc665dadff2cc5f16c8e4314535f1b6a206c200324c0c5d5db6af109c841ee68ac76bb07 +AUX emboss-6.6.0_FORTIFY_SOURCE-fix.patch 417 BLAKE2B 6662dae6877f28bc53942e3989846835721c31a79eeb62fd0b2fc4bf5bf8dc63c25f43831667985109f109bf463f795190018801ba84811c7e94b135047f7d4c SHA512 9873504675825613c913fbd8c03d919c5d70ad7f15e3983ae9dc5ecd04e57d1086c303a4f38efd29def4f089099b24449014bbe965816c7f8b37a5d4ffa13469 +AUX emboss-6.6.0_fix-build-system.patch 12599 BLAKE2B dbe6a94a801b0f46df0e7490c7b07ad85a143c07821d8bc083221d07b1286275c7fd5cd183c5c08d06dc6fb3c71eacd265d872647828991fd52551ae618bcaf7 SHA512 60dbb50967b0b855fabd68f2df7713da81007cb84aeb3f2d7510d13e533e3b19ed3d07e012010ebb1b2af04522f6f2142fbef405b9b580740a6bb5d30319b67b +AUX emboss-6.6.0_plplot-declarations.patch 1562 BLAKE2B f6c19e6cb7c2eb8110a3841ed566d81411e75a6898cdfbb8ce4754a69291f78a069a44fbc5027430611ee83ca5a7abe1e536a59bedd01e30227c5762622614bd SHA512 fc27b7c1d518b5cdacf1964d56219c6574f43d18dc324e41b9dcdfd1afef17a784f2b209b62c366fb902ba57a50f438a1b328eb2118ee9463ce82b36039bc0bb +AUX emboss-6.6.0_qa-implicit-declarations.patch 1324 BLAKE2B 42da02b30fa201e24091df762386a88ad76709d192dab95c82cf578126ef9973ba1e927711ac5dd3eee1cfac22a2d29fc75045ce72322cbd7faaa6d50564319e SHA512 15c303fe48a438f50f1c9a0efd7e8fcbcb4102151fc182feb8e0d74c47c3435385a1e44436cebd3c2017c97dd89b82832258748f28f3740e511a92b088f539fb DIST EMBOSS-6.6.0.tar.gz 117962028 SHA256 7184a763d39ad96bb598bfd531628a34aa53e474db9e7cac4416c2a40ab10c6e SHA512 2d28a03381f7dc98d205aa50202fbbac02ad218fc775d86579d310296be124403623484b1907154d915f15cd32a9f8cf16ecfaa6c4a28b362e24dc8e6380b75a WHIRLPOOL 25241e865b1ad4e5459f84a2b0def7cd00a6e2904db714838dfe0533e01f8373cfdd4c78df225f9d2a77ead4cb9998791bd19f46b32e220810ad950fa288b9fe -EBUILD emboss-6.6.0-r1.ebuild 1648 SHA256 74dc9b874d2cd6a49e18b9f354c011e4ccffd2a256903115872d404a9ff55efb SHA512 3ff85cc699f9ccfaf68d8335b8631a7f976ad69e82a8bd0be70123fb61ab90c50250691c1e507b2ba891a07b5e6693612209d44780afe35ceef4e2c431f9d265 WHIRLPOOL 98bcab5a9f8c285d9c00d0c08784e060ac65913668dcd2bb36fa30e311c367454fb3b7610eeb233bd44a0b0314b53a8e8af65f6e297dc3d423191cf3b17514ce -MISC ChangeLog 5649 SHA256 6d655b59592dd57123b0bde406c08fcc5e4f63943e7918d4e24563f3bb55c9cc SHA512 1666627eab0475e700adef75869d76c0e5aa2fcb7a8487fecb9905dbc422b9272dac58f837c90aba126bda8f44dd6de4d4022d34ed0de987be10e35bbcec8645 WHIRLPOOL bfbc42764b3c95c3ad99ffa52ce5be9fdb43994ac2956961471fc626ce1ec2cd6df835fb9e0a339a963e53d3d2bb2ba4818560073f15d947d83a4e496c96ba44 -MISC ChangeLog-2015 13162 SHA256 48e1aa2076b5f4cb4177bfcb0133c424d7e1ee9a3cedc9b11eee74e426bed4bb SHA512 104d3b3f33162d1f22e0136b4cbbec298decbfe386ab5bc2f4e46e900fb8017ab36665b8dc00bdf6e20326f54131f16ce43b7863a4801b277c7517c8bd44e813 WHIRLPOOL 45b332443d0ba23f278ef2d58087e7c1f9d14123b704f633cc67ff9fe16e9a54e0b2d8e06c5a52cae6cb4acce1943693fc69f484da2addf2268df2bfbd9f641a -MISC metadata.xml 1107 SHA256 a4a887fdc78fba3c2f9e9da6b8187ce74f0914ec57fdecd292abdfe9c6147d84 SHA512 b39a7f8b99f837b49190a19ee3b3f1b79cad8e93d3d5c88e5bfe30a009268d7255fd09f7f0eb3c4b574bed89acf5884ba981b146bd9706f4e0666acdac82c429 WHIRLPOOL 7088e789d13fb2b5b19d193ab29aeebfaf22c11b5f7eabf0cbdcfa2809680071686d18bd4e2fb9ba2dc89707f1705018b1b26ef3135517dcd573d75d77078662 +EBUILD emboss-6.6.0-r1.ebuild 1648 BLAKE2B 0cc2a8c446fbdb13cf5426e1a12b2585d6cd779059a1237e8aa2936e395b608c88eb02d0a591cf708344691a8d83f70e19c046c4f979897913c5abb40b7dba26 SHA512 3ff85cc699f9ccfaf68d8335b8631a7f976ad69e82a8bd0be70123fb61ab90c50250691c1e507b2ba891a07b5e6693612209d44780afe35ceef4e2c431f9d265 +MISC metadata.xml 1096 BLAKE2B 704b6e7e0e9cb07a4cb184813ede8d7410d6612b2c8626838383a383dbd44f85b7f1dbcc988634f22d06ad76fbac927b4fd8a8836191be702c4f99a26343c6ac SHA512 4964b7e46d9fc16fcc44aaf83d0bb21a5ae860300764ca50e25f51ee0affc55fd863027747eb8e0eeca3578eefecbe23cba5ce68d518960e1721047cbefa9a3d diff --git a/sci-biology/emboss/metadata.xml b/sci-biology/emboss/metadata.xml index 9a479025456e..7443e66b770f 100644 --- a/sci-biology/emboss/metadata.xml +++ b/sci-biology/emboss/metadata.xml @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription> EMBOSS is "The European Molecular Biology Open Software Suite". EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user @@ -18,7 +18,7 @@ analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages. </longdescription> - <upstream> - <remote-id type="sourceforge">emboss</remote-id> - </upstream> + <upstream> + <remote-id type="sourceforge">emboss</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/eugene/Manifest b/sci-biology/eugene/Manifest index 86558b2b80a5..f13faf2aeed4 100644 --- a/sci-biology/eugene/Manifest +++ b/sci-biology/eugene/Manifest @@ -1,10 +1,8 @@ -AUX eugene-3.6-overflow.patch 252 SHA256 cc8795d5f4525a299bc3e17da1e26c1e5fe3ef0c2371c5bf9de36b5037972fc7 SHA512 ed39c8d4aa73ba9e378a025e740c50f1b431fbb4590e3e9204f789081c8b22aef05fb4ce9ac7a0f22015ee03f73392730894a8dea5f6f16cd4533172e46776ce WHIRLPOOL 775e4167b0efa7dfd1539b01c20f4ce268666840d5c2766222deadacfcc21cf6697c177efde0e777c398ad4c888ee3df1b57113b451b1700ca5965b718c8432f -AUX eugene-3.6-plugins.patch 1784 SHA256 0ec9c0d2bf6009e89612c3d95711b211aefc267d3eb6b75bc6279318256bc46d SHA512 300601ee6abe469460ebbe29c45468d516e5e781ad4b0542e9590de38ba6e98e3697c5f6f92f83212a1aa6da5e0650636af279d82241277c0b43fb5472028fcc WHIRLPOOL 695b8efe382014c6e1c9c44bebab3ed417b7ad736fd7db5623911971926bab284e9bdfb2ee5061287c99a93433d060040285765f37e0b283ecd83717adca5359 -AUX eugene-4.1-format-security.patch 609 SHA256 391521469ce4c6df425084d9b2df611efe2721f563b15843f495064ed72d4553 SHA512 f4eedd5b70309d4b8eedce8f3a4f79b65e595d407e88fd79e7f4f2f8c98880432366124b7f0a34c9032c9a498a1db607b0cac20304e84ec01f736589924ff362 WHIRLPOOL 5b703b25d049f9f9fb78d543e72cde8130f9f1e116aac26e1c748897fe6558507d22f2ce08fc7c4e65568f5213fe4fc7de111a58043c88ee94586c4aca3f71e0 -AUX eugene-4.1d-Wformat.patch 2719 SHA256 14277b76320aed2551af0557c373431f556b4b39eac8b73365b373a253a6a543 SHA512 b235c11791caea63109009b858cde7ec179166640f009bf58caf33a8502345360efb71208a330572d7f870c468810bb9ab54db3e2af187a0d2baba7e12c6ff96 WHIRLPOOL be016418800bf8410bb637b2827ddec33366607dc4e0a0bdc014b1ab21599dbc0b26b5363c70d3c52d6da0b92d8119444addceeeac6466dbbdfe54137dec845b -AUX eugene-4.1d-fix-c++14.patch 635 SHA256 80a443e3390ea4fcb13d74f7a3085d690d11409c4212ed35ab592116ff0760f4 SHA512 8ff6a8a2ee4b70b14d0fa9984c057307fe5b7d22e8a26969d82fb1ab7ee30a90cb3520ea8d3e16a59f09dfc46a3310cb43c621fabb31a39216209a4c3523e718 WHIRLPOOL b7c847f0bcf3386b585106345401f7742b0cf4de92556fc5ee98273c1f94ff619e2c640336c7d2d05205c797d6a17616e4775d06f7d1d49ef9cfcbc7015ad6a9 +AUX eugene-3.6-overflow.patch 252 BLAKE2B 83b82992d734996b2878028329642ec015a53f6b281255637e5b99eb1d69eea0a6d44b03a2f24959eebc426553835142b479636a629023731d5a2d05ad2b5064 SHA512 ed39c8d4aa73ba9e378a025e740c50f1b431fbb4590e3e9204f789081c8b22aef05fb4ce9ac7a0f22015ee03f73392730894a8dea5f6f16cd4533172e46776ce +AUX eugene-3.6-plugins.patch 1784 BLAKE2B 88ab82e4a1f351587108371ef545ae630277ddb1d4d5bdd31dfa58bc705ec2f06b92723622c37b7f2ac917bc18f089060d2a4c0f2ea3a6e3aa4af288429e13f9 SHA512 300601ee6abe469460ebbe29c45468d516e5e781ad4b0542e9590de38ba6e98e3697c5f6f92f83212a1aa6da5e0650636af279d82241277c0b43fb5472028fcc +AUX eugene-4.1-format-security.patch 609 BLAKE2B 1571c5c3af87e5ea49fa1f5b5ce19487c1493aa85e8f7782645874abf62c9e5d09e2e8c4c6aa2c5f44aedba257859d0245fcbbd28ae57d24dae118c562561a3a SHA512 f4eedd5b70309d4b8eedce8f3a4f79b65e595d407e88fd79e7f4f2f8c98880432366124b7f0a34c9032c9a498a1db607b0cac20304e84ec01f736589924ff362 +AUX eugene-4.1d-Wformat.patch 2719 BLAKE2B 6dbdcb4e9946d0245eeeca1ff23b5d52ff3b37a64cbd88838229836323959325c7f54c9b00dec0abc02c218c4761ddef00def7f111c41df628af6d06f2147a6e SHA512 b235c11791caea63109009b858cde7ec179166640f009bf58caf33a8502345360efb71208a330572d7f870c468810bb9ab54db3e2af187a0d2baba7e12c6ff96 +AUX eugene-4.1d-fix-c++14.patch 635 BLAKE2B d6e72bd7e4b80f21ebbc78cfc5f791fa23b0c22cd3414a5ecaaf50c54e1789625901bd0f9a5357f523de5dbca02d75229557d8a032f2e7cdd345e7dae3dbe19d SHA512 8ff6a8a2ee4b70b14d0fa9984c057307fe5b7d22e8a26969d82fb1ab7ee30a90cb3520ea8d3e16a59f09dfc46a3310cb43c621fabb31a39216209a4c3523e718 DIST eugene-4.1d.tar.gz 7473965 SHA256 c160e6b4206e6700c866f38fee2c8fd0d69972d51ebc5b4cb7680774a419f4c0 SHA512 dab37930e211b3783954f6e4a762450760201b77e0b4214f16724516d9be583d0a7ec44a2f510e73f4370e9c2dc67a425456a057fdba8f51cb72386e16a26ef5 WHIRLPOOL 7ab116acd48648673d2cc633bae26908bf8250c5a17b9d5e8719dfd56edcdf716406b80af26a99700d9ec81e625737c57fe16493f670245f21999fef1c6911eb -EBUILD eugene-4.1d.ebuild 893 SHA256 acf012e114990142a903232435a07e36368831cf4f05ff8746398380383ead3b SHA512 9db8db10b469392a9a124f02dcf1272307c6c44b9734d5f101dd13092701a16f64394408200731a63a14d5ff9e2f3ca83b2391b762b312f1a4d163dffa0b0822 WHIRLPOOL 28c67e6fe06406e0b6648ae6334d48c17f19b0a1959a02df38449553762f5543ef08f1a1cff64bd5f4668b5bc09ba4d9ec2f1b7d7d9ef24920d60a17dcfa9eae -MISC ChangeLog 2831 SHA256 d9ac5006d8a7cd57a6b3a727b21556a20438a300f29b0cf10249ef8630cff0f3 SHA512 c7336aec414a57f81cd85c2b92556a0879bcbb9513b443439be282e02ae4073ce3b5dfad61d0265006a640586d8c0edc08ff6af081d2f794702e1d4b0191e177 WHIRLPOOL be4d86801ceb655f5017be4c527f2a992df7473b257b9febbec8809c1c918beef7844b70dca9c86e2cb0cfb8eb3c38d22b893989d2f4e55da570f0cbd3737e18 -MISC ChangeLog-2015 2009 SHA256 9cc7672d01f3ea069e1465072396b59e81cd8aff667ccf3e5c06776e0bbc571b SHA512 4c25d7d81ca0f63765b8635bff0043d9736e6cec7bc0ed5a4481309851e69bb7a059348e7d5b9a3b0073d68b5e04c3890349a9d0ba92d56f1c319500c58802c6 WHIRLPOOL 664c9da77c8e2bc49b29633d4f04cd9a2e1f1ed7e8f62c276cbe9865c7918ad6903e9cc78b87ac8788e56e331fc08eba18cbf864c0efcf8a72721460d1a82b32 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD eugene-4.1d.ebuild 893 BLAKE2B 5aec582935c0e5e2c6ea9a14ed06a14d65c2759a3bfa1fda5fa940f1f700fc0bcf198bb65d47996afa4adc719bf9d40613bb635089e59cddea566518702d4f77 SHA512 9db8db10b469392a9a124f02dcf1272307c6c44b9734d5f101dd13092701a16f64394408200731a63a14d5ff9e2f3ca83b2391b762b312f1a4d163dffa0b0822 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/exonerate/Manifest b/sci-biology/exonerate/Manifest index 90a0b4fd4154..ac266b66405c 100644 --- a/sci-biology/exonerate/Manifest +++ b/sci-biology/exonerate/Manifest @@ -1,6 +1,4 @@ -AUX exonerate-2.2.0-asneeded.patch 362 SHA256 6c3d42a87646760cfede57c38227d379c24a7a1cc867a619667e187680757a98 SHA512 7c08fe7ee520ab7198557f5ac7f99f0bae53da77d46949d6bac78a3330fc9023a4aece085e060ad6a40303475999654dcfe5311d3a78f1d1be0d461cefbfcfb0 WHIRLPOOL f136a885fe1d50ec182d855f05a832a25451212bf4047761f76bba4435d9d3b5a47edea4bb77e9f8e082c0adac4e90d1b8537a704622e30fee285b795cd3195b +AUX exonerate-2.2.0-asneeded.patch 362 BLAKE2B 57bb7d7d57bf2347fc0cb20f650cd0a452bd70ed8ed46a87d132cf8d68e152438ec2c4e877129feb91748f5ca43021cc0010cf2f50b3bdb8eed60218d904eb27 SHA512 7c08fe7ee520ab7198557f5ac7f99f0bae53da77d46949d6bac78a3330fc9023a4aece085e060ad6a40303475999654dcfe5311d3a78f1d1be0d461cefbfcfb0 DIST exonerate-2.2.0.tar.gz 509870 SHA256 0ea2720b1388fa329f889522f43029b416ae311f57b229129a65e779616fe5ff SHA512 c0aec4df83fbf6bcd1b27242397349769211ab88d71e2d081e20cb5453a03acd805807535a69841e991cf543d99fcd458cbd22d60b21f0fc6ce813eac45b838c WHIRLPOOL dd7ba7a94b93f41d5ddbc66cc14740973dde20e875f37814229614c85312dcc1de031faab5153bc28be3284144d0f8451bd5e5115f8d9e312e4f88d771ce620c -EBUILD exonerate-2.2.0-r2.ebuild 943 SHA256 df65037ba33c38db84e5efc46e4d4a0750aaf7ac054a378abe3d81c557ae83c7 SHA512 830ed336dd8bb4cf59fb59099d968459530fe37ae8b1874d535dadf4d3874410592d28049abbc8dd0e66ccc4e277cd7855602dcc42e7ac61394249557cf033a2 WHIRLPOOL 192f197662a28d4f56662e402a26231dd951cfe0e8172acf16686f4d2620622d239a7ff128175feb38b91bf8b49aad9f19fe7ed7a533e5bf169eaa68afb6a577 -MISC ChangeLog 2604 SHA256 837c48a04a9024668892f9dd3aa47dba377890e2ecee18a723eb0f8e3b3ca96b SHA512 2d3709081b376cd1abf2af386c2db9cb532ec1442cc5689e3c469124cb7eda7f828ba89ff22f78374581f13c52fa54518597d13367fcb977b63e91d36cd50070 WHIRLPOOL 93af106a3ff2efaa175044e78e6c0cf51d6ea52f05ad87e489f32723493956a5965e0b9a5380c2c5a9c8548e485df4b329500234fe7a1bb58b636250595b7c06 -MISC ChangeLog-2015 1396 SHA256 0f68c730203bf609473c6b2cbdf22db5657b4ebdf9c6627687db5d10d1251518 SHA512 3615e0ddbd40eea5b23937598a96c6e3affe1f28eedd4ecda6d7d4edb195819fac2fb2f84ea9c2736c7d4c07a17e9303ccd918de5b4f228bb1b03ff497c88469 WHIRLPOOL f00b2d484b5b9d5aa440eef62f95a80490e5c8c07b1cec72bda480a2515d4b3338babe2b6a323a249905d0559e23ade6880921a598f568380f83b238872afb70 -MISC metadata.xml 449 SHA256 367ce7f367d26df031c20e887300e862f50ad5bbfe0019f6dd9178267d0408f4 SHA512 ad7dce91503151adedc204bcf1b678ad8bf9bd6a0cc7a207c9225781eeb32e24906794028aba1770260a52e2a6e9c823f138a003153f3e4c49c47228bc112f49 WHIRLPOOL 873ab156b88cf810abd917a9a7e1389fcdaa98f747fc66efa038925b7431233b4255bb877ceb68d62ea84c849358132b87a464546ecdac143476dca474857cef +EBUILD exonerate-2.2.0-r2.ebuild 943 BLAKE2B 7671c56095f96f92562690260d66551df961b01e5467ce6766b44255ff67ad11effc0e8f131c3b47e64152d77ad4792c41a4ad8b293342685d17709355d97499 SHA512 830ed336dd8bb4cf59fb59099d968459530fe37ae8b1874d535dadf4d3874410592d28049abbc8dd0e66ccc4e277cd7855602dcc42e7ac61394249557cf033a2 +MISC metadata.xml 438 BLAKE2B ae3dbc6cf8628225e3238076ec24fbadffd60818cb051cfc153c37af4cadbce7070697f0a2f21219a5a32aa9ebe8e4518fb2e4eb0e147959965f468fb0629b2d SHA512 e77d02d4d9664234895ef29ffc633e2e8ae49ac8c324fe0e82ac6ec3ac416570443f4a9831838d2eceb420398dfb5c5872b562861002974fa8754b2d846cf777 diff --git a/sci-biology/exonerate/metadata.xml b/sci-biology/exonerate/metadata.xml index 09b6a9e09e43..7851377e083e 100644 --- a/sci-biology/exonerate/metadata.xml +++ b/sci-biology/exonerate/metadata.xml @@ -1,14 +1,14 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription lang="en"> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription lang="en"> exonerate is a generic tool for pairwise sequence comparison </longdescription> - <use> - <flag name="utils">Install all utilities</flag> - </use> + <use> + <flag name="utils">Install all utilities</flag> + </use> </pkgmetadata> diff --git a/sci-biology/express/Manifest b/sci-biology/express/Manifest index 6bd37964dc72..c44025e8d250 100644 --- a/sci-biology/express/Manifest +++ b/sci-biology/express/Manifest @@ -1,9 +1,7 @@ -AUX express-1.5.1-buildsystem.patch 1956 SHA256 e4266c79b6d2c34e518cc57a9542543109bcc484511711492b146a7a49cb1187 SHA512 246788b75a7f40c825cc7bf811de2bd44607b7ccf139d7302480ed7faae441ec95d5a37aec7f04effb1e3e47ed774b08291321cd227b0fa79306969b39e93d54 WHIRLPOOL 195d13b46b3e9b3b651c3994148049f7c626dca395c2dbf1ca2eb5e8febb1b8d3d8ef501cd01a62fdc4a5a7a1236970fe6f644f9d5791d3b7fbbe28d7b58a7a3 -AUX express-1.5.1-gcc6.patch 722 SHA256 64be04111783bc1a38089d9a1b901f67c7499b894c51eb2e68b36b061fc0cfae SHA512 bbc7d7980bc88e241a76ad2b8a661ac8232f2cbc1a8cbf526b43905f9cdc52b57aadf8fb6bb03181b51893ac4e9d384ababb6d34582f7e24e6ef2ecc8fbfd73f WHIRLPOOL 9fa75d753b6432fb5e6bdb52ea54ba4d5fcf57fbade90ca2bb93c291c0807fc597d0844f7b6821822cd5b22d18060e3654d9b86ad9c5f1f544bcf9e9e4cbfedf +AUX express-1.5.1-buildsystem.patch 1956 BLAKE2B 3cc9bc2a3fb8bc55444ed17984645bf900f253fed8b611395f7de3e744cd1c448af00bb8a83244f344801b9cc9d68c731e8338689bf29463cf2aacb35765d741 SHA512 246788b75a7f40c825cc7bf811de2bd44607b7ccf139d7302480ed7faae441ec95d5a37aec7f04effb1e3e47ed774b08291321cd227b0fa79306969b39e93d54 +AUX express-1.5.1-gcc6.patch 722 BLAKE2B d4c5972d7f3714e33ca85258a32101cd8975527aaf52846b116b75d0cfba94af9173d338d3de0e9051e844f23d6cf2e578340e0986afa9e5ee1ccc29b0781db3 SHA512 bbc7d7980bc88e241a76ad2b8a661ac8232f2cbc1a8cbf526b43905f9cdc52b57aadf8fb6bb03181b51893ac4e9d384ababb6d34582f7e24e6ef2ecc8fbfd73f DIST express-0.9.5-src.tgz 766024 SHA256 e17250d62750560c2dc9cb579f58784b5076afb74088f36523ddd623e08bc022 SHA512 3a7360ffbe57f4f712b6db38d551d31384d995050a86238d79299edb12f0e7f5dca6f362b7858b5051ea2879af2b3559f78f9780d75ef2ef6fdad7398f781403 WHIRLPOOL 290772dceca2465f922f5d5fe548dc8fd460422589697173c58f98dc3afa2e91175fe1fa52e5f29458ea6af74c8da609776fa583bf5efcb2d5771c4c9ad51cde DIST express-1.5.1-src.tgz 931166 SHA256 0c5840a42da830fd8701dda8eef13f4792248bab4e56d665a0e2ca075aff2c0f SHA512 59cf6511a879311247c65334285ea056d571d4fd950aa6243041fa10075ff0d1ddd2afbcfe12e5f7f3e7cdd22fe37fd7f6b43ed4a8eb28d7a33d72366dc549ee WHIRLPOOL 2c75385b2a2ec8f7b77df760344affc108e827eb9f59014f08af0cee0ca8806beeba101d13ed8b43883a25fc9486bd405f402339f0e4e394d3895694c75a4e2a -EBUILD express-0.9.5-r1.ebuild 877 SHA256 b1242af3192914cbd60af84fa7fe9dd8809b11e4a8933ad5d2a39a2a4faac693 SHA512 6f3277de1bffa5855cf6db9c4733bb75420bc453f0feba464dacf51625d768ac23f3eb2ad3dd5de3389ae820371265085047d12224c08a05ced29d3b7f7cfe1f WHIRLPOOL a1e988c199a7bdbb5a2df654e3df22b160e973494e858893e832d5f8191ae8a115b4ebfcf479bdb4a0e433231eec58cb474d6684e58cf5fe6ba6eb14e47823e2 -EBUILD express-1.5.1.ebuild 737 SHA256 ceb5e7b903b346f8abe5f42d36b344885c654c4a0945c548b17673074f2d8bcc SHA512 23eb67f560b4b5ad76ecac73bab010a811363ae746c66cef13506e8fd2264f567bdcc283dc58face003bd3f63f077dbaf7d0b55616f50e2f55641a8beb58ceb0 WHIRLPOOL fa0e9212519a4baf133ed908209a2f25b99f14c4d83fa3ccc86a7c32d4e83a267281a41f7aa18d1940d9420cc0a66443a94c8541a62952b1efd41d09dc4dbb52 -MISC ChangeLog 2582 SHA256 c0df118069ef9ecd46ace790bf8ff2aeefb28e33b761c3cca7aefb532c4943de SHA512 571fe176297fed9f8fd2f01b1559416f471f7fb83dda5036fd5d7e082d8ed77feb51926f6aa9e414785da43ef3cf27ba219d5783ee71733f81c900169dce2b4c WHIRLPOOL 04a26d5096af267223c70e4416c76da60d897d3b7b3992788ef290699e2dbb7595dd2888a9d6a68b47d075c90ac057a1b0853a6a963e7532518c8806b6bc51d1 -MISC ChangeLog-2015 1224 SHA256 0bea782411fdecc57379bd8bc4958500ad4caa09ce82d4b0b7c2289f7a94d19a SHA512 816c7aa3f3d8936916c2e34cca498de37683558da6b8e3eb781240889dfffcd01c51939398b70ef835e76140d9c061c47a85142e0f96ba06067f8c7ae37e5c02 WHIRLPOOL 863134e26090629542ac08979f8f4f3c331481ca272b10cf63184c28dd9369452ede360c1db066abea748825fbeaa867ae8800fca5e518edc6fefb205fba670e -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD express-0.9.5-r1.ebuild 877 BLAKE2B 9b942dd82849a8f94b6ae542ec0b52608c0faba49a99b77d423658cd56d2763b09eccb3b0cffc4e58d8a54c11b61581e85ffb045d933111d9ab0b17afa8fa0bc SHA512 6f3277de1bffa5855cf6db9c4733bb75420bc453f0feba464dacf51625d768ac23f3eb2ad3dd5de3389ae820371265085047d12224c08a05ced29d3b7f7cfe1f +EBUILD express-1.5.1.ebuild 737 BLAKE2B a4d7d15d3e9d553c46c7ebbde640e1ef315c31925de8c93e3532ffc4113d11b2a08031d34edc03703c93c8a82141593f5e5d56228d8c125c8e8c8ee0f2aee248 SHA512 23eb67f560b4b5ad76ecac73bab010a811363ae746c66cef13506e8fd2264f567bdcc283dc58face003bd3f63f077dbaf7d0b55616f50e2f55641a8beb58ceb0 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/fasta/Manifest b/sci-biology/fasta/Manifest index 936de1abe1eb..ce4607a437b1 100644 --- a/sci-biology/fasta/Manifest +++ b/sci-biology/fasta/Manifest @@ -1,9 +1,7 @@ -AUX 35.4.10-ldflags.patch 1036 SHA256 21b6c290ca565c50376da61cd980f21f7a96598ea5da046294321d8d6be5d5fe SHA512 8136536c7f9887920a045dbcd04fa9d01dc0a3b22ed0a1771df715e288d6c889d87b0a6d0f52c947b54185f6a5e92fe902316b502074200a13820cac9dfa6594 WHIRLPOOL 35ff6b7fba2b8f16eb51795c48fd1636708155b1ad405be62850def9934a7d7556644ce808360375b4e658098ada81d7d89d2c53eb04f020d4af2aea127c8100 -AUX fasta-36.3.5e-ldflags.patch 2781 SHA256 baaa544d74ec1367875c96945fc5046182b6502be8d5565806b6c4cb81ae819c SHA512 5424bb8385def72ff75701c2da153f697520cbec82f36cbed8de0e98f93d399de660e79da7700ab0ff688fd5388cf9f42a30ccc4359335ae02042bf8cbb3aae7 WHIRLPOOL 1cbb12763b22e4424d953562b7b681ccb6fcbb58df0772a9ad73cb7c28892dae7afd09626fc275371c762eff73f143390b478ff84ad9d1f7f524dce77ff8a4f5 +AUX 35.4.10-ldflags.patch 1036 BLAKE2B 5e614e62a99f4ba5808ad33a082c4eb1fb4feb1b7031f69e42a833fdff05c91cf1197a8a838eb347f2c31c59c68536fbae9dad07293d3bd80bdde8f6263a90a5 SHA512 8136536c7f9887920a045dbcd04fa9d01dc0a3b22ed0a1771df715e288d6c889d87b0a6d0f52c947b54185f6a5e92fe902316b502074200a13820cac9dfa6594 +AUX fasta-36.3.5e-ldflags.patch 2781 BLAKE2B e6d4e0984b4dadfc9d38504ab215d769084edc6c79cfe641b6b3fba8264a40add1665027295ec4afa19d26277036bfe1a5103ecdf72ef91a1139542ac8272954 SHA512 5424bb8385def72ff75701c2da153f697520cbec82f36cbed8de0e98f93d399de660e79da7700ab0ff688fd5388cf9f42a30ccc4359335ae02042bf8cbb3aae7 DIST fasta-35.4.10.tar.gz 618971 SHA256 60616963093784d2e41ff9c125d68d7a43bbe411cdef8dc37ce922b4c3aec758 SHA512 f04268f0eea59cd40985c86597ab68bef40ee28e6ca914a7182c0edfe943ec8fb2a860558f422f210a4c03f3c34f36c677bd3971bc240cb87695826c755f5a47 WHIRLPOOL 87eb008bc507923ceaebe93c5eb2ab367ca184c0fa2304491ba8edf09e5f6eabe16a8823a1b6a11d5157355406157d1c97da9bd1e194dc26709188b995a386ce DIST fasta-36.3.5e.tar.gz 943763 SHA256 92f44a0e0e13bcd6782489f2db42044d7109a9071d775fb0435df24288be90c2 SHA512 ddfcae36dadd7e2ed5c8c8c0bda2eed077e9f6cd55e4ebf507690671af156358e9da4e7cb1406d2b8713c326c54a9d829fc25e668b16dfa6df48d18e3a009812 WHIRLPOOL 803cee2c7da8487811b6aa9776bfa737ab35c4de2f76887915ab285802a738cb073059f4122379512195bd54ad63db42c61059587b6a2aa34550774e57f9f5fa -EBUILD fasta-35.4.10.ebuild 1352 SHA256 43c59c1720195243c6b4114407f10651ac8bc86e8d695fa959ae6ad88bed6fbc SHA512 eba62f3358ef8553e61be08759202b941df00d7862901899cafe5fe4d76d1dcd8dcb25d0410720393db8263e3b9bfd5d9c627ca09b726c1a66b14a4200fc60fa WHIRLPOOL d2de9999035e0e6208f403883e002d00be7511b786a5c8e64f4b04df89253b679dc446748b2225892410fa05eeac94268fbd3fec7e4176824a501bca366055f8 -EBUILD fasta-36.3.5e.ebuild 1625 SHA256 fe3bbcfce5feadac083f70674b9c8c69b19cc4c4855d25907e3e884901600c6c SHA512 618aa434a8271332dc1042c731d6f19d99f08eb90cc156af3b855d8df9664d5efa62a40a043c031205a03e768cf8251d246e4e7b14d7ca14deb47678399e5797 WHIRLPOOL c3b2a2bc375b796493ea4a47ee74d6cb6ebe6be391272db799e7cdfceca401b1b171122a9aca4b6699ff1aa82dd21fffc7b897f7b99696242884feb4d86df298 -MISC ChangeLog 2669 SHA256 5117f39b304513d45ef77b698cbf45d6c4445a25ec7ea2546b747b0a56df7db4 SHA512 3c4786b769dfc165e1a2f158f258e753ea820d4ca7f284cc958bfddec7599a2f7ebe34a00dc4f66233781fb12d4faae1cb51e545da4e4be5fb713ad6c82ba470 WHIRLPOOL b7ee69bb74d9d8ba89c2d5925423b4e855ec2b6f2e9aa9a3b51051b247b285201acdb7f370e459f069b3ee770c2e5c0299615dd6461ffca0c4e363379cba7c48 -MISC ChangeLog-2015 1496 SHA256 0a0cbd3c826f7fd604891da3d3a5ef8afee3e7d61f843f6cc5af9b8981000b17 SHA512 20a918d0095cb7df79811d272df82439a4adedbe6af9045e742283a1e9a4885cdf1353aaa00bbeb6f6ab9c3e661890d7ba751021964a3af300634c45a3c71527 WHIRLPOOL 4769fe648579339bba258b023d63515ae40ce41f52847bff59e9201a0872c32365f6d103296a4e3cca3c92cac346a0fd83e27cb59462565762d378a77cedc04d -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD fasta-35.4.10.ebuild 1352 BLAKE2B df91cc22840301e1c0182ce7deb116ddeb468074050e9ce84f1e80ac1456de323aedc54d671616fa789eba71da321be86c58fa8007e0a205a0c6d8f83c17eb35 SHA512 eba62f3358ef8553e61be08759202b941df00d7862901899cafe5fe4d76d1dcd8dcb25d0410720393db8263e3b9bfd5d9c627ca09b726c1a66b14a4200fc60fa +EBUILD fasta-36.3.5e.ebuild 1625 BLAKE2B 20dd1cc003b8ae7a1cabbbcfa06f6968d6486f86751d08d791dca74e4365358f456f88a398b98e65a4bfa85d7220c6e64e91998d57c2b0c4d422c7d3533cb20d SHA512 618aa434a8271332dc1042c731d6f19d99f08eb90cc156af3b855d8df9664d5efa62a40a043c031205a03e768cf8251d246e4e7b14d7ca14deb47678399e5797 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/fasttree/Manifest b/sci-biology/fasttree/Manifest index fcba17331e2a..7914b54e9a88 100644 --- a/sci-biology/fasttree/Manifest +++ b/sci-biology/fasttree/Manifest @@ -1,14 +1,12 @@ -AUX CMakeLists.txt 948 SHA256 60c21f04ea3ef04782dfc0328e317b6d04197a45af4d15c5c43f4f87a1f82c44 SHA512 9858800bfce8d256ccb834a06bad5a5230f90f025a9c9b3c9aafe7244d219d66810530f6688e02889cdb67d6a9459d8e26cd1a9fcf2e8825278b31d0e8d51ff3 WHIRLPOOL edc50a85eaec6161924f38569c33ccd35170f9ac89e17741e4a87ceb350b165fdf6e118c20bfd27a02ec1e01aa76be8665908f39c531a292d3d1b706e6c1b25a -AUX fasttree-2.1.7-format-security.patch 783 SHA256 83e4b1b6de9fb5f8875a4d53ed274866bb34bbb36610b0f7bbda22ebea60fd07 SHA512 cabda061de75a1e1b34732946448ee08717f265d7fa8ea413f56eb8bad150ebde9f376a13591167a7786caf17a0d4bb1f8cb7176b74965a47f79b9608d32bcf8 WHIRLPOOL cec0331b56114bd36085c1a64b048979579984b769102358365e4c719b03b1fb6b52919f4397b97c424613811e4e1ef572f3e6fb595aa5340e25d6881bc46e97 -AUX fasttree-2.1.8-format-security.patch 783 SHA256 cd838048ce9b99adb462f75cdb56ec65274e0c96340685c736858580b38c2579 SHA512 9bbf66cddca2b6c202fdeeab4092036852cb1ebe132ebf4d96cba1bea75bb5668dd6ee97d4d020a4b7cf7111bee6d0c3004b0bd74ee4685ef98eeeb5e9a23eb3 WHIRLPOOL d20139d2ba391ed11924b70495d16fdf706171953f712214b5d0a83395cd97a0395c7dc8a6e586c3ee87579c1124c7599cc89e933ba684940909daa7eda11f2d +AUX CMakeLists.txt 948 BLAKE2B b2a5908a2d24533f474d399b97b8941fbbe392e2b078890bc2e62dbd232912e6bbaec25fbb31592b1015c8c4234178a34ffd9bd4815935d64ea6da3dd21cd474 SHA512 9858800bfce8d256ccb834a06bad5a5230f90f025a9c9b3c9aafe7244d219d66810530f6688e02889cdb67d6a9459d8e26cd1a9fcf2e8825278b31d0e8d51ff3 +AUX fasttree-2.1.7-format-security.patch 783 BLAKE2B 99ed512570ed98d83df2480424a32641e451e88f89e02f6387d7d176ed1a67ec673da21076abfebf9548adcf9bce4689a462a19aa28e076d48d9832b6862b222 SHA512 cabda061de75a1e1b34732946448ee08717f265d7fa8ea413f56eb8bad150ebde9f376a13591167a7786caf17a0d4bb1f8cb7176b74965a47f79b9608d32bcf8 +AUX fasttree-2.1.8-format-security.patch 783 BLAKE2B c400b89a17287817f82a8747082b3bf35d8097941c591923fcff073618fae0423b97fb5bc9a12a199acea0de61d451378beaf0070beb9b20274da81b936f2296 SHA512 9bbf66cddca2b6c202fdeeab4092036852cb1ebe132ebf4d96cba1bea75bb5668dd6ee97d4d020a4b7cf7111bee6d0c3004b0bd74ee4685ef98eeeb5e9a23eb3 DIST FastTree-2.1.7.c 383551 SHA256 da148297bb64711e43e38481186228496d418bb4ec0166e09df62a72248085a0 SHA512 e88916e6586885e095948e78e6654081f966c78fbf637cfdac01970f5337bfe5616efcd165fb5f9718af0831ff45047b165944f5da9c5931d9725ea6f49cb59e WHIRLPOOL c4b267d8c3d92f0e76110eed31fcbdb4c142a967c3df31ca30ef816716231e1a9867094d183173af28fc3e7cb9acba81a55d455fcb8833539b2cad0667683775 DIST FastTree-2.1.8.c 385231 SHA256 b172d160f1b12b764d21a6937c3ce01ba42fa8743d95e083e031c6947762f837 SHA512 39a7d284412a602208c2a5df3d0a9a30fe3a584f7f7788d741fb1463b698692017f47bb23f70046d0873e9c8fd27c84ec23f6ca48adb0594193765ac732e6559 WHIRLPOOL 31331c85584c2030f56955e79250c6d6c06147007c6dd10f324c207fdebd4a1b89c87dcce52e5bab6e8d89cc69656d95a51bd808f52b8d61f6d29af40a5d4976 DIST FastTreeUPGMA-2.1.7.c 95271 SHA256 199acc84910ca899dae9dd96d2ea133b651e76bbd855363cf620bf1b3cbd3abd SHA512 4d6a8e2cb28b8ee201091172a3baa59d432420839c6d2244b5fb8230ed9daa626b6bed22cb692393ca3d78b8f2d071fe18fbb4f9bdcdc47ef149c31e3f45546c WHIRLPOOL 538b44382137e6055452c901c76007b1c388a541c193c37f7baff26e59eb477450ce8acf7466d5debe0bc973fecc645d1f88d54f6f871670826bb151fd5b7496 DIST FastTreeUPGMA-2.1.8.c 95271 SHA256 199acc84910ca899dae9dd96d2ea133b651e76bbd855363cf620bf1b3cbd3abd SHA512 4d6a8e2cb28b8ee201091172a3baa59d432420839c6d2244b5fb8230ed9daa626b6bed22cb692393ca3d78b8f2d071fe18fbb4f9bdcdc47ef149c31e3f45546c WHIRLPOOL 538b44382137e6055452c901c76007b1c388a541c193c37f7baff26e59eb477450ce8acf7466d5debe0bc973fecc645d1f88d54f6f871670826bb151fd5b7496 DIST MOTreeComparison-2.1.7.tar.gz 13523 SHA256 aea482d47aca528026cdf86fc96dc59b7a9f66ea33b9e974f5c007b46335d174 SHA512 24d2247650d7728942bd1d987b548cefd65a16b433a3810876613e9fd1cff223d4349ee720b3d8d10a73af220c2c9f59a24d77ad34ff009325fe9f22aa35c72b WHIRLPOOL 7ed1009d622ce77c59cf79078a08a08dafb281e87a6ae99be7b7fba9451f2748bfd7a51036c041e3667ea8e29f7545276b799d708aabb7ea1988ea443f73f475 DIST MOTreeComparison-2.1.8.tar.gz 13523 SHA256 aea482d47aca528026cdf86fc96dc59b7a9f66ea33b9e974f5c007b46335d174 SHA512 24d2247650d7728942bd1d987b548cefd65a16b433a3810876613e9fd1cff223d4349ee720b3d8d10a73af220c2c9f59a24d77ad34ff009325fe9f22aa35c72b WHIRLPOOL 7ed1009d622ce77c59cf79078a08a08dafb281e87a6ae99be7b7fba9451f2748bfd7a51036c041e3667ea8e29f7545276b799d708aabb7ea1988ea443f73f475 -EBUILD fasttree-2.1.7.ebuild 1191 SHA256 3dcf70859370142cfdf2212c76a7bec530b440c7f6eb862688086487f8cbd178 SHA512 0f229a132f237f11ac0fdd15083745e71fbb5072fe58afcc1ed1d41050520d3da030e23f57ed50fc3c2460c123b5a4d5665242caf21408b5c032828e8fe2cc46 WHIRLPOOL 5f3d492775aac0917ca498e217fea3bc3de6eed8c91a55e5bbf4746c8e203a9fbeb21e2ba51ab8d6710620c340e2b25d764873b554dc5cb7404f4f235dbe921d -EBUILD fasttree-2.1.8.ebuild 1193 SHA256 904c1f11c30a54ef6749904cded02ceec9fe0c3259837645e148c6df0e707e51 SHA512 e14223969bdac00b28a2223ce500cf6acf9d2d964f9bb5e55b6ebd22fa453e88a8943d195c655c4f6c246cf1dddac7c6f06aeab7d8f4e35f596192674ca2fa3f WHIRLPOOL ea6b5f089e6cd25a59eb27b56d74287872dc17238089481781da480b76fe63a83a517c1fba3e2b2a21df9cccd20f38b01702a5af64baeffdab3ee18a6aea79dd -MISC ChangeLog 2604 SHA256 9d0e0f54b5b644d8e731a814d8825004c81801636acb4ac83541e766ff19bab1 SHA512 7e045f1d7f3ae8b88b103a3ad7ed2816357c76617d7be6c6b5c735ef4dd736112d385bff14ef75bc4d1570333aacf7c7a641ccc3674cdee455f55c71ae480e01 WHIRLPOOL 8b73fdd334955af4fc9112ed76b36fcc5519369eeac55548a7961e2161de541926c1ed5e923bc865c248579098ccdd8151acad6b2ead9a4fc7e0749135a246c0 -MISC ChangeLog-2015 1505 SHA256 bd24d5bdac6616a54937c42b0492276ebeb20109a33850b2b6076937db1ee53d SHA512 15c646ec4e0f55f8aa572926b7ca87babac5b7aec34a7121ffd0a3fd20c799f81d47e41198d79389f53bf32fe5882070e3d6aa1e75808945cb709a3e987f776f WHIRLPOOL feee169c62e088f5c2c93a03c4a74ebd5889209e056f3a9dea2763dffa71579b47d1067d09c43fbddc4d12575d88d6a8f1c9e9415df57d36d35c5530e78fe5d8 -MISC metadata.xml 416 SHA256 f0bcc143c0fc170b2a4406f972f9166d5b561d1c261575e1e11fae6741c88785 SHA512 35edf392bfe7f9495120b6f156d8a37262029386f262b1e5c4d12e2b0436e78c8ba98db3d13e0f006909e45bcc13aec80e775b38efd7de1ad20b78c74c21b421 WHIRLPOOL 1673750cd290ce87f08e50b824c5073bf4b18c65c8cf52f08aad634590fd3786a875ad39f13a36fd002ffbbda135504c444f5e7927b83621642ce8df592f3c98 +EBUILD fasttree-2.1.7.ebuild 1191 BLAKE2B e1b512b81abca6a7b644aff2e26b22573bc68485439143fb1e6fd5bdd77dcb939e2f241c8c91d8b44d51a3b2351fa8a718e6e120a29772d7042ec768c06a7345 SHA512 0f229a132f237f11ac0fdd15083745e71fbb5072fe58afcc1ed1d41050520d3da030e23f57ed50fc3c2460c123b5a4d5665242caf21408b5c032828e8fe2cc46 +EBUILD fasttree-2.1.8.ebuild 1193 BLAKE2B c80c87cb452643db90a1c2da1db1485182f5ecf4db6800cfb848bcaa8d9fc480f1436e842dadfc7f4ace1fd2023820c027c0addfa85e75303584fa29483c3ca6 SHA512 e14223969bdac00b28a2223ce500cf6acf9d2d964f9bb5e55b6ebd22fa453e88a8943d195c655c4f6c246cf1dddac7c6f06aeab7d8f4e35f596192674ca2fa3f +MISC metadata.xml 410 BLAKE2B 92ee74c67cebb5ac4db5217355e6f01f893387d7fe0da1dd5048207149e385927f05c324d8299682b42bc7ba895e1f42a0ee5d7e9442d03d33ea3511dc704ffd SHA512 6f380e2353b1a0ff33c75cd593d2cf3e12d56c99478e7a5bdb37459b10449ae88065d265820f2a9c6d61d53a295ed1a4e18b8595e23c137c9788c658080caff0 diff --git a/sci-biology/fasttree/metadata.xml b/sci-biology/fasttree/metadata.xml index 802ef76f0cb9..674816fe4822 100644 --- a/sci-biology/fasttree/metadata.xml +++ b/sci-biology/fasttree/metadata.xml @@ -1,14 +1,14 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <use> - <flag name="double-precision"> - use double precision instead of single-precision floating point - (2x memroy required) - </flag> - </use> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <use> + <flag name="double-precision"> + use double precision instead of single-precision floating point + (2x memroy required) + </flag> + </use> </pkgmetadata> diff --git a/sci-biology/finchtv/Manifest b/sci-biology/finchtv/Manifest index 1ef2125ee6a5..26efc9b978de 100644 --- a/sci-biology/finchtv/Manifest +++ b/sci-biology/finchtv/Manifest @@ -1,6 +1,4 @@ DIST finchtv_1_3_1.tar.gz 6706911 SHA256 03fccbf1ab09b571bbf55d0b71dd86975513b7a6c8d54795055a184b4eda8858 SHA512 813217a6d44cbd60fff061da94f70adadcc803b77352b278246711bf1b952b592a0fdb6bfc9d74264d896cb816078e809bdc633981d4009c422f59f74aca5bc8 WHIRLPOOL 3b6de1673b69bfb41f1416e7758ccafcf97f10bd4f348a88e8498d04c408caf2ac316d8e1a20bf1abe2d6487f38c3b9875af54ecb1d2b1a2ff813b436de90988 -EBUILD finchtv-1.3.1-r2.ebuild 610 SHA256 a9e1b3a239563a96284b419c6178cc008c3b7c940f41cd95d7ef555b8d21c82e SHA512 693cc060e91d2ed1ca9d4bc6ff6baaa9a3afe1a876d83d79e3cc3d4c416f8e7ddc878696e890e0b4e660ed5c017c0402bb8247e1b4d6d819f567292b5aa168a7 WHIRLPOOL 8db1277c7f009113280624c4d12df137fe5f72076ada0fc1a2520c1089116946dd532c74effd5be6db50abf3b0b760a1dc84a1e71b318e6273b54221ff4ddddd -EBUILD finchtv-1.3.1-r3.ebuild 694 SHA256 aa6295586be4b1856e3bdaabc3d94e0a82bce1a76cd725a4fecd7ac30bdb3baf SHA512 0772745c5d1d529def77475c8fdc90321c029dbd0b87ea5b65db65cf29485a8e59b2c0aa2003e6c8d0b7b2bffdb5b988d1452da7a7d32775b539dd2676f59a96 WHIRLPOOL 320067ce62cbf81fdcfd90aa8f58e18b0a7979ec32e730b59e4b71502f4d50c3958700560d81301cff42eae2aa8294f04995cc1f041cbd6e67f90907a2210420 -MISC ChangeLog 2557 SHA256 9cb578f10ea6a884de87497e8e52e038a88b1be249ab017f3152da7a0766f2e2 SHA512 9e6e4ad0f94e40e02fffc39ae671405ad697069df3714d5d29ba33547118fe47a34224c16a31ab595015c366f6df7857228ca5f59b8f31cdc4ac9e97ea7a6a55 WHIRLPOOL 4434abff65bfb8bf770f401aef910139b518b33f9267a8e3855637a045de33c41b4baf77f9b0318bdcaded68d18a54cbbd93b6be54865f50b000c75ac8a83a7e -MISC ChangeLog-2015 1543 SHA256 bb5e832b6b77f943d4b4870c90e3ed2a28eb0af68cc2f876ea277a3ab7b45b42 SHA512 225709a2660ec56d6fd26f857f08b2530c1f4016c4fe7ffdc30f7b9b7d8071d2a67f8a158b8b57029c59ec035f06d15ffcbec26508d2a04a7b2c80922d2414b2 WHIRLPOOL 6b6d61b912a9dc1abfce7bea0108cbee9fca5f9190f7272beb8212dc9eca1230e7f41466ddda08b552e0a203662032093ab5e054b09905dc9b43bc9ceaf4e8f3 -MISC metadata.xml 374 SHA256 f7478805795c5077e97f29bfc243d5960cf21ff90717afaff74a6149572d29d3 SHA512 5e1e1540a94ba73446163db04367641e83cc222dec5e062ff8159b9a16a256729fecf19ee19c9980a2a88da6b39e4d21334d7bbba8526c34e05d22c1e578b16d WHIRLPOOL 77677573f36666fb1c9cd8bc3a74b4dd408237962fdbdfdc526d410b9e48c29584a146ab3f0c91dfe1a9358cc853b39f83bc840467cb56c44dfbfb07b2a780c1 +EBUILD finchtv-1.3.1-r2.ebuild 610 BLAKE2B 4c58fdc546782232ea8c1fc5937ab83ba36000bbea56b83d813a9afd52cdc9caff0b946235f9d452c2ee287d11a228697c8a972e2bbbdaa94c640e4ac40c82eb SHA512 693cc060e91d2ed1ca9d4bc6ff6baaa9a3afe1a876d83d79e3cc3d4c416f8e7ddc878696e890e0b4e660ed5c017c0402bb8247e1b4d6d819f567292b5aa168a7 +EBUILD finchtv-1.3.1-r3.ebuild 694 BLAKE2B ede749140addd096bd6ab449b94af6f204b8970b4978d49971ff1c46d3cde1bd225a8792ea76b68272ca080ac08b8d989e8cf704b09797b3b5d5bad0ec0c47e3 SHA512 0772745c5d1d529def77475c8fdc90321c029dbd0b87ea5b65db65cf29485a8e59b2c0aa2003e6c8d0b7b2bffdb5b988d1452da7a7d32775b539dd2676f59a96 +MISC metadata.xml 374 BLAKE2B 1aeffa98b6c6a1ebf19451781a691992a8662bb1de184ab26bac1455d3dbd5ea182f7a7d44b8dd7b943dd400af365f70ee0693921a5216783f201078e61157f3 SHA512 5e1e1540a94ba73446163db04367641e83cc222dec5e062ff8159b9a16a256729fecf19ee19c9980a2a88da6b39e4d21334d7bbba8526c34e05d22c1e578b16d diff --git a/sci-biology/foldingathome/Manifest b/sci-biology/foldingathome/Manifest index b6e219b93684..e3c2b210070b 100644 --- a/sci-biology/foldingathome/Manifest +++ b/sci-biology/foldingathome/Manifest @@ -1,7 +1,5 @@ -AUX 7.3/folding-conf.d 339 SHA256 016af8d64434d3a13d336055347dcae8e486dedbcfe66d288c3b961e662175a0 SHA512 6fd10dc938262c05831e68176e93a24869bb6991508bcc48ece487b701788026561d073025bd347cd77ede13ca26f6b284861f30b07becf72ea77e4db22867b3 WHIRLPOOL 1c9c7acd3ea0c9d78bbf73563ccbf1bb014148ce44d788363b94e94f4cdb20b32643cac472378610e61b2ad879df0eb488f7596642d0ebecfcb536e2d4c4a906 +AUX 7.3/folding-conf.d 339 BLAKE2B 93a0b3672777ad737ce27694aaca547634c375e180ad3c28c3adb9cae2cb1c054ff9458ee1fe04b70fe9841ae67d41198bcecfc4826d05d5de8df2759bd80910 SHA512 6fd10dc938262c05831e68176e93a24869bb6991508bcc48ece487b701788026561d073025bd347cd77ede13ca26f6b284861f30b07becf72ea77e4db22867b3 DIST fahclient_7.4.4-32bit-release.tar.bz2 4313096 SHA256 81f1a1d161d1302a08638f23ebcfd7a163046a5427c49c70651fc8e2f6d8d60e SHA512 6a660b99c97c83518863ef671ae760b15e3ca33cacfde6485c11b29e98fab15a9d27833ba307c95b39e6ffb7f271cd0c7a47060ec5b8614961e9a5ee46494b3f WHIRLPOOL 6c6c25446e8e118b7931c58643827739691bcb9f1ae67461e6dd72cfc8556f86d49c533669897f6711537ce920680c23d0d496ba75a21047a88708cc93fec314 DIST fahclient_7.4.4-64bit-release.tar.bz2 4451080 SHA256 4642ed9b5a06c8ab63106293f6a5ce547f6a96efe85fcd3b8c19d9065ab582df SHA512 40fc93c4ec682342040a4c7a9fd92dc9d1727ef60af6d3fa3191575719c7e595868f289727561f6902f8374061f7b51dfcf565ac047706336ef4ae9a589ff9a8 WHIRLPOOL 4feea83f1e826430943dec0495ce7658408cdaa4671bf1e4d1ec338991dbeb1599f25a4835f3960bea135fe4af7c4e415be6767ea5a0a13f63201c64e6ce6f6e -EBUILD foldingathome-7.4.4-r2.ebuild 4130 SHA256 f99525186722a9bc768c8e426c4e7501854639330ee173eb61112fda0822aa4d SHA512 3bd334277c1ffac0e26f4e773208441817c45aa9f40bd0cd169fc7cb782e8cc30058ee34173e60bbc0c5c18015df9b0714735044ac37c36131e8cb9ccf8e9608 WHIRLPOOL 787cefc90939ae55ff78dde4df59cd474453a3070fc6c62cacd9341452a239f4955bd1b6364d57ece93e40f8d9f9375c04f30c452d8bbcaec1abb9e256f157e2 -MISC ChangeLog 2721 SHA256 2cf6a61222242249e580efab7a81640eb14fafd2461e1861e9c132ffc416add8 SHA512 9df329673c65ef19aae34c4a47a3324a8e83020ad7d137306617a37a094c405f8b5499b6d516c35a02899a98651f528b280d7ddb69936de425ff54aaf8369c64 WHIRLPOOL d4e06db9323f600c6ea0519f638a02adc2006e2718c1532e64ca36e17ac329a1434135f34207a71b11ff5d2875d99c05f437615885834f450cf68b80d5a4cae3 -MISC ChangeLog-2015 12604 SHA256 23253cc951a6ff4145e9d31d315dbcfd8d4c39ad75eb937acab9cc8ca0158e92 SHA512 91c63723b0aedbe1fbb13dcaf742c17787049d9c1cdde8fa42546ab25f7cdb218763d59af711e2b9a17e373a855f01f758b70fb5815aaf3fc81a18860b79d5db WHIRLPOOL b9173736017ef0c0cb24067bd71a9dd4d6392505819906501a79454e974d567fa13caf0ffc53d706b3152079f5add78424e580783d97082eaf2c7b8e1e5e4dd3 -MISC metadata.xml 360 SHA256 06c506cebc3bde217739669360c8a10d9dcd462fa083cb296f8940afa5bc72a2 SHA512 687f1516a8ec80270fa173b0a7d7c259f3f02ffefa69d3175b72e170bd11aeb786563edb43214390a83b6b61b1231e2734124e50bb2a523d1a564bc3b143f00b WHIRLPOOL fe6f9a67c761ac9fa0bf84d40bc349d57dd2c8aba1ae0cd1ea26078298db9408e2157093158cb5503a33c4fe2614aac1430a9279f852ef162a3949a2183f372e +EBUILD foldingathome-7.4.4-r2.ebuild 4130 BLAKE2B 015209c4b41f95607e9ada0c8a0c93efc57980704226ca08f9b88914d371d6f3eabfd5024b0a3fd44f0619231c998fe3d151f1905fa5d7fad1304e4f0c961009 SHA512 3bd334277c1ffac0e26f4e773208441817c45aa9f40bd0cd169fc7cb782e8cc30058ee34173e60bbc0c5c18015df9b0714735044ac37c36131e8cb9ccf8e9608 +MISC metadata.xml 360 BLAKE2B c0ef2b11cc9e6498a420dcd2e6c83ee71f7e286c3e78218257c56350bd2c0921732d48cc4207a31bcfd965a4a9dca65e9bdc4d62831dc430e86541d36fc691f8 SHA512 687f1516a8ec80270fa173b0a7d7c259f3f02ffefa69d3175b72e170bd11aeb786563edb43214390a83b6b61b1231e2734124e50bb2a523d1a564bc3b143f00b diff --git a/sci-biology/gatk/Manifest b/sci-biology/gatk/Manifest index 0bfa7d0cfa84..45d51524d958 100644 --- a/sci-biology/gatk/Manifest +++ b/sci-biology/gatk/Manifest @@ -1,6 +1,4 @@ DIST gatk-2.4.tar.gz 9106774 SHA256 db0be90ef5182866a1f936742fba20b317ce582556e19acb69de2a8894f7383a SHA512 9050fc2024d0b3c9a6b5617787831c0496276bcd7318a872f6c1128c31fc31c6f59429a1b189e5c2cc740909b42d846b5e041f8626b03af3a80442294db34ace WHIRLPOOL 1fa7a73f317db82c313ea112ffaa6466c2b17384f1ad8d06c74a3f4764dfd822f036cc2dc99890c157fc2c32ce299a4a7d0c73cafc72dd7ad955d75053745b2c -EBUILD gatk-2.4.ebuild 914 SHA256 2520ab79fd82f6f22b5a70ddecf0ca27d368dfae9e8af55e8781ea97d4230af5 SHA512 a1a6fc27407bbc13247e866ed2dbc34428009091bf85e73776b5a47a95f8daca976060ecf092c4a68fee8afc1068f10aebc743e879b837b8ce0cf8ee461f6b6d WHIRLPOOL 53b8219fa5d5845ef4a1ee46e54d0d2bd82377284dd58e3d879b83187f72a2cc97072284ce7c8ad42154aeba1e3367759f966b6a859351dd94e79504dc8c50d5 -EBUILD gatk-9999.ebuild 899 SHA256 3951b5deea9081f8417024f976e30268d469b3636feda97b30957485dff8fb1c SHA512 1bffd684f48d50a84d4c0c55f6ed8ac10bfe7ca93d35ec32d282922ad8f1bdcee5aee284c4202cb547b9a332c3aaf32b4ebf5f4488b83856a9ac11f67f8b36a2 WHIRLPOOL 22c0b9c3c4c2ebcefc6c8be57097be69a93408ddbcea34f4051c5a00367d83bc2b6d366eecf5e3b881ac4dc5da25cfff1ba54ae9c6d6befe7d02e7812f9879d1 -MISC ChangeLog 2986 SHA256 48aba811073c7fd29bc04e07796c430290baa81f5ed6a7ea090cb2ea552df3a3 SHA512 b767dac7a1ce7d97f4e698684f4ec427e2170a9f2296d67b4ef768173377e169536cee95377bac4d2bb8640e23da887044c1bd1f8da02890e955a6a400970755 WHIRLPOOL 6a43a43136ce1e1bced58b6fca10e17ec23a21f7fd6c7c37e20c893ca4610a266f69071a4c1588eff7660adba9006633b52e6c8b38250975c190463866f61c79 -MISC ChangeLog-2015 1270 SHA256 9aab10f16c8e6afe3e4ae601f67c8effd9f1aafa2686c27840afdd359ea91f44 SHA512 02f5130b2615c68a952a5374f0401535e0cb4a8d7aeb8b420a6077caae8b6423dc480f9b88aeabdcd21ffbb9ad6064ad2b4d498827f42fdc83368c4ac848e035 WHIRLPOOL 53b1dab0452dfb0bcc7550ac3e16080ac7d8e647b61b02dc36ae10571404eca4198379ae84b60a3dc528a14b722c52b0159d8ea2e0770d32167fc2e53fa3deed -MISC metadata.xml 349 SHA256 4a02ed79b669b9458e55ad200851ea6b35f5af76b3a867df5fa3661e265eceb3 SHA512 1605fb041826c7197edcd3658343ed3ac50aea7dfa53262700b9f9e1a45ee81df501e55bf1e8417201f0f2709b6b6e29bb6e5036b7c187846b4dec5e89903f54 WHIRLPOOL 2ffd8a0b69eb6d47aae4b65e5f23f4b7149f518b3e268743f44ae2034fd526aa82530369a2503fcd29819d19a729dcaec7e6ac9ea3f8387593b37ef7feb4fafd +EBUILD gatk-2.4.ebuild 914 BLAKE2B a289d4f4ed48d1b522ae6928dd0535991a18f9d3396d15856bf231923fb8b596e95e662d7a719195563f6caed0c014c96a800dd4f3cebf88a18122cd9d67e6f6 SHA512 a1a6fc27407bbc13247e866ed2dbc34428009091bf85e73776b5a47a95f8daca976060ecf092c4a68fee8afc1068f10aebc743e879b837b8ce0cf8ee461f6b6d +EBUILD gatk-9999.ebuild 899 BLAKE2B aaafb718d986716b9e9e27175da83869bcad23c0443c258d3109d82b2c171e658c481347c1362c52f97713da959e8eeb36b6ccd6316e1bbff7fd102810c40db5 SHA512 1bffd684f48d50a84d4c0c55f6ed8ac10bfe7ca93d35ec32d282922ad8f1bdcee5aee284c4202cb547b9a332c3aaf32b4ebf5f4488b83856a9ac11f67f8b36a2 +MISC metadata.xml 349 BLAKE2B 277c979d19162d54c5a762e24fcc90d6fc043e5ddd315824b1ccc2376354db4169690933e9d9ebedaf8589636066bf5b32a646ca28892615e8626d7a8d3c43ac SHA512 1605fb041826c7197edcd3658343ed3ac50aea7dfa53262700b9f9e1a45ee81df501e55bf1e8417201f0f2709b6b6e29bb6e5036b7c187846b4dec5e89903f54 diff --git a/sci-biology/gibbs/Manifest b/sci-biology/gibbs/Manifest index a059491bd198..7fc9f317fff2 100644 --- a/sci-biology/gibbs/Manifest +++ b/sci-biology/gibbs/Manifest @@ -1,5 +1,3 @@ DIST gibbs-3.1.tar.gz 563300 SHA256 e8bd62b7d2580b00fc0cdf32ed75ac1ffac29747c75227269a75fd587ba77b69 SHA512 b1ffc0d0c7debaced3c3d850eb7d2c42e13358d1e7c6ff5e6be0273446edc50bd655c52c5ae904a9054d47d7a48abd54a7684534ba7681375b657ad77fb8cb52 WHIRLPOOL 9d8dd711d54a03163facbff197db7fd5406a4c4a47c542e3428113945e0bdf6b45f0a48296dde9ddcb32e7de6ae2794e8a81151bb0d21ca34be14c7b6bf4ce21 -EBUILD gibbs-3.1.ebuild 1080 SHA256 f9fa066bf6ec09205f6577af5f187bd545606c4f0b3866f1a898a604c33e9c5f SHA512 d07fc647931b6d8c0634a4d089429fade0f3d3262e0369236420963ba7dd6e3450a66cc0d4fe3ecc884a67e6aba8322d3492fc7a8b7a9fa8b32813e3973bc1fb WHIRLPOOL b605f4d794323c9ab2bb09fbbdb1155198aafb1109c640b463f7e23ad4d6ac82428624e22e84abe75fe414969d07f3c6b1687a7da48b831fbd0209f90b3b2734 -MISC ChangeLog 2439 SHA256 a7e03ccdd598edff2c7eb257b11e4e6d9da006e33beed548b71772709bf13580 SHA512 30db60a8820d0f8c4886a74b81f25a5bf6dfc9a90a11336ffb2041aaa3e38e4f7a31cd24e84ff6161a561a105ea80c0512264750c1b90fa4c364860b2bd66480 WHIRLPOOL 080badadd8d472173308c72729e606dbe4daac5db4946a1db3e5f8e90ca88ef0c1f238d9e3f7c6f00515c69c05ca24300c4899971cb45654594cd53e848e66d9 -MISC ChangeLog-2015 1749 SHA256 b3dd3175ff64335c168eeedbd56c9442d9cdb4fadc70d41b02593e432a0899fb SHA512 1ed351dbdb14799f4de91000557550a3131491a8e256f71c338cfd3fdcdea5afa06791a67497285363b50eedff64d4516bf439209e3b4cca3920d2e4f95b9540 WHIRLPOOL b9c5d56102b24599f983f4955c36a376b0770251935f7839ee72d08b650f71e3dfbde3c8662f546e7d5a3c1913c11ae30b790c030f2e4a393a4831e5ba9a46c3 -MISC metadata.xml 483 SHA256 365570f5052119268076375e196e23917708f6dfd4108420b6691e80a3642953 SHA512 3f86f0f0f673f78c65187f282c0346fccab1102a01869811afd73a6070a3efa032ff9d427a57a9e8a9922cdc055a33d6bccb771eda1196d6667b3076035fd077 WHIRLPOOL 1472e67be1e31b00d9be39c59f6b8c9f1a6eadeef9d9c7f1e56e94dce60ac3dc5fab021e1fde5e0dc35f193495985df24fc191f018f49dcadcffd6de87c2f3b6 +EBUILD gibbs-3.1.ebuild 1080 BLAKE2B 8b300d04feca4973c43a787410f19ff6ab78f5bb18d7e073cedc88c9c4c96b476d27a487a3b5d64ded499ac1ae60a21659e4023fba7d4a62368fbf05882edc33 SHA512 d07fc647931b6d8c0634a4d089429fade0f3d3262e0369236420963ba7dd6e3450a66cc0d4fe3ecc884a67e6aba8322d3492fc7a8b7a9fa8b32813e3973bc1fb +MISC metadata.xml 483 BLAKE2B e5a503d65b225af960b42424b1e2e451ed0596240e15868f04c429920a7818333819abbb21b0340cd4ec9ddbcc23cc272663bc8451fd1ab11bf6d6f17e4eae2f SHA512 3f86f0f0f673f78c65187f282c0346fccab1102a01869811afd73a6070a3efa032ff9d427a57a9e8a9922cdc055a33d6bccb771eda1196d6667b3076035fd077 diff --git a/sci-biology/glimmer/Manifest b/sci-biology/glimmer/Manifest index 3d68f9533801..67b1b60198e2 100644 --- a/sci-biology/glimmer/Manifest +++ b/sci-biology/glimmer/Manifest @@ -1,13 +1,11 @@ -AUX glimmer-3.02-glibc210.patch 799 SHA256 6b0655e796a938990c29070950b36e861bdb6dd3ee1a0ae962590585976e7c5b SHA512 7a6b05a9b626dbefdabf4535026077b6259747cd2603847e6aa7fed991d456d87bc658ca923959fbdd2ceb4e43e096d46925946ffc135277794a1a6399433a1b WHIRLPOOL 797232ac343731e37800495a50bbdb4c254d04c52ec9ad5b3e57b2ad623bb93c4024fe150f7d8bc2dc4f0d0a83cd75d511d985a62bf4a02bcb04ec813528c606 -AUX glimmer-3.02-jobserver-fix.patch 433 SHA256 19f45973fa230874274d779b03aba73abbecf1344d4a0d795d70256a82036e15 SHA512 51bb9c5223a034b4d5d76df33528172d8f642d8fac0d51a1c4ad1be74c253a4859ed87ccad219bf5cdbcd1b5d4684061ebd91751c7b213767e1c950af13a430d WHIRLPOOL a93193e48512a0cd8c6996d77ee8f1fd91b18cf00e6c99ec6c59dc9953bcb5ee5a90180b317ffb99337666e451da91f77f14a805f43026c1819ec596bb1268c1 -AUX glimmer-3.02-ldflags.patch 2057 SHA256 95d391acdbf6d84440c2f3d96791e9f97776b7a248c9546738cc9df88711a28e SHA512 aeeac4ee64e358c932a91c4b660c83f8afbfb3ef1b292c9cf8598c56d8645f0d820f4bbc545319e91fe2e65efa5d3aec22f381f75e12aa1574bb7a3b854df6a8 WHIRLPOOL d68752a5c3f78195bfabd116d19ca22ba90af7b817bfa29b9e0cc5614391e32cc3dd8cdd72e3ab642f4b52c48305ed8c7ab32ed622826b720b6228617ed682fe -AUX glimmer-3.02b-jobserver-fix.patch 433 SHA256 19f45973fa230874274d779b03aba73abbecf1344d4a0d795d70256a82036e15 SHA512 51bb9c5223a034b4d5d76df33528172d8f642d8fac0d51a1c4ad1be74c253a4859ed87ccad219bf5cdbcd1b5d4684061ebd91751c7b213767e1c950af13a430d WHIRLPOOL a93193e48512a0cd8c6996d77ee8f1fd91b18cf00e6c99ec6c59dc9953bcb5ee5a90180b317ffb99337666e451da91f77f14a805f43026c1819ec596bb1268c1 -AUX glimmer-3.02b-ldflags.patch 2057 SHA256 95d391acdbf6d84440c2f3d96791e9f97776b7a248c9546738cc9df88711a28e SHA512 aeeac4ee64e358c932a91c4b660c83f8afbfb3ef1b292c9cf8598c56d8645f0d820f4bbc545319e91fe2e65efa5d3aec22f381f75e12aa1574bb7a3b854df6a8 WHIRLPOOL d68752a5c3f78195bfabd116d19ca22ba90af7b817bfa29b9e0cc5614391e32cc3dd8cdd72e3ab642f4b52c48305ed8c7ab32ed622826b720b6228617ed682fe -AUX glimmer-3.02b-rename_extract.patch 9286 SHA256 275f783f675729e5b39bea26e9a506dd2a1b675ef20f9a611ca50cb94b1ad272 SHA512 b5c08ba7ac973e723aeb8bc8808f69eded90b1e59c9d14804519d1d689e820193bf71860026642b3aed049881289c651f9cfd45bc05d53d73a2e9ab891f9b342 WHIRLPOOL b5cc7d1d3734fc373c2a96d82bbcbb2a531bdc8040a7543d0ffdfcc9f4889ba9c89854ba4f99f9b4c1be30eb7a477530ee707bfadcc4ef180b1d6fcda26e7334 +AUX glimmer-3.02-glibc210.patch 799 BLAKE2B e9c09d46982314f5780d5e958ec27f7b71955a1fa462f8c8086ed1ef36cd940742af897c0e0528101ec86d337ba30dfec3df463410748a3488b9a1f2b76c3f4a SHA512 7a6b05a9b626dbefdabf4535026077b6259747cd2603847e6aa7fed991d456d87bc658ca923959fbdd2ceb4e43e096d46925946ffc135277794a1a6399433a1b +AUX glimmer-3.02-jobserver-fix.patch 433 BLAKE2B c337abe08b47e9cdc3ea600e0ebea9b168ba0d6dfc087f1a3c1865583df148a126178acb9418fc330cda48152b5ee56e827efcaaa8b1c0d7c2810854c2738e2f SHA512 51bb9c5223a034b4d5d76df33528172d8f642d8fac0d51a1c4ad1be74c253a4859ed87ccad219bf5cdbcd1b5d4684061ebd91751c7b213767e1c950af13a430d +AUX glimmer-3.02-ldflags.patch 2057 BLAKE2B 1333aa5d94d218dfd7f986cdea3f7e5c4485e1ed3a3e0ff970b113b686035c3f3da3a3b7c2b747502ea772413f19cdbb15bc5988a26240eab7b380b7a8426ee1 SHA512 aeeac4ee64e358c932a91c4b660c83f8afbfb3ef1b292c9cf8598c56d8645f0d820f4bbc545319e91fe2e65efa5d3aec22f381f75e12aa1574bb7a3b854df6a8 +AUX glimmer-3.02b-jobserver-fix.patch 433 BLAKE2B c337abe08b47e9cdc3ea600e0ebea9b168ba0d6dfc087f1a3c1865583df148a126178acb9418fc330cda48152b5ee56e827efcaaa8b1c0d7c2810854c2738e2f SHA512 51bb9c5223a034b4d5d76df33528172d8f642d8fac0d51a1c4ad1be74c253a4859ed87ccad219bf5cdbcd1b5d4684061ebd91751c7b213767e1c950af13a430d +AUX glimmer-3.02b-ldflags.patch 2057 BLAKE2B 1333aa5d94d218dfd7f986cdea3f7e5c4485e1ed3a3e0ff970b113b686035c3f3da3a3b7c2b747502ea772413f19cdbb15bc5988a26240eab7b380b7a8426ee1 SHA512 aeeac4ee64e358c932a91c4b660c83f8afbfb3ef1b292c9cf8598c56d8645f0d820f4bbc545319e91fe2e65efa5d3aec22f381f75e12aa1574bb7a3b854df6a8 +AUX glimmer-3.02b-rename_extract.patch 9286 BLAKE2B ce955f8f721f8043fe2beed82b7676e6503da20bd9a4cc556e1e29fcfcd9ffdfab1a430a98ece99f13a03241771f7b393d7c7290bf1d5c6652e67bdc5905950c SHA512 b5c08ba7ac973e723aeb8bc8808f69eded90b1e59c9d14804519d1d689e820193bf71860026642b3aed049881289c651f9cfd45bc05d53d73a2e9ab891f9b342 DIST glimmer302.tar.gz 5637075 SHA256 a1e422ee56f495f9f99e1741ba2043f026fc8182afcc47cb20cfd2d989537221 SHA512 c28e5902bffab00566560fa0bcf61909921932935f8298f098361aeb58eb67a40403c23709cf5075fb47dc87bcf54e25572840f110bb15cd21325a072050407c WHIRLPOOL c3eedb4a3a65043a69d632360608f04382117b8f7f3718eae328a1aa14f9f5d6d9ae6f05e0a83a09af5eb9e6b0c7b0ae26cb820813341aa5d7fa3f6002938ce8 DIST glimmer302b.tar.gz 5637975 SHA256 ecf28e03d0a675aed7360ca34ca7f19993f5c3ea889273e657ced9fa7d1e2bf6 SHA512 00d44a02a8099ceac4b4d2a1cd5d69cc2b787942bb87f612cd63edacf7e502bc9a65cdf9b9270ad789981a84c940cc01e187882d21d2c9de4dcc12b492b041a6 WHIRLPOOL bbce6f57546e6cc77801ac7f5e783510feafc2e120a8727e848a95dd9e2d966538e56cb7be597c2a463d9b372c8586a389d639e1377708a27bd56f81b37fea1f -EBUILD glimmer-3.02-r3.ebuild 1354 SHA256 9f2d65a25c543e474a289594985fecf3c6269f3281aaf839092f81d22c20e0ce SHA512 c2930627e031436d36b87ac8ec80f672700faa91db3aba175e428e9190ae8129a66288c08f10e501e4c4de98fb6a9aebdb46c7300c0ad6b17768a6d1e53161ea WHIRLPOOL b70962f6b2012366f2d0f1cc3da1d52311e435221e1e0fc851b9e0af70dc60563785e9373935a956167bd3c5d83b151a13038611d30a0eb40d5c44603568f266 -EBUILD glimmer-3.02b.ebuild 1700 SHA256 bce6feeb5858c7678d8f31968c08e1ccb251d580d81e4d755bbb5cbd4d4af51e SHA512 f66d205a926c198c92a8798cd7cdf20bc9620225fc67a20d097b70e08db995c05c2ebf9e7d760d123e5e9dee8c11b862070547ed1a751508d7b07d86ae983062 WHIRLPOOL c6e8335d7c5d3847f17284d505d4fd3281b57f855c646c1ed6269344588b0cc09e3c1cf07b12082dedb2aa33391960a1a3970b75642c3841f2583ec48d7ed77d -MISC ChangeLog 2727 SHA256 5076134d433536116e5b368869f9a4a5edef27a97d45ad0389e166437045cdd9 SHA512 94f62785b5fb5059a090fdb9c3fc862df6011ed9efd3940d0068169ab9fb84bd882c992c3fe64a4044a9c76b90f6ece699a9078c39589fe3ae9444d7f976a7ff WHIRLPOOL 85fbf73be715d4fdaf2e6278e3e7c3517e2349bae771439298cb5614102a782d94bb20b2b272a31cbbc52d6b0e0282101d0cc0418a1534019c4d1c8766741efe -MISC ChangeLog-2015 2304 SHA256 d33edc8f014290bdadb5508d59dd3a3b9fe115aba78d667bee1312034dc168da SHA512 ed293293a8875e5c31a515e8ee1c1bb1c73774201325280382fbb618cb6c6b86095715c6c126e1aa5de6b6a8bd55709e3a473b5750b4bf8ee081047aa90e2572 WHIRLPOOL fae3fb2318dbdf875c4c507b18d7c0016aa3cfded21f16236804ddb012e14053fb52b4541dad3e744c4336dbec2951e70682897d6b10cc922a80cc82a566dbd9 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD glimmer-3.02-r3.ebuild 1354 BLAKE2B 593b846736ca9232a924646b4955c59031f4a8c4c883164ab4b5769d4ad1007b38087f355228984339df5f4b4fca398b209754433d3a9eb57634debb105c9ab3 SHA512 c2930627e031436d36b87ac8ec80f672700faa91db3aba175e428e9190ae8129a66288c08f10e501e4c4de98fb6a9aebdb46c7300c0ad6b17768a6d1e53161ea +EBUILD glimmer-3.02b.ebuild 1700 BLAKE2B 4ad4f1678ec05064d3f80bc68a65cf6f6b642085c89f56dafee4f3f5c7bcfc69372b131648207ace2c2e836166b122c9d24fa63604fab905f43dff147f298218 SHA512 f66d205a926c198c92a8798cd7cdf20bc9620225fc67a20d097b70e08db995c05c2ebf9e7d760d123e5e9dee8c11b862070547ed1a751508d7b07d86ae983062 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/glimmerhmm/Manifest b/sci-biology/glimmerhmm/Manifest index a3814accc62d..fd3eedc5a00f 100644 --- a/sci-biology/glimmerhmm/Manifest +++ b/sci-biology/glimmerhmm/Manifest @@ -1,6 +1,4 @@ -AUX 3.0.1-gentoo.patch 4235 SHA256 04eef55bb0cdb4455d143bec7fd0113491caee72fa9a6c56237024b4f18abbf4 SHA512 e0350a4b604fe76462bbb7139264a9b2916c050c335589031bdca0cf0c6a653bbf84d9827f5c2096ff13f1007d4ef2e93698814758f787a98e4dd818be44bc3d WHIRLPOOL 890fd4dfdae05f846b9fe2fae239e68b90c80c7de8ae4f3449c340f99e25f93f9b0e3075756f61dc700c41b973e38b7147de518813d6012c5f640b7218487a59 +AUX 3.0.1-gentoo.patch 4235 BLAKE2B 8263516018df83c39da08e906bcdbfb8445ef26c064a82d8edf547fba5b569921905dd32476a99726f1864cc24ec5464fbc48db55e08cca0b9555647dddae120 SHA512 e0350a4b604fe76462bbb7139264a9b2916c050c335589031bdca0cf0c6a653bbf84d9827f5c2096ff13f1007d4ef2e93698814758f787a98e4dd818be44bc3d DIST GlimmerHMM-3.0.1.tar.gz 45475952 SHA256 c956838a398483003ff1af867c65aca082b82340d8b302b9ada77d1b246954e4 SHA512 15307d1982527bd83433882552cd3e12c76a65a2a119b6911a748dc801f80b1fc5732cb769a52e5c6281bdd48cf619a02edbd1b96ee40319fc620a3a7cdd82b7 WHIRLPOOL f2cc0f6cea083c223273dd59f9474a054c049b697fc122925d4f5820170ade67bfa76c6dd218ab10be5675fe0a2a2a9fa5172be540509770332cc5a1d6862ff7 -EBUILD glimmerhmm-3.0.1-r1.ebuild 1190 SHA256 8aa3d25d87b788b27f2c8b2cab541f007dd8506e90137eac8d22bc86017cc1b1 SHA512 9faea51c07ef865eb0dfd9028077ef7a3e42a633ca39dd1a66caf817a35a75236ecda3ed58f9941bd18c925f43a4319e65f1f03510032bfe92f0cae81076dd9d WHIRLPOOL ca23ebcac4ba310cb55e935af13381bf2a93ebfffc65f01912e9bb78d1cacd8705b1f10ed3d5e2c9e89d882ca4b1b7ac9a64dd13fac8f89367de05687b9c1b70 -MISC ChangeLog 2472 SHA256 09afa0cb342126d3541311772971705a0f6f43f43db8e48354fb42cc2203c230 SHA512 d6ab119f62efb6da6d04015fdf0a4d5d7ad8bf664ed22e5908bb50dbe4b73f0e5062100da3175c6715452da03e268f7afc7f8825c5daa7b5c0a2154c555e179e WHIRLPOOL 7187e5733d044e31f78467c17c64badaf8e2d28b870cb8f7632d6d6ddf1962e6abaf110c8692902539cdfb213cc201562167c6ac6d7517f2019c7c5a7abf41ed -MISC ChangeLog-2015 1438 SHA256 139eecbffefb14e67a5ce60286592f4cffc6c854c800c4734d3d6cf317cf711f SHA512 afab9849cf3851d8059bcbb9b451e342a24c5e6c2a780d880c90af3d5ad8dbad293e7a6ae47dba17c2d11166e52f5785336f07a477c72a4603df91c758dacf76 WHIRLPOOL 02a8691b718b35451af167db293045ba823721ef7641223caec20a2c654043a836d908f3233d8dfa3ee9efcdf7445deddd3f56472767701bc414fbce5897d2b0 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD glimmerhmm-3.0.1-r1.ebuild 1190 BLAKE2B ab0c495ffc681f595d466b236826df1eea014424c8797013e9627cffc9cb1e37411955ebccadcaf0f678c13d159b32187b0f6e6a3f3ffdc572208c0e61c0d681 SHA512 9faea51c07ef865eb0dfd9028077ef7a3e42a633ca39dd1a66caf817a35a75236ecda3ed58f9941bd18c925f43a4319e65f1f03510032bfe92f0cae81076dd9d +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/gmap/Manifest b/sci-biology/gmap/Manifest index acd1a5e6c6f4..135e4ca6c2a5 100644 --- a/sci-biology/gmap/Manifest +++ b/sci-biology/gmap/Manifest @@ -1,5 +1,3 @@ DIST gmap-gsnap-2015-12-31.v5.tar.gz 4169874 SHA256 2317ba63578ba87f534689c0bf6930a9b177df4aa8a75b2a82f2118760ff3037 SHA512 d42623c60c298d9d3009893432f3eef8cb764bf7cf26b42e6a95b27a468fffab20c8307597c4c8e1afdd61f35652246568c3162137ce59fc4850aaab1062bb48 WHIRLPOOL 2571b7d6a7bddf11b4cbaec22377af19a84633f7d8fe9de74b4c2fa12e0480a76df9a1f52b44199021aa05f6d846ef98d8fbb6f978e64f5b452bbaaafbdd6974 -EBUILD gmap-2015.12.31.5.ebuild 573 SHA256 6d094a2c799dc5474d713eee9bfd3a1e7460800e0cd87b26265a1dac82512599 SHA512 8a07e7de0c5d57a2fdc4b7e9da261f469722482be4acdaebcdd76b67d26440ad04cf93ce51a98e908a19ccb6d98bc2725103f9cac7cfcf254812d6499ce8aa70 WHIRLPOOL 50739475df2d3228bb2b2fabb8579fb4ba9b3f5319e549bffb01c4d012ec0130f5708424cc50d4efe22e7b7a0b520f0e9aaa684152c31a0d501e5000c6f7e91e -MISC ChangeLog 2994 SHA256 b6bbb78f332fbaaadc01d5f5f079dd06956a126e0117bf5f023a9ceb3ad624a2 SHA512 94fcc01f2175e0b87650c8337949504f8d0bc790eff5f23c28a133e8862d5f6359d948e94cf595fdba3c191fb03ee3739897372aced263cb80b2151c21d52053 WHIRLPOOL 8143f7c1384d7d1f08d117e3338214ddbf8b106c62c18845d19c14836eeef654a6100e7bc989d4c3f93972f52a7ace80bd80e6657a1923bda85f965c1626914c -MISC ChangeLog-2015 2010 SHA256 682aaaba8ef3561ac7b41b817a060e17ef62b6e8de70900fb73dd32e066c838b SHA512 29ee15e1d0ee818424db6ee66d9cfeca8ad18974c381a2e0d755864a6ccb9b497772a256c5a948f5d990bcb9ed6ed8819981627b221243e7f4f2d140787f482c WHIRLPOOL ccd9e4436d98b87ff6b1d2b7a56b0f9287f543b99951cf9db272e0daaaf096dc58596f1f250a91bd44b866b470c769bad57816699355dc34b4fb041e38980ccc -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD gmap-2015.12.31.5.ebuild 573 BLAKE2B 0f419e1978d475ea2cc509667d0bf5c389761a42439c8778309217a8b3bcb47215344531784b576d5dba5f0c972cf51a6cafc624f0a0ea3a899387b7a507200b SHA512 8a07e7de0c5d57a2fdc4b7e9da261f469722482be4acdaebcdd76b67d26440ad04cf93ce51a98e908a19ccb6d98bc2725103f9cac7cfcf254812d6499ce8aa70 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/goby-cpp/Manifest b/sci-biology/goby-cpp/Manifest index 25cf02ed1b62..a0cf57197f35 100644 --- a/sci-biology/goby-cpp/Manifest +++ b/sci-biology/goby-cpp/Manifest @@ -1,12 +1,10 @@ -AUX Alignments.proto 26192 SHA256 0f70eb8db279b0dae72a2a59113d68f3151199aed655354532e135bb9325c191 SHA512 c5b67577bfd8432e64489dfb08333adcece8712a398497facb284b52c5b773eff79d71c6dc5bcb72ab21b977423530e27cac3fa2a888c3a00cca1a09faf1b00f WHIRLPOOL 937bc8d18dba2dfb747db3ed38e1d3b5c09cc4e2eedd1ea3edfe5d9128b0a096166b71db217d9ba097c2041ec948e09056e97321e22a2d5b9d4b2d24b3cfc83b -AUX Reads.proto 3128 SHA256 ca2cd55eadf9ad9e64111ebd461a78456223c781fad99c2705c37cbbeeee215d SHA512 eed972f7f054096ba0e4b215e1551b8acdee6024cec6091abe2b92e268b09fb77d2e9c2a90520611da3bfe37e69a8341e406c4eccb57b0c88f3664f7f2818e27 WHIRLPOOL c6092a49b5932fdc0ef70642d71f43df6d0664ef1223486032012bcffe8c4054105beb5b4d9dfd21448b6c7220f3c29ee81a147fa056d3531a292a6e646d54ad -AUX goby-cpp-2.0.1-underlinking.patch 708 SHA256 3e6efd71da70481a078f31d751326635d52dc6414885590cf460ec0bd12b97c8 SHA512 511b91d704c981bf54d62b181c7244a1506b792897773ded7b836cbda32dfe3c4f9ab96260d6700fe665adbc7dd84a67dcbfbbb1f817c7f27aab46f8ac6bf8f0 WHIRLPOOL 9d02bb5089eb1a9e9053c31e6dd4befafd465a372a4e5f2a63c137d7967dc530225ae4cb8e33966c40bf62a28efda5ae71d1d60d4f5a75c5107b17bb1e08ae70 +AUX Alignments.proto 26192 BLAKE2B 412eb735feb2e1a9b85f4b9ee24620052648f292f041968a2d7bfae52c124697a40813467c038da44b18a89c2e9dc554bf93c414553bd1397829205af2f0f632 SHA512 c5b67577bfd8432e64489dfb08333adcece8712a398497facb284b52c5b773eff79d71c6dc5bcb72ab21b977423530e27cac3fa2a888c3a00cca1a09faf1b00f +AUX Reads.proto 3128 BLAKE2B 38af9aa9ac3e792791ee90a2506419dd2356618200c16924929796160c98b4cb5b2ca8ecb2b66085605b86227dc04f155f1c6610c07577ec0fbb3bde69da2384 SHA512 eed972f7f054096ba0e4b215e1551b8acdee6024cec6091abe2b92e268b09fb77d2e9c2a90520611da3bfe37e69a8341e406c4eccb57b0c88f3664f7f2818e27 +AUX goby-cpp-2.0.1-underlinking.patch 708 BLAKE2B c0b5e6607708dfb0329e0f81292197241c7b79a3521fbea1607225d1350e7cbdbcbecb5755fab545421801b73eba0e89eaa7a246a2e6d3b91d811f6bacfe456b SHA512 511b91d704c981bf54d62b181c7244a1506b792897773ded7b836cbda32dfe3c4f9ab96260d6700fe665adbc7dd84a67dcbfbbb1f817c7f27aab46f8ac6bf8f0 DIST goby_1.9.7.3-cpp.zip 127215 SHA256 8493daa7c850732c6c48d4512bd26b7eec411a729b39d9861a4a6aae08faa674 SHA512 56bf190224b6f22e0578cea4cc950e52e746655c75ffc13675276787b4d0ced682f891f6ecf7af3cf124b535ac3afc8711b0ecff44d6fd25fe521de7371c3486 WHIRLPOOL ae7ead1b0364383b46d4ef8b59453146c68384b379c26498fc9b24d014ba096a99723bad42cfeb84d44c20e4fc14882bbad303ab8c981889f90dff88a882c5c0 DIST goby_1.9.8.1-cpp.zip 134904 SHA256 2f1bd87f2870af178f34a8e7c11819aa9e42f35e20f1985d2ceb054f452e2a97 SHA512 d31cd7f0be19074bfe8da74d9f2510f0e0f15fe6c485bbed8520052468d2cd2f1bc5fcad8b0d6a1586f5acde73db326059f45994ecfbb5fb6c09692d8e155190 WHIRLPOOL 6ce51c46f8802d31068f510f6da13b2920086eafdae24506830b42d79e48eb6ed9cac48a96090a81964daebf4a0c8f21c490ca3b0af2f589ac57647bde1be79f DIST goby_2.0.1-cpp.zip 177718 SHA256 5ec57b833cb1a0f53e975112d1c360b14a9b17cfff3fb0ad77dd70672c1881db SHA512 992bd10d5538dec1478820f26151dd311f4de13e7947b49f0b06d6cbdd4b71deeb3aa8a4c6a598fb92fbcb9cbf4ff97bf81205c9389d4a0da4443317e48aea9f WHIRLPOOL ab94cf674703917b6f0cde812d0fbcd94e18fb6055b30d6a1eefa1e4cb5b76bbe18c67388c66e25e87e522df9a9946b0eae5a164428abe874a382f5bc39a13d0 -EBUILD goby-cpp-1.9.7.3.ebuild 555 SHA256 a93182c4ce170d48f01929c353fe6c14fddfe151914b7d505b563e05086b18e2 SHA512 9ec312647746b8b59841d9b4d976912d0ae25efe7ecc7cfc592dc2292a2884c663ee7b0d90377f0b0f1273563a5bc95aff10f7a5e40fef81dbae2f6ae4ebeeb4 WHIRLPOOL 5a1202588b0d25d19aeaca143c184bae37c1d979a36c29af6a83849bb402f5ec1c0cd34e2a12a7910cff47e29a0251e3eb542ca224fccc463f24d0917fc78a62 -EBUILD goby-cpp-1.9.8.1.ebuild 555 SHA256 219be61d199455ce88419f03d35e91f9e9135d248e47b0ee9134eba6140ce213 SHA512 1e1d69c51709724fec05cdcc29bdff3936f3366c811677c48a2f476cbf20476a9e9c7abbf19316f127bb252ed4dde6fc333ac0a28e7b78c29a576e58426d2e52 WHIRLPOOL 3ac4010c0e90a1997d41f0b98a8cbb18640d2cc262c6b67db59b6b353cf2ba83532b00d0a6e6de288edc3b3fea3370baaa109dfc99555d8ae92c8da56328e13e -EBUILD goby-cpp-2.0.1.ebuild 902 SHA256 067600b713fbe24d050bfd87b66f10b620baa899fb60770891d2fe5c98647395 SHA512 40f9ab4d29889468dd6f638db48914f21b900125f215aa224ad39123c1336c310d104af8fb5edc6d88d5b4da48f113616eff3dc598ab4d89e5f718fc75815994 WHIRLPOOL 22adee22f8d3a14951765e06b773f5e10355429edcee5fad69bb21926ed9a093924c0b931f6124cdba8e693dd5f9ba152bedd1a5b0d11bfd273c21f52806f67a -MISC ChangeLog 2640 SHA256 ad5c1ebe62c8fb4fbe0d07cce4774b2bfb6878f5a78a93cb9f2484cec64d91c7 SHA512 0075d83149239d2ee1f11be2d2d9d16aa06f2819f586bfbc0a15a6cb6146d683b52b35eaed8a67d4e927a953fdd5f1b47d3a34940ed6601f1513fed243621fdb WHIRLPOOL c21be89a847882fcb7420027f7bc3655b0ecf98e43ce9148b89c45aa6f87b2f98f4f880617f97ef47368d34d8dae24c22ba6b4ed543b68f5e31f96e2af62b8f0 -MISC ChangeLog-2015 974 SHA256 28d6be8ad909e9c94e2a3430daa60e4a6993173fcabcad0b8f8193cb31331ae6 SHA512 a86ba7b4ed3bbebd0a04e5740662d6fe4a46af09eaa331377e606a708cd48dd2155c849d7db5ec78f3e65ab4114c886be85f7188d3bea814007a898ae3058cab WHIRLPOOL 48c453c126c3f430727a05fcfb2c7606ab10031fb978d3b43a240cb18d0dda66344f882219d658fc288684e0328e80cb607e7503a5cfbf4e5aa6916b0606d05b -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD goby-cpp-1.9.7.3.ebuild 555 BLAKE2B 933477f32f153ac20745ec1e0ffd19940d107004c94cbec5bdcb891c848d528858f7c19295bb913b5660725af06eb8502ff7b2452d1ea4da805cd83799b7bbf7 SHA512 9ec312647746b8b59841d9b4d976912d0ae25efe7ecc7cfc592dc2292a2884c663ee7b0d90377f0b0f1273563a5bc95aff10f7a5e40fef81dbae2f6ae4ebeeb4 +EBUILD goby-cpp-1.9.8.1.ebuild 555 BLAKE2B aeee8edbcfba53fdf6c30c645ea811d8516a6f15262d88de6b0f085c6a3db291f2c92f7a219a64a747e0955ecf691a50f30f2499200bde5542b91c24821df870 SHA512 1e1d69c51709724fec05cdcc29bdff3936f3366c811677c48a2f476cbf20476a9e9c7abbf19316f127bb252ed4dde6fc333ac0a28e7b78c29a576e58426d2e52 +EBUILD goby-cpp-2.0.1.ebuild 902 BLAKE2B f4752a5d864e1887284af98fb8a6f84bbc181bfaf340fd0d40205611fdc600b8417e2ae4513866d61046adea7e60fa20217c7877a89b8ca5d93e53293c58f361 SHA512 40f9ab4d29889468dd6f638db48914f21b900125f215aa224ad39123c1336c310d104af8fb5edc6d88d5b4da48f113616eff3dc598ab4d89e5f718fc75815994 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/goby/Manifest b/sci-biology/goby/Manifest index 678f78558ab7..b9bbdc8ba052 100644 --- a/sci-biology/goby/Manifest +++ b/sci-biology/goby/Manifest @@ -2,8 +2,6 @@ DIST goby_1.9.7.3-deps.zip 19959489 SHA256 3932c61f001fc1d06ef298043d5206041e471 DIST goby_1.9.7.3-src.zip 15642000 SHA256 fe32a6720fcc0858811e40b744c9bcfffbb6cf277be50102446ff8798fd9ab24 SHA512 f213908e745e6c6d86895412f3ad14a8e0f2f3fbaba9205bffd7415982fc53181ca0b03b543063d0cbcd87f881d1b58eedb38a5090fa7ac20bdc513e54f83dd5 WHIRLPOOL c5f0d7d21624983f9e6f95c65eb477a21b3d5749cca53dab537060c8ce0facf6b4cc1f2705af025088fb6fd325539907a53691f42fbdaa9f3044fae75bcaa8ce DIST goby_1.9.8.1-deps.zip 20820943 SHA256 eb11916408a7978a1e90967783b8167b96c6d0dd60ae58cf1dab915a519d1bbb SHA512 16cf79e2dab8cfc62f9d012b88b0d81e712e67cf2f70582969624a019863f21ee20a4ce0517d5b74782d8d200318451e3f889fb967c6935e896d526d2a6fc02e WHIRLPOOL 00ec51b2999cb34b725a48ad0456d23c40a952272f58b558c8fb0cc3e086a89a11bd6440bddddb0ea7b9bbcadeb05078161b02617ee5c55baf388aa73802b187 DIST goby_1.9.8.1-src.zip 15748880 SHA256 e2489a815a38bd10b1ec59b4e262a023f97994d9953f97bcc6571cadd05919c3 SHA512 68e772f1a60d1c78d2b08ee203f462e6ac19a46124d25ac1bd7c69065d8122ce6dbfbd3cc6aa287b13b11d5442e9b41609463a8391ffe037249655a212284ff0 WHIRLPOOL 05277c80d0b9235ea3835fef0d34afca3aacbf1ff84624997d19ab749b8fd4b12c0bda2bf519f2ed031575edf2dac5f312835c67d7ded33a44b2767675c4f4cc -EBUILD goby-1.9.7.3-r1.ebuild 1531 SHA256 02a64cdc71e17f81811ed3a38fb15b6615029e69514d97ff9cc487782235a6ba SHA512 b8a99a082b6453db69ce740912d823e2f5b0009ded8082fa66955882e1b88fc86c92b374a17d0d8d9870624119ba2509f8cefb3e5165b87a22cd540e9c40c768 WHIRLPOOL 70d9c9a5410eb6b8342ff626d3302d9d6207e97da01a42a732be513229c0a388a62fcf3a987959a57229bb5808e5a126e5fdc71de795e4e84558b41b457c3ca9 -EBUILD goby-1.9.8.1-r1.ebuild 1531 SHA256 02a64cdc71e17f81811ed3a38fb15b6615029e69514d97ff9cc487782235a6ba SHA512 b8a99a082b6453db69ce740912d823e2f5b0009ded8082fa66955882e1b88fc86c92b374a17d0d8d9870624119ba2509f8cefb3e5165b87a22cd540e9c40c768 WHIRLPOOL 70d9c9a5410eb6b8342ff626d3302d9d6207e97da01a42a732be513229c0a388a62fcf3a987959a57229bb5808e5a126e5fdc71de795e4e84558b41b457c3ca9 -MISC ChangeLog 2835 SHA256 f4476a07537c9d74f7c8fb826ed97e3ac4b97508f5503beb4a57d8fec25e6f1e SHA512 aa7b596952270647cf86c2dc8e52afc5945d34faeca3747e3684977322a19441a24f788a406eb2854f907fea115062ad64fbc806e244ab510f755bab4babdd22 WHIRLPOOL b2aa112d59fb739ff85ad6f1244872207fce4328092b82cdf59138cf9112b7abed3c70fe156ef52c873b239079e853b3d789d5829e0760bec3d0e59f18da8800 -MISC ChangeLog-2015 615 SHA256 f8f65e9e4b465958c847c3f2147e833db9726130ee5a8fedec8f3909f36f6a79 SHA512 315255594170894eb8d4b8806bdca67e16696f314ee861324dcc64ebfa09745ddbe7294eb149e2f75390d72af2d3bf3b92a0f512a86c4cf556b42e8f96ba9651 WHIRLPOOL 42b4423e82917c6a0131250c33ea837e4afb4e6d547bb2dd0d3d84686d7e332fc45d8376732aad8b10cd8fb37fb8950aa1516ef02b74d56cc6ba33256a0ea340 -MISC metadata.xml 330 SHA256 b95d24f3bf9019f4b6b7fd35a160e4cd8d0fe3002b7c71828683538666978d30 SHA512 7d7909e5632e5d2c18241237d5e06501e50d2d1fe07a618e8a028fbdd17bc2a420e23bead1529c6cfe76a82fdb04fd636b911230b57722ad9bd16e796baeb87e WHIRLPOOL bbb96e4a38e1fef9c9f1acc80f6b895134f533ef9d6623584f247637e657c520a8937d002978fd8f7b652feda2321b7c1d194a3b27d8bdc28fabde57bedbf033 +EBUILD goby-1.9.7.3-r1.ebuild 1531 BLAKE2B b76fd81aee6c1f67b6f749c8e153f52c985e564f1e81bd68c27a2d90c6e39617a1b8f91ac1ab66fcdfb523ccf13653ba68db09da90f872d077b958977f9aab4e SHA512 b8a99a082b6453db69ce740912d823e2f5b0009ded8082fa66955882e1b88fc86c92b374a17d0d8d9870624119ba2509f8cefb3e5165b87a22cd540e9c40c768 +EBUILD goby-1.9.8.1-r1.ebuild 1531 BLAKE2B b76fd81aee6c1f67b6f749c8e153f52c985e564f1e81bd68c27a2d90c6e39617a1b8f91ac1ab66fcdfb523ccf13653ba68db09da90f872d077b958977f9aab4e SHA512 b8a99a082b6453db69ce740912d823e2f5b0009ded8082fa66955882e1b88fc86c92b374a17d0d8d9870624119ba2509f8cefb3e5165b87a22cd540e9c40c768 +MISC metadata.xml 330 BLAKE2B ddd0725ad965e39412cd06f12b75923da7cb52da5d584d6b10751ed17d5148e7555668e8c112bdab833e4d467ab41e936128a09ee1c832f06fe0b5ddd4ffb679 SHA512 7d7909e5632e5d2c18241237d5e06501e50d2d1fe07a618e8a028fbdd17bc2a420e23bead1529c6cfe76a82fdb04fd636b911230b57722ad9bd16e796baeb87e diff --git a/sci-biology/hmmer/Manifest b/sci-biology/hmmer/Manifest index 0483bcfe2070..526eeb690afb 100644 --- a/sci-biology/hmmer/Manifest +++ b/sci-biology/hmmer/Manifest @@ -1,11 +1,9 @@ -AUX hmmer-2.3.2-fix-build-system-destdir.patch 825 SHA256 d1d2dd37606e512016a2e36cb1869433162b937e2a01d7d32ec755b913f3fc27 SHA512 f7eb3de5cbb1bf58b4ae4514e020ea059ad6a267e6f425494d8b444ac1bab056bc4709fed7f2793e68720b057ca1ac8c6dbca907125712d18dc05b77e37b1c3f WHIRLPOOL bfd161f040aed24b327f1ce9a5f90a02bc79baf0c114819964c6f687a2602df98b8eab5e0471c75af8d58084da58b705b2398fc7ef8023b8b3002758dcfa0c69 -AUX hmmer-2.3.2-fix-perl-shebangs.patch 2457 SHA256 9c3b581704d410a2ac25b31816c179388092c04f034afcf4dbd59216951bdc00 SHA512 9597d77b3101c091bb1d005f36229cb6bedaf496a15da472495bb688fdb2750c94a38adc1236f3d90b0085caa78f61bddb350d51e0d3cc8dfa96edcdd5e2e5b9 WHIRLPOOL 68f3ad01d6f91a1d26ffaaf0e6af299cb35181f7576eb9431a7b6aa7b5e9558c482d2cca47177fa21bef59b00ed7f06b5085109f57552bd844097d42bfbd0d82 -AUX hmmer-3.1_beta2-fix-header-install-path.patch 3202 SHA256 4d27d42010878a6cd21ea04921c85ea4ee08c1a21da68dc0b7a1fafbfaf3c6c5 SHA512 ccaaff25a50a60526d0a16196b2b1d8cd57a7e9d016ce2b6b36ba1c0123966113b10965303dceb494810cd17a802514bba3a49d010ee6bbdc039715b84524d9a WHIRLPOOL 8d909ebd0445d6f2fb75c7b71df942fdb5631b75602ac44840c632e5ccd9c7b4cc47172f4b3c8223fa9ee44e995233b93b8c0e1b55f5770cc268b29091e8ab45 -AUX hmmer-3.1_beta2-fix-perl-shebangs.patch 8605 SHA256 a0cc39baaf73280585ecf98b950fc96a432a0fbf956cbcbe60557c23b9d97d61 SHA512 ce2c91c2d34d49dd5082a97ca0543bf3a176c792b4efd0cb37561114fc572b41d6cd546e16267283d33138ad54e2bb0c9c912c8fa1142e558a5452e9e72da2ff WHIRLPOOL df90c8d77165ccf529917003236c831826757927ae23b730411f29d5e7e1e48b9af6c94b56007c836be9f7cb744a6ef0f2fcb2d3141a4673155983f1469040b5 +AUX hmmer-2.3.2-fix-build-system-destdir.patch 825 BLAKE2B 46264f43ed43a567c1f650710e1485942eb48a0b7ed3860424f00ca06cf04f9e923318c5df3d56eb312ed773bf2d42e22880b4ac6c2f81ac6c65bf2cebf44008 SHA512 f7eb3de5cbb1bf58b4ae4514e020ea059ad6a267e6f425494d8b444ac1bab056bc4709fed7f2793e68720b057ca1ac8c6dbca907125712d18dc05b77e37b1c3f +AUX hmmer-2.3.2-fix-perl-shebangs.patch 2457 BLAKE2B 1afca014901d79416dac2c1d41e20371ef970aa3691a6b414e9a96adf8331c619753df7a42e1d9af63aab12a3fc8b8c7d2251129dd581bfb33a0d7c3e50970b2 SHA512 9597d77b3101c091bb1d005f36229cb6bedaf496a15da472495bb688fdb2750c94a38adc1236f3d90b0085caa78f61bddb350d51e0d3cc8dfa96edcdd5e2e5b9 +AUX hmmer-3.1_beta2-fix-header-install-path.patch 3202 BLAKE2B e6f8050c2edd11c890dc53bd6ba4cfaf6b537ab11ba45b88f497c0b62200029839df5f2adfa54612805ea87a5e252c9c198a52c1ba793a1c612ca99c3f8edb0b SHA512 ccaaff25a50a60526d0a16196b2b1d8cd57a7e9d016ce2b6b36ba1c0123966113b10965303dceb494810cd17a802514bba3a49d010ee6bbdc039715b84524d9a +AUX hmmer-3.1_beta2-fix-perl-shebangs.patch 8605 BLAKE2B c0c78fed780b43df960dc24914e5dabe161243cec015deaf058d7eebf79c5e1633ded4f1305bb37b9766d74588009142fd58886e67810940e9601ef138647c21 SHA512 ce2c91c2d34d49dd5082a97ca0543bf3a176c792b4efd0cb37561114fc572b41d6cd546e16267283d33138ad54e2bb0c9c912c8fa1142e558a5452e9e72da2ff DIST hmmer-2.3.2.tar.gz 1024933 SHA256 d20e1779fcdff34ab4e986ea74a6c4ac5c5f01da2993b14e92c94d2f076828b4 SHA512 5abf9c304de38b183a5beab7a5cfc75c3774ff6e161b7b8e55a0eae9fd156dbb7ed95d216c16d3c585c494bb69e3a9fdfabfb5dc729b7050a4d1be95c74df7d7 WHIRLPOOL 604cc3f532d6eae3fbca893d991d0714a5a897fbac3059d63fdbebc6221e9321c2b444db2700e7068a11c043c0a7f9f3935617a3aa1878ca06ba18c558d55d40 DIST hmmer-3.1b2.tar.gz 5965253 SHA256 dd16edf4385c1df072c9e2f58c16ee1872d855a018a2ee6894205277017b5536 SHA512 64c8a840cb62160a1c13a20e64f42d297edb7969425d5047eefd8ee9f992d66612d62843523e8f33a2c38568ce1b0a9df23dd1d3ecf6773007f6db12d4cc4771 WHIRLPOOL 0b6d17b5f5efe31873cde93ff33cc5b01c53de8e1daf1ed473ef92d6585f34abcbb31e35e4d02537fbbc2c808131b70a0f51a3832ee332e23246cbc75edc354a -EBUILD hmmer-2.3.2-r4.ebuild 1631 SHA256 5f9c148bb77a39f57f530f7d8ee6e968e23d657d0d3a7814e8157b5ae976866e SHA512 c237c12b1c8f0d3059055f361bd0d74aaf4997506e7ffce4ea52ba4f4ddaf96863df306f54192f42c209ca74c32d66c82ee0408c5cf44d15b774c83d2a38c188 WHIRLPOOL be4eb0afbdb674b6f5f9c5c8a2dd1cd6ab9bbba3d9d6d4f80282c0985607f6a55a0a5b2417e4a07939d20fb1a1e2a0b85751e592509abc7fa031d777d1cf650c -EBUILD hmmer-3.1_beta2.ebuild 1039 SHA256 91fbea8012ac6a8e5ae5d756b96f5c6c6700e1ff00ccddb4e7e916e3a8b57aa8 SHA512 fdc4c77b49d32f5d767a351d09faca6c9229d0a58060514fcf9a455a50d6649b016d71269874e9de4ecd7a121a1bfa9c84f493641beb39f0da43d87155f15c6a WHIRLPOOL 91f2a297e642b06460ce950486bba9e20b06061d538d143a94465b794ea6b5c41cbc2655d7f4aa1f477ab39d24153bf02afddc3878f3089e27ee4effa6f9ea43 -MISC ChangeLog 3721 SHA256 00cdef946de218c91cb088cfc76f2b00a75b5c00e348cce7b6ad6a57c2bc7586 SHA512 b63a10d874eca6459e2f02e4b725fc0663fe8f900ce95ff46e53eb4fbd9a043c569529972497a8d374e5f9929997026d04c40046ecb1ccda8c8c5aa8811717db WHIRLPOOL 94b722a856e6edaf1ba85722a8cdcc65ae047ae2cae0f530dc7d18a806d94accbcbf1e0e65d195608c5d7201f93a1e544287a5e202d1989616f5f9d2d2c8fee5 -MISC ChangeLog-2015 5411 SHA256 6c0efb04e2ef19c016477e9f09f43844dbfa6561d0a30017788970911add7c8d SHA512 119f27f43cb815065b027d436f8e8ef81633cfb918327ff989f60728442f116ce00609e2cb8d4842b1430dd7dbea04927edb1c736217a4c59470a09a65a5c07e WHIRLPOOL c4503f79cfeef60de665e55f3138c1e261073e5751842a4fc51b0a3c70f1d9302bfd51bc97a762a6723777f1737879caddef85f582a314310932cfdf447961b7 -MISC metadata.xml 261 SHA256 15c95fe0beb2b86b616b7ac1be6f1118bd598d907b441a94d87721c0d6f36855 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a WHIRLPOOL c00a986f98ceb4fa20ffdb0c411de9841218f8af6f7499a20a34258db4cd74cead97ef2ee18ac8cac7eae7db3c95084cbf8aa3a36f95a1ed7efbb0e088eb50c8 +EBUILD hmmer-2.3.2-r4.ebuild 1631 BLAKE2B 2d27ff5c3d172444c84aac4cae95b990f311ac28b9733fc30ed629c5b6cd03893bc07bea2b5ab4d722a1e6fe23f3d3ac5cb9b007c1fbacff63b40b0d33833664 SHA512 c237c12b1c8f0d3059055f361bd0d74aaf4997506e7ffce4ea52ba4f4ddaf96863df306f54192f42c209ca74c32d66c82ee0408c5cf44d15b774c83d2a38c188 +EBUILD hmmer-3.1_beta2.ebuild 1039 BLAKE2B 2533b7c77b156222a2c0171330addee16dd7ebb21bb9951aaeb8fa638631275737d3e9373e1225b16bb2e97023d5493690cad85abbc1d2dccce1f0e83753c976 SHA512 fdc4c77b49d32f5d767a351d09faca6c9229d0a58060514fcf9a455a50d6649b016d71269874e9de4ecd7a121a1bfa9c84f493641beb39f0da43d87155f15c6a +MISC metadata.xml 261 BLAKE2B 3768c926bca545090342a947ba83e706a8954c51b99a5e7b3476ba5198cd326fe1c3b8efb51dfd6be1800682556b8ceea065e388981463ab32f3d687951872f3 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a diff --git a/sci-biology/iedera/Manifest b/sci-biology/iedera/Manifest index 56570db211dc..45ff5f064dcb 100644 --- a/sci-biology/iedera/Manifest +++ b/sci-biology/iedera/Manifest @@ -1,8 +1,6 @@ -AUX iedera-1.05-fix-buildsystem.patch 385 SHA256 82fb560b09df498b8484bdda7324a03b5f79745f778d7c2a7d5fb3d2992b0489 SHA512 7f20d78fce1ab3a9d30290675a6893a73e2935a8842e8ac8a3d4268a0ccd2a3f165ac0201b6bb13978621230f0042460e704f706d6b3e3ee9457d6a4b6417741 WHIRLPOOL 443e91d68c294ca0e457635b5a1ee1238f5424cbd1992cbb05e0313919f7ff8f89f87d25569f49d8238077b6139a3f2e24b069d001a52d780e1bfab4b415cddc +AUX iedera-1.05-fix-buildsystem.patch 385 BLAKE2B ee7ccb9bd08a8be617e0165a4ee6c6f899ef03e297a9839bfa1982960f0e2f132fb8a444d1bdb74c12b55a66068577dd7be127311b71d21b599a4cabe0b3c79e SHA512 7f20d78fce1ab3a9d30290675a6893a73e2935a8842e8ac8a3d4268a0ccd2a3f165ac0201b6bb13978621230f0042460e704f706d6b3e3ee9457d6a4b6417741 DIST iedera-1.04.tar.gz 123847 SHA256 39d60b052f40476aebead981020f53e6b801293c3f13c4aea3f65a230027f39b SHA512 7dcbc078d7c7f84c12736573bf5708ef1aaeefcd52af24ed379535069cfb498c17dd166dc84504db7edc19ab628f0af43d0f2744e37b5565234820631784e126 WHIRLPOOL 2011116719764140c7a59fcda244154f014d03bcdd11cad3ea968c866959cf6551b388ea458ede20f4de0b0ab7b2bdaf021b94d8fc219e3c324a8022aed7a8e1 DIST iedera-1.05.tar.gz 129163 SHA256 35df4aad16cfda4a029f6bdbd4ec2777020d4eb6b44a2d3ac0077fae79f5e3ff SHA512 60d35227d5479fea693e8a3c0e629aae9e21f3c7e2be7b2f10aaddcade70cc6525fa18dea1851f73d6c1aadbb5e8776dd4a146b1a81ecfe8c910729a2300066f WHIRLPOOL 39b248a4f5fd6fce0ef52a4427f081cb5f276176be9cad9243b4b1a4f942d5539b0dd7198e96c8b69245c628ca3b4132ad5013a196632eaf20b66b0513af0738 -EBUILD iedera-1.04.ebuild 433 SHA256 33936e50cf24a63d2af556db804cfed19a7b2e3cfe08874e08349da8aa1ff216 SHA512 c21467718e39ab4599dbe3ee12aa14f3a4ad012084292d0dca191083ce4de26d1e4f61a3902d71377cd76de170a1302a38d54c5354417fb3d78d9afa63163c70 WHIRLPOOL 08ccfc4e1f119d4598e05f1a9041d8ef38f21e0819f4325711507363ea1b8f19418bbaf2f440f9271f86b2fa38d5a197ad1f53ecbda0cc873521957df394b741 -EBUILD iedera-1.05-r1.ebuild 490 SHA256 92a512dbe09869046e390526532f7b606e9a75053d163203b07396492db3ff75 SHA512 2d30e9a6a88e085fc1acad0d5b56eb3bf590f26208b56dc195dec84bf7c946cc5d9ae0d36c147b43b812f16c71ddccdb11db28e2c1263ee46be6dd5659ef8754 WHIRLPOOL 44d3914ddd850195b8831378bbdf7683e3c9a5ca0c1e2ff31eb1a76e521b1eaa683e1204db88a29479ac1aa2b55438ed93c533f5afe46f541bc21c1e8b03030d -MISC ChangeLog 2900 SHA256 850c409dfe865ab8c2a568e974b9f7546c7a853b3f37151f2ffa19028853f777 SHA512 7f4768d4b4a7375f0b2dfc5ac760346a9c0c77ee12c7d0a1be4e6983ecd3a2a5cbdc96054fd689c4ba6c2068aacae99d2815842faf89f7303384f4ec3f408815 WHIRLPOOL 3e52270007bd954185f345e6493abadee3b3f1a263482c386ea8a12c0872d58f50dd656d42fa56c241a5ef46ae329eb77125829c2bfe289f15a35996386ed128 -MISC ChangeLog-2015 500 SHA256 007f5acb86071e6c89a78219a805f31e9ca87c833158e7ca58fe681ce15ee21a SHA512 2cf1330e0cc7e53acb2755cec56130d1386138aff00ecd68a8d11d5d0c484273ea8916fb7202ecf993b93ce7479888ced5a4800741119885e3c2c522e66faad8 WHIRLPOOL fda49a802218ea518f5ae8d22e3e26018b92d15a437521d096199986957c7ebc4e5cb765a54c91ed9839965e115d1ef8dc871a891269e992acefe37cd8a513a2 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD iedera-1.04.ebuild 433 BLAKE2B e19da37eb4e19e02c1381023c7da16c2e5bbd140bfbcabc214825e0eaddd48dd8a4d6959ec0f9d3ccb6b1f8dd3cc6d73fcb64725a40c2a010407d1454286ad14 SHA512 c21467718e39ab4599dbe3ee12aa14f3a4ad012084292d0dca191083ce4de26d1e4f61a3902d71377cd76de170a1302a38d54c5354417fb3d78d9afa63163c70 +EBUILD iedera-1.05-r1.ebuild 490 BLAKE2B a343877f79ccc0678765b4548add19e02aa13aa8d434933e7f0218896e838c25ca668d47ab5d9fe3966eaf995f05857b8ab7b4a28bdf568fda0cef917bfd6aa1 SHA512 2d30e9a6a88e085fc1acad0d5b56eb3bf590f26208b56dc195dec84bf7c946cc5d9ae0d36c147b43b812f16c71ddccdb11db28e2c1263ee46be6dd5659ef8754 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/infernal/Manifest b/sci-biology/infernal/Manifest index d97cb531ca8b..d57ec99695fa 100644 --- a/sci-biology/infernal/Manifest +++ b/sci-biology/infernal/Manifest @@ -1,10 +1,8 @@ -AUX infernal-1.0.2-ldflags.patch 444 SHA256 db5d7d514d949dbe6f9e47961cc3e3e57898d6292fc6eb3675d69705737cecad SHA512 95f953bbf57a78f40df51bbfdab62e715905aa2bc57d4ca75e380c81d34c88d0177e6fe51933c908bf6e6f513b8c38ffeeb7c8f1802773c7c9773a36388b81d0 WHIRLPOOL 6c78e220702819ffe4ea25210a9b57052a37a24bed626cbc9970108358e76c0a5e3430ae44fcc92df78e3d8483f015e018f17928c999a359e3b4f8122596e5b0 -AUX infernal-1.0.2-overflows.patch 540 SHA256 692f1fecbb8e210e8b958d3a50584b4073ec129b6647da83f282e06949cb66ab SHA512 c8bafb2c10d09cae24f882d5238b6ae974669d59e0ee583bcedb13e81c88ea9859c1f78343d5be91a5cca05a3dc07ffe6436b33e201a46baf349795da5eec906 WHIRLPOOL ab0dd02643040650a40b717ec9f597c664bff9735e5ddc51a567dc9f4fc26a192f09212ee9ac0e10ade1061391517017416dde59dc4ccfef7d5876803dd6e739 -AUX infernal-1.0.2-parallel-build.patch 659 SHA256 79e8142c0970c7de12ebf2264b9ae1973dc9d1e76d672d0ffc2790a5aa95096b SHA512 d67271d858f60a5378d61892cd5c354ac95234620437621f3bf770e8829fa866a451ee031f530f502385044d7622f0fe88827614e95ab35ac6cbf8384d21e9c5 WHIRLPOOL 1513e00ecb5884ea3f1729f60862b3c3ee88b7686f331b8c2b00f078eb8ab5e2592510c7eee344516a559fcdaa8dd88ced11a212a15dee5806bb0361b1539722 -AUX infernal-1.0.2-perl-5.16-2.patch 4206 SHA256 db663878a8d139f1832ddbec54131c518cdbac1fa8d298e80cee529fb3eddd0f SHA512 9784f31c18f6c53b15c0454d3a41db27c3f433ac3d3030bc113e9f9e8194fb51109de5055d038a3c639b1c4142d6fd0010825df484a857c9f072f43d8cadcb44 WHIRLPOOL d8ce80893fe2abeb537daa0a759a432649f677d9cc9f77ff597b4a1bfb8d90b45ca4bae0043cd0fb889f6a14b0caa90d3d7cec9516f53d24e6b441fbfeb4dfe3 -AUX infernal-1.0.2-respect-DESTDIR.patch 396 SHA256 179a5e9fdb5f298cbab69f9dcbf3b97df7242702268e433e7bfeadcdee16379e SHA512 6847c87e45a34a68d179fbf8c9965af502cc9e52aa1f5ed800332dfb52e97ca3f2cb87a7dc4c3adb2d85f63567f15b084a50c7139f5ab03b0cf2b0711d023ec4 WHIRLPOOL 36981fcb327727c24364bc73ad3f80dc03628996c6c115677f676e02b1704d970329c3f87b812300d1897975373996ef54c3c4da343c2884fa29bdd8e880196f +AUX infernal-1.0.2-ldflags.patch 444 BLAKE2B 287cac3afc2898d51e5dbf82b64e793dc5decfa134365e91f1ea599df63ca736ec979063a64f2ff3a52bd5213a836a0f2b9875b5142c4a8245403261d5b382b1 SHA512 95f953bbf57a78f40df51bbfdab62e715905aa2bc57d4ca75e380c81d34c88d0177e6fe51933c908bf6e6f513b8c38ffeeb7c8f1802773c7c9773a36388b81d0 +AUX infernal-1.0.2-overflows.patch 540 BLAKE2B 1336442c3d1ef8a78d5d7a345bbbc3abf918d6edb0cef8fddcac32b9ece9f990464b3815592f564a05494a8b7c5c75e438349c384c29caa73c467e40f737db45 SHA512 c8bafb2c10d09cae24f882d5238b6ae974669d59e0ee583bcedb13e81c88ea9859c1f78343d5be91a5cca05a3dc07ffe6436b33e201a46baf349795da5eec906 +AUX infernal-1.0.2-parallel-build.patch 659 BLAKE2B ab11ef5e62268818d9cf4a871c82931ac85c564c3990fc06a4f74d8f826f4bda16150bde790681ac416ba40e0fc2cef9331942d30b25249a11a58434d56935e6 SHA512 d67271d858f60a5378d61892cd5c354ac95234620437621f3bf770e8829fa866a451ee031f530f502385044d7622f0fe88827614e95ab35ac6cbf8384d21e9c5 +AUX infernal-1.0.2-perl-5.16-2.patch 4206 BLAKE2B eb4309d31e874f395d20bded4c132fb8b811fe17b4af5c95bd56ade05e22e7bf45c08e67884ca339aa7a2e13b2ddc9bb9527cbddef9458ce8fe05b7bd4707e49 SHA512 9784f31c18f6c53b15c0454d3a41db27c3f433ac3d3030bc113e9f9e8194fb51109de5055d038a3c639b1c4142d6fd0010825df484a857c9f072f43d8cadcb44 +AUX infernal-1.0.2-respect-DESTDIR.patch 396 BLAKE2B 822a6c543c0ad0a0ff75cc3fd50c4bbb84791cadcd4a93ad1a498b7464562dd00eea7424324f1bf715802c0dc9824dced0d16bd76d65ba9b7886b536b32fb988 SHA512 6847c87e45a34a68d179fbf8c9965af502cc9e52aa1f5ed800332dfb52e97ca3f2cb87a7dc4c3adb2d85f63567f15b084a50c7139f5ab03b0cf2b0711d023ec4 DIST infernal-1.0.2.tar.gz 15205421 SHA256 c4f89ac2e865c8b04a53a647703d88f96c31bb1d47d3e06f4b6090d7d15643ad SHA512 0399be14c17f053574e95d8c5b9eaf990545795a9268e20f0940e11a8e78fc49beb4b23994e9ea427764fbb29e9b39f6da9cb1d85eb4b56d354057b48515c4af WHIRLPOOL c4fa3326eb1b36252ce41ca1aeca68bed4373061ca6bc2bfc0af62c0805bfa1747272fbf223b8d47194853ae5cbe7af11d47493c258264503ea6aa7b142a6b60 -EBUILD infernal-1.0.2-r1.ebuild 924 SHA256 db7e48034d9bca2ca4f0a385eb4451ed06d15029c45c9c76b4774f3b38869f3e SHA512 816308be6a7e57e30f7c22e0c37662cde9b234501e324889e7e21e4d0e779cc6bb113490f10ce1aba3aeff46bdf9668442878e3cea4d5ad171beeb0e9fe6832c WHIRLPOOL 51a7a1e7d6f615f2fd283ef8471181791b342b7dc7ef62d2093ec87ed06ae41f7f79a6b87a2dc47a416a02a8039a4d744d405205e2fe8b05fa7c1116969b8409 -MISC ChangeLog 2606 SHA256 479570cc326272ca6f0a2d16121de71e902d5e838def774c132b6dd6216ffe69 SHA512 c20696de2b14dc6720ccf55229941b69dc295c848b9236d902694e43425aed06389a90f3ce82e0bda9868028b49bf39cf847fe35089cb9d043e04340ce86cdde WHIRLPOOL 0340e76d90c707d2cc187e263cb6d5dde99d0724566a48c4188ad96b10d940858ef8a69d0d88a0884e55fc68f7ca126054a29c1bffd7c4620e469973b54e7e9d -MISC ChangeLog-2015 2575 SHA256 98f684e2671e5dcef3a9572874849d0bf01b8794e7ada1611c491816d8b8ef40 SHA512 371c177a61a11365b50244977c04f1d19cd3ae77425b11f29e39cb9e6ecc5a389cd4fcd0e24bf7fc9086874a03b64208ddac40c2d4ecb893296218a490ecc0ae WHIRLPOOL 3e6552a94f52d170421f1bce77fca59259cca376c1043f10e47c3274ba16089fbff2261817b88773d284b0ca0cd2d51e5078a7b43e973e6712197ab546c93a27 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD infernal-1.0.2-r1.ebuild 924 BLAKE2B 8a1af66f6ea82e8232d052d5361384a1082569344bf642b3e29b6f2d46dd1889c5780f3617e4d514857da013ec117e55cefa135aeb58587217746902da81b139 SHA512 816308be6a7e57e30f7c22e0c37662cde9b234501e324889e7e21e4d0e779cc6bb113490f10ce1aba3aeff46bdf9668442878e3cea4d5ad171beeb0e9fe6832c +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/iqpnni/Manifest b/sci-biology/iqpnni/Manifest index 871d1f2968bb..1afee53b71f1 100644 --- a/sci-biology/iqpnni/Manifest +++ b/sci-biology/iqpnni/Manifest @@ -1,6 +1,4 @@ -AUX iqpnni-3.3.2-cpp14.patch 1240 SHA256 47e6b0c1a1894685af11b29d864113cdeaf5e1a59f0c95d4daa005a1fce52a0f SHA512 64cba6133a64fdceff3c7c5ae7f2108e7115718609122fa4b647a6b48cd966774c20e2d9cbb4e8c4c1377de94bd57e07ef40b25692c4ee6d2282f8d4e04ddb78 WHIRLPOOL 56d1638476d2978bdeccfc411d408849c4b37c52611cfe24cbffa932e069fe51ddd558c12310738533567dc121a66ec1d1c8c6478e9b41770cfb2ba44b6dd148 +AUX iqpnni-3.3.2-cpp14.patch 1240 BLAKE2B e45efc553f7b0779c5b63639363f2040883f9568cc4bb36fcea8945d8d9855fb57801d8244185f9109781187ee2ea3edf111d2e16240c8f1834042e37ba6b150 SHA512 64cba6133a64fdceff3c7c5ae7f2108e7115718609122fa4b647a6b48cd966774c20e2d9cbb4e8c4c1377de94bd57e07ef40b25692c4ee6d2282f8d4e04ddb78 DIST iqpnni-3.3.2.tar.gz 646603 SHA256 e4ffc783c7444bfadd40c9d55e9fb0275fcf7dca80aa3217768c9bf63c28567f SHA512 6e603117b746956ad0c3b140968abf2b3b3065a18dc78cee4975f1d2e7971334fdde15e2e8d2fd7435b9490aaaffaf17a38f72a3897c951f493d866e21d94156 WHIRLPOOL f4319e93dd7c1e6700fed54f402aea50bceaf23eb352011105e2f9ea9f225772981b880acbb14a388eb1f9a415a8e0751374769131f634459daa415928ff08f1 -EBUILD iqpnni-3.3.2-r1.ebuild 582 SHA256 42ae0a9f82645a98ec76fdbc12bc3f2cb73ebe946a95dca9a6b86032bd7b4983 SHA512 ffaf3eb0c9384c52859bb598247850fa6b38dff9a1b75220b9596a10c5af1dd506edd66af0051cf7799003569665c7ec7c6dda02554e0757c57961988bf4afc2 WHIRLPOOL aba56c5dece718ee01f2efc325788adc6680b426ff614c9b627d9c5c13984975e7a855e14a7b8e51dd25ffd8a9c9884e7bf0f2d77bad8320bf3d061193f2764e -MISC ChangeLog 3276 SHA256 6def8052b068a89aa49f0cf1a7fd43e624554365fbf60f82bb0fada678710df8 SHA512 9aae3baa24a0f800f8f5260ea51348954ec1c828e780e9c0bcb8fe5b62238713b43255fbf0d5ce1a79cb61a0ccaee8824d8ff7c29694dfee598a5cef8c9f90c6 WHIRLPOOL c903401bdac610b2b15dd5054d07f6cc99e0139ecbe15d8d299bfce981edc0ae6b6040d700244c771d17d3a3796ec59582557d58dc41b1005547932d45c9d7f0 -MISC ChangeLog-2015 995 SHA256 b8d235bd4a74f81f84eff9fca80463a86132736a21d826a50e4e32e28b086918 SHA512 b73fc84b8ef72409cf961ec1a2cf905b59865c3882ee5d827e043412b3138cf3cb63d5558d0d355e286b139e80a6551ceac2d1d4c0fb10b6d268529526211f4f WHIRLPOOL 4bd0d5d67ef475f54ab50baf3d41857c6227bbb420f2a1816eab8a6eb6564e2462b606289724aa4b37ea6f68fb2cbb9552e99cc01402f0168f1b1685647d2b5b -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD iqpnni-3.3.2-r1.ebuild 582 BLAKE2B e25b9846e1402d50670d6d0874dc7fcf38d61a63340924fc0709f1e973dece08908f6de1a5c79e8ade5d9655e397e41bfa2311d5805040eaf89e72aed3bb01e6 SHA512 ffaf3eb0c9384c52859bb598247850fa6b38dff9a1b75220b9596a10c5af1dd506edd66af0051cf7799003569665c7ec7c6dda02554e0757c57961988bf4afc2 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/kalign/Manifest b/sci-biology/kalign/Manifest index 94722170730d..183074917044 100644 --- a/sci-biology/kalign/Manifest +++ b/sci-biology/kalign/Manifest @@ -1,5 +1,3 @@ DIST kalign_2.03.orig.tar.gz 114022 SHA256 710318fea8e3091da6fdedd16d6f94b9de069846afa502f4fe00d5d6b07511c0 SHA512 d60152bd7124f77ea972ea7dac19f47eb731646a12ecafbee8a99335c20a36fb3ce2bdc633b346e4da1016d8e56a0f297f9b33c9b6285197946f404dbc390b0a WHIRLPOOL 1793aed6e0c56a009f34d65a7dd36e0765de8bcb8fdd92590de677470f72b198bcc6afb0ceefce8246c38e7664a2ddd5ff446f585d782d8005c9ad8a8a79c13c -EBUILD kalign-2.03-r2.ebuild 601 SHA256 4a6fc67a975fe2b4c7afd07f540bf6828c2e5bafcc7f5761ed2c081ba1ef7225 SHA512 f19df61247a35a5a03164ad1a01968a078be043e53f53ff62ea35ba20787d84067fb4cd9212a9294a26270f95c7702ffdf571691df0311856f1de1973d6012ff WHIRLPOOL 27628257fc129db0fdfd2cf7c677b8068753ed2e8d5e74ba15cc32312cb046b8d747995769fb010f11a7b47049f488195a5d211e74278f755b29996b8a65df8a -MISC ChangeLog 2479 SHA256 cc8f03a314b443f4999c827685ee5cacb008161e0b167321ac4924981c52abc8 SHA512 b2f9909ab00f82b23d0a192f145219e6f9d404a6cb1e1aa2a4a911eb07af0749344a896f50d2f2c2bffe572c791905866500a7b4ac3f5a5e4b4a92a8918d95f3 WHIRLPOOL dd053787258b1b3b4cdc8e7e58705c9bd5a7c6f7d29e4d43a65ac38ac3e85cd1a3e8899e1615196ee6b4b188e0762d80fd2eafb4414f912f9b84fc7b4b47ac8d -MISC ChangeLog-2015 1215 SHA256 355eebb9633be71745c1a24d0f9efd43f28c84b1e1b2829019b5ace593fbdee0 SHA512 7b76e54de90eb5b58d194f7d8b72b1e51e79eba8bc216e4e8f251df2ce32b542bbca3a970b9fa737d0e6378b1f04644db320fdf2f0bf735a634c99625438c930 WHIRLPOOL ee820166c502ae50897c738872118b2e0f53e4c05b03111db0b067a2c4cca7134b1ed94deb253283992299b76342bc5ff7e68bda61b1f9102632eefd01f2d2bc -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD kalign-2.03-r2.ebuild 601 BLAKE2B 4d988368b81b04012c426de46f87d8287a685617eee1c727a899a9c1a5165130970d08efb5f48b1afadb947ec4a6a0effabf56de00c9eeeb08ec40cc482e58a2 SHA512 f19df61247a35a5a03164ad1a01968a078be043e53f53ff62ea35ba20787d84067fb4cd9212a9294a26270f95c7702ffdf571691df0311856f1de1973d6012ff +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/kallisto/Manifest b/sci-biology/kallisto/Manifest index 5ed38ff9ece7..3273e43c9dec 100644 --- a/sci-biology/kallisto/Manifest +++ b/sci-biology/kallisto/Manifest @@ -1,4 +1,4 @@ DIST kallisto-0.43.1.tar.gz 1067076 SHA256 2164938c2c61c04e338c4c132cf749f56d39e6f0b4c517121bca1fbc218e430e SHA512 c7725a2d649cf96fcd24a20d542b409777cfd9fe97c09f0f459a5ec2981e0a4f5f0ea03d76d3ec3edf0e498c799fc7d074d442d5e35ddb4043d1f7634619dda8 WHIRLPOOL a0f8c2cab5afa3df7cf7f540319d32a99d698ac50e4574c941972fff789e9d8e258124153d16a777180595b201d91e240e5ffd17994cc2571e71f6fcb47fdeee -EBUILD kallisto-0.43.1.ebuild 573 SHA256 06b09d70b72ee00819c1185d503d3b3e0a5c8f60afa22594554c618153ecf709 SHA512 bb8667422d4015ca7a3aad912385b5322b83c1122a99f79893f527c886cbc05049f2e37f7cc85d2c789994ebd477b9ff60019e4c91b7b95f65a51dd7343c4aff WHIRLPOOL 26e198e8a369eeff6da2da14366bac57c26ea248559afae434a63be3003178a611ce823d5fa695974c6dd6878fd0d8fb8564035243add21e9c7295ec6fd191f7 -EBUILD kallisto-9999.ebuild 573 SHA256 06b09d70b72ee00819c1185d503d3b3e0a5c8f60afa22594554c618153ecf709 SHA512 bb8667422d4015ca7a3aad912385b5322b83c1122a99f79893f527c886cbc05049f2e37f7cc85d2c789994ebd477b9ff60019e4c91b7b95f65a51dd7343c4aff WHIRLPOOL 26e198e8a369eeff6da2da14366bac57c26ea248559afae434a63be3003178a611ce823d5fa695974c6dd6878fd0d8fb8564035243add21e9c7295ec6fd191f7 -MISC metadata.xml 574 SHA256 ea8f0878ecc78b897b0dda2d342df7062ecff912790cb0c407929526e6313b3d SHA512 322d73b8e377ce74593d5c79a4e2f2041ab9313d8d5f59866e148ccda89892fd4fe56a7f0c8d12458f97de52efc4e933044788ad24fd99ffd4fb81dbbc2b2bcc WHIRLPOOL 93e91e065cfc28afe65738fb66928bbd938fcf168543cd75f0a724074e0c5e42afcbd51ab79f824344f7055caedc5bb4c43b0a29a6740056455f029752dd6af1 +EBUILD kallisto-0.43.1.ebuild 573 BLAKE2B 895c8ccecb6b882cde7672208bf070f1b0de70ad15fadce89e0296f87a93d011a3de096d548bdb3e788e215767a7f6e0673c160fe82fb50fb4256653f9901a39 SHA512 bb8667422d4015ca7a3aad912385b5322b83c1122a99f79893f527c886cbc05049f2e37f7cc85d2c789994ebd477b9ff60019e4c91b7b95f65a51dd7343c4aff +EBUILD kallisto-9999.ebuild 573 BLAKE2B 895c8ccecb6b882cde7672208bf070f1b0de70ad15fadce89e0296f87a93d011a3de096d548bdb3e788e215767a7f6e0673c160fe82fb50fb4256653f9901a39 SHA512 bb8667422d4015ca7a3aad912385b5322b83c1122a99f79893f527c886cbc05049f2e37f7cc85d2c789994ebd477b9ff60019e4c91b7b95f65a51dd7343c4aff +MISC metadata.xml 574 BLAKE2B 6f48c88742a02cd19d181593a85b6c17e03d85cf47f8db9dc8696edc0d1cb8f47afda663a88e0b2f213dcc5ae59a9ec157d55dd68547b9c7ebad2cc1a5612d67 SHA512 322d73b8e377ce74593d5c79a4e2f2041ab9313d8d5f59866e148ccda89892fd4fe56a7f0c8d12458f97de52efc4e933044788ad24fd99ffd4fb81dbbc2b2bcc diff --git a/sci-biology/lagan/Manifest b/sci-biology/lagan/Manifest index db4846150a7a..53be96f0f6f0 100644 --- a/sci-biology/lagan/Manifest +++ b/sci-biology/lagan/Manifest @@ -1,9 +1,7 @@ -AUX lagan-2.0-fix-c++14.patch 13525 SHA256 d7c7a98101911c15cdbea1b4f1ce3ace93299151e9665a7c8b0f1148427ed3b9 SHA512 f62b523cf9692a1394276ac674ccf7ce9a0070c646c95d1f20b8e0ace61afffd04aae3a098511bb106ab62089e70bebfae6ba25aaffcccbbe7f8397a30c2900a WHIRLPOOL 2332dd6fbf1831c74b1e8e863bbaa7649e2ea70872d9890cfa0cec0ad4f64c16dd0791eacf3bb52d17981920de07234c8642e85fe1df3a5e5de48f27fe719ff5 -AUX lagan-2.0-flags.patch 5848 SHA256 258c3fdcf1eddb4f2282cb45d6113d3e056f42c87442cceef24af463d0e9cf4f SHA512 63917ed217c44cade1c87dd6498cb7f6180c30eaba3875fa77f7e73b894aadab1469aca87650d1017a44fcac548552c3bdfcaff29b24023d23c7424079ad91cf WHIRLPOOL 895cc7aedc3c3504acc94796002abe8d6be36e1ab799e272d9034ed19cdb1f37f8d3481b925c63797d32ff5fbb343b7b07151fe4dbdf42a10de9632cf675b498 -AUX lagan-2.0-gcc4.3.patch 821 SHA256 e0575359288e7de97d35a7cce7b92c5619d2f75026beefc9139042280aa20a22 SHA512 91b56b0cfc27f799fed164a8a32b4840ea2e7f7796d334b2bce8bd27bc2fb96b4cdb0912c737c874f767a16ffcdd4e4623a0f80a35082aa4289882d1502cc0df WHIRLPOOL dd6cbe280e3fe69c3e1b3c1cf706cafb3521be394575481eb3595c578f2df069f8717195213abfcb6ce1f3576a8943d7f9823112052b169c24f8d03bc8e6807b -AUX lagan-2.0-qa-implicit-declarations.patch 2371 SHA256 2fdaf4c16206300f89d447d05f06a66a77620f6aa1a402f5e2a08e28a97a0b0e SHA512 eec54cec02a5c8c875a4d64238276f116baa8f3d780573ca5143621ca62a1e96ba4045ae37d45321fc040b78216607d787c2c6c909a8264f17f99a0e07295bf5 WHIRLPOOL 63dd394b1aa076c1b0a46a9afa96033bab468370dbb7888de351168015feb0ba21124a0fef571de5b82eed3d525aa443f2e647dafda686f7faa0c9e41f180bab +AUX lagan-2.0-fix-c++14.patch 13525 BLAKE2B 79037fa65301393f3a007adb424f4a88f72f46ad0cf7c310a07f14b64437fb8fd3dc6da90df5c79e468b424a895797cf01e5b30413435a18ea933d912eb0428e SHA512 f62b523cf9692a1394276ac674ccf7ce9a0070c646c95d1f20b8e0ace61afffd04aae3a098511bb106ab62089e70bebfae6ba25aaffcccbbe7f8397a30c2900a +AUX lagan-2.0-flags.patch 5848 BLAKE2B 41394e65d15be217dea753a9641ee72833ff87f5101fa19ba009f4ca4b97d8fe22594d041105ba03ddb53ad83f635fec79e9125f539eff3cd1cbcdc186d3023e SHA512 63917ed217c44cade1c87dd6498cb7f6180c30eaba3875fa77f7e73b894aadab1469aca87650d1017a44fcac548552c3bdfcaff29b24023d23c7424079ad91cf +AUX lagan-2.0-gcc4.3.patch 821 BLAKE2B c25d5afef654a27a61fb658de4fc26afe713400133123b47202fab8861c95b6ed56a229b0f88a811b5dc36e94125d0c333c6b13a14e1f1ff944c68c2ee3acd1c SHA512 91b56b0cfc27f799fed164a8a32b4840ea2e7f7796d334b2bce8bd27bc2fb96b4cdb0912c737c874f767a16ffcdd4e4623a0f80a35082aa4289882d1502cc0df +AUX lagan-2.0-qa-implicit-declarations.patch 2371 BLAKE2B e6ad9e67c322271fab92bf32094903d201f5cd81ce6cbf5f5f14708d53eac649024ca1c7e378a2a7ee26b0e4a7d99b275476f32ec32d1e20575d09dc9e2845c5 SHA512 eec54cec02a5c8c875a4d64238276f116baa8f3d780573ca5143621ca62a1e96ba4045ae37d45321fc040b78216607d787c2c6c909a8264f17f99a0e07295bf5 DIST lagan20.tar.gz 589115 SHA256 a65e61ed4fd6608f4e5ad5b11a1b77f4fec1a207d822c5885b3e86727496e1fe SHA512 f77217ab534df33834a725eb6e1b716f7bbffa98768a42c2294a6ab62404192e560bb05ffd41e4cdccb5b96ef9efceb8ecdc06472bbc6a301e1d11572ba29b98 WHIRLPOOL 3400b8da7dae1431f18f8aeada17161f48d8e548f79d312cf153dc9b360f1bb7103fc6ff799d798c46898d6f62928a241146e09871f1b40e93d10118ca71a553 -EBUILD lagan-2.0-r3.ebuild 1659 SHA256 8ae3f84d205c9064b40dc32a709e470457f74774d21e6ab477a659711835b97f SHA512 b5efe429851ae0a3676a6e63017ebabdcae169667d091b2e69c0c2daa401f34e0ff3b789f8bacd78376befc466bb20de8f0d80bae63c332a6c412f01794f457b WHIRLPOOL ad8741e76441265976d75e1b8a0b3c3c204b60a437cd6dfb8db65b08dcf54dd9b485142b0b44072b5b258ecbe2ea256b79a198563615d0b0212b425349aac1f7 -MISC ChangeLog 3075 SHA256 4ae47c42c216508fc7efe046bfcc256d60a2130fad10930f4fba7f9cd5445647 SHA512 ec9097994dd597f31f0c7998a3b69370d5870729c2a84366206ec2008e46b265ec3254b829bd3c7b6cc3155d899e938664bbb34dd6d95625db2ef2ca6249fbca WHIRLPOOL b3a696f08a9306ed58349b112d6764eaa4ffa0fd7016a71960670230c5d17e4ac1c3069e8f3f8669dd5920fc635f743809647a1d823017de9308218060c2b3d2 -MISC ChangeLog-2015 990 SHA256 f6053e432b2071a1b37fd0d1f99bcff716693104eb3b0194e66bdf751c786dcd SHA512 8c0583b884882009dc1c431dd44cd93ac4b8c3e8a8623255027ececa12ace992141db5ac75cd4562504131c85c0f471b208faf8a36508b92028280bd41447c31 WHIRLPOOL aacfaa6f338065282b1c37ac3dfbc67ba4a60086bb2e2e74699a63877d07c75f68daa8b32770ef114abc3c516c0fdfdd8b5fb3d615f3ff15eda718669b88c7f2 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD lagan-2.0-r3.ebuild 1659 BLAKE2B 0ee31ba110a6238ac9218fc3d59347c9ee97fa11ce097c0a1f5e53c45fefa74ed83e35a1314e2f7fd57fbb3bdb64863109400af32f39f6dba13c273d722ded99 SHA512 b5efe429851ae0a3676a6e63017ebabdcae169667d091b2e69c0c2daa401f34e0ff3b789f8bacd78376befc466bb20de8f0d80bae63c332a6c412f01794f457b +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/last/Manifest b/sci-biology/last/Manifest index ab42266146cf..3ee8985c9c30 100644 --- a/sci-biology/last/Manifest +++ b/sci-biology/last/Manifest @@ -1,9 +1,7 @@ -AUX last-299-fix-build-system.patch 2021 SHA256 d963e2478ae16605d41fb152ad5680bbf7940ae114e583696790d512c4587a4e SHA512 42df26ce39dd8d263581f20aee0a3fbea0c849fcb5b1627554f9d0b3d3cea55a13b7f42fca9048611a50fdd9e784fa2b537a876b6ded411601c78b2e13e2e19c WHIRLPOOL 688375499b15d031fd55f68a8337e45418ced59bd374026950fd21e0bd6b6af1aa0d026306c591ef6d350de8219091434e13b1fd70aea054fa69c946b5f9711d -AUX last-299-portable-shebangs.patch 2762 SHA256 79c7de9eb995bd645ca0ef1273ea9ae75b2d4753e9c2ac0de520181e2e3d58f4 SHA512 343483b421e79996aee5480608cdf8b085e8c9c48f5b1f6a6e6e6bbddca9f8d9e1e3561924bc29bc9c60f30cc4c5e7e81d79e60847e35b3a9f7a53f7e3b8c3f6 WHIRLPOOL db49e2271a961a7ea7a3e9c6349a82f81f9bd21b692d9b3fb1148ef979c16e6e83d5eb9850075319a9d923c003877733620a3f70244935c610f1b6a68a00b63d +AUX last-299-fix-build-system.patch 2021 BLAKE2B 6b2c1e5830c0076a444841c9740bba9bc5389dd1996efc2ca79989d61162f1594e46f0b7b982a7d50b25284e6394e0e427f7dfe3fc7cc22dbdc15d12f3f8a11c SHA512 42df26ce39dd8d263581f20aee0a3fbea0c849fcb5b1627554f9d0b3d3cea55a13b7f42fca9048611a50fdd9e784fa2b537a876b6ded411601c78b2e13e2e19c +AUX last-299-portable-shebangs.patch 2762 BLAKE2B cb92f32c7118cca83114ffb534d0db04d258a63825592721eb80ed0a699aa9adfbe0df6eb0b33de8647e238b295103632333e89847b9a6b1b4bea9e940113316 SHA512 343483b421e79996aee5480608cdf8b085e8c9c48f5b1f6a6e6e6bbddca9f8d9e1e3561924bc29bc9c60f30cc4c5e7e81d79e60847e35b3a9f7a53f7e3b8c3f6 DIST last-230.zip 418077 SHA256 8d55ee95e05a08afa72690df9086886e97142adcfbf750cf5cf6015b91215484 SHA512 46c858c2bd4a9aa00ac3b448ce78bdee6c1edd4f6569cff3c81ec8a7c661d89a9b5e7a888cbc6da190b243f0ec83c485b4574dadc6a58669d9b955eb70c329d1 WHIRLPOOL aaa0483a58821cca0fdd7875cb4e7c62493fd724729d957df1d51c7612e92e3acefae2727789f63a248f02c976a45c3209d6bac2c39f54d84f02d1106c2d0f85 DIST last-299.zip 453159 SHA256 cc68e9c0b5220da67fd0239c9663dc0d1a05e63b337a6c98cfef6d5c38d0c54c SHA512 74e89129cc17482ec1a99e2d940ca62374c130fea2fa53ea7d2c3703b6ca5751f348110909d61562c4839d8fb1793619c2f41c25c8968b3ab53f0c7191f4a00b WHIRLPOOL 12e826c22c2d91845e89aa0c6e99af785973e8a276dec4f97ed292e144327c7c58024622d3f7285c6107bca7af1bf3c29a23ec9d22dc88ff5dc041a0df96f3ce -EBUILD last-230.ebuild 710 SHA256 eb99af8d511ed321989eedab99360bdb0d40508497995339050193d168bc7269 SHA512 dc8a8ed6a4fd31daeb188cd79da40593e71ebbcc9567815ea4d445b033fe82ce6730af4e82cd9c2a5e17e07b97193b91ca2f034c636cfa7aae815208c1f3c591 WHIRLPOOL 312056810c29b56feb5ad3c266571edfcc76d7de82cb4ceb4fb26a1cd0abf3639479ff6b7b30e164fd7a09fb81115dfa88752014fb4f6e2c13aebb5479ecbc3f -EBUILD last-299-r1.ebuild 843 SHA256 9c07fdc5055a051b2fa6c5fa7b2be074ae422d3a72e03d45d3a17ad320d62a78 SHA512 7892c3a4ab3f6a23af11a5b548f4f7d992497c25bb4eed8e0a9dcac3da9b9a41d7b8f2b97f88599c7831fee5c064b421b0876fe0b3c444395015a4a0918f57e2 WHIRLPOOL c3ef323bb099c34a700b46467c66eb2af4b274dde3e1da8acf20533724000a888c0ff27ccb753d423d21a810bb5db3c0458db1e6e5b5d511a3ea122f255664c9 -MISC ChangeLog 2847 SHA256 9544554cb68e63816bb0e828fbb40615102db57f2d93ce99d7a11436c19824b5 SHA512 fbd3a490a48f89d8a3f5e7ad56f8e4448cd6f477635956e3adf1a2ed5e92800b155f01ff5031452bfd0c3afe3674f68b9ddee19ba371be799c960c954ad947f4 WHIRLPOOL 4632684e3964e3b9ff89e2eeca8ec6948ab9577e577c33741dd8f929972393e3eb0d68b972f1f8973467fdbf385d4f458b2ff470e0f0ede317971d56b61bcc14 -MISC ChangeLog-2015 3254 SHA256 4908f33d57ebe1598f3e134db57e86213fb9c11dee4535e51a7049bdffa19145 SHA512 c7cbea0b018c9b171a0948ac272a4e4d43065ade440a206922a356bf6351de2bd60fed4d9d4e99df51bfc9a6b6ebaad3766cf260f49885dcf1aeb3e7000d7fad WHIRLPOOL 311707a2b58ff4a9c6f08b5e7fa18066b5c594d2e725242c47d2d393cef27a8df36cdb6cf4f883714cbe07a8c9ba4c83724cea71c6037b9c9f7de718c9b6cd34 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD last-230.ebuild 710 BLAKE2B 23d3d780d35ff8bdd47f664d716acadaba66b3b29982cd5b9ebc4f12b99eb4207cfc2b7474f68a8d6bedc157f9e0d16548706d952b901902c0478822f67d6d4e SHA512 dc8a8ed6a4fd31daeb188cd79da40593e71ebbcc9567815ea4d445b033fe82ce6730af4e82cd9c2a5e17e07b97193b91ca2f034c636cfa7aae815208c1f3c591 +EBUILD last-299-r1.ebuild 843 BLAKE2B ce536c49888cb0ca7620c24f1767c95b99547f9b05f5dabe744884b6bb1b5f6c19ca3cb8697799ef0817720b52fab870ec508c70c82897bdf3581e05b16e3112 SHA512 7892c3a4ab3f6a23af11a5b548f4f7d992497c25bb4eed8e0a9dcac3da9b9a41d7b8f2b97f88599c7831fee5c064b421b0876fe0b3c444395015a4a0918f57e2 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/mafft/Manifest b/sci-biology/mafft/Manifest index fead05e00a48..3f5aaa433204 100644 --- a/sci-biology/mafft/Manifest +++ b/sci-biology/mafft/Manifest @@ -1,10 +1,8 @@ -AUX mafft-7.037-respect.patch 7463 SHA256 eeedc574ad5977661ea879eefaa1c4b4d428384f25af891c1fcef16e6bfc6293 SHA512 ba706bc83b1c249c08fa7e39d6b80df42be058ea2e68baf1028125dcad289764ead3a6269e557bffc62da87a7ac2ff9856a602e20ca5eae052060d44b431994b WHIRLPOOL cf340ae92dec7ac35099706e5f2a31ac123b341391d2ebe25d4050fc470bbc295ab51c26612c4cc6c659abfba48c355df170b5352b2a6b6a04e8eeca6f453bb5 +AUX mafft-7.037-respect.patch 7463 BLAKE2B a7218e21a08452aab65ea544cfff91a0a88f3400e667cbe945848cba7507b678e9c1d1f03bdb4b4b3b1d7b43df2a3f2097090f588274c04f6ecfe53436149245 SHA512 ba706bc83b1c249c08fa7e39d6b80df42be058ea2e68baf1028125dcad289764ead3a6269e557bffc62da87a7ac2ff9856a602e20ca5eae052060d44b431994b DIST mafft-7.050-without-extensions-src.tgz 380375 SHA256 29ddb276bfca24f5815acc41f1e640a705bb12c9d29b7c74902ebca68cece7bc SHA512 ffddedcd03f37241b1493a62bf843eb23caa04089bd0182006aa7669f74de27204d324817e22fec1cb4ae11c4c226db5b725d03ba9f73b30a71ca3d38368d73e WHIRLPOOL d46d7d4dfe453bfb54b9e418308772fb063bffce1d6d45d92262bee45504301daff9a6e57ecde41912a6c11852bb64510fb5ba6df04c7e79dc671e7a31444d49 DIST mafft-7.215-without-extensions-src.tgz 393239 SHA256 22099e42274ef0078302d7cb87180880ee5fd64ef15fdcafd8c95d0018191408 SHA512 1a44b968e2f9ac9db5d17487163a38a7138dc784e63b3aa4082ff6a16c8e168edd09948e2cf182bc7a466802d4a07bdd7ab23386e251df13520acdfb69ebdada WHIRLPOOL de43ba4107e3c1149d5ce47085bacc996393a7ef73535777439b7024eea1dce5f28c1b3c7e518f644345b7b5ea5e70fccbcaba18f16ecb9a6f5f5c31a6b5dca4 DIST mafft-7.305-without-extensions-src.tgz 458448 SHA256 194503ee6dc9826f5098ac0fd9283034dfee8a1be1287def437f5854dea9317e SHA512 2aa351dd9b329024f183642cd98287239d12a00a2a65937e072560cba54925bed1fab19fafc734d9a5048ff85151560193ddb0796e0d7510d921fafc4553ebb9 WHIRLPOOL 85e9cda397853692f737a4e74159e67e0303076c28d94b85d4039ffe17b72c9d852a8af85941eaaa0fd73e0f1cbdbfe5b6a68e8ad5464506fbb38969f137a1b1 -EBUILD mafft-7.050.ebuild 1794 SHA256 6d828e21936ff4da139a9428b14650f8fa85d659c14b26b890b5490bede7169d SHA512 b908836f2024be4a6315333a84708379e5f4213b179b4c104365f4d0c5878f90602548e9a38d3f11330513f15522094c34aa5cd0e6bc60250c68d18a9d2dd09f WHIRLPOOL c58a2d20101258f53e6e894d0110c3d68e568d9252e21da9e87b98a303ab2df34ed15d44afcd6b7b0265b40bf77922a867bebfcdc3cbd2890cab4c170504226d -EBUILD mafft-7.215.ebuild 1974 SHA256 f05b0c0fd4e7a3bd1a4c34d8c253318fc965e28c48506014a920396b3b81a4f9 SHA512 787a8bf04c3a5d894328331a5908aeb1c1b0850602d145345965cb740beef75be90bf464a9b8519fb93c691253c05665e62a099b72b39ca7081685755c2c1a8b WHIRLPOOL 81b03148e8aaf3c565dc7a3920db9dc21fddd774ce3ad26b310f53624a6d636c92f3b9eb3b09a552c364bfcc8e89f91402f2ecc957470c12717f52e9849fb0d0 -EBUILD mafft-7.305.ebuild 2013 SHA256 e5f702e020d36a3f6707888857234bccf9f3f80f60a22f86d4d90d46d46e262c SHA512 557a10cb6c9dd0690b7d4979661780597dbcfa110df924250d2b9e6a3943a6f0876c73e803e99c5733fa223c79760fc9e37ef45879a75b2b934452cb86c1615b WHIRLPOOL 24d123737d357d67378d6dcd4ca286ca7825a00f4fed965a6cefa45c9810b64fc1d0bf071ebed444cbe1ba0df72e67d827feb1c5a24b003d0237fc49dc5f4d15 -MISC ChangeLog 2703 SHA256 130559f8cd746a02e79bfc373bfd03cf6791727f16b4fa10d24163766d089e50 SHA512 f37f0113b13582265330bb0ce4894213b0a432c20c79f9238d12cb5e3f700e2e00372f74b23dfd6fc8150044562b34e8a19f7f716b61112be85d06308b1c854f WHIRLPOOL 7ac705e03de52f67b07cc4259ff3f7ae5d0ae14940f136b9187e6732cd6de33a3d97e99e02a0e0b68fdae7be93c447c2d1032a613eafc44708e2970dda17c355 -MISC ChangeLog-2015 3896 SHA256 ab05832fb272023664f91ee73d5ab266e21ff0f102fd6e82bd624398b2b87dfe SHA512 9aac609a3d28937b353955fc9e586d0f302e0df7c03c22f4224b03f369916fd2b6f02cc42bd23d8d738f843222d3cf39b2847cd95e821443bcc1e515b17d5d05 WHIRLPOOL 2a24f13c56b2c90930a7604346e168b286c941b97319478bfca4f5c7afc72a9d63f6e01fc27dc404468feaa6ec9b34943a32c14908f2903b606d884fc300491a -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD mafft-7.050.ebuild 1794 BLAKE2B 01645a61932c32fdc9f7394b5a59ff548dddddc99a4bca57e0dbfde10a4a71408635db5285940efb526a4d2c91506f87bfa5cd68f6730dcffe701631e6abcf03 SHA512 b908836f2024be4a6315333a84708379e5f4213b179b4c104365f4d0c5878f90602548e9a38d3f11330513f15522094c34aa5cd0e6bc60250c68d18a9d2dd09f +EBUILD mafft-7.215.ebuild 1974 BLAKE2B a115ccd3488e9786f8b34ef2bfa68f0f283fecfe78b9b94e48d803eed3f88f70d2044797d96f4ee591d03b91405a23e9dcbe41ae8f1bd059456c7e8c1f453c71 SHA512 787a8bf04c3a5d894328331a5908aeb1c1b0850602d145345965cb740beef75be90bf464a9b8519fb93c691253c05665e62a099b72b39ca7081685755c2c1a8b +EBUILD mafft-7.305.ebuild 2013 BLAKE2B a48c0d9f9ea5cfdb951a84c97003b9faf048f6b658f66b9aa1ca5a45a6dff2a7081a989d33ed5509f01f4ccfdcea12d029c2b97d9ce6bb74014cb6951da1d4c7 SHA512 557a10cb6c9dd0690b7d4979661780597dbcfa110df924250d2b9e6a3943a6f0876c73e803e99c5733fa223c79760fc9e37ef45879a75b2b934452cb86c1615b +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/maq/Manifest b/sci-biology/maq/Manifest index f26a3ced4353..0aa43fa567b3 100644 --- a/sci-biology/maq/Manifest +++ b/sci-biology/maq/Manifest @@ -1,10 +1,8 @@ -AUX maq-0.7.1-bfr-overfl.patch 527 SHA256 ff7521f696d4deb311f3dec07997bd8cce068749369d6cd3d3e65fb6cce19e56 SHA512 953587e9354f2d3a070aae67ee999105b96678b2b781b9fbe8416d040a594d1db2ed6e7de0516cd29c2020de5129bbc26b78b7bfa5a258ebb5cb9fd4715f8bcf WHIRLPOOL ab41e0d61d75caf9780920eb87bd2def0b6b1006860b60d43d5fa8f96dc6a1956147073b2e6b186a64cb977c055a4e6133f12eb7d925aecf7c650a1cfdd3fed7 -AUX maq-0.7.1-flags.patch 799 SHA256 f1949b063ed015182e403668dc19466d079eacc6d351d11cc5d099d2aeeb18f9 SHA512 f13d8af7884691f2d8c8e9bd9d370c5ca12e863aaf05e156a964ba88053d86dcb63f24169fbc3b2a9264423510061c26d88904b87ea8aeb8bf446b51e190aedb WHIRLPOOL 6091105a0f1606bc96a5da85026da7dc4acf4d9900e9d26f64e353486eb3e1fc90862c5b16f3709a19019ace12313bb60af4e7603a4c8c49716f878c96486cfe -AUX maq-0.7.1-gcc-4.7.patch 1429 SHA256 df958693a9eb428069ca09410f549b22444fbd1818fab6101aaa03e658f00250 SHA512 e2936757fff7f32d8dea3da3181839b7b4190a15f4bfb5c3b6cb6a723a10ba8f6e4f762eca32387345a4263c9bf525a425d5e58c78f387a1813508fdc5fb364c WHIRLPOOL 244d7656f0ca1db364068910bd1042363ebcc7933506ad2e17c653e74e76ddc8b9862a2b84d82eed87aaa35776b964eaeaf70069f9e47418a1f3f850f3a91f4d -AUX maq-0.7.1-remove-64bit-flag.patch 787 SHA256 83b88bfc8f9035528460c5f194195bf33ccd9affb574e0a78198828143bee894 SHA512 4864453afa79679c253b17a2b125bf0b44c1a05a6ae6341821382991217026b599437288a1c96625cdc2a1fad2cf73c79798a230bbfccef46e1c92012a6c3df1 WHIRLPOOL f77db9e0358681e9e140004b74544754d8c91fbf254d11610610af4acbe5f1ba045127d93e00fffc8e7df2f36a5cea4e3b5641ed026d5f8a7aa67f7d9c6d79fe +AUX maq-0.7.1-bfr-overfl.patch 527 BLAKE2B 41a4b6bff80faa02158cb4a7884e47c9516394f93e46686483ab9209b2c889ca49c756d4e3516ba58fb2054fcf22828ff94affb877a54ca6cdf6806b5dd0ac8b SHA512 953587e9354f2d3a070aae67ee999105b96678b2b781b9fbe8416d040a594d1db2ed6e7de0516cd29c2020de5129bbc26b78b7bfa5a258ebb5cb9fd4715f8bcf +AUX maq-0.7.1-flags.patch 799 BLAKE2B 2f65c9357d8fbbf5cf3450a63b0a6e322472bcc978829d9245e522e2a9d83aaebe52b87e34a231dd8cb319864a8e54761b4f0e98f14e2436eaf8669ccb52caf0 SHA512 f13d8af7884691f2d8c8e9bd9d370c5ca12e863aaf05e156a964ba88053d86dcb63f24169fbc3b2a9264423510061c26d88904b87ea8aeb8bf446b51e190aedb +AUX maq-0.7.1-gcc-4.7.patch 1429 BLAKE2B af81651b07186eed305d70534e9f7c41375f60a8376878da80180503daea59a30de5ee726b0b9e87cd45ab6a3e033e5ba1d09a4e02a84c8b723dfec72e6dd068 SHA512 e2936757fff7f32d8dea3da3181839b7b4190a15f4bfb5c3b6cb6a723a10ba8f6e4f762eca32387345a4263c9bf525a425d5e58c78f387a1813508fdc5fb364c +AUX maq-0.7.1-remove-64bit-flag.patch 787 BLAKE2B 2e94066962194133ccdae4095d3d6bf6f058f7a7d5d04f8737e03fc725508b3e291c76554418c6ff9a15969e332d340b86e11ae3cab90406ec60e9ea63361f5e SHA512 4864453afa79679c253b17a2b125bf0b44c1a05a6ae6341821382991217026b599437288a1c96625cdc2a1fad2cf73c79798a230bbfccef46e1c92012a6c3df1 DIST calib-36.dat.gz 196371 SHA256 d4480e04446eb273f1908add709dd5a24262c08a59a1647b9a2d053f4d30181b SHA512 1033ad47b31882823f71f16054f366a6853b4b5e1fb286ab2c5f62c1409ed20e6dc0faec7e356350e91c71d25a198d8e0d7a521b3662b5e2fae22af44098e8b7 WHIRLPOOL cf060f27ba191f234f5db2a8c43a70bb03e4f9625fb73dcdcccdc342a9baa8686602fc92eaab5a68d4864d334852a90d665cc50421dacdf6257fb96f47f5829b DIST maq-0.7.1.tar.bz2 368645 SHA256 e1671e0408b0895f5ab943839ee8f28747cf5f55dc64032c7469b133202b6de2 SHA512 acaba2d172f8f4ef7a2b1254bd220f134a5eb8e4936af16bf7fa6695d016e6b6fa9a5b00d073ec1ecc0ecc39dfb1c9700c38fd017edb5bd49a83de383cb0d30c WHIRLPOOL 5e00112a0cca7646433b53f799e9baa088048f9b6b5577e3a633d23ac78c2d79169fe00f3d28ea7e304b73605b7e6a5c97e0d051881072955a936f1b3b0b8a21 -EBUILD maq-0.7.1-r2.ebuild 799 SHA256 1478f732dea1917bb9816dcec3cb2d967659a47e4f7069a9cc5a90c9fbdf4637 SHA512 5e52158937efbb822f9e521ec19b76a3dab1d6823da94cc154947d1024d2aa59bab00b111eb9d3d3e23a59782f2069ff4aa079133fa4608a4aa37e623e14c265 WHIRLPOOL 0c77259845a10adb180d6a6879934f30e09e87ba422539981c737e05d281c9dd3ab4539ff0663299053e41ec9a8b24487788af481ecfb4b35332245323c35911 -MISC ChangeLog 2569 SHA256 8678a35c30639699aa4992f76cc26d96a039e15b1ed73220307f251c40636fc1 SHA512 17db6913d41be3493da79df5015173007215efa4b8dd309bf7b8b826eea134460bbecd85a64c0c83a7ff2584e7aa5ec24aaa75ee5fb1dda40a295a160872cb37 WHIRLPOOL bd5b06241e6bb89c3db4f2fc711c96a9e9cad0436853005048499442569b95d0d340e42389b1c53df5ba83808f733a2669a83315835b90d5f91278d8d2383a4f -MISC ChangeLog-2015 1593 SHA256 11a721662c24da57a4547df5500eb4f67e45ba788b9c12ede57861992cadd88b SHA512 dcc4634336b513ef01f06c269d65c2b1ca55b6cc0436521cf552d6bdd7cafcb29617cba552ac0cbcbfcffea20154aa1c92b68ced341f3d9a423d9c9d7db2d99a WHIRLPOOL 55d882686d50124d8251fa3101361aa180feaf7db0dd254208e6661c7d83a3cee433bf12cb64c45ea2f0d6ae659e877a70b36088dc5b099a0c6f5aead25609cc -MISC metadata.xml 344 SHA256 e7635c034b39ae80b82be3d5b388b8cbe8642e948d699f8b7a208b75618f4991 SHA512 01962a043f6efd23e14570c486b43f89319c47d040fe94324b67e077cbc755435d236eb736e70c5fc582798c8765daa0f85a1f39a3d18ab27bff171fa7765e45 WHIRLPOOL 9d8641cdc4d97433980cd5f9366ddb94e44d1b179e75c5fc17b54a64d0e64e6b17076039efc9cb5c5449fa1439aa8185579afa5a7554472b400461d7f995f3d0 +EBUILD maq-0.7.1-r2.ebuild 799 BLAKE2B ea3f9417c26dd0926866436bc00e6f071d1c08d121c820affe7d4af42a55b3d2a356949415bd4e8ddc11d4eb3ab1dff330aead0dfa03f3236a93087fa3b666b5 SHA512 5e52158937efbb822f9e521ec19b76a3dab1d6823da94cc154947d1024d2aa59bab00b111eb9d3d3e23a59782f2069ff4aa079133fa4608a4aa37e623e14c265 +MISC metadata.xml 344 BLAKE2B 73666ae14f64c6b26032a175e23428661cfc81a88edafb0afcbd3a1fbb722682b44e3985aca00b1105fa2ba34b819b806a84a7bf4aaba23e9337309f0f3aea33 SHA512 01962a043f6efd23e14570c486b43f89319c47d040fe94324b67e077cbc755435d236eb736e70c5fc582798c8765daa0f85a1f39a3d18ab27bff171fa7765e45 diff --git a/sci-biology/maqview/Manifest b/sci-biology/maqview/Manifest index 105b15262568..e7dd04f4fcc0 100644 --- a/sci-biology/maqview/Manifest +++ b/sci-biology/maqview/Manifest @@ -1,8 +1,6 @@ -AUX 0.2.5-ldflags.patch 1335 SHA256 0876b98428f7964be91fb27f853458ba557ca8bf7eb313e416ece5a869a31efe SHA512 ae034ae1279e49c71f9daf658aece35063c56afc7ac3269d21d21a2f5b6f8e7974be48c82b52f4d250a9dcacfd5e8c9208b40c904ff73af8592c7f39395c6b6e WHIRLPOOL 8b4530a4220b8cd70fd1c33bb6dd19e6cecf8e9c434d9ca55df5e956b19ffa03f8ee7385ae369b6e7e291ddcab5e6d4ca6663744573aaad1080201314001a400 -AUX 0.2.5-zlib.patch 1437 SHA256 0952ca78e6ec4474063e2049294f432abe28890e76923fdb69b262a8a0b73d26 SHA512 7925f70d1f68bfa4fa87134d8ef20b05a6f022b1a9478a8e594e7b655852d858c0928b101f7eafd4e1ef44a17f8d353d49a6d1ede4072ac85ec452f75bd06c03 WHIRLPOOL 4b5fffeae840e49d372c3e8399da7cef708fbd6fbe45e2f5074751a37bdf0b66bb299c33ea2cc61b20abbe55e108b14f9d3bfc640c4aa89af3b0520dd34f606b -AUX maqview-0.2.5-gcc4.7.patch 575 SHA256 c5474002f6624d688fce6fea700334d09971987720a11321363631217c87e20e SHA512 277086e1d6d536ae368083032421029d64d5173e643edaafbad2833d56e8ec283152a49d9874a7142333e0fee976d3600ed118b6beb0482ec7e0e95f4a36fba4 WHIRLPOOL dfbbaf4cfe1f85b8aaa0a7517cbe62f3df861e3ccc8c64a45b865270b50091eb9b41d9c1cfb8286e736817b62a9f21358a58ff0413eaae5a4c04a6bccae41163 +AUX 0.2.5-ldflags.patch 1335 BLAKE2B 537a13dc3248efae0573a527cb40565081114886478fd1138f6e8815ad8ff95019d18167bf8e4a8c19821b06d1c8b10c978edda35bc1118d21783450b083f360 SHA512 ae034ae1279e49c71f9daf658aece35063c56afc7ac3269d21d21a2f5b6f8e7974be48c82b52f4d250a9dcacfd5e8c9208b40c904ff73af8592c7f39395c6b6e +AUX 0.2.5-zlib.patch 1437 BLAKE2B c8a8908ca6586f3fdff730c2eca39e54b3d08e8fe07fd6dc7ee6676f8a21c0943d939c937f47e3920286acec94b51daec64bf1e500661c661e054315de8d7e36 SHA512 7925f70d1f68bfa4fa87134d8ef20b05a6f022b1a9478a8e594e7b655852d858c0928b101f7eafd4e1ef44a17f8d353d49a6d1ede4072ac85ec452f75bd06c03 +AUX maqview-0.2.5-gcc4.7.patch 575 BLAKE2B 8e461d07e0421e5dc1e209e83ed3fccfdcd541954481bbbb1f478cddb9ff045c3704a086a18d6e7a8b255d226a24eca7d791cde9e59673c842a4094d56f03ba0 SHA512 277086e1d6d536ae368083032421029d64d5173e643edaafbad2833d56e8ec283152a49d9874a7142333e0fee976d3600ed118b6beb0482ec7e0e95f4a36fba4 DIST maqview-0.2.5.tar.gz 383410 SHA256 156794f114a00bb455a47ccefa50782441dc1b9668b6e7439ce0674060c085cb SHA512 40bed0a1005ca96fdb12773cd9c22ddc926fe722c64652031609a17a50ff725a3dc117d51f4f27eda68b48861da78427469aaedff744f29921236b486396aed6 WHIRLPOOL 0ba5a15a1317b4bb78458b9e282348983be9e2c30980aef4e35a9f5dacfff57226eaa4403fb0b9d9d448ba033409d548db224ed544ad365226a8fb59be8b743e -EBUILD maqview-0.2.5-r3.ebuild 608 SHA256 719fe87c607582da8c2b6cf50f9dd0296b5b935b2fd70bb28dac877b1e5d8d20 SHA512 71d33765c88d05e9d2c9c24c7d3bed6cefc194bbb4844a274ccb5b16380d8e1608acfb929b9dd8631adf9542ee3af5bcfd1cfed50f420b2d352d9b0d31eaf7bf WHIRLPOOL f590b13a08d314b3bfab5790f98707966cc10f8e6b582035ae7b7fa4c22ac5839bcc90d6b87f841260be19b8864c4b57d3882e9f5466f3ceea8fd325ba70d162 -MISC ChangeLog 2526 SHA256 c6ff0d1b78a0da57fd34e3779221f644aadfc9b5ff5e469b14616d2120701763 SHA512 b3a8b31668d4af69db4daea90f302c39b42b57e22a2c48eb64cf44405070ced1af360a70f48b49efd265c47b0480aa0d53693dbccf0871e6da62e1977e3b859a WHIRLPOOL 239e1d9c3873789680882540b6005d0bdd9a38d9ad1bc180b3041322d6a389ff7df136a2be13755655cbad41a61bfe1999361e56b0f298c1e15021b97c249e49 -MISC ChangeLog-2015 1735 SHA256 7a4e5bbd005f3618c3e7d610da81bbe06577af3e840eff90098da8dcc753a09b SHA512 4f350d0d119bf3b8394584e4f306529a91be264ded36af621bac3d971cc27e8b83da78679b9fe0afb54991bde515b2ddb6b0fc560bfcd6d0695c5a13a89d0147 WHIRLPOOL f6350b623c52b046a37e73eeed2b027f6dfdca84d8cbf49de989499c9f62add437363d58c39b524e0e9818c8f2548bd1c3e60f380e6f18b746a8ac38e1008214 -MISC metadata.xml 344 SHA256 e7635c034b39ae80b82be3d5b388b8cbe8642e948d699f8b7a208b75618f4991 SHA512 01962a043f6efd23e14570c486b43f89319c47d040fe94324b67e077cbc755435d236eb736e70c5fc582798c8765daa0f85a1f39a3d18ab27bff171fa7765e45 WHIRLPOOL 9d8641cdc4d97433980cd5f9366ddb94e44d1b179e75c5fc17b54a64d0e64e6b17076039efc9cb5c5449fa1439aa8185579afa5a7554472b400461d7f995f3d0 +EBUILD maqview-0.2.5-r3.ebuild 608 BLAKE2B e5ace31c7344228551c0889fd091a78c5d727fb1f3222d5dde51c011fd223741fcbd3954ee92c1b12406a7783bb952c6c49a5fdd154e11e1ecef17058b3983c3 SHA512 71d33765c88d05e9d2c9c24c7d3bed6cefc194bbb4844a274ccb5b16380d8e1608acfb929b9dd8631adf9542ee3af5bcfd1cfed50f420b2d352d9b0d31eaf7bf +MISC metadata.xml 344 BLAKE2B 73666ae14f64c6b26032a175e23428661cfc81a88edafb0afcbd3a1fbb722682b44e3985aca00b1105fa2ba34b819b806a84a7bf4aaba23e9337309f0f3aea33 SHA512 01962a043f6efd23e14570c486b43f89319c47d040fe94324b67e077cbc755435d236eb736e70c5fc582798c8765daa0f85a1f39a3d18ab27bff171fa7765e45 diff --git a/sci-biology/mcl/Manifest b/sci-biology/mcl/Manifest index adca26eb831f..4b33118a1c9a 100644 --- a/sci-biology/mcl/Manifest +++ b/sci-biology/mcl/Manifest @@ -1,10 +1,8 @@ -AUX mcl-14.137-qa-implicit-declarations.patch 786 SHA256 ee30112d296b8ebbfd1b7f9b831aaed715aead47cab1c8756e9a68e05462b6e2 SHA512 e1388441e06075e951a1ff9994a8e9fe1083042c09e072c68e9abb20dc4a83498eb4cb71aa71d738268a50a0e03ee8e7976df9bbb304b8c90314d682bb8625d3 WHIRLPOOL fd024ef468fd8557f6e931b147c4a280c679482d8d55b80325146a1b1347f2212a6c4d02a90a90c46bd892e7a4e716cae332827486ebf58ff4c4aa2be8ab492d +AUX mcl-14.137-qa-implicit-declarations.patch 786 BLAKE2B c7a5ed8f32dd3542766beaed19c9236a137444fdf69252becedfcc2d97136b0eba276355d2b24a38a06e0f78e6eaeb813bdc713cb01161167d4a2c65425e3c03 SHA512 e1388441e06075e951a1ff9994a8e9fe1083042c09e072c68e9abb20dc4a83498eb4cb71aa71d738268a50a0e03ee8e7976df9bbb304b8c90314d682bb8625d3 DIST mcl-08-312.tar.gz 2749006 SHA256 0061da0661e99f783d97e6ae10149fe5ce11fa332b24cc8a4a491a072867bb6e SHA512 9f89f81af398710ebb9135c93653d892fc9daef360d70f3b890a3133d8a17dddffe568b110d3370602cead895562bc0dc5a71020834b3b3e9b6d2abf4bf64b0b WHIRLPOOL 6d00665c545edb55605fb0438cc79a412150e68b9c63ffc51c93f8f8c33b9bcd6e4e5e435b3be89a64407a0a8f6f1b8e77567f653e45c08f1675dbf2b9e0b59e DIST mcl-12-135.tar.gz 2970824 SHA256 3f5e0e7ad1074c7c4ef0139aa3318f92971fede7292dc3571eca2fd1da20a283 SHA512 97234e88f3430f223e1f303577b2b8853f40de6b204de415466719f691f529a795b17bf2fd48d4cc73d05900c87a10ba9afabbe54bce9367ee59215e7db0a8f5 WHIRLPOOL 1505643a460ba5bd6b834d070278a108fba57c9dc2a90a72a8e0726bd54a1b8fe3e4792a63397d58db62b036d22c325db2dd76f696a8692473987395c556a279 DIST mcl-14-137.tar.gz 3035491 SHA256 b5786897a8a8ca119eb355a5630806a4da72ea84243dba85b19a86f14757b497 SHA512 7e399e571de60da5e1ba9e643b7f0cd98fe484cc8cef517222a57322b5c7a04afa675c7cf0ab88b5801efa9565e5e67a14c4914987964308391d88dd4be1bea2 WHIRLPOOL 6a4afda86cc91c3ddacb64740f020cec2235e22411430281cde9106fb8399663c7854eb1ba5f477624d825280a7762cf5a3f7c6ec824a784a7e200e92d42a168 -EBUILD mcl-08.312.ebuild 678 SHA256 4dba82220a12bd139e76a72622b3896c30db75ebf907a7ceb0f5b4a88a9bac6c SHA512 e628f2226efd505d191efdaac7a9f83e896d5b97455833aa7a6846fc7a8c8a1079fcc60fc343606252e839a3a2820dc6ab53ad84d57ae582f339b840bfbe9cc6 WHIRLPOOL 6780bc68f9f644f98faa82162b69032366f33c9f0ac3ecd8026aa411a2decda8e7620663e4535ca3328250eed4609cbf2cbfaa258db959a9d49799aa6f57dedc -EBUILD mcl-12.135.ebuild 678 SHA256 4dba82220a12bd139e76a72622b3896c30db75ebf907a7ceb0f5b4a88a9bac6c SHA512 e628f2226efd505d191efdaac7a9f83e896d5b97455833aa7a6846fc7a8c8a1079fcc60fc343606252e839a3a2820dc6ab53ad84d57ae582f339b840bfbe9cc6 WHIRLPOOL 6780bc68f9f644f98faa82162b69032366f33c9f0ac3ecd8026aa411a2decda8e7620663e4535ca3328250eed4609cbf2cbfaa258db959a9d49799aa6f57dedc -EBUILD mcl-14.137.ebuild 651 SHA256 6fe7f4adc04598fb1df491d4048a8a51d620799cdd047ad6f226b01d09fbf92f SHA512 042277297965d4796d0805dad2a951e8bd467630c7904fe1a5211616fc2a620c041ea6093bbaf10e6fed17037bccd7013afcfb0260e69c09bd1cdc3ca2f76f53 WHIRLPOOL effe1116b79cf9c2b8194bb69e048242860443a01d27889c151f6750e780ba116455fd598240feba62a7385897be7b7b879834dc0edd4c801320f8b8b5066f4c -MISC ChangeLog 2694 SHA256 b9b528bf475eb8d8d0f8cfce2efcd07e83b408ec8a3cf1b783755860412ff6c8 SHA512 a0256b62909e040eb9a9b01b379e49812ec776c353f5bb82ccda08a4aba5c6a7c98efd0e5144363c580f257ae58c3eb20fc4033d93b25fb5ccbd9cbd1496c184 WHIRLPOOL ec83d61d3a139b8ae37c02121fcfa08acd42503f299aa0a0ad4150989f98053ddf01f26cd23cfc31e646d1ddc3c7a449ea243233f984209d721ccdd381c77c9e -MISC ChangeLog-2015 910 SHA256 af9af086bd09e35b484f10cb43a649c4a398ae12ba7ee99de86786c312f182d9 SHA512 e615f431461784a2fef5c9ef7f445ef40bda238ed47f07a277acae33ec2e629b68d98cde0a9ea99cb3f32923ec71508fcc4047c36dea9e70f2fd81ac99301354 WHIRLPOOL 4f6659d92ee95f174e567038cf33bf7e5c99b36fb29b98f50275c3924b2f33d30ad76c5fd711a96eb3262bc2de0974c8690fbb487c50d6633039a7309599e4f5 -MISC metadata.xml 351 SHA256 fecfcf8c3f170513b7e1d3dd8f505846f2728a2f9d4eb14bdb4260788ca05f5f SHA512 cbd1dc5b22ba9761f793edffa5adc3a5c99fe99569301bbba219f04ba21c603e8a3c183d04ab6838ebab3777b2855a2d46a69908e683f5183a5a22872dd429dd WHIRLPOOL 1773bdfcb553cb970fc1cf94fde6526c72187e15a30aca6823954e355cac413c414b7f2746e16875635c30299b6f918e779de8b0b5084439ceab633323f56b61 +EBUILD mcl-08.312.ebuild 678 BLAKE2B 2d616c862e2b4e8af4cb9e5534db8813c986e2ca4d26e3002ae92e36bf0e672339b5406b1a4808c60f28ea21237c622c64db1b70c5f9876ccd12cbc53501b354 SHA512 e628f2226efd505d191efdaac7a9f83e896d5b97455833aa7a6846fc7a8c8a1079fcc60fc343606252e839a3a2820dc6ab53ad84d57ae582f339b840bfbe9cc6 +EBUILD mcl-12.135.ebuild 678 BLAKE2B 2d616c862e2b4e8af4cb9e5534db8813c986e2ca4d26e3002ae92e36bf0e672339b5406b1a4808c60f28ea21237c622c64db1b70c5f9876ccd12cbc53501b354 SHA512 e628f2226efd505d191efdaac7a9f83e896d5b97455833aa7a6846fc7a8c8a1079fcc60fc343606252e839a3a2820dc6ab53ad84d57ae582f339b840bfbe9cc6 +EBUILD mcl-14.137.ebuild 651 BLAKE2B 73ba9d5ac8159a10ced22a9a39e0d5c1c4943fe5cc4ad1e823592e6362ef1f9bd3f850173a6e2c91d43bcfb825d3fd4de91dad469b27e58bd2a43c036889415f SHA512 042277297965d4796d0805dad2a951e8bd467630c7904fe1a5211616fc2a620c041ea6093bbaf10e6fed17037bccd7013afcfb0260e69c09bd1cdc3ca2f76f53 +MISC metadata.xml 336 BLAKE2B 077cf6e56ca5ba6480b00411536b1814f73b8dc93faf9337e0e81f3c47f174172894487ef072637dd396f39a95cd3a6538c2fd3e62328c3659882629c9b96dff SHA512 41ed664e2fdc26c5984fb55d90365cb02fe0de893d74e74935d2a9f6eb17e2e56a33210ed7d03c28375fb27ebbae3dca472de79a2e387ecf769a604aea629da3 diff --git a/sci-biology/mcl/metadata.xml b/sci-biology/mcl/metadata.xml index a8e52b205b3a..25048faf1643 100644 --- a/sci-biology/mcl/metadata.xml +++ b/sci-biology/mcl/metadata.xml @@ -1,13 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <use> - <flag name="blast"> - add support for NCBI BLAST data - </flag> - </use> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <use> + <flag name="blast">Add support for NCBI BLAST data</flag> + </use> </pkgmetadata> diff --git a/sci-biology/meme/Manifest b/sci-biology/meme/Manifest index 81c0e1d7302c..d5e4ac672cc3 100644 --- a/sci-biology/meme/Manifest +++ b/sci-biology/meme/Manifest @@ -1,8 +1,6 @@ -AUX meme-4.11.2_p2-fix-build-system.patch 10447 SHA256 e8fabb881c4b2f24c7ebff9c245aafeb55a4d80db349df067d09d0143195f36e SHA512 85181e114e825081ef52545fef7ab638c91029964eb8be2e1e4042d1d766d5376dbcabc9bd3902f19d162997dd63cb02fea66d231df6bafc0e74981373ea9724 WHIRLPOOL ffa36e94450f9c6752b8e9b6c4b03f9a1ac2d4cabbf4a90bb138c4a0ab2dda4549023b3175c1a2375ac3cba3121681c88cd5ad9773111b49feda2972898a7677 -AUX meme-4.11.2_p2-patch1.patch 13820 SHA256 2cad7e80d00c5b493bcb60a56921e909e4168015d57daf87ac708d1404b59756 SHA512 5a5989b5c626dee6aeaa435ce6c444caed6711d62216743d97215abddef95eb92c66544576866fc43c8efb090410aaed425231642dfcd9634b3f3025d5f1981f WHIRLPOOL 739f4ce6b7b8d9a3649ec262aed66077f60f43629c4be0b8d3ce99d55656272e6dfa21490aee2159e203de113d16f6b48fa9458055215e326dfc0eedaf876f02 -AUX meme-4.11.2_p2-patch2.patch 1684 SHA256 b6bd7747e7995da169d40b9d0101c3a1d7658edbc98917f1f5b120202aab50ad SHA512 9c9b01196f76e3b02fa40c7a4d20bc77622cc3ac188584a53774be4ad72a889a72a7a57b38dda81fc7f1bb23db20eec50b0778b71caade4ddf65e49407f3ef8a WHIRLPOOL df198af71851937b3c3f1cd780e30a850f5a462ac94271898b176abcba64c20cedfc61080770f02b4f45b56ed00a604b0011576dc0e0f40330a28ca362b60f27 +AUX meme-4.11.2_p2-fix-build-system.patch 10447 BLAKE2B 5ca1f4b43247f00b09012f503e0198306db39aa9992e56865d130d40f1530452784bf9edb508ad37d15fe4427fa2d19d4781db35e1f2b1b0257e8214e92734a4 SHA512 85181e114e825081ef52545fef7ab638c91029964eb8be2e1e4042d1d766d5376dbcabc9bd3902f19d162997dd63cb02fea66d231df6bafc0e74981373ea9724 +AUX meme-4.11.2_p2-patch1.patch 13820 BLAKE2B 3d5815bfe966e1d77cdf4491f34f3b3bd8ea674a5510a63d3cec0d0710c29d6d8cb6b1c284f2c8e9259687975644d39afabaf7c3708a3023d3939be4bf3174c1 SHA512 5a5989b5c626dee6aeaa435ce6c444caed6711d62216743d97215abddef95eb92c66544576866fc43c8efb090410aaed425231642dfcd9634b3f3025d5f1981f +AUX meme-4.11.2_p2-patch2.patch 1684 BLAKE2B 7e5e22f90aa8424d26239a44e56c91ffe6709667a57bd73e058f1b9b012e3873ea6c226bfceefd4ab57989c3059f1fd2bf057bbc253620110fe26bb6370f6e7c SHA512 9c9b01196f76e3b02fa40c7a4d20bc77622cc3ac188584a53774be4ad72a889a72a7a57b38dda81fc7f1bb23db20eec50b0778b71caade4ddf65e49407f3ef8a DIST meme_4.11.2.tar.gz 18004930 SHA256 6e3ff843366588ea13fa8060306be9e2c144521912dfb268f03638003bcdd581 SHA512 c97c3815e71e2fb5491548152f00688cdfbf4365f6027657e0ffc68e5d96cdd10a4708e0882ab7a5a61d78d93113c925cf5bb300fbe93fa4b2961becef497894 WHIRLPOOL 6b77d7832342658d5cf546af0b005b59664c811d25a0412df765a15a8c80a75d9618a1f9966c9a2824750eced6605b534d41199382a6f2641e7430540ba19fcf -EBUILD meme-4.11.2_p2.ebuild 2352 SHA256 e020a0a81f04af2804748a61e76c1c583daf6aef5e57928277c649458877a734 SHA512 fa4bd73f96f5f0f05dbbd12d316abe49d0414978cbcdc25bb625c288feb346d979c955316298489d951430faf60354f380ead663d04e5e711789e67d6be52e63 WHIRLPOOL 9fcb3d03913bc7e01c7172a75654344e03732e83e97f2393fa6ead08041320a1de0f30028ab277e0343daa98a0afab02090aa2168280d02361790df76a965e03 -MISC ChangeLog 3250 SHA256 13e4a82e2ee60bbc8055c50a0c2b11cc0456f3690f2a3e82a18b30f5cb57de58 SHA512 558a4b08e4fa4902edbc58e26f0eeb881ebea51d1f9cf5a7b628fa2de0862aaf6fce20763eecc78c2af63d0df8d3a581656d3e74192d24b0c0b85cebb4bf877e WHIRLPOOL a4d7c84031c71acbe54826e959ebe8a05208432a5e43a5b91ee2ad84feab79bfda41aa727a454b7e7d51f32f3f587cf81816ab58cac955c2283988c54593d696 -MISC ChangeLog-2015 4217 SHA256 d5d809590c2ccd15473b9a412ccac930a684235ef3e0a9c576c89c30385f76b5 SHA512 982aff98dd881e7bff1572a2d6f6aee2264def86787bc1ecaad7b483f984eee0180ecc12788534b77d05e3ac178ac0aeda09821453b8bc009295864e9d817092 WHIRLPOOL 3354f92e6d3340ffaa81284a05c7e6252d0e56791fb261e1fd90ead9333ec6b71432d872926dd407487a405634b9101a9a17b103cc8ddec21dc49d32b56dff2e -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD meme-4.11.2_p2.ebuild 2352 BLAKE2B d5946ace6bebec5fe7714b6db3d13185b7fb1cd07e4f24d1a6c7474556c8ed6a16e95f3ae2a3ace62c5e75ad1e8cf5f2832b6dafc2a3276d47e7a1c43c329b5d SHA512 fa4bd73f96f5f0f05dbbd12d316abe49d0414978cbcdc25bb625c288feb346d979c955316298489d951430faf60354f380ead663d04e5e711789e67d6be52e63 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/mira/Manifest b/sci-biology/mira/Manifest index 3b001600d840..11dc11d39f30 100644 --- a/sci-biology/mira/Manifest +++ b/sci-biology/mira/Manifest @@ -1,9 +1,7 @@ -AUX mira-4.0.2-boost-1.50.patch 1444 SHA256 5790acf4a0a19f314285abb7bcf4b0ac38594346790eaee38cb20598ee083be4 SHA512 647efc785a76369524e264b611773d9f5101c13981c98a8bfa03d2633c74ff9e16253b48a506624cf75d1b11852ae8573d6446f584a951b8c5cdec1cd23552f5 WHIRLPOOL 8beeb1a1828ad721655290c4fffc09416073edf0ca13f2295b9a5b26c22380534a6d2713a8ce991388f7d64286149ccda331811b6049320b1dfa076c17415084 -AUX mira-4.0.2-cmath.patch 295 SHA256 44f98a0c58d670d30c69b8c6159fd019e1377da4a5fc8f0797b5891286713861 SHA512 7c45bf5dd987c06c76bbacc1bd6f1137f1c6ea23eecf01643ee335216341714a0607b4468d9241c4084bed6d32e453c8bb1cb48997164769aa33223fb59edd88 WHIRLPOOL 99a653497e8ca9da7ebe11d91d0bc6553f2609a1996607b642ed6a9415c71d1da0bf0194f271d2211a17841b07b2cdd88a9b690ae438c8d811d931f7988122f7 -AUX mira-4.0.2-cout.patch 735 SHA256 674daadda7a2e3b560237b1b4990d9184286be3ba7b03c3d080268b46bb0d096 SHA512 9d1aa493d20481d0a7e3eaefba36dc29d7903f70c9a445b6e0ea478d04124e8a81de37c437f0fb28c0a395562db7e78217cf09e500fd4a1f2a1f929c1d4d2a5a WHIRLPOOL 565380db81da08694536d141c5b74b3140f955f5aab98060d40b331bd8faa087d94378f6afc8777bad36466dca0ff7d44f2febe7d5e1bfa99a06a4e12f76b5ac +AUX mira-4.0.2-boost-1.50.patch 1444 BLAKE2B b85b61c1f84d907cba498d14b1ac01faf4e8918614ef673b937b4501611a4ba513d4c0db1d57f313eee98d98d64366c86eb78957d3c493efdd2c3b2cbd8f278b SHA512 647efc785a76369524e264b611773d9f5101c13981c98a8bfa03d2633c74ff9e16253b48a506624cf75d1b11852ae8573d6446f584a951b8c5cdec1cd23552f5 +AUX mira-4.0.2-cmath.patch 295 BLAKE2B 30892b3a519682db7e04b1a0169c4018d7f4dd4e3da631b2e84cd97f47183ee4ee31f6f68323be7893694afb2a7238c651db36fb51f143451b964de019b14e68 SHA512 7c45bf5dd987c06c76bbacc1bd6f1137f1c6ea23eecf01643ee335216341714a0607b4468d9241c4084bed6d32e453c8bb1cb48997164769aa33223fb59edd88 +AUX mira-4.0.2-cout.patch 735 BLAKE2B d386a704829b7f3264ee69d55d7451a5479a9d121e49cbd8d9322c9a27a065073076608569d169982784fcc6cc4ae4423712d15d1c4d642a6b8fd0dd7d5fe3a3 SHA512 9d1aa493d20481d0a7e3eaefba36dc29d7903f70c9a445b6e0ea478d04124e8a81de37c437f0fb28c0a395562db7e78217cf09e500fd4a1f2a1f929c1d4d2a5a DIST mira-4.0.2.tar.bz2 10368046 SHA256 a32cb2b21e0968a5536446287c895fe9e03d11d78957554e355c1080b7b92a80 SHA512 a7f9845de207cefb87ffa652f4f6b9b85735ef22eeb29b456e4d946ba1675e7dd2c78abb2da56f11fddcb699f5c0700a08ce298196ce1a8e586a758a8d3bdc7e WHIRLPOOL d038472f9b129e97883f59c471df51f07315ee38eda5a9e804cdd2d33988306162b1bb1dde2cb7fd510c82be5734240dfd69364d39865a47af439762c7154747 DIST mira_3rdparty_06-07-2012.tar.bz2 31656 SHA256 53cbbb9d57e2fa51706b3f1d055621c0863091542b8851f3ce8a45850951d7d2 SHA512 4d4dbdf7ab5126f9d47160bee8bc127b6a225de8087f6b9914c754324a74d966333207c86a3f38cf0ea9f91408707e2a24086dbe1318fdfa2870b0c39bc5033b WHIRLPOOL c9946ddc032d6864a33e7a60a4d1a515262ca2204535c7d81dcc73144b4f471f766007082d1912fc4ca219a9cbb4ac5a485451c625a7ffcc1949fb8574a3f3d2 -EBUILD mira-4.0.2.ebuild 2596 SHA256 2ad115b8c1108130d8d53227843603ff9a7f7908e09b595d1b9137d75ef83c60 SHA512 d39da2d62806f3d8efb5f998b363c7309d9e2254a3f084497e2fc7c86858804e55247b9deea1460b1c1dc017f7cf587174ee3c23ad62158d74c447de16bfae0a WHIRLPOOL 571773d44e31be5f974abccb989e95723f8fe4d0584aacb86d89712239dc87f27e55caed456be0526c538a2850d291e3626aa59d2e5bd1f96216d4319185a39a -MISC ChangeLog 3215 SHA256 932523a09fa5a0ca0cd8a91db43c773c14c12418e4c77944e495dfd3032b30dd SHA512 5c957aa95250c5a1acb53614f51f09cfa99e109b1a968064af088451edb46eb51cc56f80237770837cc60c2b182a1df01b08cd78fcc4b1a7afc8302b40a535df WHIRLPOOL c377dae8df89a237241880daa5fdbcc00d28d4b3a6fbae474ef2451326711fd338c650a642a7e38c811ffddba1cbcf0f9f52a23107cefdbaea5a7355e3f32673 -MISC ChangeLog-2015 4470 SHA256 40a66fa59c1d4434e70367580bf573a7bf29b9d01ab8cc5b3d5827ef171c3502 SHA512 ddd76e13a8cc27331d4352c7c3206fb96e29de7a4ff4fc47f4f7cd1f3cc2fd4b53947476d320397f87d4f5273754e78cdf300719575fdf3e04669e374d7e3c02 WHIRLPOOL 8298602a4f9da18ba845b60d24b787b2727adce4057db6b91c61dc783b9f0493540e17255f43a233f37ddedf74b96aec4c1119ac14d65ff6f12404879dbc034e -MISC metadata.xml 355 SHA256 516431894fbce903b3fe5539ea04820656e23c48dcd642e808a1af66ee8a23a6 SHA512 9d9037805b94622cb468553fa27c948de2849ac4c6dc1eafae8c3261554b5e97b631fe77e4e589eff613822d316b2843bcab0c47547b202651c8a804a516554e WHIRLPOOL ae8d0b1704c5d654d5669cfdea0ac0e7c14831c833ac00aa6d647f3ab523520d164dc42e8774ce7947a751f0b5da3f590f43826331bc9aafc914f49de913ce90 +EBUILD mira-4.0.2.ebuild 2596 BLAKE2B 688e9bd306f0d99f3c5a28a406cbce9d8434ada339450a2b5f786a4775b4d45f728debf393ff1a158f37d0dbeaf49151fa021fa9d848b1a05d426837e4696775 SHA512 d39da2d62806f3d8efb5f998b363c7309d9e2254a3f084497e2fc7c86858804e55247b9deea1460b1c1dc017f7cf587174ee3c23ad62158d74c447de16bfae0a +MISC metadata.xml 355 BLAKE2B 2557fbd5c3427ccced7fc6d233954a3e9d4297c0bec17158997f4f7fb490b525235ae27fff1ed19113b596de77a23518505e20531c7e40020e3f54932f5d9e6f SHA512 9d9037805b94622cb468553fa27c948de2849ac4c6dc1eafae8c3261554b5e97b631fe77e4e589eff613822d316b2843bcab0c47547b202651c8a804a516554e diff --git a/sci-biology/mosaik/Manifest b/sci-biology/mosaik/Manifest index adaa18c65bc6..fed3f33552ba 100644 --- a/sci-biology/mosaik/Manifest +++ b/sci-biology/mosaik/Manifest @@ -1,8 +1,6 @@ -AUX mosaik-2.2.30-Wformat-security.patch 3296 SHA256 3c69765e3c1d4602dd279b256990ccbcd1208a522a3bcef4754ab22f1ff1e777 SHA512 e72fa7cac8798425ac1dd4d3358bfdff640cc831a01531749ee2fad99f8b53bd64e8c7fcdddce205e9f6dd312cc74376afcba395ab8d508d92416190b7eed1df WHIRLPOOL df27b653648d71ade5c576923b5e7d54b48bd7ab414506e50ab6883b9e7b86d96f210d0e7311245cc52a7a58be38d46c0fbf58f074851bdf448900558a7aebf2 -AUX mosaik-2.2.30-fix-build-system.patch 8056 SHA256 88bd8b4419e5780ceae38cdb37dd07cf7d03e0c64e10490139e8f5f4d65daec3 SHA512 ed4a6efd9fb2fabd6c24adaa5894fde80024d8ee930450711c07388b62969a41e801f052ee88d7890355f1ddfc5ef9fbb40bfdabfbfae364c64c673ce08958c6 WHIRLPOOL 3abb198b14ef31663768a721f51245f072fde58bb2394ba2e4c260b9f8dbe8c22b0ad08aac3895b297d7ccedd7bc84b4c206181bc51821883175887d9debddb7 -AUX mosaik-2.2.30-remove-platform-code.patch 399 SHA256 3793acf75b1f369c799189f50169df3d0334e443b86164dd67175561fa74ebb2 SHA512 4aec709660b41fb61bb9219a587255a5f416992a4478c2a7eb67374d1425f0a4e0b4d356827a9214e2f2718b635169c95d3288bf10388a74e50d498c39c2f259 WHIRLPOOL 89c63cac8369cc576e972292a1fa1a9eabda528afe6e37ce942ec0b73d93df4ce3683d7fb774d944cef898a6e9de8a73a8d512cbbf55917a86d75a8d4c43945a +AUX mosaik-2.2.30-Wformat-security.patch 3296 BLAKE2B f75a4dde6fb88e0175989ff9ddfd6dfd2450eb0df24e4e5f60943fbd9fcc40b798d7d7bca2d57e25c4201f6a7cbf8eb66b2f3573f54fc05b5b3a46e3e01a1ddb SHA512 e72fa7cac8798425ac1dd4d3358bfdff640cc831a01531749ee2fad99f8b53bd64e8c7fcdddce205e9f6dd312cc74376afcba395ab8d508d92416190b7eed1df +AUX mosaik-2.2.30-fix-build-system.patch 8056 BLAKE2B 4c795e790718dca2a46e25fd67499612ad1226c6e6ad73d7543cd1c1aa1dacabc0ed77ade798b2602d8f661eeb9cd7b033bd8945d4384d01e2d279762f40fa14 SHA512 ed4a6efd9fb2fabd6c24adaa5894fde80024d8ee930450711c07388b62969a41e801f052ee88d7890355f1ddfc5ef9fbb40bfdabfbfae364c64c673ce08958c6 +AUX mosaik-2.2.30-remove-platform-code.patch 399 BLAKE2B ec711a9b112efa87b2811e4545bfc58716393576915f71167ff700ccd809be4fad5e07bac7a5cb7df911615f4c996284cd711c1d1cb62c5a18695e719e6574c6 SHA512 4aec709660b41fb61bb9219a587255a5f416992a4478c2a7eb67374d1425f0a4e0b4d356827a9214e2f2718b635169c95d3288bf10388a74e50d498c39c2f259 DIST mosaik-2.2.30.tar.gz 4387062 SHA256 685dcc4cde1b56d19be37bfb238ae4cddeb25dced6da7b3880e68973957e940e SHA512 1acf534e6defc927fc22937a7bae6786e85ab7aa234b4209169f1267f1a9bd68415b441c6aed2e7cd667f694a562017ebc9457251958f77386259ffce9812b10 WHIRLPOOL 493291cc94cc5f95f5f1f62c3208f1c8dbb8cb0efcf6a21cca3e3963228f02ab0e59f11e00d8a9724a99733ffd290bc979262c0e553a1ee55c1adc9c392c3813 -EBUILD mosaik-2.2.30.ebuild 1104 SHA256 ea37ecc77194c75ce01496b514aebc8e390fc7be4bfac5cc1909d51e873ade07 SHA512 34863af564b085b85d1670b9c20fdc8ca8c5367e210a041c81d2cb67e5380e91636620214ebe06c347cb0ac556581d304374e527738c36b01029cf38a4846a4b WHIRLPOOL 57644a9e561244ef72d917c5a92bf25a36702ba1b44fabdc028c47d8dad1340b4929977a81aef1df5e059a31c9db250f2d16e4b8a282f943d4f171037c57024a -MISC ChangeLog 3305 SHA256 b8b8b1113cbdaf2fea6ca9ab28f001062c1610f2cedc2c535060b48d73268692 SHA512 adf81c6674b28b48da41e77efe2863fc18206e3619ee5822fb4185054fb22344bdf7bcdb928377fb17a065ab65e0b6f5302027c20cbee03d020684a31a5eb175 WHIRLPOOL de1f72644cd4f32637610bf571787deeb07ec81008cbfc3fc54cdd46526802abb429c822d4688f81d6aabd317a8701255562894aef8957d11c987eeae95e80e4 -MISC ChangeLog-2015 856 SHA256 23a69346ec54793f927a44a2ae7e02651a39e3b9f7175a048421130459d89b27 SHA512 8f910c7484fb486a57de9cfd3905f7d7cbe99017ce4a8049380260b5f11b63af9b19f381cac56426af6e517218ba02f2fd58fe1cf4393a99d6ff668d8e07b192 WHIRLPOOL af9db8386579802fdc37c68388e481af380764e57eb956adbf56f9e2b933787aeee08553e1a20f0fa2a0561bdeb6702179482ce53d113fafb95b8262b153de04 -MISC metadata.xml 414 SHA256 d17a60490c8a08b7e38bac22293e7163570929ae004eb017436017bee8b33b8e SHA512 2e6887226a0ac7457d1bbce1d76ac0953f0c1d5ff1d4261b7e11e4fa38803f01f8a67a285c2071671d58fcb8912ca8bb66bdfca93e2481be043ec5f2f2353c5b WHIRLPOOL 8e7ed6c4688ae4dbcaebba57db220aec9be52b058488ea4ea86a77b032ece920385736713edcc0db77e0b49c8174c86c352033694099f24604ccc05fa082a9b4 +EBUILD mosaik-2.2.30.ebuild 1104 BLAKE2B a567a6ce6f232eff13980b0d1d9ad54f4ff486539c8bbb594412c4dd8798e59ca23df40af0acd93d17f552683b39adc6e0212e8c09ab308d186206c6dfa225f3 SHA512 34863af564b085b85d1670b9c20fdc8ca8c5367e210a041c81d2cb67e5380e91636620214ebe06c347cb0ac556581d304374e527738c36b01029cf38a4846a4b +MISC metadata.xml 414 BLAKE2B 3c19ab9f4c6a0f4e73d67fe4f280fd252d68120a28e045a39c3ad78a4741921b2141c4433c6babcdc33b16083d4949fc28448f57fcb6c65be8719dd1d0bff8f3 SHA512 2e6887226a0ac7457d1bbce1d76ac0953f0c1d5ff1d4261b7e11e4fa38803f01f8a67a285c2071671d58fcb8912ca8bb66bdfca93e2481be043ec5f2f2353c5b diff --git a/sci-biology/mothur/Manifest b/sci-biology/mothur/Manifest index c6d74e207412..2a6ed65976f2 100644 --- a/sci-biology/mothur/Manifest +++ b/sci-biology/mothur/Manifest @@ -1,7 +1,5 @@ -AUX mothur-1.27.0-makefile.patch 1196 SHA256 970d789187d58081bda269a863d965c1601ee18e09c39aa6dcaba2ef0aa89f5a SHA512 8a78ddbc926d4e116deed440fda8431ccbca3299ac182fc84850259187dc130cc43fb6f23845d055d998293fa43f94cbe35930242c5f6aa049f8275ad3e42adf WHIRLPOOL c0ae488479f430f212ff2158b74aa61ef9547b865be1db7ca3b546edf48907aa9aead69acfbc02c35b7d675209ac8f7d267a8f9a98ff167a0f73d0fc2efdd6ea -AUX mothur-1.27.0-overflows.patch 4894 SHA256 7b1f25400aa8f78ef55bcbd7d613eb877ce2774fc2e9492b6f9c544266661b5b SHA512 aa392b2060cecc38006a7ac50aaa8e4249a020029234ac2abdc33441b12a09faabb0335144ff4d888e55a1da1838a45347981f49f6658f3546a54a30b5e2133a WHIRLPOOL 7f0f8089b938c6a30ee13e217e21a4628ca56490aba36e7b6b14657ec70f3ba043243c80088be6b3e3d145835d4c3e3e3ee68d073f6556383a06e018f0cd716f +AUX mothur-1.27.0-makefile.patch 1196 BLAKE2B dbe053a5f5629eadae57bd09545ef46106741204050d0c888532388fe0b7f8f2fe4d5f311163e95812d0d828aae2228a2f72b7f0c861f5a3d42a41e17b6ba4f3 SHA512 8a78ddbc926d4e116deed440fda8431ccbca3299ac182fc84850259187dc130cc43fb6f23845d055d998293fa43f94cbe35930242c5f6aa049f8275ad3e42adf +AUX mothur-1.27.0-overflows.patch 4894 BLAKE2B a9de0276a9ccbb5e86d6cf208f86414ea8c0befdf80807e05b40bee0c6f685cb40a608005e69eb3f77b85990424a36cde14971044cb6a1136a50d85078eb9f1f SHA512 aa392b2060cecc38006a7ac50aaa8e4249a020029234ac2abdc33441b12a09faabb0335144ff4d888e55a1da1838a45347981f49f6658f3546a54a30b5e2133a DIST mothur-1.27.0.zip 7095054 SHA256 7521d0dfc849dc9ef707bf83032e471966914b9833247c49e5d30b8d9281a6c7 SHA512 81821ca95d4ce3f0d1e6aa920c4fe3fddd70f716157312ed0590c1c4ad728e6786bfe79f6badddcfb060ed5d1996cc1b5062c320a59209fef35f68e687ba3dd5 WHIRLPOOL 32e5c9c2be6e593b2dbc64be38c49b4dec3ea048cd3c972cf948136b394608a2dc168be58b7fb500a17fc6a152b7777fcd09b3f9fb3bf60c7dd92d043a4bf361 -EBUILD mothur-1.27.0-r1.ebuild 881 SHA256 f485ea8a591e1fe7f1f121dda9b0dd8c58d301e86f947f8fe5cf98eb07ee2b8b SHA512 6f2fcb2d296ef3ef33786b579106f14ee0dfe05a50b53f5e0225c477598da1171cbd88e84f0fc7df5a973c221319a2fa23fb5cbddb339e7ede4e54b34b223be2 WHIRLPOOL 3a0a4e95ca0a7cc73e035f975d369b07ca5a5f75beea46f195856ee66cd64ac066606c4212f6676ecaac5b25182e4ce3fb2c3e3db90175de446165acc2522bdd -MISC ChangeLog 2910 SHA256 d1271431f72a4b8d1d9fd37fdb2cafa07b05167a80f67859740b2b547e540307 SHA512 f52727a3fb8ac2b61d833e4484aa7b597c4e1ee521d816403a98d86a2256968034ef4034cd61f1221d5745d5ca5aca9a4b398d56848d262084be99473f8c1a7d WHIRLPOOL d35766e69fb50bba2451c957fbfc80bbb972a7a1b393b623c1adad29623992c5c37d29c620a2816d68f2d9b7f6aa5a465110eacec6043686f012877719825588 -MISC ChangeLog-2015 2717 SHA256 0951ac13aa91ee601c257ec73a3b8261d0ab456853edb2af7c88abb96a4c7c23 SHA512 1f1cc58996af9e116ccedaaf6609b3227208939d13b027ef70f0694edf906b759fac42d57a37a5537b1ce2b8fd67a40a5dfc37e0dd0158fa6301e91a48481163 WHIRLPOOL 955bd00c7dc0a234fde17e2e82b203fbff7182b8d0eb4abc933a67b0d9a3d281c59a5bcd0034a8c171cc565d683c3b5ab2625c5845c8fd5637a0174a50008e48 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD mothur-1.27.0-r1.ebuild 881 BLAKE2B 41d5d2bdb5dac6704982d6635febbbc565bec0bfba545bf70c85555f8bbf614cc91c4afb471c3cee49e59539906077b33cde0c7940818304bfbb3b7c1da1f3fc SHA512 6f2fcb2d296ef3ef33786b579106f14ee0dfe05a50b53f5e0225c477598da1171cbd88e84f0fc7df5a973c221319a2fa23fb5cbddb339e7ede4e54b34b223be2 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/mrbayes/Manifest b/sci-biology/mrbayes/Manifest index 4a7a73623659..f6d054350ffe 100644 --- a/sci-biology/mrbayes/Manifest +++ b/sci-biology/mrbayes/Manifest @@ -1,7 +1,5 @@ -AUX mb_readline_312.patch 1108 SHA256 6d7566cbe59eee9881b41a21ea561fd610816df768bb8fda42ef4435c84f5f22 SHA512 0a169b8560853dbff87c983bf8220384dcf22f53106ce5711bf3b1fc76d8a9adbf1860618176dde65a8657abe3ad888521bf5485fc00d4014adf1acb7ba3f114 WHIRLPOOL 925581e97278d36cdbfa4c53ab47a331640cf0d57c912eee7567d28805875a15e677a283f7a941c851783057cd606165ebccd6360e4f705eae53b2bf8df0fa89 +AUX mb_readline_312.patch 1108 BLAKE2B 4413b4193ee7c0c51a1ad7a422474f137682151f932b28fc6ee98390a228a4e5bbabcf30f3d78fc56a79a665ffc40bf05376fbbf14b68ff43bc10a9001ec8e6e SHA512 0a169b8560853dbff87c983bf8220384dcf22f53106ce5711bf3b1fc76d8a9adbf1860618176dde65a8657abe3ad888521bf5485fc00d4014adf1acb7ba3f114 DIST mrbayes-3.1.2.tar.gz 545968 SHA256 c60253de1980c9f0a0eb684fffe7ba428fda7c39a3edcb6acf384b5e1443f2f4 SHA512 2fb0ee7224cbb69c1acf2ffb0c6c8974f63002cda4f39a626eadf80fad9cfc23861f8c03f5545970f3a81e02093d62b6a0549ab7d7f7080557e91e21b2c3ee14 WHIRLPOOL 45c9750a1e3e3ac85a1085bcaf8fc5c108b730a3dfa2f9e8d81cea8720bd6f02815c3145c19ee6c369a43f4565c2b234ec81cd5721672abded17186264de2e3f -EBUILD mrbayes-3.1.2-r1.ebuild 1008 SHA256 4ed3c0c65258e1bdabac5a3a461660862faecd809a0d7d4fb7eea219c0b0eb6d SHA512 5fcbdd396c7b035ecc0b596a9866fdc3544cf8993fd60efa0a5ab41f7cd4271c437626e3c131d9d07759cecef3cb8700a0b5b761ec87cbcbf12b9d206543f918 WHIRLPOOL 65d442f033f1eea5e6ee4dc89f9514e6e9738996b8da169c850b31baa8a5b8a09aa133d29456768190e9a6d838a944056e962ae7c454e7fa021aee42e9a15404 -EBUILD mrbayes-3.1.2-r2.ebuild 1347 SHA256 ace0ceab6ce36430d74c70d4bae913053aa13978f51c0b148b8f391caa587dfa SHA512 c8655ecaf9933a963b072a242e44c156f89c635fae00fa135262911e2588beb623764a92634c27a16dcdac4fb70c16b88a428aa154a56ea816fd9b9ff2418037 WHIRLPOOL 57a34def5ab5c89fa72153b5e93b1d16cacafd0ad2404dfdf47aa2d3ba91627eea0cc9a0bfac83a17202494fdfbb26b05482fc036773b0222f9de5909e713140 -MISC ChangeLog 2658 SHA256 dcb2547bd0d07004b50e6e8a8ef179e3ce5e9c07b2f91c4783394d33d7f93112 SHA512 1be3d35c10b13c4f0fbd7f38a41678001133e58eef4436efbb6083002bd0a695f4823647bb4553142ddf182d83f60f49e0528614a5ff1fd929ba1fbc9feb12aa WHIRLPOOL 54940fc6251c4cebd53f07623a3dc0213de8c9d948b6922e1a2918e4615857037089e7a3605cb55dad7104a32d807bc56ba3acbd52005217c67ba3a280b5ada3 -MISC ChangeLog-2015 3659 SHA256 624f09b69c5d303e7dbcceae7cf41a0a0961a8affdea23e3a70ee4e5c10142af SHA512 68cb1b6c4177abf3ed1dd339edbff99c87bb70e16d637588f9d76ef798ca501a148a0a6b751c3fcc5df9b1b28305379a3b4e157973e6bbbce7bb10eb5c9dbdf3 WHIRLPOOL bd446c6d7ee8dba16098c97f203a52450ef924862838ffad53b75db387a8547c258f43dc65a81fc576699d5c99239736f7837e46518c5c7e8a656119111fd1b4 -MISC metadata.xml 916 SHA256 44be6660a7e4d632ae6a0bc88f8a4850beb6865e21634a75a0746a0e67849bb9 SHA512 ab6be2e4111088bc13e6da5f65d11437dc05dbcdeab83e5d3899b913ff9ad3dc1f22ec81f2fe73f60bf991d01f0a8691eaa124ba24bd7ebb17d995fdd271bfef WHIRLPOOL 208fdc5fc49d67b4124d4dfcf7ae678c5646f67734c543e7c922b3bde17568815caad894df954ce4f1b549118b552a60524a7871cd539b32b3cba95aac4b5db3 +EBUILD mrbayes-3.1.2-r1.ebuild 1008 BLAKE2B c0523ef79227c24b5ede39bd9e262710ea7f4a408b20bef20e8f0dca0950b12e7d5171b901743c5a6e1fcec9089ce90c4e8385e1a3192e0fb7ab21195122f631 SHA512 5fcbdd396c7b035ecc0b596a9866fdc3544cf8993fd60efa0a5ab41f7cd4271c437626e3c131d9d07759cecef3cb8700a0b5b761ec87cbcbf12b9d206543f918 +EBUILD mrbayes-3.1.2-r2.ebuild 1347 BLAKE2B 6587af6372eff67641954301a26fd6b9bcb9bb5b1ba04fb4217da6a6686e71c166409a514c348c93334a5a191bcfdb96afe915f1edd93e5985380c314dce853c SHA512 c8655ecaf9933a963b072a242e44c156f89c635fae00fa135262911e2588beb623764a92634c27a16dcdac4fb70c16b88a428aa154a56ea816fd9b9ff2418037 +MISC metadata.xml 916 BLAKE2B 511d932eff0de935a1c8634cc6398bfe6cceb7f2766534e5486f5ff2aa4c900b8d48d7dabc5cee2506061c36421f0ef336f43b5df5d23a03ab5911a1fef87b1b SHA512 ab6be2e4111088bc13e6da5f65d11437dc05dbcdeab83e5d3899b913ff9ad3dc1f22ec81f2fe73f60bf991d01f0a8691eaa124ba24bd7ebb17d995fdd271bfef diff --git a/sci-biology/mummer/Manifest b/sci-biology/mummer/Manifest index e1ee929f6519..120fa587c43a 100644 --- a/sci-biology/mummer/Manifest +++ b/sci-biology/mummer/Manifest @@ -1,8 +1,6 @@ -AUX mummer-3.23-fix-build-system.patch 10130 SHA256 4cb6a96d68713039b8edf796960bcd5adf00751869acbbe12b377f5cf1176b81 SHA512 4979c8ab1fde7a134e2feb5a758fbd1b9fe125e056e53f09ea620183d9b2492452cd8be473e474c8a88e4a25acbd7e20d401146c38cbedee564a03a601f92ca0 WHIRLPOOL 86d31520296191005c05b0f82a66ca05af91d5d7db75622faec6c26b717b603cd24f7fd171c1dda4619efee4b45006dafe7d41f488dcf63aa714fc7ce443c2e4 -AUX mummer-3.23-fix-c++-qa.patch 2615 SHA256 99acb89564439528b30f64448c193cd8302e58c7503b5d87074301bf2e712e42 SHA512 ca1a8156ecac367817f4678ed9fd0dd7e5f31cce0d8d167dd9245ea1e2ad4b4acad254277483f99764891a0cbad8ca6f879acc731b8e3e306e5644739c0f82d2 WHIRLPOOL a72fb08be411694fa5050628a1825050fe364243db8ee1d774e8ac3a7e02d0f8ad5937f607d314e4d84abf18481e2a25f52b8e2835385a077b48312bce792544 -AUX mummer-3.23-fix-shebangs.patch 2357 SHA256 1307243770f1af4aa508a00715d29b571b169807aa0102d8ec30af7becef335e SHA512 d0ac58170232244385328d3a23e6b8203593d32dda30d75915b4da8ad935fc1dc447b2a7c7d982b0a86c9fe4ca6f8c2031fe7f81af8a72bfba4d56ae6d246235 WHIRLPOOL 3c3fbbe2b99cda779283a9d9dc0b4b586c98dc1ba213be2c1007e9f170d80f72c4c253e599824aed2f8607c815f614619955f8b79d75778e9c34265f570f49c1 +AUX mummer-3.23-fix-build-system.patch 10130 BLAKE2B 1c11e08dcc21daf26b14e13dac86a26f4b881cf330b6b13c8295dd4cfc1af3ba035b8350addea603b714d5bbc4c96be703562c071de1d61ec1c6ed822b8e6e7c SHA512 4979c8ab1fde7a134e2feb5a758fbd1b9fe125e056e53f09ea620183d9b2492452cd8be473e474c8a88e4a25acbd7e20d401146c38cbedee564a03a601f92ca0 +AUX mummer-3.23-fix-c++-qa.patch 2615 BLAKE2B c4af27ae72445836a71ef6417f56b2feaf10483da70d38ff3cbda80d95db0947eb183ef3f34c3922397c759a7e424b1674b193495199c0f5b942af5c9efd77f8 SHA512 ca1a8156ecac367817f4678ed9fd0dd7e5f31cce0d8d167dd9245ea1e2ad4b4acad254277483f99764891a0cbad8ca6f879acc731b8e3e306e5644739c0f82d2 +AUX mummer-3.23-fix-shebangs.patch 2357 BLAKE2B 1a244047f55483240bc257892f2a607ab695624152613d665be5abecd85e02484a251e33f411fc67377dad3c49eb5ac32624acefa5cabeaadc8b5e3506dbb21c SHA512 d0ac58170232244385328d3a23e6b8203593d32dda30d75915b4da8ad935fc1dc447b2a7c7d982b0a86c9fe4ca6f8c2031fe7f81af8a72bfba4d56ae6d246235 DIST MUMmer3.23.tar.gz 3160143 SHA256 1efad4f7d8cee0d8eaebb320a2d63745bb3a160bb513a15ef7af46f330af662f SHA512 f31d36ef3e07fa4ac017c76c1c8d5f53882a59b061742d201f1f7aafb29d16af8268985285398dd90e98d276b2513d2c611f9876069b23fe82b5da1d3ebc04d3 WHIRLPOOL 7471d20a88f5ddf510d1e4826480706a683f005f3bab21ebb19b1fcba2c8f431435cce27a1cdf98ece8d4bb4dafcc349362037f6d526db3f564b7c013c67e882 -EBUILD mummer-3.23.ebuild 1133 SHA256 da065cb1a4314c709fb6fcac8a2079dcfb31664cd7b3430e19071e609ec9d6f8 SHA512 a25b94cb5e7a8261178d0a503c33812f106dde277c94a8525a0a8fcd6c120ec6b0d5cb80f26f0710245f89251ad4ac6e4fe86af42f31b31f37ab9eca6afc3b79 WHIRLPOOL 205e432b5a3c915913f15ebbe2ee2710e85a54ff1967ad26a4459a4f8c599fd828abea6813439c61d5d5e71884dd09603693e3d8facb3028b56b6b2cf753dd08 -MISC ChangeLog 2614 SHA256 c419c030871bff1d34b413648db36e3d476ecda28b88cb145925695b144661da SHA512 11b57a837714ea4725b07e0d3b5e09c621c40d7a362705a346d2562868d525eec054ae74147d07095f3e0c19cf865295ba1938743b2ddceae4371644ff029f8b WHIRLPOOL 4bbe42eaf6eed492df2ab6d192d8e7c29fe78cad9648c9cca9c1266f3267349cb5dee61b755d6a8ffb6b6278ba956ce342b4a82cfa10fb6b2aa8092d08ac75c1 -MISC ChangeLog-2015 2204 SHA256 6ba244dff6d066d6365eb4eb986cbc76f93015f16de562b2cabcb6e07805ac8e SHA512 b5c4554ef2cdc436db529a2122558857549683c7742e8a47cc8fcf01e1aa833036d4f6797fd5e8dc2339a44052a20e075b2aacb9e991757271c63dbf7d6bf392 WHIRLPOOL f33a5caa560957d50597daf1ff5bdccfd122378e24e5288bc0d3b592ea30e970332eb67df76377fb7c2186a64a2ab441b3127e8b0a67babd7dfff2cdf9f26802 -MISC metadata.xml 347 SHA256 090b02afe3d221595404585ab81794b7200d2debc18bbd87778a420e2c93bd9b SHA512 7465b510db1cbf2b5853452e947585e6526068aaa0562b7e3ad415838d97ecf30cf32967997c16bab17ac9c41921c0f92dc2a9647fde402f448d6f6dc1d2244c WHIRLPOOL e02461914ac5c1b2607dd7429486e9e0a0ccfbce3cc7e1543af724dd57a43660a974b6050a797123be01eefea593a8ed8277a983dece07708914e3c2829c7e96 +EBUILD mummer-3.23.ebuild 1133 BLAKE2B 9777159545c4cf807670d87fe2b4e2db2fd1fcfd9ac5139dc7cc3314cdeb17b03d505d4e7b3cf0995f082782d1ad1c488536df5e50d377b1c7dd3733e9af781e SHA512 a25b94cb5e7a8261178d0a503c33812f106dde277c94a8525a0a8fcd6c120ec6b0d5cb80f26f0710245f89251ad4ac6e4fe86af42f31b31f37ab9eca6afc3b79 +MISC metadata.xml 347 BLAKE2B e7c4951631c178a9a0b37ef46f4da256f8021c37603c532b6cc2f6257e42e25aa3fdc9ec2c3f0a8666a70966bd60c0c23eaacd1aa2e630247b8077462fa9d724 SHA512 7465b510db1cbf2b5853452e947585e6526068aaa0562b7e3ad415838d97ecf30cf32967997c16bab17ac9c41921c0f92dc2a9647fde402f448d6f6dc1d2244c diff --git a/sci-biology/muscle/Manifest b/sci-biology/muscle/Manifest index bde9de2c7a11..a665e0f6c91c 100644 --- a/sci-biology/muscle/Manifest +++ b/sci-biology/muscle/Manifest @@ -1,6 +1,4 @@ -AUX 3.8.31-make.patch 989 SHA256 f5352a5fc8a792d7af177d1e829a33e59bc39dedb81baf17c6424f8520ea6879 SHA512 e528b032d4e60d2ca22de1129da56125b8915ed288ee25965b2bc5b1d6118d1d589fa632dac9829011a405c3189b8b6b6c056eedde9dd30a9b6a6f572a5e2d2c WHIRLPOOL db552ae2482532c6034c86eb9be71eb99652e1d24e2031545eb5eff7ab558775ae0bcd0f467520df0a6b47ced18d8f163b7fbe83a1b6642118c86a53e8c7a298 +AUX 3.8.31-make.patch 989 BLAKE2B 1cbbee37b5c88a34705fd2adb78d4c5c1533a18f1896f3e4d909e17d15dbf5ccd5308137dd3a94f17ede40b637c9309e0694353e8f8e6c6c55cc966ebd4b52ef SHA512 e528b032d4e60d2ca22de1129da56125b8915ed288ee25965b2bc5b1d6118d1d589fa632dac9829011a405c3189b8b6b6c056eedde9dd30a9b6a6f572a5e2d2c DIST muscle3.8.31_src.tar.gz 515267 SHA256 43c5966a82133bd7da5921e8142f2f592c2b5f53d802f0527a2801783af809ad SHA512 2baf2aae354ae1e3f529e627be2ace86e89dd15567e1f642a625b63f08ebe3d4bd7315080c7d786d95e3eda8703545ec74af9fe83ad1523d55d00137fb7274ce WHIRLPOOL daea88aaeaaacf5a2da68484010091ae46c69713659f92f45e5e2096af9e7d8c645d14e5b6c4c8e73e4df35a086dee823fcab6d442cd3881b773fb0113ce897d -EBUILD muscle-3.8.31.ebuild 602 SHA256 3c6964a7120eaf9475c1f0fef930d1c6600f9bf11c008d2b48522b86a749a387 SHA512 4167a3402188bc2b17baa5419fae65e1a10c5884d8419de929434e3d44d985889a5131d34dae3854bc58e25450ccbc055d38839255a8153eb2e4d19ae3b84253 WHIRLPOOL cdc987d2a25f1a8ce40dcd1a83768d0be93f07a1714e4f0b838d93421e87b8365d1fdfdaab8f3140f7d6205e386db884ccb29897896fd4100d2d74b290b5bf01 -MISC ChangeLog 2490 SHA256 1475383b3dd7942a2228d52084ac201a41f8babd48ce1dc6da66e1bc9aafb850 SHA512 d0b774921811864d0e769c67df5464f126ea0c1d179993d7cdf35ec2f69e8dfe4e9e7d2567e6d0389ec740da1ae504107c0677f8d90791166c06cab06e341b1a WHIRLPOOL 49655b6305d974699ab9d268f649b52d209b7c8543c3877ded60f09771fb77d1037b17be062b875de91065294f80d61c98d6977d88bab8fc30040e7e496ebf65 -MISC ChangeLog-2015 2692 SHA256 fa708ddf75b2d3d4fb6b3167e43f157d99a5c9354d919baae3777fbeeee3c52f SHA512 76d9a7bb9b1ab7775c645be47dc5bb01a8482535b540d1983d5f8e15012514746892a67422ae56241e8ea40b521a28759c95c056df5c4b3a870af2e3d51cade9 WHIRLPOOL 86868989b062eac44e05a750955c207ca3577557b138934ab6842e98f34c4af84f9b97a569fe18b0a5cf61c8ebb62f8c10b5d3f4da5afe5a1fa9b836b2c9a0f5 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD muscle-3.8.31.ebuild 602 BLAKE2B fb70469bb54d0002cc73e364334355ffc3888248cf51ee59ec466cff5145380de0285601cdb20a91af068368fb2c3414d91bcb82a93dee9fb84d5b3bb6f565f1 SHA512 4167a3402188bc2b17baa5419fae65e1a10c5884d8419de929434e3d44d985889a5131d34dae3854bc58e25450ccbc055d38839255a8153eb2e4d19ae3b84253 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/ncbi-tools/Manifest b/sci-biology/ncbi-tools/Manifest index 09a566b3b44c..c36dc13c9951 100644 --- a/sci-biology/ncbi-tools/Manifest +++ b/sci-biology/ncbi-tools/Manifest @@ -1,12 +1,10 @@ -AUX 21ncbi-r1 232 SHA256 55d5d53c177200d4a9369102d3e2d8ef232f09dd8559aab6c6e4d2173e8bb411 SHA512 cddde027eb42ce34862c35ad0d809de3738301ea57aec2f84a447efa00eeedbeb528df29390041a1f947dd955d43cabac525316d343aafef001f1de21f5da2d9 WHIRLPOOL d70b9bc3a2b1cdec9c6d2def8b06c70dc0f847992a0720f036a7d2d1e0c90bd8a6a390c7f87c24edd2b0f6326a1d9e0fd0059db20ede0e791cc6ff0c46b8cc70 -AUX ncbi-tools-2.2.26-_DEFAULT_SOURCE.patch 2283 SHA256 fe41b8c4cf389f66471eb5711542b22f3bac2793038fb1d5b427052f30a27de8 SHA512 87cc2442e65d6d3a0fedd2501324834461cfcbbfa9adf83b0f070d5f4d77a1a30c8b9fd22a35263b705c2baefd0dfc11f53d27683b0357d2cd6f74cf379b7979 WHIRLPOOL ef45d0b80d27d1bbd0b76c4b63547a45e72b1bd0fa8cca61c0912f9352edf1a2cc1059395fdb7a9af909723b0209e36028d102ea4115bd1ea294c616e6ce7df8 -AUX ncbi-tools-2.2.26-bfr-overflow.patch 3712 SHA256 65418ea20b92561b1811bec0cd63d79c645afe86ce60f72b852c4860ff4ffe2f SHA512 f88ffb38ca70ffc200943ee9c44d0d3828eec2c681622c8a6eae90f0a59bf6de0e0f609b5a24b42803a39bf0b6d7d203a323a18cead749120e84affbe7405397 WHIRLPOOL a5cc4399a377a0436b30991ae21c9bb385763942ba8df169d70898fdbf206c1cfb910bd63d34f94d55ca2ef607e5abf0b1571a72ef94e44531492ef8cfdc8ea3 -AUX ncbi-tools-2.2.26-format-security.patch 6358 SHA256 7b8f59ffe69f87e07210b745c3438a058b9c6ff924b08418e3b6872fa8f59de3 SHA512 9a33c19913bae7c91bb888177acc89f608c8fd6616c258c73a39ba7c69fa9a3e40d66578a4cf61410300c3d5be851890f2b110c2e6e4580ab71546993b6afcc4 WHIRLPOOL ed07a77bd9ac358330773ef05285bd773e5953e9759bf9ec6d32d558e3d15f04652f7edd9305addcbdf84f1226e69189cf7c34fb82162fc7da19a13f3ea91ec7 -AUX ncbi-tools-extra_vib.patch 1393 SHA256 b7639937d59c8bd636c6b02a65a4469d188645b9a10fffd0c8680fb861a7a8e1 SHA512 faef4b98f7ec4ab842c8a0b99caaf47855f84c2c5f7b6a967bce05afc7d0cc69925a3867da2834778c980dd5b9f848d3ef969eb3be8ea0bac20e937127dcba00 WHIRLPOOL 190278df576d5169c2dddcd6e37b464165f058bcc715be675897635cc7d90fd65b14f73a6306e027482eb7f524541828e0d305247c357a87592c6a34675e1b1b -AUX ncbi-tools-lop.patch 701 SHA256 9e5c57e944d23920f196f36912933653c236998729f69f28be8b55964865dfbc SHA512 706dfb29f9b1eff1fcc7dc1df1d533563d9d12ead5b930930121ad92a3e8c159d1d7cf30acd9f4462772e8f27e6dcf45cd6125f2fa077b3902145f6faf1c8352 WHIRLPOOL 7d0a9ba13c6ede034ac71870f802ee75945e13944742ffd19086ce71127b97807ea1c87f97d6b3d7a96f5e7fb24b6110f03836a3f0967d1f23e68ca1de4e755a -AUX ncbirc 57 SHA256 6a9c895368ad801c9b04e08486771c7a96f3f26e81748d81d6c088b4aa97208b SHA512 0b9b68116b362ccc625623abf4e959abfb8555c31117216eefe3093fe2dd122c3ce508fe389c07a069d6f4322d889718e455de65dd3ab7d55a16d947ecb07cfd WHIRLPOOL ecd8c2c38b59801273a1392e02df3e6dbd5ed8331847823f69e878cbea74e2b4488ecce7aed4096d095d9912315b66d75d3dfdc1f6276651854dd6b5265ae795 +AUX 21ncbi-r1 232 BLAKE2B e56335a0cb2325e4874d097c85fde16c6c7362d0f5ce36bfdbb844c1c315122740ce77c69ae6fc787190039207fd81ebf7c8994141c70e19e5f65711019f84fa SHA512 cddde027eb42ce34862c35ad0d809de3738301ea57aec2f84a447efa00eeedbeb528df29390041a1f947dd955d43cabac525316d343aafef001f1de21f5da2d9 +AUX ncbi-tools-2.2.26-_DEFAULT_SOURCE.patch 2283 BLAKE2B f171abf1c2c55bed3bfaaf5018704914d0f57a002a252f0874e88397e0ae28eeab909edda7c6a6085dd3a65dda125604e4959fbf94d9eea782c16bd2bb8934af SHA512 87cc2442e65d6d3a0fedd2501324834461cfcbbfa9adf83b0f070d5f4d77a1a30c8b9fd22a35263b705c2baefd0dfc11f53d27683b0357d2cd6f74cf379b7979 +AUX ncbi-tools-2.2.26-bfr-overflow.patch 3712 BLAKE2B 30985ea911c4f139b9c94cfd4371f27179e8842cc03feaf4dafcf19b9e0c3c080716d4341d524d70631f8af63dcfac9f113119fa30cd934b8e8817ca9dbf1384 SHA512 f88ffb38ca70ffc200943ee9c44d0d3828eec2c681622c8a6eae90f0a59bf6de0e0f609b5a24b42803a39bf0b6d7d203a323a18cead749120e84affbe7405397 +AUX ncbi-tools-2.2.26-format-security.patch 6358 BLAKE2B 6b83568f9dd0aed216762212a4bdfbdb6979f2cfc9f2146a75f37bd427fd745d1d12b3b57188062b8b05af21b3119409a3a2c4b6f3cf646678a810cb4290d06f SHA512 9a33c19913bae7c91bb888177acc89f608c8fd6616c258c73a39ba7c69fa9a3e40d66578a4cf61410300c3d5be851890f2b110c2e6e4580ab71546993b6afcc4 +AUX ncbi-tools-extra_vib.patch 1393 BLAKE2B 3c9e0ffa614e7baccf87beea601561a8f6e1c760ccb1eb05e2158731ce2598ea28dc6b737598bc21a210df023ff86465ae7c9c1d019a60e82ca55e9489e74812 SHA512 faef4b98f7ec4ab842c8a0b99caaf47855f84c2c5f7b6a967bce05afc7d0cc69925a3867da2834778c980dd5b9f848d3ef969eb3be8ea0bac20e937127dcba00 +AUX ncbi-tools-lop.patch 701 BLAKE2B 9df2fd3ba86bc9a4f52d3c1809b4d795392666c601aa607d2377129c42562a99087387eaa69d9e9ae07545ea91808902db65718ccf3d671ca88f7255119b1028 SHA512 706dfb29f9b1eff1fcc7dc1df1d533563d9d12ead5b930930121ad92a3e8c159d1d7cf30acd9f4462772e8f27e6dcf45cd6125f2fa077b3902145f6faf1c8352 +AUX ncbirc 57 BLAKE2B 140c208cf1c7dbb6a204e58632c576e4edf0cd71d151b69f70839f1b06ae19db0d74d49179d2f0bc1320a40fabad49bed18a98a8bd2a75f6ecf068e647382c60 SHA512 0b9b68116b362ccc625623abf4e959abfb8555c31117216eefe3093fe2dd122c3ce508fe389c07a069d6f4322d889718e455de65dd3ab7d55a16d947ecb07cfd DIST ncbi-tools-2.2.26.tar.gz 68691452 SHA256 d8fffac25efc8ca894c707c840a4797a8a949ae6fd983d2f91c9972f788efb7d SHA512 da167216b56386b8c91a660e8ea0f3ac39b991d4519af9e02fc26aa16ed602eb3d9d874446f69a8f6840ae31a4d5a29da170e04e8a72b56f8c3ca038d1437014 WHIRLPOOL 6f390a4487b7ebf9d5ca31018f3b33602a695e4b0a4b090952fec9c7e8c3956edc197e75ffd32588f9431cc04b4262a2ca2e3b0ba50dd622ed73a4da6655a956 -EBUILD ncbi-tools-2.2.26-r2.ebuild 4648 SHA256 ece9d476fa7755d0095961d3233800c28a6b42af5f39db2f0fb0c87c627e9881 SHA512 c2a72119bb087fb210723fbc6ef88e397a2144b7256801ec382c251c1e5355481e0e17b8e6aa0c76e6ed45244c838a2ef9fa26761ffa40be114f241e115b6bde WHIRLPOOL 33e240a9b734d1cb6e82f857909471fd2e58b03d9e8a76515d5184226523d93b8755cac0c66d724dfe70d5186a9a081e8cf2970e3b338cfca138a182801385e8 -MISC ChangeLog 2728 SHA256 4fca9f111d89bb6ba9642023a01bb1d2cd1e5e6d2a3119d41cffc7f4ea446b15 SHA512 be30301617ebbcfe2654ce1994bf7d3c669e61c44a3b093a396269eed426bf4cffc6531ffa86121e15e59814905b3167827fe5d6510c83ec8c078ba1505d21fe WHIRLPOOL 6eb16aef0f2a9bef6158cc421b3b06f48a6876eb522461c3a7620c7a568cdbf9c1d38571b32874f845a584e51a41f981f8bea48916171320cf8606fe16db286c -MISC ChangeLog-2015 19371 SHA256 fe1ad6dc60461f18d0872d550cb87639fa2aa11ef45db9d9576190f2da9461e4 SHA512 a96ef681f1a530cd78c965d91b0779b66e99a1e31e3bab61416a34ec5acef2c0c18cb3caea0aaf16e644999339605fd14106b2d980d7eef5aecef046bc527ff6 WHIRLPOOL dcc15f67e468bb8d5e19fece87472613a5a1b96f7d9272cb11fca8eb1484564cac2eb12c44457e9e357e12628b81ec60427e80b0d906c8b629e0d2502365ecd3 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD ncbi-tools-2.2.26-r2.ebuild 4648 BLAKE2B a8b9407caac66f67f117696dccd630e7516f939300c9a5c70e9f7ef49e5b5598fc1363f74b7ba956b89397fb13ef19b4eb5258c649bab7db3f1a577fb76c4145 SHA512 c2a72119bb087fb210723fbc6ef88e397a2144b7256801ec382c251c1e5355481e0e17b8e6aa0c76e6ed45244c838a2ef9fa26761ffa40be114f241e115b6bde +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/newick-utils/Manifest b/sci-biology/newick-utils/Manifest index 9a4df45a3b5e..d3107efad007 100644 --- a/sci-biology/newick-utils/Manifest +++ b/sci-biology/newick-utils/Manifest @@ -1,5 +1,3 @@ DIST newick-utils-1.6.tar.gz 7518535 SHA256 2c142a2806f6e1598585c8be5afba6d448c572ad21c142e70d6fd61877fee798 SHA512 1e327f9a32b5b0df097bcb63f933f9073a85f0499a2a48be122f4affca52ae1541e1a6e0cca7420447aa8fe8d10d6e76e8d89933b2f84e023d6c87b50808d96c WHIRLPOOL 3d7477a9ffcd2b410d9acf476e2850944dbe361f5c26d7dc853a20d4ec76d70032ab03b5929afa252bda7c24e790243174be8ec35115ba8e78f63eaa332d82d1 -EBUILD newick-utils-1.6.ebuild 399 SHA256 18b1bd684ef09ac049e59ed592a7f88f719d2901bbc68497b728d87166b57e4d SHA512 f359ffd190bf1631108c84ea5230e629b7aa3aa8426d9f3e49b5df4c7d22a75e29bb74215144ab7dfa506dbbec704164c80c58b57c87305314e320c62d764c8d WHIRLPOOL c402cfb1d2ba10412d217bb49da868254a9f8c8055a888024a2bacc7f496ec8be62fa61c11cde4de695891b2471a73bb6cfcdf467418c1a1dc87e86d5e2f12de -MISC ChangeLog 2733 SHA256 cda2035859040337bb964d75ac38a1640791c117c6383061ecf06cde4d0f534b SHA512 175117e51b4fe16f3be312a296339817b6effd8a92cbb2722a9820c71bf7f4f3cf4de3996d79f56ec443321cf40ba4d837640227d55327e7ec962ea9437569db WHIRLPOOL 1ca0cb540f46b9d012522705d8f3b5f9a9026f6c8842eb73ee2f7f538f4c723d8723f57d37b9da874baaaca9d75a7881681eb1ade570bd1447e369f88b77b08c -MISC ChangeLog-2015 987 SHA256 3d747c7f4020369adc9ebc7cc195888ea2ef3b18d7867451363f2d6aff87d177 SHA512 eca65a57252c4f82822bbbc3ebd48a8788d02f6804ddbc92c4652bbde733ffdac8c139798d11be6ae704badf73b3fe1d4c1f720bd263a569d1cef1aee5998cf5 WHIRLPOOL 89be1a116346f1490cde2d8e1b0a1e7ccbab472306d496a1915ad5e1893810cdef3845e453637b3fa8988a6bb18f009cf0b0a7c54ec4bed2af89303811fb1598 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD newick-utils-1.6.ebuild 399 BLAKE2B d7e3abeeb7c9abd0677733ec78edfbca2d036766a733d7fb5c89bc12280f0a48c24a841e09b31185c100f750c36a55252f51c287287de5baa3b01a1cc14a54fa SHA512 f359ffd190bf1631108c84ea5230e629b7aa3aa8426d9f3e49b5df4c7d22a75e29bb74215144ab7dfa506dbbec704164c80c58b57c87305314e320c62d764c8d +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/njplot/Manifest b/sci-biology/njplot/Manifest index b90b24102bec..e56460a850fb 100644 --- a/sci-biology/njplot/Manifest +++ b/sci-biology/njplot/Manifest @@ -1,7 +1,5 @@ -AUX njplot-2.3-buildsystem.patch 1688 SHA256 2ebdf312755f1bb6915ff93959329fa20f92e2b00d681b104858d98e397f2cfb SHA512 af7f9c4e7e20f80e66e78eefb93dce0f99594987fc9ce04de0f447c03e2523b152bd5d32459ab075ca7a65da5d2fb4bb7624e7048f1d6a9ac7c3e1d4b28927b3 WHIRLPOOL 740210f26125ba444544a4394841e16e8e5c584b19ae047faedf7afcc24033caf44b615c7b21c77623efe380a6d34c42a9c46f46b25082a18acb425748478450 -AUX njplot-2.3-format-security.patch 366 SHA256 99bbf3411f8584b3cfbfbeac2c81c3b46ebda7de96279d7a1a0fc625bdec5732 SHA512 1a6a3d823eebca79da482c534f4c7e54e025900dd6f8407a9ae50e997c3585301762da1b0bdd2311f6b5698ba33d96a8fca6b8fada541323a97773146ef8e773 WHIRLPOOL a9736eb7047530d28073791924d79ef9ed65df051cc65b7e432fa9a8abd703131e2f5343266738b7727d43ffca1a918fd2341256aca5472e21a8e0a0e28be856 +AUX njplot-2.3-buildsystem.patch 1688 BLAKE2B 06d03338d02efc2b13985148f784472afbe27855fc3a0da9e8194dcf16337a320ccacc2de43a9daf6eb2eb4df172fbde4ea4777caa4f5edf58ddc9234a022386 SHA512 af7f9c4e7e20f80e66e78eefb93dce0f99594987fc9ce04de0f447c03e2523b152bd5d32459ab075ca7a65da5d2fb4bb7624e7048f1d6a9ac7c3e1d4b28927b3 +AUX njplot-2.3-format-security.patch 366 BLAKE2B 63160d8d6774d8dd802118cb8e40849545dc6b7522afd539cbe8861bc52309e70e06969a5a35786671c2ee3da77850923e0d4651582050699ec5c7159cbf16eb SHA512 1a6a3d823eebca79da482c534f4c7e54e025900dd6f8407a9ae50e997c3585301762da1b0bdd2311f6b5698ba33d96a8fca6b8fada541323a97773146ef8e773 DIST njplot-2.3.tar.gz 83641 SHA256 c62a8293511469ba1246c415e7f1974113d520c8a11b04c2ad4a886267c2de1f SHA512 51e7d48187f88c4afb36d55cf8de98dad3cd4cd541137262885fe84bedff9db83224cdfa3c6a14518cd8170a06139b798518afe9fbadd89162986ed788355059 WHIRLPOOL e3e9d9bd844b7d663c7724ea06027641a9948cda133baed8d311b2fb00a6ecf31553a259db67a84478ae04878716f91dd2a9f9df5e2b21254ec9e75958851eca -EBUILD njplot-2.3-r2.ebuild 847 SHA256 737901f1562015722d18b658ca43e5de166098a0c393516e38159433c5e9e41e SHA512 8a67dfe8db133776ea7bec00d376c0b25e4044916b1d67659b1a3a8a80c68ef7a90d91005e009acb48fa3f486c7611352639f00067d514cca93a32227a243eb4 WHIRLPOOL 5880a2828b98c1585907354a3fcd50f8298cca8bd557d5ff513cd3398271567c4b20227bad12fbf74498440ae30adaf8fd06bf630cb34fdf74618f73881c433d -MISC ChangeLog 2557 SHA256 e9561fdc8d0a5aec7df0672ed1faca36e91d11656ab7a7de8cfbc09600b42679 SHA512 e0ec62d00ab79b62802ca874215a4f78889b7f5706e135b7a27b04b034547fd001f88efbe3b986604de60848c500afa9723ebf6560b0755ee4ef48b350fe7bcc WHIRLPOOL 8f2297579749ee5079b0d6d7ddefc4af9ebdd871a564ec348fd536acd7cd11ff1cb6e0fbdd84dccde0da93e000ab61c9cc01dfd91ef9cfb7efff3d2600f2eb20 -MISC ChangeLog-2015 2256 SHA256 4958d1e7fa4caf5f2ad1ba69e7f8daf40ed151d58c0a6808956f09cb8a23c0bb SHA512 06c63bb851ce2f5bd3e6fd5aa58d0a46da8940eb81e99fd061cc9f8e3ee8093933d67b8f8c89264a54fa83d3531dcf2e18265b3894c09414f3eac8bb45884d23 WHIRLPOOL 2fd74b27c91b66c91cfa9455365a259e797470b747800d523c87de9192ab0c93794c5742e595d9258ca97f0d0f946f78ed0c67da63e641c54d2ddb3ae873500e -MISC metadata.xml 623 SHA256 a62d170844dfa49cc9e1b16e6316f6681be21207953d7b4a3332e35b6c69a4fe SHA512 494c11097c9484cfb104a8da218202294d13e71b2a8216342c7b9b7f00a97ac19403a3f21db91de08bc38e1bbed39693bd13167b70daad40267dca5fa30e2ff1 WHIRLPOOL 7e0336a4e039f1d4d373ea044e4c46b7d893939f063c12626500d986bfe2d2e975e5e8214b8558cf87bfec1036bfcaf4cec318bbc8b2a5003b081917e94c6874 +EBUILD njplot-2.3-r2.ebuild 847 BLAKE2B c681b44afb880e275afef70df7b6d14a36853c49872be1296c639e7c0ae1a358f3ebdd76294dce86392d5c75f01bee19c075c2533ff3b21c12f5e4769f032c26 SHA512 8a67dfe8db133776ea7bec00d376c0b25e4044916b1d67659b1a3a8a80c68ef7a90d91005e009acb48fa3f486c7611352639f00067d514cca93a32227a243eb4 +MISC metadata.xml 616 BLAKE2B 6b63329645cb512061e44565357fa2339303f98ebd34b6c7d39159dd61cb1997401500ec5c7db82e7c8a0792e0fbc46bd92fb350c5cc711f076e4dceb5ddd1a5 SHA512 828535cff695925a319a6180a904ec8ad35c387e684e4fafd8d86e9978fcba8dc151e8a3e191b6f8b6b75d29ed3352cc34e2adf325dc5a663b170724df48b771 diff --git a/sci-biology/njplot/metadata.xml b/sci-biology/njplot/metadata.xml index 4cdb5abfd7a5..2a3eb3140966 100644 --- a/sci-biology/njplot/metadata.xml +++ b/sci-biology/njplot/metadata.xml @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription> NJplot is a tree drawing program able to draw any phylogenetic tree expressed in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP package). NJplot is especially convenient for rooting the diff --git a/sci-biology/pals/Manifest b/sci-biology/pals/Manifest index d99fecd865d5..7b03b4b66822 100644 --- a/sci-biology/pals/Manifest +++ b/sci-biology/pals/Manifest @@ -1,6 +1,4 @@ -AUX pals-1.0-fix-build-system.patch 681 SHA256 5c76d6c96a86b41dd2233664e2c46b4f1b2dbd3eb568bc6f1f43d1d9f6341e0f SHA512 bd95517d72cf567a4608878d556919396c9dd1cd77a4e49f2f8604f058c76a1f26c31760ad6ef6048ec12b76de46a6f4c56b5cb27b4aa1f91339c8f14bd963ac WHIRLPOOL d4c573a048bff7128f83a8a9816bc357cd18822cd4207877bc0a45dcedc834518c6f7cfd7895f1dd5f8f5e909366df197778776721e2e09dd0c4cb46ccba2176 +AUX pals-1.0-fix-build-system.patch 681 BLAKE2B 8460ce718ce1a1a57970ecab525aa798e033c496a0108f44457155312653ce180ee700c76b1cf3a7b9f099a924cd7a8c0f027ba1cd65d96b688a67b97fe247a7 SHA512 bd95517d72cf567a4608878d556919396c9dd1cd77a4e49f2f8604f058c76a1f26c31760ad6ef6048ec12b76de46a6f4c56b5cb27b4aa1f91339c8f14bd963ac DIST pals-1.0.tar.gz 24895 SHA256 2768adfdd93f56f859744ff9bbbabcc4571b38fa8ea247d505599beee3a962c2 SHA512 655e3311c63709dab1f8a13b193ed30a5ee97c04757a1e8408a74f6110ff3bdd96ba9eb07f4987ed5b83790ffa8cec67f722fee783c4ab4120483a683ebb9b8f WHIRLPOOL 2cfc45858796a5a0a01287cd3b5a7235e90371e092dfe1a90b9c394e8334e16fb01766c6824ca606a86de48740a8036c695517d6797fd6682a7c8fd6bd6ebb02 -EBUILD pals-1.0-r1.ebuild 537 SHA256 cac9bef59956ece082e1736ad589ced57c78ae683b7a8341c6ee2da813bd95ec SHA512 666542e4faefb47a94ab6f7cc3be531f39e2ca3f68324a80bafbccc6c0de162d2a20dbda507709cfd2f207b61734aa21211a93bd597b02599d9648ca557d4b4e WHIRLPOOL 628aa8e53256b17a7e3c8572800198cc59ae6c88edb4dda4f4e103e8c8014ba568024826e9a3ee98e45b2febe4ee8cafd11c5888fb26fe434de70cd5a26f7d28 -MISC ChangeLog 2417 SHA256 74412c43e82063d034da51de2dc2ee4715aaafcee6f221e87adeb5d757f47739 SHA512 091097d1e4fce97c70ac60981a49cda99d6aa0c810f3deeace079a53863ee26444abf1ff665b3da0490bce22bf0fbaaf6f870b4720e29a9dd71c66e80949e666 WHIRLPOOL a1009bcb63ac422303e4262562e98de741c55a488afd078db8078b2c356f9907aaa6a938e63ddb5f4caa3309a7bd48d6cdd3c59d804616b63c52e2297e4516b2 -MISC ChangeLog-2015 833 SHA256 e01db609eed792eac309ba986e590a1761cb355d386f828bf3be89fa4bad361c SHA512 301f9a20d970b2842c26ad1d22774af0739acc39740767919751554a13bd7756fe002f461d12a78f0d38f3f701176a9e63289bc34435b3f1bf9596e21b648f5b WHIRLPOOL 859f587395944c4507c7c9dc72873337b2e5fc69b62be3cd4e7b086df545933992e31cdf85c33f0a92e304d02540579e3d5c39c8d28dd0afdf975d39802e772d -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD pals-1.0-r1.ebuild 537 BLAKE2B fd3a09ff6d4e619fd902a67504a5130656412ad9bc8201c549a5b98f8eb7711816b18b72414aeb89a4f24926db8d41457061b045aaa3bdba0cdac1bf3ce1e633 SHA512 666542e4faefb47a94ab6f7cc3be531f39e2ca3f68324a80bafbccc6c0de162d2a20dbda507709cfd2f207b61734aa21211a93bd597b02599d9648ca557d4b4e +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/paml/Manifest b/sci-biology/paml/Manifest index d91078ef56e8..57c19066af2a 100644 --- a/sci-biology/paml/Manifest +++ b/sci-biology/paml/Manifest @@ -1,5 +1,3 @@ DIST paml4.4c.tar.gz 2891715 SHA256 08aad25b6b06a359d4f2f12a60ea601c95694864d5f29f7028f67b80890974d6 SHA512 6a5f6d5baa91afa924ea392b76e59db6691fa9d6ee13a248dfe6e46d3fc83178ce41c2991de1c4cdb21952ee53771298aa0c62060f47d0dd84eaa76eb533498a WHIRLPOOL 44ae42dd6088039be1041cdce70ce9ee907b8f85d4e25f9d556df4738ea3ea91f700f96f627f20a13d226038132fd23aecbc5b452bfb6716b9499c8d2be491e4 -EBUILD paml-4.4c-r1.ebuild 983 SHA256 b26af56a27830d61800dcde4748c7bf8e22e7bdcc5bf64ca699fadc7bc202cfa SHA512 a7d590056e148c08607c6c15e872f6fc4ea87166336f19eeef497efb4852481b782b83f8e40b6f50005dffaa45b1fb6d028cd101fd54efa643e3678e60836b04 WHIRLPOOL 06bcfe96dc03e4e7a53973485fe857326543d3f0cfaddc69b82100d7afacd3cfa0d46cfbbf296fc34c03e160f8d332daed07fae8e9b4333620b4b04aed1f4568 -MISC ChangeLog 2425 SHA256 d403a8cfba0398d18886db184fe791caaeca0a0491f2d071f83786aa12fe8d05 SHA512 8906f03dc75d0a5b1e986df0a1f67d3a7eadcb7faeed673e20744d5df93d01f6703cae009e329cebc11798d3d8a4310174106dcd3928915ebaf36e76444de534 WHIRLPOOL 0f080599fbecf90cd407a61052c36b20679e633f967539fd6acde91b5fb803e5a9773d890bae96c3436d0d8f1ffdaa9c4c055d1606b7412212400a360b9da4c4 -MISC ChangeLog-2015 2630 SHA256 6c2d59aeba797855630a7d38aaae91f36b31d2b2a48e71a7798d89901a3bffe6 SHA512 baed8489c9c2684a208f9f42096a299d268048ea19a0c71e43bc4f17a9f8438f14ab702c31bb4c252bddd6452469fa7641ba6694a7899d22ab9ee2f02df8f8eb WHIRLPOOL 19701038e949a640bedf1caada118ec3272591c45f215c66c0c355fcc5445086f925a7e8e4060064a822ecdec75ad8c4d4765499aaaeda8b25670c9b801febf1 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD paml-4.4c-r1.ebuild 983 BLAKE2B 4c4da7c1bdfdb0f479b65b27c39463d3797384e69e11929e446e867a741a8d49102842aad00a3187abd119885fa23879f4c13128577d64de23b6011455271352 SHA512 a7d590056e148c08607c6c15e872f6fc4ea87166336f19eeef497efb4852481b782b83f8e40b6f50005dffaa45b1fb6d028cd101fd54efa643e3678e60836b04 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/phrap/Manifest b/sci-biology/phrap/Manifest index d09e0882b062..8c05c3f368bb 100644 --- a/sci-biology/phrap/Manifest +++ b/sci-biology/phrap/Manifest @@ -1,6 +1,4 @@ -AUX phrap-1.080812-fix-build-system.patch 3600 SHA256 ce995ffdad2e8d5d63e3a095e9c7616fdc94f6a7d4401c554f3359e673ac7f3c SHA512 536ad862b9b8ce0fbc7ab67bc48db597e7d4b8c66018a5abefe5a59f4fbc30a4a76c94f4c13f5af7d42a422a22f5181d8f015b797d37f175238c3d4170adf21c WHIRLPOOL 4a4dd715bc8c71705789997a3039c07f6148f17463c9afe0456c5a9d09de4483f12923897f89cf230819476344386a40d7e926ddaf4d432ffee2d9212c413c00 +AUX phrap-1.080812-fix-build-system.patch 3600 BLAKE2B 29a7846cd6394d17b35e525220b8ead461a22ab0f1301ae5668da36605649c07f23040c4c134424802d4da6e0c3b48fbbb05ec5708de50b33f024e4ba702ac49 SHA512 536ad862b9b8ce0fbc7ab67bc48db597e7d4b8c66018a5abefe5a59f4fbc30a4a76c94f4c13f5af7d42a422a22f5181d8f015b797d37f175238c3d4170adf21c DIST phrap-1.080812-distrib.tar.gz 317350 SHA256 7025f3cb30e5a3305a13d150f39a85580ade0bbf8169b25db65cbe396e201052 SHA512 6b125b9a99b6180eb5de16bccfe068abefdb59237fd3295924c418749f2f2d6e39cdbcecc6786e42738846975334c4d8a645eae8fd0fcbda6b0e99241deb15ca WHIRLPOOL e516561804620ba8c96ed0e5c5d791f3fe1e7984e08f646e6fd7c30042f2550f5d1c9b2f800e8a853e42b049b92418ed9d0121e77bf4e9aa895974bce5e73717 -EBUILD phrap-1.080812-r2.ebuild 950 SHA256 b98d56ca4718e86872195133dc4abcbc8308faad70cb958f87c08d0228907239 SHA512 4857f1fe337f24ee33618e3dac40a5edb7210d1353c058b57a1263a4ccdd8213270827c2c2f902d454226fc65368a1588d497dcdcf2eb9c15af406d1d5cac3fe WHIRLPOOL 45f46d85e8030d8e3b1ab805b97b25b731dde1956ec39c143e7507325294c43ddd780583ab7edd074bfd9161ce6c6a8e46ccc1abb726b69c85922645dd7ff613 -MISC ChangeLog 2829 SHA256 00f1db92cfbee3d80b26fe8193ef549bd70b5900d7819b9b9cdec54f76449170 SHA512 c98163ea771352ee0930a181ebbdb521a5c9057216afee402ea5edfb784c2ec316ce6c79076a8d1be2999d9d6a01355ebf5ce203322946b16035105b9fb05f6d WHIRLPOOL 94cda4fe5d3c0abd581484bf7ef7bf8292d5d727e2eaeb2d40fa8584f54273d5b34f60e7969ab7a6583bb931e18f981445c00a651796b431572e5691e81a1da2 -MISC ChangeLog-2015 948 SHA256 e18d1784109b55db14e7b9a4fb61e5d4b66813e114669c28420953cb014b6be5 SHA512 f23fd3cf92ef5071d962702da3bd3253b949a1982ea4a67d9ea09308c6bec3811753916b37a3853c02b199bcb56245549c8d84dc7bbb84eb2cf3dcd6ad158f6e WHIRLPOOL f44d52aa4612ccf877d37ad97102a4a8d565e406b68805e366e573f179beda0d2076268298d1905202c2958d23f69bcee8e5a018ad6874cb7308a858d9151176 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD phrap-1.080812-r2.ebuild 950 BLAKE2B bf8ecd534bd6f9dc99eb815e17196a23fbfd5a3caae7fc3ff024f188e73d061787f140350fd4bff042d5aa5663f52ea91e62b3e95eb56387eb225335181e6bb5 SHA512 4857f1fe337f24ee33618e3dac40a5edb7210d1353c058b57a1263a4ccdd8213270827c2c2f902d454226fc65368a1588d497dcdcf2eb9c15af406d1d5cac3fe +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/phred/Manifest b/sci-biology/phred/Manifest index d9d00191b287..dfd40b35f024 100644 --- a/sci-biology/phred/Manifest +++ b/sci-biology/phred/Manifest @@ -1,7 +1,5 @@ -AUX phred-071220-fix-build-system.patch 1981 SHA256 dcdce5aa8e23689a8d0b59f7ce0d2f336c894588e70b86a40ad2aa7de266cac0 SHA512 7647f6f6e9a1ae51cbf1aa3e39b337288e22fc26a95fdd88f92ce43fc6c0ef6ff59ec26919d14dfefff70be48e4a5604ddefef98bddf5d1d14d1e656665c878d WHIRLPOOL 7b6d72d7263d388e56c9cba872f193e0741fa1d8e55f03f53636ac2867a99b6d315bab84c70b062cca5a5fcb525878f307f336946f9fdc5dbffc9e51a24ce3ac -AUX phred-071220-fix-qa.patch 787 SHA256 696031eca7f55242ca002e37ca8a38f27e0f05c00572fb3cdad1636c72146ea1 SHA512 27811a834358d0e1bf8281882e0420e0eb6bd9586871c8c72a4de79badc9539ea8e9258b9c3a3bf8ca1d3f6924d61abce2dcc0c0ed3b64e5fa53d4548109f5bc WHIRLPOOL cc076f36d40d60fc2eab11d5ac0007661362afdaa35c1b9f5eefcf1e08a0862952d05f1aa5c9a752a747040aeab7057b6c97b34c6d7253c16bb032535bae6477 +AUX phred-071220-fix-build-system.patch 1981 BLAKE2B 0c9ae75ecf54eadd1d6cd3cfeed5d2f949f234b77d4f329133e2c176207410e93a35341c43636c5b2f742a2ee2d20825cf79bb65d5dac43ba28fc07f7c6bb69b SHA512 7647f6f6e9a1ae51cbf1aa3e39b337288e22fc26a95fdd88f92ce43fc6c0ef6ff59ec26919d14dfefff70be48e4a5604ddefef98bddf5d1d14d1e656665c878d +AUX phred-071220-fix-qa.patch 787 BLAKE2B 79f687dc1e51dd51e9f97886e0ada9b515d7e4255dff0ec3e81dccb2103ba8b4bee691c8a5b9a321cbdde5576fe8d80dbadafdb740c2cdee81fe9748255084ab SHA512 27811a834358d0e1bf8281882e0420e0eb6bd9586871c8c72a4de79badc9539ea8e9258b9c3a3bf8ca1d3f6924d61abce2dcc0c0ed3b64e5fa53d4548109f5bc DIST phred-dist-071220.b-acd.tar.gz 357767 SHA256 364b0b54c29717ba4c8acc48a128eaf25ba1d7f06acab7565975f6879764a975 SHA512 0a6b0a733e6dcc0495eaab720b75f8e5815df494d0a773b8b8336d5208321c2ba475921084835a769367ec51aed156585ab97346a510100d4337e3215ec75276 WHIRLPOOL 9b14cfb1ca970a14ef613ca17efb82955c0ecec414dfad8835c883650f306b3a79846b7a410a9359cbd9ca953d890673366b6f865a2a357e81213d34b3327d3e -EBUILD phred-071220-r1.ebuild 966 SHA256 51a4aee5de28daa085f086ef5aed2526aeede8c73be341a1a0f8c5640f0fbc92 SHA512 203ced3280f1c1bced57a1cb514533b71df1c2c9eefc94e594f61d45300da32617ff6023196d47cab7a1ca21bef61392760f5a12f25815ac5d78b9a8c58e7e91 WHIRLPOOL 73f20affc430537562a46d8f32cbe271e6c0c38854b33a1f689a9ba640583e4deee0753ef0986483fbb3a2845f46b020e30fc4fe3e67578d3b4be8c63ffdd30d -MISC ChangeLog 2691 SHA256 35005c4acf5310f01e34dc177f0791ef5053dbd9d8d3ee0bba147c409b1cd4b2 SHA512 d494e7bfeb3cc57ff9129c7c27f3296b156fad75a59d9a12ea7edfb8f26d14228e9e1cb1e7caf19dde1253d1581754e7030f61f79470ab0a9ae7fb9dd40160b6 WHIRLPOOL e5a408d79f41596f57e53baf344512a5b2670da36ac894f8fcc28898aa8806bc1d5a42b83c5956a47645b1c5286d6748d7f0e2bd718f3821ac902bfe36dca4fd -MISC ChangeLog-2015 716 SHA256 04a912e65a0223189d465ec11e8c64f177086b763b51f095826488cbafa5c654 SHA512 31af3a92ad7829c0e92b01c11a04acd3b6b626ea2479baafe807bb3fedc8b2bbfbcd6d16ace795c16df815a2d0ce09431d2b6fd7e7a71032db163ece4e0ae6d6 WHIRLPOOL b02865f737d32a4a74e7e73757bf6dabe464a17b080a18da8786da6bec12fd3b792b2b134da7a15400f4fc25b695b24e1d1ce65b6f0568ae70499ae77eda43b3 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD phred-071220-r1.ebuild 966 BLAKE2B 1d01310018b354843d7650a15f70b6ae5005f4ffa70fcbd270f88e02e9dea837e972c28d771a8926eb7c68faca87d475c2e79fc0332007214b37ce88d9817479 SHA512 203ced3280f1c1bced57a1cb514533b71df1c2c9eefc94e594f61d45300da32617ff6023196d47cab7a1ca21bef61392760f5a12f25815ac5d78b9a8c58e7e91 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/phylip/Manifest b/sci-biology/phylip/Manifest index 5010dafb9cf6..f925b3a42969 100644 --- a/sci-biology/phylip/Manifest +++ b/sci-biology/phylip/Manifest @@ -1,8 +1,6 @@ -AUX README.Gentoo 643 SHA256 d8a737f2ca6e0366fcebb96fbc9e12200b6402fea4c4f71696f4d9175980dfbd SHA512 63ec15ce2788171e5351977bae21e11a7c8609eeed4893849fabc909f0c6713033e253768ea3f485245456a9083ad4aa613e2503ebb4eb71f7b670f1af593f2a WHIRLPOOL 671a6aa44cae7054d402ac111a572145b705052e6d084687a188fe451c8c6f30fd276f8abb89d40bf150be8d119616f696ccaa59fb3ed9177040eae8b3f8b80e +AUX README.Gentoo 643 BLAKE2B 95193d4c9c8fc8fb5796bb0a8ca470f440ac66eb1da9b9ed4784494a6a4c9bb12a451223c0ff81ae3ba80da81f4d8d3a00a21cad557f575a81325a180a819c0e SHA512 63ec15ce2788171e5351977bae21e11a7c8609eeed4893849fabc909f0c6713033e253768ea3f485245456a9083ad4aa613e2503ebb4eb71f7b670f1af593f2a DIST phylip-3.69.tar.gz 1511935 SHA256 27947ce8dab4416e4823db38b3d1b0bf17bc545b6907cf09dcf6177df94c1a8f SHA512 e36d12bfe597896b4298c1d0e3b0b7bd783573dc03e861b9472d8284391b2339cb3fb58eb6580298724bbd516127b68925815455514f939da9272fcfed7e229d WHIRLPOOL 25c45ac2a96278eaef9a62aecc367aa32a894df0cd5aff9b626abd013ecbe52f9d4bdaf7805ba5c5d8699f9a74d3d26cfe6e1c1b22960c03061171625d16415f DIST phylip-3.696.tar.gz 3955721 SHA256 cd0a452ca51922142ad06d585e2ef98565536a227cbd2bd47a2243af72c84a06 SHA512 711a9a34be72b0f63c746733cd1384f091b7cc597dbd9a40c130e074efbf0a0ecc30e5a6b3452bb73dc69cddbdae2fc07d1c0a68f0be207471eab73ab876c6be WHIRLPOOL 7d4d4bd703ecd84b7570c937484c15f52643221ca178fb494f81b18991149fc2f8d1c8c5b99b57e20ada0bef7e93dcb15c55410f8f1012b1656419fab19b3cab -EBUILD phylip-3.69-r1.ebuild 1142 SHA256 3d6fa8738b4b032844d45d7bd66e127e22cca1f627f042c46765d706df9e5384 SHA512 b7d6638ddc1a035132507918dd49e82e41e450ca31b8e6afbf646e69ce29690b5be74795a108a03eaf79399bc909031d844f664e072861f4cc656aaa0b8946c7 WHIRLPOOL f0d6237fe45518ca5ec4400889ad1f381c964e4bf5792224c31a9c103f30102d082805dccd7ac95ee20341da94de48c300ac1133d2ff5dee5e1b47ba4bb0b1b0 -EBUILD phylip-3.696-r1.ebuild 1134 SHA256 48032ba78c33af8b36b53aafbf455e5419a556e0e38782fdee5a77887ac43704 SHA512 ef7196f540a1bf981dd1d2489fc2cba31fd0ea3135f060331f8f1ba43ce585ae4c6d33cc76f53d561c1c36059c631303caeaa20c28ada2c02ce218119a202872 WHIRLPOOL 56fb7f7895b25362b7ef60e17be8cca51c931e06de6f4b6f23073652e6ed71cfd87856d2ae3f6252011fa9c87765454a2495f44df32357cd5f4d875eb7f20f89 -MISC ChangeLog 2875 SHA256 795996871597ce5b9b96ecbd7e72fa271b2dceda9d172b42af4ef1583207dde8 SHA512 c62f9a8b3cc0d1a7b5f532c7fffeafa95019d868e9dbb789c53342e326259402aaa85f14fb3b50816e4453652a79cfd7eaa675895e032204383bc0d83f2300a4 WHIRLPOOL 5809f10fde8471e47635ba845f959bcd5544b30d047499ae8656b0108dd686585102552706372bf5b6b70b4b0e6d14899ee15860492766ea97366514b6d382dc -MISC ChangeLog-2015 7026 SHA256 733a3765122ab15458e701cbf902f9408672e47696b84f971182f968e70129bd SHA512 fa87c1d1959303b6d8e402812c1600cd5868724c93e4e8a6bee14f9ec320f8e967da5f443622c39e476b17b6bbe90006e52a0cfcaab8504a23267af74d79c897 WHIRLPOOL 1fb268aea348f615a17c2bee08c81592ff1ea20934cb5ab0b634adb5f490179efecdd67e446308a84f4e562067971dcc5db5935a755bea995969db65d1e81b50 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD phylip-3.69-r1.ebuild 1142 BLAKE2B 314baf63e3cf102ebe7d524fb1795ff9e1a85a4e5b0c2d54a11e7bb85d8cd0500a2e55c3c9ad46c74bdc0fbd0242afb2f7086ddb84891eb94918faf786e99d06 SHA512 b7d6638ddc1a035132507918dd49e82e41e450ca31b8e6afbf646e69ce29690b5be74795a108a03eaf79399bc909031d844f664e072861f4cc656aaa0b8946c7 +EBUILD phylip-3.696-r1.ebuild 1134 BLAKE2B 4c7dd5c2f3c4d3a6df4f0894c7c59b962d7289ff720887e97e51410722c43949dca349f7b6b49407975fa53e149a919f9009799a9f30d6fb5a2043b51fff7955 SHA512 ef7196f540a1bf981dd1d2489fc2cba31fd0ea3135f060331f8f1ba43ce585ae4c6d33cc76f53d561c1c36059c631303caeaa20c28ada2c02ce218119a202872 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/phyml/Manifest b/sci-biology/phyml/Manifest index ee94a3c2ecce..302636283d6f 100644 --- a/sci-biology/phyml/Manifest +++ b/sci-biology/phyml/Manifest @@ -1,6 +1,4 @@ -AUX phyml-2.4.5-fix-build-system.patch 1735 SHA256 0635b908cfb0b5cd58dfe7bffd22c6b5f24e8cca4f0ba077062831377649b0b5 SHA512 95079d00d4a7373f9b6f9b17b707ae999db38a341e03f96b5f1b023ea4fd76a4027f6a46c6e33ecf7902ab4dcbc22d199b5c0f75a7b0059c90f7c11fbc9146cf WHIRLPOOL 63bd683e9d57172a53a2bb65ecca0d781b249d73ae8db092c615524666d00b0cc89a9bec80f7678b1d9883c48d3b0a09c131303377da73cf454ae7c74eca6120 +AUX phyml-2.4.5-fix-build-system.patch 1735 BLAKE2B 2ba677db3b00cc1ede4701652cd854aa8f92bc545668fae50add726fc5ddcc0694dbac7189216816026433d5c25864c819c77a887a03f6a75f111084611b6689 SHA512 95079d00d4a7373f9b6f9b17b707ae999db38a341e03f96b5f1b023ea4fd76a4027f6a46c6e33ecf7902ab4dcbc22d199b5c0f75a7b0059c90f7c11fbc9146cf DIST phyml_v2.4.5.tar.gz 92143 SHA256 e8a1d3980137f8e528d0e59472aff37dbac615860a7d3ee4cdb64f30dfea296e SHA512 119716290eca0de4da05b0bacbec96139f4c89f6a033b861d1cb2655a620766bd0bea0675c4d7722a31d888652a28bf3544a643f39f11682982ede80dc5928c3 WHIRLPOOL e9c0e36ea871c61fc617ed0a10d306bdb66d84da0b9a08107fb9e1f6370e10676c5ad8a0a5e5404ccad6ae2f62551d566614a173cfdd4a0a523f727fc7924ce0 -EBUILD phyml-2.4.5-r3.ebuild 538 SHA256 22bf7f9b8b325d70ff7ee5e63207e2cb94a0fd0b0a2f723c623a7aad6753f090 SHA512 72a9907fa91529e696da775b9b99282c3df09e79d01a793601d949a593c05870ee0086c596fded675c1ef485f2d3a8d618447493ce90a786015a85a3848ec7e7 WHIRLPOOL 3ed65d9bce2c3313f1a08111388ac6c44c328cc9e66ca3237ced0ec07752af63584bba7181886b745a1b0c47c785b3bb859efdd457948f462bdad2aeca0b814f -MISC ChangeLog 2430 SHA256 d2024494a36343204465656b7b40db70cfcce68862a2ea52217fb2e0fafbee1a SHA512 1154e0a5002833a4be31df6686f0847daa4495af1175544d61928cbf6ce534ccafebbc33eb8946eb7721d1bd1298bf2458f50ac078d355492101f3fc499ea134 WHIRLPOOL fe22e48888de5c18570f7b1deabddfbd2d9949bab745808e294a2965332fce6b451e5b3229c895e3eb3dfcd5410b0af346da00ee363715b46cff42e54c8a972a -MISC ChangeLog-2015 1617 SHA256 ffa16cf31a589b692e8eeb21f9aebdb4ff68f52c50814178f65c6ebf1f9aab76 SHA512 b30f1127d8e02b6ba3e3860d604fcfc57cad9ef4f633faa20783bab48c54adbd4dbf5c472c43e5204b472574a3966d9aa579e3f0ee1880321ad8ea8c0a610630 WHIRLPOOL 93bfdd0d44b46ae9af184cbdd915c99000691e7395d1a280ec097d333cd11eb0c447b29a693dd42ea32d3c5959310ee8e9306889578f7925c92169ab640f8950 -MISC metadata.xml 574 SHA256 94713e777819ed96a655c5806190e2d62fd824bbd1c9242071505fc31476ba23 SHA512 0f25e0d422671c08446bd97be45b2f00e95cf793666ee6ece0652eeb8e27fd983896e3f865f4e5d7a04231355bbd6047dd19dac0ce3490ec78562305255c1a2b WHIRLPOOL 79885b18e00ff582d6746b0efef1b34901935edd9f4a753751ea846201264652b143418dad2a1a8d950cc52ab456a8fe272616ee2e8aa9c34b142ebc0859d48e +EBUILD phyml-2.4.5-r3.ebuild 538 BLAKE2B 430bcdab15a89b251245b5ceeb41f55a6cdc115c76cfb9ed5ec4e36eda0a83cdc98dee1b19c883f371235817d8e7bb213618065b2a377eeaf876c5715c06f54d SHA512 72a9907fa91529e696da775b9b99282c3df09e79d01a793601d949a593c05870ee0086c596fded675c1ef485f2d3a8d618447493ce90a786015a85a3848ec7e7 +MISC metadata.xml 563 BLAKE2B 891c35022d17a97024719e2efef139cd60c02923da274ba0f4a22f1cd0302f40cf51beeef4568758637a3114fab8640bc1f906a6dd505206e3b744df062839b0 SHA512 261bcfc822594f4d59215387d3878849543f6e989bf692f33bdda90aacc9bc03dd5933fd86e99534047b99440093f1f263af5f4b4940d3e05800ce90bb4e257b diff --git a/sci-biology/phyml/metadata.xml b/sci-biology/phyml/metadata.xml index 68536249891c..d4e4a77f868c 100644 --- a/sci-biology/phyml/metadata.xml +++ b/sci-biology/phyml/metadata.xml @@ -1,14 +1,14 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription lang="en"> - Phyml is a simple, fast, and accurate algorithm to estimate large - phylogenies by maximum likelihood. Given input sequence files, it - estimates phylogenies using maximum likelihood, and is capable of - processing large amounts of phylogenetic data. + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription lang="en"> + Phyml is a simple, fast, and accurate algorithm to estimate large + phylogenies by maximum likelihood. Given input sequence files, it + estimates phylogenies using maximum likelihood, and is capable of + processing large amounts of phylogenetic data. </longdescription> </pkgmetadata> diff --git a/sci-biology/picard/Manifest b/sci-biology/picard/Manifest index 1f11f5f1d299..b681066857ec 100644 --- a/sci-biology/picard/Manifest +++ b/sci-biology/picard/Manifest @@ -1,6 +1,4 @@ -AUX 1.103-gentoo.patch 5667 SHA256 83eea393354c3802cd367f42762bcbb53ac026c2d12188ca946295347950dd23 SHA512 966b0cc9ffc5bbf4b23c003538e01533344df496c38797ab84fcd2b382e91e003cc797a0c6ff5a878406b1fc169c1b044bce447b68770c665cec327762f08f6d WHIRLPOOL 6771393d7a39cdae83866918ce187d556ed697f41d55032eea85295f08cc660542136a9f9eaa23f9cec014743aa0099303c1cee206a0318951c8fd36f39e29af +AUX 1.103-gentoo.patch 5667 BLAKE2B 7d096dfb289a121a9e4cd27614dbf106fcbd17ea39666dd11508c7e58ec098c653c6bfb60ce69f173e3da25963c5d7335affb659566cf43d26f287d2898c37b2 SHA512 966b0cc9ffc5bbf4b23c003538e01533344df496c38797ab84fcd2b382e91e003cc797a0c6ff5a878406b1fc169c1b044bce447b68770c665cec327762f08f6d DIST picard-1.103.tar.bz2 15037887 SHA256 777af2a0aadd97a2b909160774e6e0ad99cef6de7763096f10660ccbe2baca63 SHA512 f8db38a8fee278868cd2ea11f78275a5defadf36e053703133f0f90836df8e3a3ca08635fd7c02967ed99b52bc5baffa600a34b58a94288d3eede7f5c3dd79ca WHIRLPOOL de5a0341473174bfc7a1f1b8d1b3b6122b212a1d964dda534912347595a3da9fe2a86692959df7375896292e3f3657a9c27c2f1694fca60d48ff23192b93b098 -EBUILD picard-1.103.ebuild 1513 SHA256 cb13c4568db1f87427ab63210509bf2923256cdfbfab7a127d7b124f780fa6c0 SHA512 e731bbabeed2d16707ad900a8a271143542c3c851c4becd240d79158b2f806bf5a4faf22b7c466427c406392faefc51628be621ec5b2d429a47a716d003a66c1 WHIRLPOOL 3c1175bae6571d1d0695ad5fe2a265ff9034edc4c06eaecda5ae8986fdb83b409a5b02d0636093ce0850b9c4be2da101fc680a07707669d4b81c58013cb7deea -MISC ChangeLog 3023 SHA256 93871a990cda8fe9e0be77197112a6c54ea4486323827310de73c45d143ba53d SHA512 fbaef8ada3de1410d342ab67696c2549f0857e3119c17b78bfebd2aa8ddc0ae4123e0cc1bdd2ef674fdbd36f7ee315b87167acd448a866a095372b36de09a6c5 WHIRLPOOL 1740f06e70516e2913156fba826e0b9f365aafe49e0f762d72ca4e1324a1bd610e64fbc94b55691e22581fff0cae3cb4a598069233bd7b81c3675829b68b9db5 -MISC ChangeLog-2015 1173 SHA256 14e93cee8c7bb9d7b6bcc68969e61f79158c4eb25a56afc0ac24f942c6930b0c SHA512 4f8018322128e732a2a3129a44b823791e52552e1e0d3b7b28a70aaf5e9158bc10e720d890d52618d312b21c1672fc6fd6a9dc823afbd433d8da5eb229624ab7 WHIRLPOOL 8f5d86e04162091935675249f12ccf929e8a863bec7725c5481dc1b1cd0fe9982879de98fee8aba1a9afafa671b8c501065a21acbfdddabc94d878e8b29e0510 -MISC metadata.xml 452 SHA256 970078b6008df7fe4039ac06797a81e24e146293bfbaebc6536498bb1ed70bdb SHA512 ed6d1d46bfddc918f869d55be92079c75fd720a19b681b444e6214c94753a917e3a1621b4e4f9dbdc1a8e737e118856fb60e2d7a5dbebd6dc57ffc0391bb6eaf WHIRLPOOL 718f4ed4e8eb810120973a7dbf3538edb59adccdbc2bef647d4273541d9a14d0d8a55c5b199dabe65218b5c26adaea36a1b23c651f4071afac7e883849d70613 +EBUILD picard-1.103.ebuild 1513 BLAKE2B 1755995201677c74108fbc0af289b46c1c518a620b87019adab0f90dd2fa6abc5a4d0135f2883f9716aadb96f60b76199fba109292ae4ff65b29dac82023e119 SHA512 e731bbabeed2d16707ad900a8a271143542c3c851c4becd240d79158b2f806bf5a4faf22b7c466427c406392faefc51628be621ec5b2d429a47a716d003a66c1 +MISC metadata.xml 452 BLAKE2B 0666cd14d39f192c1e1f48ef39bf276926211f0e6cf0c543807547bfbd8f460adf9792f0cd3fd1c061bd6fc319c68248bf5baff9b7183a12d613dbe62e2e3fb2 SHA512 ed6d1d46bfddc918f869d55be92079c75fd720a19b681b444e6214c94753a917e3a1621b4e4f9dbdc1a8e737e118856fb60e2d7a5dbebd6dc57ffc0391bb6eaf diff --git a/sci-biology/piler/Manifest b/sci-biology/piler/Manifest index fd1a64fd3886..f1ade1b66697 100644 --- a/sci-biology/piler/Manifest +++ b/sci-biology/piler/Manifest @@ -1,7 +1,5 @@ -AUX piler-1.0-fix-build-system.patch 685 SHA256 d17834ccd3cbd1293889e7e45d00c52f9e9c443f7503e402185d6ffffd01c05d SHA512 e8a618615ce62aa6b4d7e5d0a4ec3facd13b6baf2573323a2f9c03d81171f1c32686bd7b82c4576e0b38cc3b30b201750034ab160cdb9170215ff480eb72a3a2 WHIRLPOOL f8965dbba5a91c28d41d00ab9576e1c198d1cf7eb76172e3baa14f18c70797e50f1fda29f429d255f350098bdae6945759ef7498dfdcc2dfd1d5c261b4ed607d -AUX piler-1.0-glibc-2.10.patch 386 SHA256 46710d6d09df3eb0cd138f70df8cc522b4c7ea4cdd94ad5153800bdfb0019dfb SHA512 0773c9b6c2eb289c8dee3cc8db6ec0250cd8df3b9e5e729305b58b28db64f486571f2f54041c84d178bf984cedfb4d9941c5abd47f772ecdf29e9ec0bdb55fcc WHIRLPOOL 363f26c862cd13d44b68694ddf8fdc85ce7b846258432f59880b951c154e32b68d0e86078b67d6d9ec7b472adc66fd9a196df0e40f6293e2dcda018645880aa9 +AUX piler-1.0-fix-build-system.patch 685 BLAKE2B 8df7772012b8809599d0c80d52ec60884ee086f69b6b9f185cfd8b9026d4e047bd7cdd8e4eebea0e5fe991434ebc146cba92721fa9ab0238803c69e2d2ed06da SHA512 e8a618615ce62aa6b4d7e5d0a4ec3facd13b6baf2573323a2f9c03d81171f1c32686bd7b82c4576e0b38cc3b30b201750034ab160cdb9170215ff480eb72a3a2 +AUX piler-1.0-glibc-2.10.patch 386 BLAKE2B 758ba0e13cf114998a78866ae4ba3b11cc27aad09f17db84ed7b295c14ccbc15e8446b49bfc425f0ed92c694e16dfbee33ffe9cc0618bbb92c142d4d0c1628eb SHA512 0773c9b6c2eb289c8dee3cc8db6ec0250cd8df3b9e5e729305b58b28db64f486571f2f54041c84d178bf984cedfb4d9941c5abd47f772ecdf29e9ec0bdb55fcc DIST piler-1.0.tar.gz 35220 SHA256 2940530c0afd7e49ca6e9cd8a1e3fd9890d87c71f9c19a42b1e468add83ccc69 SHA512 35be1b445f1eaf26f96d0356a04d985fb528754677403df2061c0872107d31819c5fb355e7f616e953a997e67ce781846acaf3cc2a016097aca785b6a26de3d4 WHIRLPOOL 9533cbbf7f69d5022743bb4373bbd7fea65a8a7f4657b6eb2149bf861bd920b80c1a68599820007fcf302f3d651ee2eac1266d0130ecb49714835286afb3d5c3 -EBUILD piler-1.0-r1.ebuild 660 SHA256 1da2822f5328bcda50d4f3dfdb6e4dd0386bf4e762655e92cce498b5bd8ab294 SHA512 7a8b1c64559477101989e3a97eb8d0aa3b6e520df66b0f43a97f2531a2de7fa77acb6b9e6066ab0ac46668cd23bfa9357cebbeb5c610e67f3d757e53e5ce97cf WHIRLPOOL 43919a89e8872e4cc43366af233c3b79b44487aa55ac5452de7c113bc0452e5e8d5768fa766c37e61053ff14f4e991f93119d1336b4d72f2e1330a88e9483372 -MISC ChangeLog 2455 SHA256 46bba3bbc2788f8ed31047c946e5e9d2c92a5ac33862517da591c572a9a88c08 SHA512 bc83204e51c629c021a2172970a17cebb47db222d1fef1339f0119bde943d6a1b9eae425018cccde0f86b2c080ef119ecd670e518770a0b1911bac936cf9ac66 WHIRLPOOL 031a15918c4129fefb357a684363cfc91eb5fcdced21de34ff1744d3520caad8704731dd47461cf7fb24f6e963386750ccedca6b921cde24981f3c603810646a -MISC ChangeLog-2015 995 SHA256 4855125210fca3a29776cc9f9a5b2d9d594b41fd8ff4106ea9069b8aee995668 SHA512 6fd45ade79d1988b90c20bad113867808d78ca27382c75b509d69cbffa11cc776d70f4ca5c2aba2f2de2ffef0a892e37b3ca72d75f20e08eb218af499031a00e WHIRLPOOL 59abf16de447540babf5f7cfdf94241513ce402e0d3e7488ae567828d05d09560c7687b9fa2d44d432fe8d2f8d4562c8ecc51dcead5e824dc68b6bf5f25bd257 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD piler-1.0-r1.ebuild 660 BLAKE2B b05e0c65d483624d517ac6155087435cac128c088c14ed7df6091423c88353209acb96c258033bf43bf5983d51ab88aabec78dd9b955646a325a482ee7f28197 SHA512 7a8b1c64559477101989e3a97eb8d0aa3b6e520df66b0f43a97f2531a2de7fa77acb6b9e6066ab0ac46668cd23bfa9357cebbeb5c610e67f3d757e53e5ce97cf +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/pilercr/Manifest b/sci-biology/pilercr/Manifest index 62051e7c76c4..a992c26d82fb 100644 --- a/sci-biology/pilercr/Manifest +++ b/sci-biology/pilercr/Manifest @@ -1,7 +1,5 @@ -AUX pilercr-1.0-fix-build-system.patch 673 SHA256 4f33e868c973bbc6b787ed4618574e92562a927382908f123ecd7cde0fe546ef SHA512 b744c3fdc6e1ec152a27592ce8036de080c113b6385c5743dfca325ae8e0435d34418ca9f51830c540cf8efae710d842b89dd1b2b7b772379a4f527a72ff2c06 WHIRLPOOL a011e5302a3d46de49e2263273c50a367b7bebfec25305b11cf325963933d01e033d7e965787dd597e826bb4b94fbee1aed53e80572c4dce2734aad0bd7997d5 -AUX pilercr-1.0-gcc43.patch 854 SHA256 ee86cf9ad7ab5f18f9d06673c930d4c72f1e387c5b5fccc81044edbf613d7123 SHA512 7e83a1c29f2b6b11e101ffebf99516c9da06f7fa7645aa619a89c365dc89d6ea2659d4610eea25b6e260328b56320e6d720f3d0d67a01aae450104fc9513d58e WHIRLPOOL 721e2a8207631e96adb1b9a3c638b0306f2364fae763a68d6fc9b64bfc4971803ae7c15f300116a6146d9634ced1b5d73c82923ebdde7d30d010c37dc4f32daa +AUX pilercr-1.0-fix-build-system.patch 673 BLAKE2B 53bbafb9d1433e78edb3568db8e1a810ba1cd1b08f3f1b53719b1b98483825a50ef5daf06226a4ad72e577e50d3e034f6c2bad6b53fa098c89cb7635166c8223 SHA512 b744c3fdc6e1ec152a27592ce8036de080c113b6385c5743dfca325ae8e0435d34418ca9f51830c540cf8efae710d842b89dd1b2b7b772379a4f527a72ff2c06 +AUX pilercr-1.0-gcc43.patch 854 BLAKE2B 2e3ffba380df1522f28eab7e48103d6c56d1548db3eb8622e9e5f77c098d420858b1f9ba656593f949454b43f2cee5d7a79cd9d2fe712749cc481f4f1dad61d9 SHA512 7e83a1c29f2b6b11e101ffebf99516c9da06f7fa7645aa619a89c365dc89d6ea2659d4610eea25b6e260328b56320e6d720f3d0d67a01aae450104fc9513d58e DIST pilercr-1.0.tar.gz 1709144 SHA256 75f58d58567c478e271c4c554071a7d6d642e6daef8981ee2618daa7b53fa923 SHA512 c262ceef1d1af9e71f454809e940c2ad6d835a8404daa51ccef698b8348a504c697f5b5c268ec24df611f5adda2932e4982bcdabe4fbdf99d8c204f0f77f1be5 WHIRLPOOL 31639d51cb219efb62a70e05fe7be9d8e3c1980fdb11dfe6c32248f962881403a95553623de6f4a0f93897f6cc41e0344f355079a0ff2c386afa5e6d275f3304 -EBUILD pilercr-1.0-r1.ebuild 594 SHA256 4be488e3f5002392c3b0ee4c9cb0601b22a867054ed1155015cb43dbca8f6046 SHA512 5841ff12c7fa7d2290b2310aaba5fd0ec2688e5364e0f973314d9eeb6641fe43d0ff30374bc327f3d6152fd81476424f423841adac6d52656690d0a12090119c WHIRLPOOL 499287f2484a296ae3e993a9ab31cb8f7a4e08dce187144421d48746d33bdf950fc8e4c5f00b53fa644f5d33cab64d78c66643df2a821b6c1d71232568d5ff7f -MISC ChangeLog 2458 SHA256 ffa5ca6853f53b10817890f92a1b7fbc083638122e8c0c9f30f1b20fb0a0a126 SHA512 9cfeb9fd545d2b78de02c543d49198cf943285d8684dcdb6b6202718d43498bcd0e03255828a61af52148ef8c25a80245dfeba55c756c55dc1729d51b9b11639 WHIRLPOOL 53e05a378ba39e35a8506e7b048af29269676987d2382432a14d0f54181b120e6fff2e544bb230166d11267fa3f5d569d1dc7735ac0137f34e0b67e9b7b229f5 -MISC ChangeLog-2015 1130 SHA256 f497b5ef24802df4a8eac553ec05249f0c9cadb928192a13cf0945818eef4514 SHA512 5d7877a119a157a9fb36e772db9a4b105ee75e84865f223012519f4679a7e2261a9566a5d8ea73a0dcf1857b1281f3cbe0fb590589eac79c5d269801dc0e0c57 WHIRLPOOL fde7155161c441ba0d3a232ee87d6727d8b15236582a7ef4c5cfb9ad89fdaa8c82595c406e3b9a2bf49bdc7b95fbaa5b1ca713094bf29beb2baa5b6ffe7d544e -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD pilercr-1.0-r1.ebuild 594 BLAKE2B 591e2bdd45588279fc347ac5a31519b3e108bb29bc548b42a432e8f3c8fc73d09f195a5cfe66bac80ac825767a81a8e20814a9e867fbcad35e082383a107ef41 SHA512 5841ff12c7fa7d2290b2310aaba5fd0ec2688e5364e0f973314d9eeb6641fe43d0ff30374bc327f3d6152fd81476424f423841adac6d52656690d0a12090119c +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/plink/Manifest b/sci-biology/plink/Manifest index 5ac9f08542d4..82bcb32daec7 100644 --- a/sci-biology/plink/Manifest +++ b/sci-biology/plink/Manifest @@ -1,9 +1,7 @@ -AUX 1.07-flags.patch 1024 SHA256 f2427054a2ceecbe6bc4a1d435918a225e71313b454cef02b412d2be5eb3b12c SHA512 6511b08ea740819e2d17bfc2168951f94d8b9ad1165b3ee0966bed8f7a4fe7fb313b9b32994d0405f613c14656125db736757fc7f2a2dd726db4c90e9a13dd6a WHIRLPOOL 4781d59a6c5fe0ea03931a9271b30d5ff41f2a4527135730db00207996d17847cbe8b7f2a06bc628092c485524e5915689e71a0a848e602b355a8c36890f50d2 -AUX plink-1.07-gcc47.patch 1825 SHA256 f3019efb2ea2f979971777b29b449a85dc404ac06771c97adfbed61fbbbda8d9 SHA512 dba53ba4e50bd2352ad2ed604570525b77bc5698259b12f618284c999efb776485e94485a1ad90b8cc1744a0aa004435f77ceb467e1fb9e475065e084938f7fe WHIRLPOOL eb07308a1412753823a65e877a3f7ce3d3e67234d534fee896981347a8f1e37b6c01c9b66c0482f4c4488da89469911fc276bb1d89aa2fd6113bffd3925ce48b +AUX 1.07-flags.patch 1024 BLAKE2B 6b47f8782653d70eb86c4ebe7f06295f4b093fb17737b6ee9ab8f56fb02313049d5189ce0fa11d0ee8eb8d5c029f9d4432fb7aa0198282f56ba174bff2363b4f SHA512 6511b08ea740819e2d17bfc2168951f94d8b9ad1165b3ee0966bed8f7a4fe7fb313b9b32994d0405f613c14656125db736757fc7f2a2dd726db4c90e9a13dd6a +AUX plink-1.07-gcc47.patch 1825 BLAKE2B 696f30be55c9fc26204041d255eea3c44675e51c1ad021fcfda105d40c04e312ac27514b297ed42d2c30bc2978a7d6a3a1bd29e44b9c0b1b186c496b2a4a6386 SHA512 dba53ba4e50bd2352ad2ed604570525b77bc5698259b12f618284c999efb776485e94485a1ad90b8cc1744a0aa004435f77ceb467e1fb9e475065e084938f7fe DIST plink-1.07-src.zip 2257297 SHA256 4af56348443d0c6a1db64950a071b1fcb49cc74154875a7b43cccb4b6a7f482b SHA512 493f9f32ecd9eb20c5d11dc8ac98c47a9e695059cec3d1ad6f17465b71609577032368c0fee0d3d564e9451c3c07761e444717bec0f4628caefc587fceb1f6c3 WHIRLPOOL 01e69f605e1b52c6087dd75b506a7705d3bdb8e7dfdd0158e125f4fc4d962fad70c4ec430a139029b3b4ae91b822eb10123fab062c6552b946ec96ca7caf37da DIST plink-1.90_pre140514.zip 822157 SHA256 c6f93153d079b4b7f9ae4a51a3b4dcc7bc5ed60b408d39fce6234b98570b8ea7 SHA512 679f1e136b11f35f1d49636bc44ffd17e72e4e38edc5daa270cd963ca39f7b8a80f31905a94de517059e5b3ea7a6bf518ae34a5c2af8a05c530bd6df771606c4 WHIRLPOOL ebcccc1dc0461afd973aa63313237bfd5d904543785115fa71f3af1925d8bb21da15bd0baf60e38f4da534c8c554202a7af6c642b274ca9a458fc0035c2758d2 -EBUILD plink-1.07-r1.ebuild 1152 SHA256 bc00097a7b578ff3e941ce46755b7e62b0372535246858ec3ba8887baed6f7ef SHA512 eabbb86e94276de320007cc589407800ec29b1a850664c7d3ea74e2a3355a0528c28bf2c8cb416dbcba513e6dc2fe14df3cbfa0fe6678d1029815c62c1822f21 WHIRLPOOL 5152360b69e55e5c9d1d32486e3962ecf56c81aecf13412cc2c22eeb8b9bd96b627f4d5b74fe8cd8b2dfaa369fc97f2919c6006cbfaa54e467f73430624c22ec -EBUILD plink-1.90_pre140514.ebuild 1129 SHA256 e00e7bcf3f41dcc62bf2731f198c9c747546d8d77ebb7a3426f91bdfacc74f3c SHA512 152653b04caa40c548108bb9cade22c968475faef8fd4af2627462928a6b2b364a8831bba569d467ff4a435e6fe76ce5d9862cb19da9565db1e9b974305fd0e4 WHIRLPOOL f73af35e80d6269c7cae33a10a0707f46e4aa43a9cb4acd9c28ec02eb26f7e48a9be9b27c56dd32da4927d0245ecb693e2631d77690210096c58ea83586be9a7 -MISC ChangeLog 2552 SHA256 28a2d8ce7d952a34d2ed8f22e028af25711458c81f2fd449f2058459019c43de SHA512 fc18513555a36255f0e2f8cf30451232550f530c6ff3f706e575a22b7b2be770e924a533fee67d6f2b9f4e996fd5aa231ceb151f247b81c17d9dae6f641e539f WHIRLPOOL f3645112f085ef3fca70324a8c9d6d7973a2b4c62bb68ac6fd9eeb197b9ebb61cf1c8d1d0e83a493cfa5e0bd7770ffda89b20eff78fe10ad63623069c4ca33a8 -MISC ChangeLog-2015 1750 SHA256 b79a87d58ae9d9a8eeaa8bd9c5c6493fc00077f0529defefa109013a5acf1c12 SHA512 382a66511906608ee6ff0890aa8a485613046440f98e78e10646818ad3ace687e83d71687c3e626667c422a9416718657e41278ea1c5bee84d6fa0d46d11e33c WHIRLPOOL 13c54f79b657f444ac22d06b61ae269f8bba84e8f3305c85b0805bc40cef2fdeb4ddda9e0d69832a20bdff068b2109ec766d576fad06b4b23f8df37f550e804b -MISC metadata.xml 437 SHA256 9e93528414a2dcaba5f262138f36e5abe247d71c74a9b457fd21f0c931b72f19 SHA512 e4161118b7560456cca5ab5f14dfcf2cd3074e6be82dac3ce45b4ccd1d9d018c210d84ce29143c384618445e0a711ab47ed5450a25662dc762e871417c0f1dd4 WHIRLPOOL 05dfae13139466092240e9477113d76056dd05c2d4a82eb32a936e59652078e6d416c4962c214a088d7f4721c09baf631610d3d8eab5c8ae5bf2f3ab632fbc65 +EBUILD plink-1.07-r1.ebuild 1152 BLAKE2B 929aad0e5b3946e5b35f068b21c7549e22b7039dca8d053f8bd71d1fafa0171e093131a9b2591429184558438562ff8d1adaa4485e996b50f75f0e22ade7261a SHA512 eabbb86e94276de320007cc589407800ec29b1a850664c7d3ea74e2a3355a0528c28bf2c8cb416dbcba513e6dc2fe14df3cbfa0fe6678d1029815c62c1822f21 +EBUILD plink-1.90_pre140514.ebuild 1129 BLAKE2B ded7a69c8a040d4b4e2bcb2bb931adf6eeeccd6168d78dc7285322490f1744f7b4ae6c7e112e62a00ab0663227896cb3088c607a5a4a1d3903a080806618d6d7 SHA512 152653b04caa40c548108bb9cade22c968475faef8fd4af2627462928a6b2b364a8831bba569d467ff4a435e6fe76ce5d9862cb19da9565db1e9b974305fd0e4 +MISC metadata.xml 437 BLAKE2B a02d4418454b418b43b68ac394b2b08a196ca660d5b7cc5709e8750f6045f6a032700168bc5550557217f7af0f762ae7a4d24456ca3440e02674df6c604b161e SHA512 e4161118b7560456cca5ab5f14dfcf2cd3074e6be82dac3ce45b4ccd1d9d018c210d84ce29143c384618445e0a711ab47ed5450a25662dc762e871417c0f1dd4 diff --git a/sci-biology/poa/Manifest b/sci-biology/poa/Manifest index 6851a54f2a38..8c18ab8c9bfe 100644 --- a/sci-biology/poa/Manifest +++ b/sci-biology/poa/Manifest @@ -1,6 +1,4 @@ -AUX 2-respect-flags.patch 743 SHA256 12178e90b6ed7a70e6d436f0ad391e151b2b0a5b36d31133016acc6a6bbded6c SHA512 496415d501040057155ba2ba261564fc00dc764626c8d41081f5463b0b40f9eae978bb8a81db15cf90f193c4ca9fe8725a2876ed175e15d37a983196b70e192f WHIRLPOOL fdf2268b3c0811c8e07b018d9d23c504c4bbdec33da6884399e2c7b031dd16a4594cd07fce2f297fcdc2ce44f8082aa71890b3166c1fc3bc59424aaf0b44076c +AUX 2-respect-flags.patch 743 BLAKE2B f4da40ae90b7304520232cc9c2d61a3eecaac6ba1b9b886b29e473b1df8766286e3fd89874e2e836b9ddcd91f4bffe276ad74c1b6d073af3c1ca91e540f96c30 SHA512 496415d501040057155ba2ba261564fc00dc764626c8d41081f5463b0b40f9eae978bb8a81db15cf90f193c4ca9fe8725a2876ed175e15d37a983196b70e192f DIST poaV2.tar.gz 62612 SHA256 d98d8251af558f442d909a6527694825ef6f79881b7636cad4925792559092c2 SHA512 2a54b025f0a74ff4c01828f3e4b9e8e135bffe26d08f651f981bc95a64196173b5d887ef988a25c1f5fbf89333b4771622d5dc93946d66e7ec9abacb6167595c WHIRLPOOL 971baf2e60406f56b2d15b597f3471fd4efee8f76288df859cc1b81d8449424be3542d30f3b4c9a9f5d1f7eb05318967fba5413e17db510b25253fdd377fe741 -EBUILD poa-2-r1.ebuild 932 SHA256 89e485e8589f6ec88343c67657a47519db6b102756b8756cef580ff3bcd3146d SHA512 f371f3d321065905ea469b9473c40b000de43f62c3eac78e2ea9e5e3ec03d2dfa21083267be1159570ddecde325400d1c381a100831b5f56086e5465acf6e29a WHIRLPOOL 5106cf9aecfb3b7efa27241f3efc37baae2fb55727f8dced96b9eeab08b0ad4771c3ff4e530de39acf5b3e6e90db53a2c9764f372cdcda45096227f7543da1ee -MISC ChangeLog 2477 SHA256 cd3314f464a39912b70d833554dfe5146c0a31bc7ecd3381da00223593daa067 SHA512 06d2b3f422024d52e5a157cddf1550321c13129cfb5f93cbf1905cf08a173dc39a1d28592b0d077c410300be73b5b65157d8ae6e802efd2e86acb805808cf0e7 WHIRLPOOL 25e0916834cab77263889c5f583c4872d4135a0b7c72028d4a9f723a2b1d6363ee2d434dace74566e0f859dec871dc49fa454bb290de4bcbd87e91b8b3058114 -MISC ChangeLog-2015 817 SHA256 1de38231da7348f93a4ce0a70e3777668cf3b276ef48a6da76dca4a4a1458347 SHA512 29ac954a78cdece0447a24cac32fc1cd7dceb68e9bbb6c0eed1caa285cfda16152f78f985f7165ac36ef2a1b82e4b92b590fb9c4efec5d0cf20aac55782529c1 WHIRLPOOL 603f706ededbd456b069ca1bcb5a7582b9cf632fd2ab8e9fd30f78d5a76cce74ee93c27c77a3289ad5ded467823dc4fd07f4fa89bc53c8da338e8f250b5e3788 -MISC metadata.xml 347 SHA256 54cbfd5f930bb079143854733d16c6c5988226321dc34863dfce508279847275 SHA512 8610e747bbc86428757f77ed688520cdd9efeabc08e08f99ce74d98e7763f3f8cb7648b1eea01bc4db79ae16a650cb119b82022d1ac41e8fcbd6a6b40385e580 WHIRLPOOL fc0da5a6f4a5a4e1bc83c12cfb5c1616f839e9d71bb61daf2749b7d26ef0c576ce46073f11382602a0bce24f1ab31816b08961b75824f5175c8386b10fdf0776 +EBUILD poa-2-r1.ebuild 932 BLAKE2B 8579d1f62174aa1e59533a3a39db47616295686a920794ee65058f86e1694b3dc04dea9c389530dec72dc1ce813b955a94eb6aa2da8fcd43ef3c1fd7f88b3824 SHA512 f371f3d321065905ea469b9473c40b000de43f62c3eac78e2ea9e5e3ec03d2dfa21083267be1159570ddecde325400d1c381a100831b5f56086e5465acf6e29a +MISC metadata.xml 347 BLAKE2B f003b9e0541ffd38d84b2daf8b4df59bfbec1510ae162ac42af1cb1cb110f19297074d61b9b84d71441a0ceba9acbd38123db467e8500c482165fcd6c7e7b90b SHA512 8610e747bbc86428757f77ed688520cdd9efeabc08e08f99ce74d98e7763f3f8cb7648b1eea01bc4db79ae16a650cb119b82022d1ac41e8fcbd6a6b40385e580 diff --git a/sci-biology/prank/Manifest b/sci-biology/prank/Manifest index 3392278b624a..d657c6e887e6 100644 --- a/sci-biology/prank/Manifest +++ b/sci-biology/prank/Manifest @@ -1,6 +1,4 @@ -AUX prank-140603-fix-c++14.patch 395 SHA256 e755cfc8b57ecf91cb75f5aa670206f69d6a8597bda1bb181f77e157b6e61127 SHA512 a7ac7e9e8a138a2ce103302a92e936ab1c0b15c72ac8cdb2aae26c8767e764b42b048d40c436cfd21b372ae471706852ca23b41150578bb83ebbb13a7b7ac014 WHIRLPOOL a9230b1f702970c430d8cc6641b085698472237e72f51a9ad21571bde4c54839322d7b479410952dd134fe20a5c70166e0380d94ab650a87020d71ba037ecbe1 +AUX prank-140603-fix-c++14.patch 395 BLAKE2B 9b0242c22bbe87b39da73aaa3639c286601f96b06a75b8bacd7a305dbbf9dc0a5cc6b054ccb05984313ac14c7e9852d2dcbe36150ab4d224e48aa6e72b88bdad SHA512 a7ac7e9e8a138a2ce103302a92e936ab1c0b15c72ac8cdb2aae26c8767e764b42b048d40c436cfd21b372ae471706852ca23b41150578bb83ebbb13a7b7ac014 DIST prank.source.140603.tgz 150346 SHA256 9a48064132c01b6dba1eec90279172bf6c13d96b3f1b8dd18297b1a53d17dec6 SHA512 25e5f99a3822ff31436406f9ba1c781ba375959e1ed452c1e7416898d5246183510ec6d2bc715ff1495a779e42d7bd1d49ad1c332e1bd5982dad8c744ad999c7 WHIRLPOOL 5884563e6035b7e5a06b064035980e9fcee1cafcf559d86c8b9c8fc23628c7e9d1ba3e153a06f7322bb536120adcc6c8d169381f95d0a491b57836ada35a0de6 -EBUILD prank-140603.ebuild 739 SHA256 be4fbd1ac266dd6a21f792812b261a4dcff3e2371f0f6a5c7bd6de5ea60cc772 SHA512 81240472088098b2f2685e8a433a527d06a1efdb51edadc17380738700c1202097e5392ad06c13dfef2b554f08bb5a54b0b3008bd9329edb4f363e2688e62dd5 WHIRLPOOL 54d32b24c051122268373298cdee1491a96db8aa46fac6ab5f66e05a93d536b0cfe073f8546f4128eebb27c3f93113d4cefa0f53c9bfffca15aa3afbdf0119f8 -MISC ChangeLog 3119 SHA256 466c7fbdb55a4c3b9ec9d40556b1293f0920508a2638577f278e165749b359ff SHA512 3f3544bb2baa7df31c03c0e075de54abb8a686df562fbd21eb81f5a87ac25abffa3a30c9a91fda2c0b6452eb3cf6d2f1107d01f7834110de064408a42da7e1f2 WHIRLPOOL d8ff82d398b25fa8a69f4c902adb90345ba306294e7575061ae9289b888ce039676a32020ca18e67066c0bf7445c3a8b0bfa89da417f1472fc099ae78ec83952 -MISC ChangeLog-2015 1840 SHA256 d44f30b3a7725bd7b85e093058ec287dcecd0ef8896481efba6a9a15d96cb696 SHA512 87be0c60539ad6f91fd4bd1d29c3f8744ca8dfcb41b77766d2550d9649b475784f3c36690e66eca6ae2d1663e3fedc7637f3ab59f285f2322a0e2981b5322383 WHIRLPOOL a0df85ee894a20a4d3287cf4ac7b36d525e4be7548772a405d4e287be299c5747be9000c4a4eb6bde6432e791a9425b93a653df312f4a1308d0a37bdd7720540 -MISC metadata.xml 350 SHA256 9927e595cd299a311a10578d63c7d37080aa8c71403c7e94910e4c0522583533 SHA512 efa583ffdf5131a7d9c22eff1d294c2bf831e6dc71c4ffe3a8f1e072fb6230959ec95ea807e1672a0ac8026b49ac88ac178849a1c61dee0e6723edac28366a2e WHIRLPOOL 5d7046cffa2e4dcf25b599e7e0448274c176bd146fe5b50ff5651f7c12e9034bfe546189f5ca58206fee76f31e702429f2065435942f1220ee4b36dea3df4f2c +EBUILD prank-140603.ebuild 739 BLAKE2B d12e2aae28462ed6682d92ec36852e1ef137578119dcc4b2e0933f90b0dabb12c2ce35a55895049cb6aecdf4b4afad5b8446562c93db977b5197fff2daa1a16a SHA512 81240472088098b2f2685e8a433a527d06a1efdb51edadc17380738700c1202097e5392ad06c13dfef2b554f08bb5a54b0b3008bd9329edb4f363e2688e62dd5 +MISC metadata.xml 350 BLAKE2B 07e2ae0e47a165227aa3b180b153e57a446106628b48d86e0e03aa623463c62a7d35b6580e2f17ed8114e0bbb8384cebb459ca725f607d24050ef17e1effab9d SHA512 efa583ffdf5131a7d9c22eff1d294c2bf831e6dc71c4ffe3a8f1e072fb6230959ec95ea807e1672a0ac8026b49ac88ac178849a1c61dee0e6723edac28366a2e diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest index 756fda39e824..86694ed85024 100644 --- a/sci-biology/primer3/Manifest +++ b/sci-biology/primer3/Manifest @@ -1,10 +1,8 @@ -AUX primer3-2.3.4-buildsystem.patch 5460 SHA256 13fa4df0026faa97b574e3de3a99183e66ab18eec883db92e9f234acafe8b3b8 SHA512 52f539f52c92e5e21c3166da62813c6fa9f90fd9e0ca87d9ab67658496e13f4b5ce5c53770802cb1cdd21044244e21f09b0de2ce3c6d3db0182b3d9cbf64a037 WHIRLPOOL f09d952479f929d5e17abc3bb3a0313eae9d5811c3da14beb4d7111d17035f4077798b13f7b047ba7decd2b841c731373fb477f71a9b82f64906bbacf0118e2a +AUX primer3-2.3.4-buildsystem.patch 5460 BLAKE2B 1e7680501e9c4a74c599f52caa787751f74f6a4fd028d8273d00364c7d2e59c0a641d343386e6ff7598d7d0bbfa66ce80412d300646cd54d0112ce118ff8422d SHA512 52f539f52c92e5e21c3166da62813c6fa9f90fd9e0ca87d9ab67658496e13f4b5ce5c53770802cb1cdd21044244e21f09b0de2ce3c6d3db0182b3d9cbf64a037 DIST primer3-2.3.5.tar.gz 1655871 SHA256 e0c06a36dc384f656835a8d5ecb4b5069493b7dd98775b38a233863ab591c54b SHA512 e64c27eea0258af913304963254494d6c874e7776b09a14ee9a273f1a3cdfa908acf92b78affc0102f06df17effbf011181c60d97ebd0a645044df7a28b41fec WHIRLPOOL 321069f568fad409b31f2fd4caa36f1128523383f5b294dffc68d57a67489ee2ac17d53bedd8e36df9b688c43c06c91f47bdaf81b4fda6597d916ea06643e666 DIST primer3-2.3.7.tar.gz 1658090 SHA256 9e37a301d2ca9e5034c9a9d4afcb3e90041f6cc44c658b63598d0ccfcb176e5e SHA512 f227f80d395cb682a9d65e0ac3afdcacb8385d66e721b9163fda939a9c788a7c6907273f6223782702b48d7df66ea2331114f6303fcd29e3b3c50a2717da2fa7 WHIRLPOOL a092cb3a117f4d70178266ea9ae9205df567c8d18d4dbff3b5279860b22f9e4cce5484393771f37ce16a9f6e5ff4e5a51d66f9c0f35bf5cfce84a18225e3bfd8 DIST primer3-src-2.3.6.tar.gz 1667573 SHA256 2ff54faf957f0d7e4c79d9536fa1027b028bc5e4c6005f142df42ef85562ecd4 SHA512 671b420f3bc9b6b9972e19a757925ada170e5f8c0e3e8a90630a48e6cde44abc0e1e09b9ea90129f94b58f835e30440f3d91c14fb4b796fd94eb478b2ca28ead WHIRLPOOL 61bbc676c38b1b96806c9ac54d130aae936a5406213759613a3be76016cdd4ebf76c5a54d1ceffc7bd2634829d9aef9d64f87cc85289793b40ab031e01a5917f -EBUILD primer3-2.3.5.ebuild 1029 SHA256 660f5115d451de4a7cbbc2095c38edbd8c68fc9c66cfc28f59ccba595fa29be8 SHA512 a52d99dde78f30879e6d109d36d5d2d258494d5dda1548b78044731decd772ccf78c0203dc1844a4c08b96f26ac52671da4b11efdbb732a578c45cf31b68119a WHIRLPOOL 2f27877af3cea502ed71f563ffef7242a2d5161d5d7d92c825ec30ac88a67b9edd43510e954f97664232a74e66c3ff096a15d27fdd69a900fb7649ece8e0dcda -EBUILD primer3-2.3.6.ebuild 1040 SHA256 bdb0937adce3d209e93ecdb02a0b7e1dee9e284dc5433631a4e7f183204aeeda SHA512 f0471de087faa4e41123c94a1ef6dd32635edd5482d05724e135f8b05bcc073475206256e17f4547bbd269fbcc564f89dc0b4ff8aec33888c9095abcdc7c951d WHIRLPOOL b364572731f169ec2a1864e0443bdd67a078b5143aa538ca48555e73faa80cd2a976a1e255a89f80be13b4eac40abfa9d316143f840f9bd0bec843699ec458d9 -EBUILD primer3-2.3.7.ebuild 1072 SHA256 89fd122355086924fff8271ddffecd8db020389d54d75c00c6c146717a884181 SHA512 0ba2a4ff56a4ecc8abd17888acd22275f8330418d250503def828f83b047bf84d6a17224e65de75199923b40e95926128a885419b65325a09c061cdeba30f05f WHIRLPOOL 30f075c58925b63d050ce2562186187d12dad8fda68510c5132b5937a85fa9c619d3e600b7fdb803de9be02c7554aaf3568d4f9cdf8bf1e444469f898dc228ff -MISC ChangeLog 3451 SHA256 efd791c4864ab436b63e1e7c92147579ce770f6995784867b648fd7071b5c4df SHA512 c4379a8c99f503f520d17a89921e3f3943f87d2c336759a613de772fbc8670cef8bb120caec1f1180527f7ec0bb233cdd443177108e23831eeb016c37e11bb1d WHIRLPOOL 3b6f7a2e7ace70d4078a4df34225e2c424fda82dd8d0435961af8195325b845bbfac75e08b68f96dff64165d862fffb837d503bf080c85231f4ccba38e2a7082 -MISC ChangeLog-2015 6556 SHA256 7a6c4648e46858dc397f13486669207f9be2a1c6f90250e62421a9a4d9a48c44 SHA512 bb93c369c2b9403143e8c7e9a4776c93c6e54a9ee078e05c66793183f21c5497b72dd65578144fa716f4c1cd4c927f399aa9f1f593773a1fee4a37ffac2b541a WHIRLPOOL fef5c33af9feb026a5a9f8ebf0f2dae804b6fe8e0120d829e4434ccdc2b2b8a34f956b816dcbd3a1cd26daf98bcbefce6d92663a7b27e4391e3c02af702e8a7e -MISC metadata.xml 808 SHA256 6cab9fc709b096b8062c49f139e68cfa4b305f9ec9e0fed8f8d17681890230c1 SHA512 9474b015028dce21ce738cb6aeaefc2ee73b292fd24b9132da303acd2b7f723444543023a46b7c00b0544ebaa03b20569a3d46657f2bbc514a8d7d5444864dc8 WHIRLPOOL 2e6e55b643d47d4d2dc68c909254f16572f133cfb2f55e31361129de081fa798d0b956b9e4b9a045ade60bda234976ef3297e79f0f978c24b34e4bb2409c5448 +EBUILD primer3-2.3.5.ebuild 1029 BLAKE2B 5a0c27b029fffdfed3851928c65c6936c981eaf6b5b70322120427165eeb58078b13957b4288b4642b952854d3e8119d80914e1d36fa427bfb2a0b5a2d18f152 SHA512 a52d99dde78f30879e6d109d36d5d2d258494d5dda1548b78044731decd772ccf78c0203dc1844a4c08b96f26ac52671da4b11efdbb732a578c45cf31b68119a +EBUILD primer3-2.3.6.ebuild 1040 BLAKE2B 93acf2275975e9af3e27f328624ea3e5931da124fc009f95f604217de212cab23b96afa5191daf2d7a47eb329dcedb0bc5b154edb7a78df617c22d97213a81e7 SHA512 f0471de087faa4e41123c94a1ef6dd32635edd5482d05724e135f8b05bcc073475206256e17f4547bbd269fbcc564f89dc0b4ff8aec33888c9095abcdc7c951d +EBUILD primer3-2.3.7.ebuild 1072 BLAKE2B bc629de01b3d1fe7de243d8c16c6eecd89ba87074058cd0368e43ff4cffcb8b97f5b30e8e5d7386da84b93bd1e56f46f1c338b3d715e138b9d3c9294178e8da3 SHA512 0ba2a4ff56a4ecc8abd17888acd22275f8330418d250503def828f83b047bf84d6a17224e65de75199923b40e95926128a885419b65325a09c061cdeba30f05f +MISC metadata.xml 797 BLAKE2B 169e1065192fa4173181d9ee76a95ee83aefd398627ee65952eb14c3d3db93910c3d2239fe5ca7ce7c68f00e005bd7902a150640b85143f0f9d53fec41392318 SHA512 3d8707f6c780f3bec419c4cdf8564bf3634c4b75e4e7dffebdc29684dfbe89d9404c405e5c7b72e32fc493517e8fa36137c7a6f2b237f788fc6fb46ca43d2f7f diff --git a/sci-biology/primer3/metadata.xml b/sci-biology/primer3/metadata.xml index 664d9cf7d141..b80de21c3321 100644 --- a/sci-biology/primer3/metadata.xml +++ b/sci-biology/primer3/metadata.xml @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription> Primer3 picks primers for PCR reactions, considering: oligonucleotide melting temperature, size, GC content, and primer-dimer possibilities; PCR product size; positional constraints within the source sequence; @@ -13,7 +13,7 @@ user-specifiable as constraints, and some are specifiable as terms in an objective function that characterizes an optimal primer pair. </longdescription> - <upstream> - <remote-id type="sourceforge">primer3</remote-id> - </upstream> + <upstream> + <remote-id type="sourceforge">primer3</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-biology/prints/Manifest b/sci-biology/prints/Manifest index 37fd81a19634..dc3d4a03c810 100644 --- a/sci-biology/prints/Manifest +++ b/sci-biology/prints/Manifest @@ -1,5 +1,3 @@ DIST prints-39.0.tar.bz2 26277011 SHA256 671f870230424014d4b104b24adb13ad5a30f1d947d9565de4943f77dccb5187 SHA512 4ea48a2a0892739ac4e32a6309922b7b4ad01f9d2f847f7c42c7e6a00e8f56bab0771d272adcaed1f85516ea93245fb8c7864762c4699023a8d85d61c012bdc7 WHIRLPOOL 73303a8d5c92e3bc3d7bded006bd681e0ae0314ce3f605a040a9532e7ac5ecdddb8aa813f9deb9c4068bd89e13a9b3d0c97336dc7bc33acf1c19b75c9370ce22 -EBUILD prints-39.0-r1.ebuild 1044 SHA256 ba43cca5e90d21d98471da5d828dcb1a8f6cc142b57753a39135674697a43897 SHA512 056458b00dbcee0f8720e1a74512ab513836d3ec762cd0b764c4fe3c2a8f450b76af21bff93e75fd37d0b00317bac7087c24032683125b26bbf9699b62f9cf9d WHIRLPOOL 2eafe2555e2579f3c7b3d4df2545a3fddd58c4e41ac43174fc9146412573d31ef72802908b22182a988947f07baab9086da9c7c6c74e9e61cbcb1593a7a71743 -MISC ChangeLog 2425 SHA256 d90f8176a1f120ddb6b5ef217e77158928e0399948e78f7482b1670706302168 SHA512 ae273aa9d742b182cb813719d02b523261b825ca205fa0924d0c783a4b9a88db4e3d28b6223f8aecd1920feed993f0f2a892bc2b183525e40b691fdfbc24f48a WHIRLPOOL be0323995e663ce13217bdef2ed918d704a387b8e3e46a0e6200a2b96119f44fef12f1ac8448e267d2d526b144e9a7a6d99a85a4a14f9fee4aadb2ca4ba80fd3 -MISC ChangeLog-2015 3722 SHA256 32d1b64e95e19d112f9ec33111dac20dd4f6f7aaf6d08ca7866407534f27d286 SHA512 d8cc113e4ff21e5ef9dfb4ca133a918fc626c35c432cfa806a0360565235c9ec1584a41e454de5518556ec6d21be7ee5f2479e4edc965443b0a433effed2a736 WHIRLPOOL fef37869cdc2e481d9070e7dc3d7aa8039f49073517f4268ead4abf25e5042c471e964cd0396f7c293f33beff3f0e5a2de7e0434447193c67d69ff21cec52dcb -MISC metadata.xml 883 SHA256 7de53e2e1ad011a8ebb2e1a6fb20a5f493f546992d6e235b4dac0c888f2152cb SHA512 b90e950d75cdea30ce5a8e073a02b1d60d0a02512ab73979d23f6dccf591c8f74c5f98e3d62d49031b0a9b2dfbee213445a0efa890857061239379e9b3258c5f WHIRLPOOL 525bfcac5055f30d94d0624fc37cfae404839d6ea0a89a18b19c9c4fa3d2d9d54aa553810388af14d86da2a17b1a934efda98d1814ce988226c17e6250bb8037 +EBUILD prints-39.0-r1.ebuild 1044 BLAKE2B 607892ae4ae91c40570da9f3d8cf2f422f404a05b2bac7afbde751c011c88545092464e0661e80fd4f2852d4f0fccb9565483f6bd1cd3e828290c5595c7c14dd SHA512 056458b00dbcee0f8720e1a74512ab513836d3ec762cd0b764c4fe3c2a8f450b76af21bff93e75fd37d0b00317bac7087c24032683125b26bbf9699b62f9cf9d +MISC metadata.xml 883 BLAKE2B c5b856f6f033a4bdeec05454f4c4ce768f31b6594f240211cb845d7b6b09b10d8c23576d95d9f43a48c1b2e17708c45786673d9b6cacd63957b019d878c82550 SHA512 b90e950d75cdea30ce5a8e073a02b1d60d0a02512ab73979d23f6dccf591c8f74c5f98e3d62d49031b0a9b2dfbee213445a0efa890857061239379e9b3258c5f diff --git a/sci-biology/probcons/Manifest b/sci-biology/probcons/Manifest index c3e170942280..1ac50e170f47 100644 --- a/sci-biology/probcons/Manifest +++ b/sci-biology/probcons/Manifest @@ -1,8 +1,6 @@ -AUX gcc-4.3.patch 1300 SHA256 e9669d83770557834b54268f0b4e404981b91084587d69f6492c7160c1659d6b SHA512 a1839f844cd9ce0cd7a9542c0e4abaa859ed8f4f42de1dfae01af72ceb0326019379ba17ae56d4756bbb7d649da0b5deeb624cbcd5176de8a5ab34123fb689bd WHIRLPOOL 87c1ab62d7ead97f5dfe5ad01826eca1bd80887ff86efba50935419095156fff338350923ff21ec9673924a430760144e0ef364178daeb7e13340087a07eac40 -AUX probcons-1.12-cxxflags.patch 1957 SHA256 5342d2f86fc2d440db1649e0e1f4cf094d8e5a5861c145fb410d014bc9cd8a27 SHA512 033e92e414d3e2d1db867aec980d82759a662cf46692e3cc908bb7b3428d5eca105fb81cbdd8764c54dd3d759d29e713ef085fc48aac183426d26fe68a48a38e WHIRLPOOL 42c13cf76077bcaccf7eeea31f8defbbc82108b4314ba2cf494a8220d57dbf89a2cdb943fec36a21c46fcda7ad7c4abfc4eecfe8280ea2679d5b740c56150431 -AUX probcons-1.12-gcc-4.6.patch 306 SHA256 75bff1b697a732e183f1d4e20153b7b37afb4d3242f43305651c044809a02761 SHA512 f8a393cce2a860ea54aa18add7ba236aa43e21893925e4484b272190e29aa2dc27bf20b11edc5694446f027c6d8d6ff3c3f92383f0b0c8958b1b1d5b7564f828 WHIRLPOOL 5bc8ae7d4d35e6989fe2606b86ea236e3baaf72ecba15bd4ec15d10bad09eef47c3a7cb508329a38607c403d75906183f8381f0cda11b4b835067434694146b4 +AUX gcc-4.3.patch 1300 BLAKE2B fd74d2cb3311ef89cb012276a55025e4430b452cd603d23866b0ef6ddcf9ef34015c26497190b09e70dda02240dcd1862562afae0608450f4799479719c36bb3 SHA512 a1839f844cd9ce0cd7a9542c0e4abaa859ed8f4f42de1dfae01af72ceb0326019379ba17ae56d4756bbb7d649da0b5deeb624cbcd5176de8a5ab34123fb689bd +AUX probcons-1.12-cxxflags.patch 1957 BLAKE2B 5308ee19d8bec42bc23ba8bf6ee38b4d559be0bbffdae032138f32a5890e6524d3025124f48188f4b580035b398e4957ba246a9305d05577b58909259a73f396 SHA512 033e92e414d3e2d1db867aec980d82759a662cf46692e3cc908bb7b3428d5eca105fb81cbdd8764c54dd3d759d29e713ef085fc48aac183426d26fe68a48a38e +AUX probcons-1.12-gcc-4.6.patch 306 BLAKE2B 0b0dcba7749192be0361fcf2a0778e8a4ef168a1d867e9d1ccaa097fb75c8b580a255dacf25d1312e648bb623e5796370d695afd742304a06e2d18547ceac4c4 SHA512 f8a393cce2a860ea54aa18add7ba236aa43e21893925e4484b272190e29aa2dc27bf20b11edc5694446f027c6d8d6ff3c3f92383f0b0c8958b1b1d5b7564f828 DIST probcons_v1_12.tar.gz 43200 SHA256 ecf3f9ab9ad47e14787c76d1c64aeea5533d4038c4be0236c00cdd79104cf383 SHA512 ce061ea5cca4204d6e66beb893c1ba508f094b7ea3ee08196dc75a5443ebd0afca14dc8d7cd6c8da4ce1578b8750ea1981e5815408c0b122e8f97ec27b3bf008 WHIRLPOOL 82810ebf7ee18bb16268fcd526a2e5318812f4eef009ef13430f71457687d7d6f6a1bda3ee4f9ce8ab1251387315d7e105494ecfd3ba30da6fad7c4ac6304715 -EBUILD probcons-1.12-r1.ebuild 1184 SHA256 92b6899bc4b4c622babc99b487a98870b14ad8cddfa9aadf0a7f1d52f4777676 SHA512 da6c987d200faa0aa9a8a243eb8ac9a6ebe7381e9b1488477dbc659106df88aaeca8bb6005c25bbfad0757c5178e15b346a2872562705f76a921cccd68f8a466 WHIRLPOOL bd5637413ef1b319c4059c46561c4c0ed6f76b5ccda6b264b41afd9f36f524e6fd0c1e37aaad062dd293923d82a16bea82503b7cee8142861d559a25bf36deb1 -MISC ChangeLog 2534 SHA256 0a1a0f7c6dec4c3915219e2a959a14c05056a3efa24e73fdb3512570f34e0e1b SHA512 614bf838fc10d45811306fdd8f9ab65eb25066eb33482ed086d875c2550c99b42449c48840edd6d5e5e406b83781e27e63107c48592b557f748f8d5c7b5bba54 WHIRLPOOL 4329796d453f9304df3b76ff4ce1f1d56fb2d14a3a37f16e5fb507879ef2f972f4005fea35a500ead13fec8f78cd83dea859b2c71feda8ce1a3e0a7b1b2574f0 -MISC ChangeLog-2015 2437 SHA256 7d9d0fb934a1fc4e86dd6341350c939b45f9836b2ecb6a275d3712626c3ca4b1 SHA512 8d48e29d79fcf12a7ddb5396f1706f782e80471e50d07950c5f61fc5b3e2f0314676fc84424df5b64dda0dab15a55b97205ebb728afbfdf4aca53404665983ea WHIRLPOOL 6d99fce52c6fa9115cbd8dc50a95a1e6f564e1514b88dd72fc0e9ed027aac8e5dc84e1c6dd46e382770a4eca387f96fc376bafde4743d5ab261f180c91900479 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD probcons-1.12-r1.ebuild 1184 BLAKE2B 9ceede9555c3fd4e978036a8f97ddd16c042d812273dea733b0e6ce1a835c8e309b28061011d8a2df754de50c4588f2965ae3242b950629fc9746674c0718d48 SHA512 da6c987d200faa0aa9a8a243eb8ac9a6ebe7381e9b1488477dbc659106df88aaeca8bb6005c25bbfad0757c5178e15b346a2872562705f76a921cccd68f8a466 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/prodigal/Manifest b/sci-biology/prodigal/Manifest index 9b0a5204df82..b5e7d456bd68 100644 --- a/sci-biology/prodigal/Manifest +++ b/sci-biology/prodigal/Manifest @@ -1,6 +1,4 @@ -AUX prodigal-2.6.3-fix-build-system.patch 1004 SHA256 a591b4457c5915767f4beb8e35dc24cad27c7465fc7187d2ef7c4cb3279d884a SHA512 c96e93cbe344bbab43b03b0046b1bca5030f4a731a0b43ea4d4ee87d303502d172fc93975a9d7b907d6ea6beeb865113122e0e2cbca7d660290994bb8214a17b WHIRLPOOL d30873d8195731fa6d3e064ab29ae955c7007c6768bece16b51964678cfa339097cea3fe013bd35550710963aab20b0e8475b469b3dd6f2743cf910027e0c793 +AUX prodigal-2.6.3-fix-build-system.patch 1004 BLAKE2B 5a0323f6f4440e5f45805e8eabc32374f7d47760fa62c426a776a6f5bb573f356241618fbb231522c05ad950b3de71f38787bf848049f4c6fa174726c9134ee8 SHA512 c96e93cbe344bbab43b03b0046b1bca5030f4a731a0b43ea4d4ee87d303502d172fc93975a9d7b907d6ea6beeb865113122e0e2cbca7d660290994bb8214a17b DIST prodigal-2.6.3.tar.gz 610934 SHA256 89094ad4bff5a8a8732d899f31cec350f5a4c27bcbdd12663f87c9d1f0ec599f SHA512 6d6ec310143c50c0d65dbdbd26d6d271839bb23b1da376ecef20059731a9e643d631613eccaac2eb548b295264b9fe58c21b083f1511a6554912cb7d5351d541 WHIRLPOOL d218510194777a15699cde33641768b24844e2077a1f63274a9d02c0d494c0d854dbbcf638df92839acd89916af63267d8e50b307a325f2e8026023675050fec -EBUILD prodigal-2.6.3.ebuild 518 SHA256 efe4a785351a8be9cd3432dc15c41724ecf305d6fd04faa9e54ccd98773bafc8 SHA512 44048cc1a61e2e7decd5b4dda026e4b89ba54decfb1f63ad3d378c3b8ebef707b3e3c2338108186be9a3f9400bca165f3331a1f1dd668345716b15c01189a0e1 WHIRLPOOL a4a56de898c2d2808769b4d6c9483d792c5b7f62c4d9d093724bb667f82218993633274543562ebe32f5eacb77ce0e3abfa72524132382b61928245da89e1e46 -MISC ChangeLog 2849 SHA256 ef72db7ba5819079c8675ca2da4b53e194874a6ae35497bfabf03df3f1f97b17 SHA512 901c7cbff9425af0de5bda56919a98e38e453ec433772ad7848daa4a8e33ed9c2fdd73ee58c5648053a01e918c97158fc3d3180aac96b8dd907d0ae56e65cb50 WHIRLPOOL c40dc7b605ff2d672714524c65ec33b467beacfa9f7be3530a4e3aa3358ec89d0ab15ee85f2320953f7a204c2c72893de757bea68f801c482d981c72d1745690 -MISC ChangeLog-2015 489 SHA256 b2ce355b89ace8cf2e9a0feb96fe463dcc091efcc33d5dfb783b6d219394a5e8 SHA512 3c06823730bb20bf16b25bafcaf46d80dcc81c8bde872dc6d7062fc4e41407c765db070811fc87f0da92ae91f8abbd21c9794d225db020bf3686451639e74c78 WHIRLPOOL 3a1470d72ae3f1c9e0c48fbeffd108949a1b5bfc10ae11ff39a258c9c5044fbaad3e241304734ff9c50deef1bb9e4ab33a51936f9a524dd2931111d692741701 -MISC metadata.xml 395 SHA256 a2d34a89290a1b9bbe5f012a54abf168ee3ba251804c4bd1af93a0fbe20fa9a7 SHA512 d824206729a7012b67bc0dff475f08d769484c601165a72c159383cc23247726cc38d9dae85492f39cdae99dc83c2a4adbb44cc8abded5ee8cad8067bec7873a WHIRLPOOL 8c63f9d2150459cc5b406d808fc3aa322ab446b1ba9ec3700cf553ff9f3027e11467c5f134cb4ae1311ff742fbadaf506d8f592b0528b33214bbe4970729cec1 +EBUILD prodigal-2.6.3.ebuild 518 BLAKE2B 80e85e8507eed4b64fecf813c54f2fac707cb8aec21182f40ffebbe83ab867eab3243af5618eeb01fbcf1ac33ff06f3bc060ec78f245da1afa30475b2d4220d8 SHA512 44048cc1a61e2e7decd5b4dda026e4b89ba54decfb1f63ad3d378c3b8ebef707b3e3c2338108186be9a3f9400bca165f3331a1f1dd668345716b15c01189a0e1 +MISC metadata.xml 395 BLAKE2B 1586c9df280da87649ae6b23e4eff71be6db8d61a75a486009dc43ed51f5d3474760563d873f3acbe5fbf349744e6af333caf9575616f7c9af63b3f5b49d7132 SHA512 d824206729a7012b67bc0dff475f08d769484c601165a72c159383cc23247726cc38d9dae85492f39cdae99dc83c2a4adbb44cc8abded5ee8cad8067bec7873a diff --git a/sci-biology/profphd/Manifest b/sci-biology/profphd/Manifest index a1c2c78c4d86..c9b8ddabe143 100644 --- a/sci-biology/profphd/Manifest +++ b/sci-biology/profphd/Manifest @@ -1,8 +1,6 @@ -AUX profphd-1.0.39-perl.patch 376 SHA256 3452144a6f1dade6ab5219b757975002b617b04b1da151593e810bbd561be500 SHA512 e4004dbb835560b3a2aa140aea0ed57812ee9dc11dc18fb7b1dbdeee73bacfef3fecfd686f15fa87cde5597ddb322057d67fa61708ba3077c5449f93a0284b8e WHIRLPOOL 5fd5111f9f5075a7533b5af6e72976cab6404f36b3be3558809815553243aaad4e763e7cc1ec8e06c3c841617200c9c7396aa64c4728f6224b4879416de8f3b8 +AUX profphd-1.0.39-perl.patch 376 BLAKE2B 16911d2f6952f9740f3cd16121bf6dab5e5571ce1f7e5ac671dde719146e55f2735f2951629220fe56a93c1243e792ddd820978163023b44613d8d08d037cd6a SHA512 e4004dbb835560b3a2aa140aea0ed57812ee9dc11dc18fb7b1dbdeee73bacfef3fecfd686f15fa87cde5597ddb322057d67fa61708ba3077c5449f93a0284b8e DIST profphd-1.0.39.tar.xz 4406776 SHA256 4ff67e7b4dcb5748ee5115f1e7b9de7de6ca1c5a7982971a7147fe4ee5a5d288 SHA512 0ea6a34a8dad8fcd0d8b23e7a7d476e211587bf580389e9f43ed857bab7853cbe5ce698d2a610e9344e9bc95661cf074355310ea02c1a03e6378058ba169b15b WHIRLPOOL 7e149f3e724ae5e727810ace6a1063708c35bb957861e4873c0763e48af5362ea50757d94c592052fec9d6e63767d036a39104a72ba6deb981c1f6023f19464e DIST profphd-1.0.40.tar.xz 4491592 SHA256 50c85da552993758df191e3e06910fb221a156a8eaba94badf5a716b04648c5c SHA512 287f1a548030e7978119788dffdf2529e0018cd772bc820e116f79ed10cefd440645424b56415333362098a1ed32f4841d3fd4069adede2a95968f81c63956e3 WHIRLPOOL 4d7ac3cf32607cefc983116fa8fe8e795e92e89590bd612a2180e9fd59ec5c60220b065a2fddf3552aa81a3d02f852a36e08086d0867ac28ded2faf0d31a38ad -EBUILD profphd-1.0.39.ebuild 833 SHA256 5eabc85a7d5f82757e1cb0bd01e1e45989018a497ac95b23920ba25fdbea18cf SHA512 a2e15d1bd08ffa70e966001cc1a9787e2ad4c736e4275dee7ea8695ff6b36869c6acc60b6ae3e1fc607f86adff8bd5ae518dac2004f6c3b9657c5a53a732a123 WHIRLPOOL 87b646cf24398916dee0b1dd5625ef2fc09e2820192b88643aa2b1ce3c30d753bd88880d8fedd060479f070b69ce84ebd78362b38a9ebec28039f8fbbc9531f6 -EBUILD profphd-1.0.40.ebuild 841 SHA256 8e3275137c7f8b644f90901b47380f87f767033629b8b870463884c2e3b4e0ca SHA512 c08773dfc516365b2d75cd0f7869f8c1178a17921ebd65e5ea1b78c236449ea818ce3086e63fd43eeb0ed9b4919b48e7f9f9d1e5a148de5a8e63342bf45d2d9d WHIRLPOOL d37116e5e176754bb004583eb0fd9bfc9b93ef7ee515318e89096cbce4c6fc077a0faae0611d69aac4d69c5bd2a550335ed75840f548bb2da6125ae0bc4d5b35 -MISC ChangeLog 2522 SHA256 2b57417f14f49a172bb9a6e1f06cfbf8963d4529af5a7b441640bb91cdcf3356 SHA512 46d4708b0e051161ec27f737a34a93991017d801d4ff8529629ecba6421151cecde05f08638071fd414746082f704c240cf6d2dcb9c42d839195f4e343ce9612 WHIRLPOOL a0a43bfd5b9026e5053ae9cc1c12043d4801dcce42e021ca0498c025bc1c3f474e096495bf567da6e0a9c15e1b9c90f4e946a0d8054045eca846cbd910e1e05b -MISC ChangeLog-2015 726 SHA256 6b1b7fe7d0c46bcdc7cec211cbaccc8760e115256be3533b14356084cf707b7b SHA512 fa760ad44e8fdfe6c16727e6b2c8820ccbb1d06df9f1a1d6750876ed734fadcbc39fb56d5e3c7098b479500b880e236a8f744c17b257b997a3a06e0fe0ef81e6 WHIRLPOOL 3eb1e886b3d977cbc425e4be86c25d2f1804cfadd66c6ad09bdf6dd023bd0e7afba1807b08d3ee9de64888f6e91c86b48ada852054f6a0a40283fadbd434679a -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD profphd-1.0.39.ebuild 833 BLAKE2B c173db3f129f9aecf3c0d8da461ef24c07b8de59e1c7adae3e9c39f227951b889fbcb71b78deb6fe45a7850f41cfddf87004fad251fdbd0425b5a7d6f96d60e5 SHA512 a2e15d1bd08ffa70e966001cc1a9787e2ad4c736e4275dee7ea8695ff6b36869c6acc60b6ae3e1fc607f86adff8bd5ae518dac2004f6c3b9657c5a53a732a123 +EBUILD profphd-1.0.40.ebuild 841 BLAKE2B c9b34a5bd892bab4dcc868ea1c3a5404c99d6a10f82ac217ea315a2203d4f0a7c65372cf5714eb480003729931362afdeba13e21e80c4590e392cd14d0bffed4 SHA512 c08773dfc516365b2d75cd0f7869f8c1178a17921ebd65e5ea1b78c236449ea818ce3086e63fd43eeb0ed9b4919b48e7f9f9d1e5a148de5a8e63342bf45d2d9d +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/prosite/Manifest b/sci-biology/prosite/Manifest index 2a06a8361b57..a14ac76fd11f 100644 --- a/sci-biology/prosite/Manifest +++ b/sci-biology/prosite/Manifest @@ -1,5 +1,3 @@ DIST prosite2017_02.tar.bz2 9234253 SHA256 ad278940c7a92ca6afb0fd8202e904c81823f8cbffa3f34319c3984ad1428216 SHA512 2b8a26a44d62d17108afc43a3ab65d024f76e41ea9c9f477024700621323d2606fcaec54411e1d3f4ddad40717ad9ce3a1989ffd92220e0d3c2acf70400d2e43 WHIRLPOOL ecde335cfb4b13359318218ac0ae4273c2e7653a79efd7bf08c58ff5b4eaa6223e3189df9909d60f5357d1c2b3ca2cdc7fbe7c5c9b0e9ecdfb961b7207076c8c -EBUILD prosite-2017.02.ebuild 980 SHA256 fa593b38a0d72e6a24e9c366c50396c1f5b8a453cbf704114a4c51a6d6a3f44a SHA512 5911898bd4cb41283277dbb4cf9ada173f29bd0378af4b7f679d5415a368085d00826ee0c709195605a03b3fc4cdd96a8d9b1613e152ea0347d9ac0d8dfdef14 WHIRLPOOL 6793dfd2a05b4ea65f79120df6d60da21624d9a846f0ba561f0b7d6676d274daab86fac8e55cdd984388c2162eb63ac3900930b098c8483bfb9195064bff1bad -MISC ChangeLog 2588 SHA256 4e481073a7b36f5ebbb32129ae644d881f07642f459f460105d88dcc871421a1 SHA512 dea2c2c1338c5e5a8077f7277e636ed6420d183140448fdc37489cbcb7fc490bb5b68ab2028e7132f3ebdf1bfa3039f6b79acc418ff31d77930077e6d77fa67a WHIRLPOOL d72a2633b0b584e3f251172085a55d00cb81c055f43001fbaeb0dbbe2f157b27d4fa465c65f470feaf673074309d1b6852e36dec07034946acdeacd72adabb25 -MISC ChangeLog-2015 16628 SHA256 5d6d0fca9742214825b3f39087c4512dba2f70e9dd2f1963982d061f5b8fca87 SHA512 29f53287f954cfe4dc5e9a4bdf6a7ee6aca30075176b9660dd1039b59a55c07426edcf9992cdf790a9e55c57891230b970d35a5402eae1f21a9045d9f8026d52 WHIRLPOOL 14d198b1ad9a1c4af19a0b85af0da3f0f72ee35a66e67ba38530784ef4e1be17ab00521e723d066054547f9de850ccb36892bb00b5528a8ae5d7166147816ef9 -MISC metadata.xml 817 SHA256 e30e900a93465725045005d36918a821eac5e5dabb9c7c3c76c43c252c8056f3 SHA512 28b74af20192bc861cf78d43e55264e84473e471ce6dcdc63f30c3b64d4727cd3e8db5b4934d79ece4a3d732263393264d9085e0e53ce16649a6269a3c40f8e9 WHIRLPOOL 5e539355b00158a2147ee0e339640b11e0c4b0e4fdf778699fd3ded2e1fcbfc32fe79e476c493138460872a805401dff4eaf7c36e2031d9ac5731f20174c48f5 +EBUILD prosite-2017.02.ebuild 980 BLAKE2B c9f2ac051576b919e9877798bc0e0f19fe483d3d7b4ead717c27555501a841f5e5856da69ead2af90087fe0dc893feb5fee3934e81ea6e0c4d768df2ef7c5b02 SHA512 5911898bd4cb41283277dbb4cf9ada173f29bd0378af4b7f679d5415a368085d00826ee0c709195605a03b3fc4cdd96a8d9b1613e152ea0347d9ac0d8dfdef14 +MISC metadata.xml 817 BLAKE2B e6b944c3a297b0eaedfd5e3eca09e4c27f4f4b6f1dc7a93d66b5ab265f465c326b6cc1c26f167b41eb57c43f8c7835415dc91b6fa6f0a4b389b2a99582e435cb SHA512 28b74af20192bc861cf78d43e55264e84473e471ce6dcdc63f30c3b64d4727cd3e8db5b4934d79ece4a3d732263393264d9085e0e53ce16649a6269a3c40f8e9 diff --git a/sci-biology/psipred/Manifest b/sci-biology/psipred/Manifest index 7a0c8ba961b3..2475eee865b1 100644 --- a/sci-biology/psipred/Manifest +++ b/sci-biology/psipred/Manifest @@ -1,15 +1,13 @@ -AUX 3.1-Makefile.patch 1103 SHA256 de49b937edc714ba84ea2ae0900ea92b73c58048fafb8d616e8dfa44b548e927 SHA512 6e0daf4478b5b992ed1647bf653320b18cd2582ca69ebe761654bd4bd9c9c46b7de183ae84a28582cb5543603362eb7eb6c306ff562c3ec18c292d89480fd127 WHIRLPOOL 2d491dff1be16cf09413ff2f1087bc6888509a4db5dad56ec79422ed42e688855e1ff6f6d456257631b69ca3c185cba6143c1dcad353fef2b9af49ab9a2f5501 -AUX 3.1-path.patch 1128 SHA256 0b91a360760bd27f4ba43639d32e891d5576595451e1f7285632fc9ad38a80fa SHA512 e6201669db910f074bb13d1b781416d8d99300f328147cccd7755d5d6595b25aa45353f6da6566f225a067e94ab8ee41ea89bfd75cf2cdf2c076481707acf88c WHIRLPOOL 33802ea504dea3445c8024b9c13eb351a009f13ee4b4a1d126392e5d807006d08dc0c582972eac2d13975d9acc9f6b5ccbf1bdc09115810abcc63dcae5e393cd -AUX 3.2-fgets.patch 427 SHA256 95d68881c502c567025eb5e74fcd545bf012ded48ab2731aa70827f0ff449696 SHA512 a8a59a765057e20b9c606b8e4d76b5657a9a06150247b426d939805547148ddc8a1cb4282e04bcdcd756bfa6df7bebffcc77b84f62c86be2f643069d2ff913bb WHIRLPOOL 92b0c8af14387db54eef5ea171ffd0c096658f6922729a6a1a1836eeb14b21b1feb3cd330dfb564eb3aaa8435d18b55f4559da96fb32f666f88349a1af3fb191 +AUX 3.1-Makefile.patch 1103 BLAKE2B ba9c5a7f60d62d66d1cd5a5e9b0a68ffe5c99124d02eae1924ffe92ecb2d24d7224e5bd0b37db3cf17da4f39d3c8b6b53e04466da8976e71910b9dcea9bc59ab SHA512 6e0daf4478b5b992ed1647bf653320b18cd2582ca69ebe761654bd4bd9c9c46b7de183ae84a28582cb5543603362eb7eb6c306ff562c3ec18c292d89480fd127 +AUX 3.1-path.patch 1128 BLAKE2B ea445427fe2ff574028b3d82ae353da5a1dfe3f5c7fade419287f6dc2e819471b4ec007dfee7cf71a1c958082a8dfa83acd5046208e0a7b16c07d90cdd68073f SHA512 e6201669db910f074bb13d1b781416d8d99300f328147cccd7755d5d6595b25aa45353f6da6566f225a067e94ab8ee41ea89bfd75cf2cdf2c076481707acf88c +AUX 3.2-fgets.patch 427 BLAKE2B dba911ef9d28c230e38d326336fa7adfae31ffafd225d525968f58b1013df2f5812b0c678f37576714c7bfa396c7378b2e1201f8c6b2bea844c2e042eea7c0ec SHA512 a8a59a765057e20b9c606b8e4d76b5657a9a06150247b426d939805547148ddc8a1cb4282e04bcdcd756bfa6df7bebffcc77b84f62c86be2f643069d2ff913bb DIST psipred3.3.tar.gz 1239746 SHA256 133eef16ba4ac6ff5e10a757290ef794552833f42ed8251ff866ae56d9527c40 SHA512 38f5dd0f6eb6fc38888f9a850604b95904a8626d6862eb0b2a389caaf49af8f81436aa78a087da22281113d8afad2d28e5109ddade7d17718c1028eed8325b7e WHIRLPOOL d3883df88bde12a0f5ba6e195dc37b7104db36d16b5846b978fb045def6c4452edce4361dcced27ed36937bbd8d0e8dd4391b8592dca390941b3450e49cc5d34 DIST psipred3.4.tar.gz 1102416 SHA256 c0eb8877313eb0564d34fc4d0e2d8d22e09d84d245e41008227560a10e64da9d SHA512 1bc7ac41a213766139324540ba6952538f2890749ecf217d771b4ce59e25231857d38c237ea573674f11a82300750e9a3ff628ec0156864863a9528a144cd919 WHIRLPOOL bdb47f296db1172df08f84b8cf18782e8585a8bc49f190b9783192db0e9d632bd6660437e8a35c24bb5970ca7a556b368c5a93373772f20d4be9a98ef963b902 DIST psipred3.5.tar.gz 1101579 SHA256 107979a6bee968ba1df1ac1ee63bc1611105b83a7d519ab814f848ed955b76d8 SHA512 a7b3f7d149f6a29cf0b48bdb900f6983d42af01132d8b54a7be88994d09fcf27dbe57115d41ec9654da6daf6898d5986d08fbdcefa3a4c81af0d358500cd40c2 WHIRLPOOL fb07fdf550af6c9942e131a4856942c74adb3a7954c433ac7bc27680d9ab2b3db82a5178a15bcea224f7bb0da3cd84c94a4e9188be4fcbd49851037f631732e3 DIST psipred321.tar.gz 747151 SHA256 5e88f2402e333be401b3022937b0167a33203f6289a84dd344941546f550f1f8 SHA512 b742f5fd3151bd624452bf37761fa66d364ea5b28d9d005ae6ce6f52fc6f2b17df31d6f1e600bd6c57776a1812f22b1eafbca781b430811a010d74f157a75cd1 WHIRLPOOL bb7111851ffe533b30fd6b77fb1ae396f0dd6506ce941944974c3b5c73c41d1a5b04c5af3d7e697aeb0640c03168b78d8832747940ed0de087df784d2d27e9f1 DIST tdbdata.tar.gz 40241247 SHA256 87b7743538898f6cdf89cc5c18e1ecd040bc6223a01821d2bfc3109f4571851f SHA512 f96d7ffbb77e129251e27f62b7f099d944bacd14935e03fc52c9f0b262cce1ad477ad43520a93b407951fb8f5dd3ba2e27ff6b5ae8a637ec03bc02f8c7c3990c WHIRLPOOL 37bc0912c6a71d1396489161465c690fb63d28167694d2e43553b6684c1f1f88866b2bf71f9531c7a7f41fc8ca81a6c93c2895ed498a07e3c4836f8c8bf4a34e -EBUILD psipred-3.2.1.ebuild 1109 SHA256 cdaf7bf5a39001928178ffca0f687c1d85a64ed4a3536404e08944db3ba098da SHA512 9971b494b499b494b2a764672a074573184956fad453971b7dcb962a0728493c8339e9fba484fbb0062e2436b72516035f74d363909b3b8e85ee6060061f95a0 WHIRLPOOL 871dae22f71631ddee2ebf20d339f0e6a79ca839087e2e776aa0a742ce95897674b2e050f23aac18e757aae78e79e6c86f8059482dfbf73fc884ec9f0712a451 -EBUILD psipred-3.3.ebuild 1206 SHA256 53ab24fe6a7226162ae35d4217b6568ed4e38b21d441893f15bdff8fea05edc0 SHA512 56a3c75dd285784b36d546a3722451915527ba33821d070feb16997212749b7a8a85eaa4940dee1665bc2c28bbc4968bf3d470283852e0224c2a3a01e6347188 WHIRLPOOL e49671d02a99dbedb2d28680f11c57820b039a6af51ceea5e027cdff51d3ae5b86f9890cc6e99a1f3f1f9caa2a0750cbd151270dfc7b8214ed8b052ba4cdfe59 -EBUILD psipred-3.4.ebuild 1223 SHA256 04243dfacf95981ae4bf1ec88a99c96ed705764b8aaf8cc9e94d6ef77dc7b770 SHA512 3c657fe871ed89e1138a0a305ab339fdcd92d32e23fd512f8833f849ebcc725f313eadf6236d4bbf5843dab469eb5471e9fc9a0d20113a02e38475d792c60521 WHIRLPOOL 9aea4ff15548e4617f0bca76c24c5dd27938cb2e7500f0653879903eef38e5192416f0dedf0de4952870196f8ca8684040d635ac878a8b2df1c4d2de22174f86 -EBUILD psipred-3.5.ebuild 1223 SHA256 04243dfacf95981ae4bf1ec88a99c96ed705764b8aaf8cc9e94d6ef77dc7b770 SHA512 3c657fe871ed89e1138a0a305ab339fdcd92d32e23fd512f8833f849ebcc725f313eadf6236d4bbf5843dab469eb5471e9fc9a0d20113a02e38475d792c60521 WHIRLPOOL 9aea4ff15548e4617f0bca76c24c5dd27938cb2e7500f0653879903eef38e5192416f0dedf0de4952870196f8ca8684040d635ac878a8b2df1c4d2de22174f86 -MISC ChangeLog 2993 SHA256 135a77956fef53e3475509f49d2b19ec67a96443ddeb6d4bb5867431395ba9a5 SHA512 19e6745808c8d8c08e3fb78b2314a462e3c6919683c3605baf46c1a8ca43ee8e32dea8bc6f935a11e083fb5fca30d33c83d77beaf22e66cee666ed0f46fe2d16 WHIRLPOOL 3beafb35171e699e0b101b9570d84c2e46ced2e83007996477ce77f2159dc072ac735ec919184125189c982b68fe4cc417f9acd5a8f5623fab5623641260b40f -MISC ChangeLog-2015 2200 SHA256 4d2a46e3b4f6985b5d64047420bb49a7b3bb7aff55d5e7240fc2ad442efaaa88 SHA512 74b858353af4e0d9d06b056c3c8aeba38bf089aa15a9ad5b8e7c50e00625380f4ab556a04b92ce78fe4f01e68618612f8af580a90d76d8a216e8e32b0f4ff106 WHIRLPOOL a5f94edbcb72cfcd0976e5026429ae263d1510f4d826ac88c496eb95da1136d533141c086cd4ff5ee56331d22a0f14182af6fe324d8332da1cb381befb03561c -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD psipred-3.2.1.ebuild 1109 BLAKE2B 7b0b36de41275e0da80e830ed7294181cb36586189adbf5640987785203d249dcf691e83067a6cc07a3452cc2ab39a2fe835cd27c9d58c9286660fc846133935 SHA512 9971b494b499b494b2a764672a074573184956fad453971b7dcb962a0728493c8339e9fba484fbb0062e2436b72516035f74d363909b3b8e85ee6060061f95a0 +EBUILD psipred-3.3.ebuild 1206 BLAKE2B da987c4a178ba51b300da549c30bc17f65a6aa0ef3c22d827f9101a36cc2ea9dab7ad4b8af3211166d8c7a81d14bcde6e72236ab7707cc5d32f1340d11e9ad0e SHA512 56a3c75dd285784b36d546a3722451915527ba33821d070feb16997212749b7a8a85eaa4940dee1665bc2c28bbc4968bf3d470283852e0224c2a3a01e6347188 +EBUILD psipred-3.4.ebuild 1223 BLAKE2B 2b287a7f5db23106db40b3cfdc787c6bae707f81d47f8b1b729672404e289a063eb6befbf3ff2a2c6c1e414a6c23a2abb8a3a4f82fb0291ac01ec0497ad83c43 SHA512 3c657fe871ed89e1138a0a305ab339fdcd92d32e23fd512f8833f849ebcc725f313eadf6236d4bbf5843dab469eb5471e9fc9a0d20113a02e38475d792c60521 +EBUILD psipred-3.5.ebuild 1223 BLAKE2B 2b287a7f5db23106db40b3cfdc787c6bae707f81d47f8b1b729672404e289a063eb6befbf3ff2a2c6c1e414a6c23a2abb8a3a4f82fb0291ac01ec0497ad83c43 SHA512 3c657fe871ed89e1138a0a305ab339fdcd92d32e23fd512f8833f849ebcc725f313eadf6236d4bbf5843dab469eb5471e9fc9a0d20113a02e38475d792c60521 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/pysam/Manifest b/sci-biology/pysam/Manifest index 98f7f4b6eb34..d1ccc97b614e 100644 --- a/sci-biology/pysam/Manifest +++ b/sci-biology/pysam/Manifest @@ -1,6 +1,4 @@ -AUX pysam-0.12-fix-buildsystem.patch 2356 SHA256 973ab655536c8d0d8e815d1a227655aeb1389d77b488bcc0a40f1cd20faed67a SHA512 24c5c521ddd2e8a88a713c2cab2aedb0cd9a589e2ae87696a60815f9714e2b222a5e0824c5ac293f9023f6f772a599256a5c07228b5a2df40b62a1bf7616c84a WHIRLPOOL 7648f5fb4c2db008a2c667f12f366dfff8e8f46127580980f893da7face03dbcbe7d70c1ca8cf8595e086d7db4acd8b6339eb51ac124bfd03cba3e60ca5101c4 +AUX pysam-0.12-fix-buildsystem.patch 2356 BLAKE2B 95542f99b411a00eeaa24836cb7489bf2bbf690d804669f69f6f1a8c07f66d9c6ef34624eb511036cd36b1268b49959d38db497cb557e9cc40f3a35b2d349f4d SHA512 24c5c521ddd2e8a88a713c2cab2aedb0cd9a589e2ae87696a60815f9714e2b222a5e0824c5ac293f9023f6f772a599256a5c07228b5a2df40b62a1bf7616c84a DIST pysam-0.12.0.1.tar.gz 2672020 SHA256 04837bf0b1313e57d50076f228463262b9982c410b973eb184c033528f83d523 SHA512 31460ca98ad2ac5489905ffce76bfbb5bf4a295159f3cc8e088c78dcfbfc34b30d6f7871fd1454de01da98f82b7438ac2aca678a771d7b97ae0029a418f29f1d WHIRLPOOL 5bd9f29e7458cac3839aaa9703d4c5740b1268644947f31ce7d3ddd12e0ec1948611ca5228323ce9b3b8fa5a5e0623c6fa0a0e2ce7f197fdb81aa5465915af36 -EBUILD pysam-0.12.0.1.ebuild 1204 SHA256 6e6adf1e8d4641fd59a98212b62885b05a35e7851f6773952e9b21853cb69975 SHA512 cca0548e77c3c3cd10f6253cdafb7be9c2ae094490aa9dd019b7b09e5cd0f273e9a350275a35eb55d6ddce4e46cc549f7b462f5fd4b06cfa012f1344263d41a7 WHIRLPOOL 50b3df57a0617b32e1c41fe46581ca867278f675a08ce78565be45b7d6ed5f94a902075b2dc9a7eb0307f340da5e319f88c2a69e72a588339a4d8f7d3cc490e5 -MISC ChangeLog 3211 SHA256 814821b212b72f1e2a855be2286756b938d2f77e77699c0c74a6780e9bc139ed SHA512 a2d8aea3e52e94118ba0474fc1188fb2456693a610a2ce4654ceff67fea53748df8745d5b038439abf5424f085f65314721225f0cfb65b26535ae88ddf988060 WHIRLPOOL 6630495ece6d70293fde494ce8cac7411687353f32f1b0012ad5eddea4e50eb6559ec748d4c339561327119217771a8de6ec5f108ebaff9442752b4ce2927ec2 -MISC ChangeLog-2015 858 SHA256 1aebf8e09643d1ee9a87f229d0b8813617a053ce373e3e394463b9914bdc84e9 SHA512 8ad50a8a9a15a83cec9c562b3f23b1b54c15aa2c0fb0c0757fe8b6471ac4dcb17d3cc5f98d3a669def5c3882b0943358280cf1d2ef75054f558d438787d37b62 WHIRLPOOL dd094a7d3b5f6cef469f36980243a9b3c033ca39c2f89052cb67c2c46395325a78f4e8968fa449d5b48b4fc6a8d976645cddf3d313e7d499011afddb57ae3703 -MISC metadata.xml 410 SHA256 a683ef3244d84e185203d717ab774d02fbc0dad51f7b95149b3dcf6fba0347c8 SHA512 38bcd511561b2466ef5d39473a6d1a838af0aff6eeb520307331fe0fc3177be3062fa0be39f48a333bb8e31841115cafd9dfb80a5985c316c9b8df1609f00810 WHIRLPOOL 0d34249bc0ce40ce5ede763e5ff599b2de67a6d07977da6ae3498d9d35be854673e02f69d3c20449998ce169d3cf3da76472c8ed0b5ef6d16a7de3110d536c01 +EBUILD pysam-0.12.0.1.ebuild 1204 BLAKE2B 4e59634e13a123969b1749122b197b4145fcc9db660003d1d812a950d06c246437a60b439ee5f0c18c378ac8ffd7f44c1031f51773de52808d97759f2b65071e SHA512 cca0548e77c3c3cd10f6253cdafb7be9c2ae094490aa9dd019b7b09e5cd0f273e9a350275a35eb55d6ddce4e46cc549f7b462f5fd4b06cfa012f1344263d41a7 +MISC metadata.xml 410 BLAKE2B ed86e3ffe38a306e581762625b37cf6596dc2a2ba404406ab12f681d5b48529764e281d40411bedbdf6016bc57d02adb705e8c8703b8120cf89b4961f75bed67 SHA512 38bcd511561b2466ef5d39473a6d1a838af0aff6eeb520307331fe0fc3177be3062fa0be39f48a333bb8e31841115cafd9dfb80a5985c316c9b8df1609f00810 diff --git a/sci-biology/qrna/Manifest b/sci-biology/qrna/Manifest index 5b764eaffe75..9f7e80a5ce5b 100644 --- a/sci-biology/qrna/Manifest +++ b/sci-biology/qrna/Manifest @@ -1,8 +1,6 @@ -AUX 26qrna 30 SHA256 218d879e5ef893cba33d8be7e0a6cba3f08c0a475781bbbb4c32bde6e79a32b7 SHA512 ba47d1fe1cba68ca7dce369e814a67cca24339a1ec213d206001b4f87f8939d81c7e59bc285090e5ec2cec05693f560c9c4883cae8f67891f6053d9bc69cc46b WHIRLPOOL 2a4d368c898fec40b1a48484b82e6ea29d9e95a8c99622bb45d59bb999813461314589bfeec2fa223b178837f69c04ea99bb8433a9481e91464d1357e0f29547 -AUX qrna-2.0.3c-glibc-2.10.patch 7571 SHA256 17f34c9e3087f2c9d2decd95e07663813087843a778db45c5be793c6b51bb82c SHA512 afa8767baadf99dafbb0ce4fa8b31017f6a12e1eadbcbd41a7e04e571d3f059395356178df3ab28f8c03c10f227123361590357c6ace6256727322ade00228e6 WHIRLPOOL ff1d1a6d0d045b406e6616512f0f2d5fbb0513a1331b475e2582e9d3eb1b4fee8b0093db01e0220bcef55470b892f57823aac8664f3ad470d5a90f91775fe37f -AUX qrna-2.0.3c-ldflags.patch 1368 SHA256 ec99724754ff3f667be139832fd871bd93f7ae0cf7247fb8d15696b0315e01d6 SHA512 4b1be14c664056eebb914e8c8223686ef0f345c860bd5aca82dced67b9580a205ef9539c563c0b0c646a9781ed0c58c4cec69d71bceb2c410dc485e9b5881c54 WHIRLPOOL 538627ab602f8f92af014e38ce5764c574f2820c7ff2c25b3f999a2e658413421c886abe7451443f907f0db52d3fdb9b6f4fb4011232e66e3ac79039dddadd13 +AUX 26qrna 30 BLAKE2B 07faad9f2143edab789c29f999182e76a87ae82b9e6fca3346fc6391f7581ce3595a70e2432358e527a0a4178078b0e8f881537fe90a069a0b09211476520648 SHA512 ba47d1fe1cba68ca7dce369e814a67cca24339a1ec213d206001b4f87f8939d81c7e59bc285090e5ec2cec05693f560c9c4883cae8f67891f6053d9bc69cc46b +AUX qrna-2.0.3c-glibc-2.10.patch 7571 BLAKE2B 3361fa6c31af0fa7f01e3c32bce2a8570df69b06517f9eb46a2f4f249acc972ac15da4fa5b9c1211efeaa91ee7d41f5c5e2392d89ead41252b5f5675826d4c21 SHA512 afa8767baadf99dafbb0ce4fa8b31017f6a12e1eadbcbd41a7e04e571d3f059395356178df3ab28f8c03c10f227123361590357c6ace6256727322ade00228e6 +AUX qrna-2.0.3c-ldflags.patch 1368 BLAKE2B b3f5cee42c370545e348e86627981d4568a84a673faf32d041b0ebbce0e782c8cab1aaa41c2c48f43704886035431c64b035a99b98225363f5ca2d0b8b9c0dc2 SHA512 4b1be14c664056eebb914e8c8223686ef0f345c860bd5aca82dced67b9580a205ef9539c563c0b0c646a9781ed0c58c4cec69d71bceb2c410dc485e9b5881c54 DIST qrna-2.0.3c.tar.bz2 6423705 SHA256 fc88b58dddab26f20477a50340453e9d360ea34956ba526f7db6959283399b1c SHA512 98710bcf8993e2c09ec1eb33632a18ac993ab817dc95a865200b0868f79b95ff61f5f7d3f0c1c33de6d26f674025ea11a8c7d8175b96071e4594daa252fa52b5 WHIRLPOOL f7c788629f6580e3f1c2ccaa5109ba13d8f103abfd3a88f3ef127577fc825fdc7deef102325ab2645a24ba1215d59b21e2c77448631c90d6eae47aa95a9463e5 -EBUILD qrna-2.0.3c-r2.ebuild 1112 SHA256 f9ca425a3e49c612341c97eec9f52c95bf295daf367acff044cc7eb95aeeadc5 SHA512 70e7e97f322970434fc5ee5abd8b75ae085fb588ea467673e01ede4b4778e819e41df83f9df1fc1d10e6ede9b52d5356519f8c4987d654f4038fbd7c5c90e853 WHIRLPOOL 0755270accc5c54d4d8a43f0f0e785c55853389fd6925ac3a7f9e7e78d05abadf88fe004aedf2b1e87c728cba96a03a9be1b9627293f47242c15ee929978860d -MISC ChangeLog 2517 SHA256 eb8cc8275ae8009fe4737eaf621bd949db65ea55ff17a5aca3798e5b57a946a8 SHA512 2f0ca6918c46768471a7aa29e5c6355a2a9704f3c21e693db9c10f9305a93bd84e5988cd8696fc7f8dba9d11b2a8b6ea32ac7816f59cc57bd930e24250cd012e WHIRLPOOL aad33d26f7cd4757b2b35a30ee87654f0f0288703069da244cd0f553ce5c9339f1072087fb4dbb27469a47055369a3e27cac72b73585dcb55c48e178ccfdf280 -MISC ChangeLog-2015 3617 SHA256 4906aebc632437f3496134b71394c1a105671779473f8d7d47be4992fcf6ae2f SHA512 e0ce33a4a9d7da21c498efb543aca316aaa9905e5b7cfc77a11cee41ee9875a102e51acb0f6d2024beee30e24a7a52acb53c61c21ec5f801142a9404ec20bff2 WHIRLPOOL a09962f8af5e6902b54ea42e76ba79faf21b6bd97ebf6dd380732bf7723531144a27077bcf1887b659e9248bd78d761cc96010f7773e2a62ab02ad67e563e54c -MISC metadata.xml 261 SHA256 15c95fe0beb2b86b616b7ac1be6f1118bd598d907b441a94d87721c0d6f36855 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a WHIRLPOOL c00a986f98ceb4fa20ffdb0c411de9841218f8af6f7499a20a34258db4cd74cead97ef2ee18ac8cac7eae7db3c95084cbf8aa3a36f95a1ed7efbb0e088eb50c8 +EBUILD qrna-2.0.3c-r2.ebuild 1112 BLAKE2B 4a72757056575d7aa9036fa21158393f6eede3c0e1965ab59c04704c725ba10dd037776d6e3c353a9942b1cbd464da182c375289ee6d45a3d5d74fc40d85958b SHA512 70e7e97f322970434fc5ee5abd8b75ae085fb588ea467673e01ede4b4778e819e41df83f9df1fc1d10e6ede9b52d5356519f8c4987d654f4038fbd7c5c90e853 +MISC metadata.xml 261 BLAKE2B 3768c926bca545090342a947ba83e706a8954c51b99a5e7b3476ba5198cd326fe1c3b8efb51dfd6be1800682556b8ceea065e388981463ab32f3d687951872f3 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a diff --git a/sci-biology/raxml/Manifest b/sci-biology/raxml/Manifest index 4b6ea77c10ad..bc3b205693e5 100644 --- a/sci-biology/raxml/Manifest +++ b/sci-biology/raxml/Manifest @@ -1,6 +1,4 @@ -AUX raxml-7.2.6-makefile.patch 777 SHA256 0e87b5cd6375669e660ef6e3c37e51e751ea8846de6c52060f484380c28610d5 SHA512 0cc326e8fed0882c56193fef9d1c98577f2252acc4dc25e650e0806d89ded0e2911e6967272a6d101cf830cfe63a190a8f5220fd7573864f5fa60106069ad74f WHIRLPOOL 896bb8f27d458e1d555ffb462abf89f55c487e595a604b3446c579a2e95719cfdfb1911873ca2570a73c3299ef49f0c489ee0c127fcb6e1acdcf907c748459b0 +AUX raxml-7.2.6-makefile.patch 777 BLAKE2B 294eff4ddc4046a4e29974c6f4850d040c9a7c4907415913da209b7f71eee336dfa439d446f67284b4eaabb413905012c867e38a2b44653e7f8b618537108a13 SHA512 0cc326e8fed0882c56193fef9d1c98577f2252acc4dc25e650e0806d89ded0e2911e6967272a6d101cf830cfe63a190a8f5220fd7573864f5fa60106069ad74f DIST RAxML-7.2.6.tar.bz2 202803 SHA256 d45bcbe45e3ed5f8d6ba3c99b9da9b202c72a9fb196a9d32d2961ee4cb791868 SHA512 b0027a7e583e6471a774d9e784a0be1ff63b3824a8cfbebca68bf9e414adab297206ea2d43c9b97456e6acc0a6a15f55ca33983381dd6150f9e7ea71ddecdcd3 WHIRLPOOL 7fe7ac66412c979d3ecca17e2c06a32566fefe7bdcf39664a0885fcdebc2b8187c222ca5e29cf2685085fba21a8aff0a2aefceec08823cab155a5f62f8b59490 -EBUILD raxml-7.2.6.ebuild 962 SHA256 e23a9d95f88de3f012243d97a65d77cd7ab833933434461293b1622b68805315 SHA512 dd75e9c82ef3a3d2c3c2813690af6ac95548842e727c7819b63054d7e982b4ea7ebfd9020c4ee7b9f80bd0b38162c5559e25a19bf5a60efd2d63e3798fae243b WHIRLPOOL 9ed05cccb01a217e74781d86fd26feebb79ea1dd5045af85c244ffe88e4b788db7703af0fb0921f3613788383138aa0c89ee246dcc2f3ac0517273c553ea3ab3 -MISC ChangeLog 2496 SHA256 3ff7f51068eae5a3ee5aac56ba24c804e27f6532686a11dc4e12dad54105ca39 SHA512 4ae95033b82f5bbbbb89759053c076181d590a50c80f94d09d4854ddbad7c8f35b56b80fc983865fdfdac7c994b54c141b973d1547c32c75f01bfe8c59aa2628 WHIRLPOOL 8b8cd0213bb17cb2c19dfeb5e3dcc76cc9d7fe9fb1be88e6553b7f209de125d18cd7e846c6b751f56b738dfd5d32bfab42d3aceafa08d13f5863c96c91d4c065 -MISC ChangeLog-2015 1843 SHA256 8e1b22930f67ae96d7d4600fcd18797548ef8fe68ac0b4a652691878517897dc SHA512 40d0f7f536b7d7fb6395fdfd443f2e960b42923145d281c5198f3dd86f3fe5afb4eb85f044be8c3222e1728ff691cb34a2684fd7b3c78f36dec0056ded4c5797 WHIRLPOOL dab6051c307797ea0d57bd74d468ef98630070c8c2b51c221437cbf568c8018abc1b567d72fc27c22c7496e8a6e419c9edd5fef7af5009374619fa5068f6c875 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD raxml-7.2.6.ebuild 962 BLAKE2B d9ab298e6e8ac66ed9f2274fed8ed2b1f87d66a5532af63402bc7d4b14e8b50e558697ddb3a5654451c19f20a588962140d7cd073825794df6fed4cc5bf9179b SHA512 dd75e9c82ef3a3d2c3c2813690af6ac95548842e727c7819b63054d7e982b4ea7ebfd9020c4ee7b9f80bd0b38162c5559e25a19bf5a60efd2d63e3798fae243b +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest index a31328ae87d6..298a633134eb 100644 --- a/sci-biology/rebase/Manifest +++ b/sci-biology/rebase/Manifest @@ -2,10 +2,8 @@ DIST rebase-1701.tar.xz 120604368 SHA256 cc8cf90f874dcb179b9f7654780ff783066fa6a DIST rebase-1702.tar.xz 117583312 SHA256 f010388af45a58c9f40270240c65fd5a82a1fce27b1f1eb0d1fbe4b3ffd20966 SHA512 3bba0738840b966a0a58123f265de1951428c599f3af9c581e1becec17ba3a93233a231de0673dbb2dc0bb82d54096e0eed43846967bf232f412bb785ce3b23f WHIRLPOOL 70aeede45b1795fc8cc634675381d4458b32445016139d17ac5b9951cf2ff54bbc0fa50d91bf49bbed19d250553275e3c1b15cf0de5149e36d3e1567c74031ec DIST rebase-1703.tar.xz 122252304 SHA256 dbd5fa2751b693b1babcef9c69a6f7a9e539550aeea712c569dcc0f9a93998e3 SHA512 838bf5e09073ff8520403d955a8195298def1d792d1fd3044e7c8896c6202a0340c1e96dbe80e85c5801cd3be3ed63f19488101cca02d46cdf5f1d0521ede796 WHIRLPOOL b42693781f5faa8a2dbd15204d8f1fc2dc08fb233fa536bd3c0405799059b830c8be214d34f54e2645c8c20e7bd1359882167d175a5026a8acbea29b4f00208c DIST rebase-1704.tar.xz 124351900 SHA256 0622cf14241a4d0d725cb149378d5b2a5aa6094968afcf3f70b8025fba1cfd6b SHA512 0e4019d41ccbae86b8cb1f6dfa4c34d3fccbe084a330f04f2fdb774186e35c761655e1619d9a90d444ea3bab0910df1b60cf9a249ee31d66a254d28dd6b32cc7 WHIRLPOOL 161f04c90c1eb290625ff0ee202f78c2b1fb9c60ac5874ca11568927e4f7ea23c6a9fed42a509b1350d0b267ecb8ffa06fa4f1d38e4da0aba28ad540ea749c6c -EBUILD rebase-1701.ebuild 1052 SHA256 272c0536c5a330de50d3be55553dc0a45adb2ad3c5d7b8c7dad3ff0c9a01e295 SHA512 f5ebc17df3c888caebc01f66e813f0482279bfa89bf5ae67ebf67fc3ca6e762246cd40b35d6713510850a63e7322916b9dd8fb88c841b82c7a1734a562df494b WHIRLPOOL f3c738c2d896c4f628c0c620da5e3d2a41a4b1cafd62a0d7f0fca90de57c505112a949f7ace0e2da7ae892708993cdfb7cbd44d5d1f07cb8247ac2ff1893d295 -EBUILD rebase-1702.ebuild 1091 SHA256 a90c8a84aa2fb0d07dd0eac72ee723468ec0cfabf50e9d035f9db32fc661e57f SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf WHIRLPOOL 3033c3eaae0d96afe63f1be60fbb3cfd588ca4e05b96355f9b561032c9f5b1d08b99029de5d409ce372560e6addbb8182279c963bfa865f18ee5b32f06b00ace -EBUILD rebase-1703.ebuild 1091 SHA256 a90c8a84aa2fb0d07dd0eac72ee723468ec0cfabf50e9d035f9db32fc661e57f SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf WHIRLPOOL 3033c3eaae0d96afe63f1be60fbb3cfd588ca4e05b96355f9b561032c9f5b1d08b99029de5d409ce372560e6addbb8182279c963bfa865f18ee5b32f06b00ace -EBUILD rebase-1704.ebuild 1091 SHA256 a90c8a84aa2fb0d07dd0eac72ee723468ec0cfabf50e9d035f9db32fc661e57f SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf WHIRLPOOL 3033c3eaae0d96afe63f1be60fbb3cfd588ca4e05b96355f9b561032c9f5b1d08b99029de5d409ce372560e6addbb8182279c963bfa865f18ee5b32f06b00ace -MISC ChangeLog 6596 SHA256 92fb45bcb60479323913c1996d172eb43a5547d0fd9fd43e89dce08f519c4375 SHA512 66e57f9259ac4e70d5685fbf4b5492a7675c74636982120ac80233b2a20a69e6b7f190c1d6146b9b9c47078753723f84c15b256d015133fdacb26d11d57e56b9 WHIRLPOOL 12278589cdf99a99fe9e398db319bb61a316bfc7bbbb060f408e41e58a00cee012ccde3882f4f83bf799e15164911354cc0ab2965f949fbd82b9d6d0ac6e6451 -MISC ChangeLog-2015 21128 SHA256 b6ff29b80d2a0354cf85684f4fca7b0af1342cc26abd14d3662e407f06032dfa SHA512 6ad5513f3e6003749004d4f7e461b3aa5917d0d448016709d67ae918ccb07f0e03dafb8c916d525ec63f0d25fcfca659565ace4031ce7b2c8165ffc3cffb54ec WHIRLPOOL f6264e3f8ec023a70532e28820cfdd3ec877cdbbefb6fb6f67ea0953b4cf90162aa7629d145917173578920e51e2b91f42b1b23d8e8b7db8142ff1c083ba6f74 -MISC metadata.xml 914 SHA256 4969698e54e50dcb212db1f62d54339fcdaf4cd94446ad0b2b252b24e1efe1e8 SHA512 86e14836fdc2e5bbc4185e8294d471555b076701041e867d0261b15c3495b131d205e8b2dafd56b96594ea2d6c0103160958e47c9c0db340a1779c8b57a696c3 WHIRLPOOL 2df25bed339494073affa6e4cdc7fccf1f69769518f364c6607c730c788cd0cec93b8a55d00e0400e6ce8614177e0204ed2203829bbee5bd9857e4386e17b257 +EBUILD rebase-1701.ebuild 1052 BLAKE2B da1b6a61d2ed830a9421862c5539a3cfd0a438c3068c2a00af55fba5f7b5d4c1a3ac9bb9c4d7fc8b3552b9c6cdb7651479c70fc81136ba02d1bee73693e53f8b SHA512 f5ebc17df3c888caebc01f66e813f0482279bfa89bf5ae67ebf67fc3ca6e762246cd40b35d6713510850a63e7322916b9dd8fb88c841b82c7a1734a562df494b +EBUILD rebase-1702.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf +EBUILD rebase-1703.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf +EBUILD rebase-1704.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf +MISC metadata.xml 907 BLAKE2B 87023eda8004c64dbd6ec605dcc7cff07f247f5cbf140ee65932c1e80ace99be4f43f2e529b9569a0220e2e60e03e88ef323af1c0dbbbdbee5da0eb0e46ba5f2 SHA512 dfbf6a8c60f75b92b056f6dc5b74adfc588ab0b1edb48ba15a6516254a58b736f101036d8061ed2abd69ca202356f6653bdd578f1a94ae54e5f6df6cc2e5155f diff --git a/sci-biology/rebase/metadata.xml b/sci-biology/rebase/metadata.xml index 1d08046a6655..dbd090188c93 100644 --- a/sci-biology/rebase/metadata.xml +++ b/sci-biology/rebase/metadata.xml @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription> The Restriction Enzyme data BASE is a collection of information about restriction enzymes and related proteins. It is maintained by New England Biolabs. It contains published and unpublished references, diff --git a/sci-biology/recon/Manifest b/sci-biology/recon/Manifest index f560e8f0a55f..fac948adffcb 100644 --- a/sci-biology/recon/Manifest +++ b/sci-biology/recon/Manifest @@ -1,7 +1,5 @@ -AUX recon-1.08-buffer-overflow.patch 290 SHA256 da8bfcd418482f8529c9709ece7136939404a2436440729ccff0481246aa97cc SHA512 d903e6a8e4b61e5f91a318313203890242aa9badbf6af69009b5a3ef6351ba6984e00cdaa7aaf744095fd79557c1a5ad96a80119248cddfde9874f4b763df11b WHIRLPOOL 7889625a0d829a877e1cbde608459ab73773bbc91d26d0daf8fd835ae4611f433df9c77bd30d5fa004ef589d2b0cac2fc4797292c5a16174223d7ec4e1cd708c -AUX recon-1.08-perl-shebangs.patch 420 SHA256 2a7cfab0cf60bf2aeba4b8f93732cbece2570c5fc035a288566692daf4a94467 SHA512 b681a0f911268ab39bc64cc35f4647a71696f3cbc4610f6fb7c061ca70406934ca2f85525578c28530431725ae9399c327a7551eb19dd46552ce5e65b2399a88 WHIRLPOOL cd2e803be5cdefbb7d340970926dee446714f687d84aca95b21c7099104ffaa45d9adcd314137ceefdec2f4621026ea41ff99156f6c8a8c78953f22f0066f6f5 +AUX recon-1.08-buffer-overflow.patch 290 BLAKE2B 3fb3bf31f7975d9c0610e53d56b6e232dcd123df57f1f7fb19efdc260b1fa0e3619eb582650b8cb84cf0e1a855b5192015400b7672cfcbd23b5c34d1ba8bcadb SHA512 d903e6a8e4b61e5f91a318313203890242aa9badbf6af69009b5a3ef6351ba6984e00cdaa7aaf744095fd79557c1a5ad96a80119248cddfde9874f4b763df11b +AUX recon-1.08-perl-shebangs.patch 420 BLAKE2B 7ff36e0d6fcd96d7345167880e82ab325f4ab09bdfc37bac2f8949158abf48eba9e8fb64976322d3a3056d50e5c3900bf885049662db1375cd3c2cb9e6b10f47 SHA512 b681a0f911268ab39bc64cc35f4647a71696f3cbc4610f6fb7c061ca70406934ca2f85525578c28530431725ae9399c327a7551eb19dd46552ce5e65b2399a88 DIST RECON-1.08.tar.gz 108477 SHA256 699765fa49d18dbfac9f7a82ecd054464b468cb7521abe9c2bd8caccf08ee7d8 SHA512 68672312f31751fa93250bbe337ae57f11dc4b1994c7dd5249dca916012c2df83a03c925cb631709e081c72055ef5bffd0846bc252d8c3c6247ae5ef61b160c9 WHIRLPOOL e9a60353e4f6bbe37883c648a7c8f5d363c780d03a681dd2d6803d2e65a1eb5f9b8fb02a85721636e7a792b53628a00f21d57d1c4066fb8b91b2fb1d4c383763 -EBUILD recon-1.08.ebuild 964 SHA256 f09185a1705fcbec9fa3d809b9aa197ed173ba271f718ad87549f71c30dab7d1 SHA512 39805629341d019e769ff796f9ef12aedaadcc431904a6bd0b6e48b145a3631a1f7ebbccdff6fc23cdaf75e55ee909ea5fc7969b35082fcec0b963e48baf3215 WHIRLPOOL d9cc8f9f8ebca84915f3a2846121794fcf04c18f28f34fc8e8d0bef49e3c914ded6e00d031da8c4a316b5d130157243ead45164001d2060660c3f5a83947a41c -MISC ChangeLog 2550 SHA256 af2f31194d3b60bf6f4a501218b9e2d8fc117ab587c47a381a5a4d569743394f SHA512 1a50787fb16133e861edac99632d9b24b42b0a8772fe4bbc8cb96ecbbf30864fa1dfacc3ac0af0902e87d8fe2a5a03b53e43f37f9dca4d4989aa547cea48dc8b WHIRLPOOL 13899a0089c87e97e76ca04466451cc90d5eaf23d71156e204123140592e80eb6d80a2b86f568ba8ea203febde4c79502c2f8dea9b49629bc2efb2fe7da12110 -MISC ChangeLog-2015 921 SHA256 681e41db69008ab6d9e89f99e5fd69990aa4c1d3010fceea4174e4d4848dc87b SHA512 8bade18c4824f46d75759628b9cbc0f4e1f23d411416cd4475761173200282ae140b856c9743710d61a7c85897ca6e01ef0000a2de1724c9440af27423284ca3 WHIRLPOOL bb6bfd318652806a56d15632c37ed235b81882d9b4e74df24af59a195de8b53ec99d2dbb62496287cd4ebf1c1a2e43d34d3d6ada9a97e772fa70c4b597fd594c -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD recon-1.08.ebuild 964 BLAKE2B 19ef960784329b03bdcb1d2eb46223b40bfb6dc8e617b06ae526b0690ae6d6ea444e9db1d6c466c1a3f62db0e773de349d4c338a0c9e9182d2803342b35fc6a9 SHA512 39805629341d019e769ff796f9ef12aedaadcc431904a6bd0b6e48b145a3631a1f7ebbccdff6fc23cdaf75e55ee909ea5fc7969b35082fcec0b963e48baf3215 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/repeatmasker-libraries/Manifest b/sci-biology/repeatmasker-libraries/Manifest index 7b67032b7acb..55328cbe57b4 100644 --- a/sci-biology/repeatmasker-libraries/Manifest +++ b/sci-biology/repeatmasker-libraries/Manifest @@ -1,5 +1,3 @@ DIST repeatmaskerlibraries-20120418.tar.gz 28059668 SHA256 7bd44a70ee33ef60ab829b4cb84a2a82a6fa923e2992071f374b7a473e4dac62 SHA512 254d47faeee72ee62e6854ebc389578691d66e99d9d5e2a0c2462bf752ac5b4d2171c9e6b45d4f87f548a96b62753bb9c37c2d2c00e06544e91dd09fe2bbfe32 WHIRLPOOL 1da932f84c591221c61177116d734d00c36c52d588bcdab73ed63e8128b9c90a63f855bf4e8e603167e059f98465460b5b2e7e00e4a724bec230d27b1b32a31a -EBUILD repeatmasker-libraries-20120418.ebuild 760 SHA256 27ca39b3dcc1fb89d56f3a4c9a05bb66876b98bb5b28a182c54d876cd5459854 SHA512 ceb9b66624d509e9c6f3750d7a51d707e7b626dc3c15fe09d84be632f68ca8d0bcbde25b9b5dde4919af2449ea25877931f751f5934e2fbe7f1db0b394ef5cc0 WHIRLPOOL 2b65a5c6a1e4303f4f30c9f2d29eff89f1c8a0cf233115c086fb04d81cf445928e4028368d3fd68161be1fe9bd65b5755bd907bda3f72c01e253322926175d8e -MISC ChangeLog 2481 SHA256 b87a2e9a00d4e02437bfff7c5e86b51278d753bf4c75710f8d81c62bca4714a3 SHA512 a9612047931160f56d157ac79b7c15556b9a05d94071a4a1d1eba23241f5917db5d6b6cb7cad650f0c1b7fcc5ec40a8c62147b64bc6e43632f35888e03d4540a WHIRLPOOL 132ee237394ec4fb86f82d61e8091fe8bec9d692678b142b64c27ef0dd0b649dbd2672e0dcb46ed7a592535c94eb4df40a38606b8405d15c35d00deca30432ac -MISC ChangeLog-2015 1565 SHA256 15344cdd31c1b4e3b5046eb9b571678951a16ab6f0db183423458ca250ca1c93 SHA512 6727327c9698d7cd7ef9ea3dc047603112e94fe0b0108226108c4ff4aa2b09e573ff80eb44d2f4897b69fce4dca008e59e8e04bd2164a4cbbf55292471ba1608 WHIRLPOOL e4fe66878655ac8601f03c9c9cf7b60ef643e4ba50b19618013a8b57782d5b71ba518ec953c6e2edd57858fcdce13f2d2d2215f43f40a159f73d9bc2f8cc674d -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD repeatmasker-libraries-20120418.ebuild 760 BLAKE2B 3e4019a480811b8cfd18a5bb822e3f7061b8c49a3361f1db2bc2b8f9c7e610442a3924a0ddea1b7cefe55353dca39edd433cfda0feaa32da5416805ddc7d8b65 SHA512 ceb9b66624d509e9c6f3750d7a51d707e7b626dc3c15fe09d84be632f68ca8d0bcbde25b9b5dde4919af2449ea25877931f751f5934e2fbe7f1db0b394ef5cc0 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/repeatmasker/Manifest b/sci-biology/repeatmasker/Manifest index fdf427105995..b781e7a20f33 100644 --- a/sci-biology/repeatmasker/Manifest +++ b/sci-biology/repeatmasker/Manifest @@ -1,5 +1,3 @@ DIST RepeatMasker-open-4-0-1.tar.gz 84077910 SHA256 638ed02d970052ecb7dac6c71d2cb9625b0a0713df88d46ae78865aa4fd3fc92 SHA512 6b710a02b2964bca6acb25cc918bd56f7caba7b80b3b683972f0584180bf0fd3704f657d7ee341187a4ac86d9883e62eb4f09da237fa8ef1b481137d1a89963e WHIRLPOOL f2d67ea6e97a0667ac9ce89f8ed8c590b911d9cd4fc4482bdc48c0ea7ca07161a8bec267ed3e2a950f6d8c501f992ceadc62e1211a80b6bc1c90d293cbf45e77 -EBUILD repeatmasker-4.0.1.ebuild 1529 SHA256 ded0d2097778ef62511a10fec641188fd7591271abdf5fbd8a5f1da8219ffc19 SHA512 72c2663f3c614e476f23d880551c6f78fcc239c56905726c90663a467af22ad42cb4518667c2a1301f55230d890b390967a5799bb4460c4d0e9909bc2d5c5bd3 WHIRLPOOL a597c4108a5c1d773ebe0914b13b1d04e0a7e1f0bcc8cf31a1996f8adc64ee0858e5d698eee0adc6f46aa179f9749bf49aedbcbec0496b863f435208e1da6ad0 -MISC ChangeLog 2445 SHA256 88f77fb918a8ae5f0f65d30235ca572fa6fb2e2168aa01c7691073c0ac8ced3c SHA512 e5d989a78a952dc80d8a991f2399c96006aa408d314fa48a3bacbbbd922e7a252d8b825ad06d56e093eb5324350886eb14e911ac36a3ddc14b0ab7184a0768dc WHIRLPOOL c892bcb7d4765b501c11cc61363a39e59670ced8c121c148f84b46118c7608dda4f99eaf891945ed21f454daee7718917aa244edfe32e2aeda2b3253fd17c891 -MISC ChangeLog-2015 1664 SHA256 34f3c51d3517b7dc7cb6482ca766bd2b1cf6f1037b24ccba8fe19f07219e0f60 SHA512 583ea65bfc2ac3b5016af35025b298fbc0a526585beaa5c33730459429b760af13afb3e72313c1902cd00f60f41be3f545dadf1c6a5d38da41bdb23d6096a68e WHIRLPOOL a60e3053b51f4eb83178fbb4b4c494771fa429317296c8d755b8182e22624108fff3a221fc8ee99965d6bd8df8366b0819d7886ea0c3aa3eb5c8138556d6d705 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD repeatmasker-4.0.1.ebuild 1529 BLAKE2B 3cf4337be1db71be2a69f3455ae5d6c7ced9fb213f1020ef633ce97b9c7a63378229fe87cf5f7e1698c52d3d478cc6e480683ed0391278e09cb5d27631772591 SHA512 72c2663f3c614e476f23d880551c6f78fcc239c56905726c90663a467af22ad42cb4518667c2a1301f55230d890b390967a5799bb4460c4d0e9909bc2d5c5bd3 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/rmblast/Manifest b/sci-biology/rmblast/Manifest index 7895e6dfa8fd..46de8283053e 100644 --- a/sci-biology/rmblast/Manifest +++ b/sci-biology/rmblast/Manifest @@ -1,6 +1,4 @@ -AUX rmblast-1.2-gcc47.patch 31795 SHA256 f68cee00a42ab19612430cd19c6c26fd5b4f1bea78710577e3e18b8ace82896d SHA512 2db82b02b157dd39c21d1fc459c4837741088d0d764c994094096c15ce76331f33f68e7e8498f7ea43e4979cde2fd248baf0687ac08b147d1060b54ac55b83d0 WHIRLPOOL 5a258a4f3aa66afb24faa4b2708c13e478710059757ec1a63a90c23f15b003a6366477a30349f87841f31c3131a3ef3a4de17c1df27a54da639f915efbda55fe +AUX rmblast-1.2-gcc47.patch 31795 BLAKE2B 65a82f097c25d9619c93c8b6f0b95bbb73cd981843201342cc34ce2eb6909844cd2a3463e324f11b61a7e4a855343787c9c320fdfdbdf78f1d3e55ce3e2b89b3 SHA512 2db82b02b157dd39c21d1fc459c4837741088d0d764c994094096c15ce76331f33f68e7e8498f7ea43e4979cde2fd248baf0687ac08b147d1060b54ac55b83d0 DIST rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz 10744076 SHA256 996be9886189364fff8ed39d4668122b2e5b8b010be47d929602416d95628eef SHA512 e7c2ebd114aee045ea3f3f462cf2658440e13a2d1eb777648386e1c5eeda9f8083af383c019f9b5802d935d6eb2367eef20822afc45233ddb44a426b4dd7ddb6 WHIRLPOOL aa3ada4297812a97614b0fe218de65d7474edfb5910e156eb09b625d45338a97b35f46876f5edf6105ead8b321a28f55ed7de2ad251bbc48ffd0cfa65ee2ac7a -EBUILD rmblast-1.2-r1.ebuild 1137 SHA256 bb0f98ca5b8018ce64d0accc5e3159318e1a509779697e9d3737d33809c0e4d2 SHA512 9b624dd651e7f8988e4ae605a737c2baaa55681e30af93627b3824004d487bc94d6a389368e465c1fa74d2783342b10a41ac8c8aabee3691099e115f62c682f6 WHIRLPOOL 122872531a394837d3ef0f90d3f6388b3bbf9c9091586c090e20b3dd384e9006e8e106d6fd132f05a284cde84e6217476b0bc9cf791c04f8a293ff47e6bd278d -MISC ChangeLog 2588 SHA256 d3533f22c01b6606101f4d4f3a16121e4600a9559a1eacb732f067e53060fb6f SHA512 d9e22ee0f79e5d54f587623811f057cffed1cd7e54b2da80be7a1dbaf6551fd6541b3f662ff1de6d11c5e64e7d2a5d97e413cbc6ec48585d1c0763124a05ed5b WHIRLPOOL 463d25b60b3b38640f18a06210c2433a3c656a78170151d19edcfe4cc0536ad01999037b2d5ed6c2fe19dba66abb84e37ba49d63dfa1620bf94fce9e6cf0dbe3 -MISC ChangeLog-2015 1184 SHA256 b0427be081124505e7b0890ae979922d5c0578eff983181ee3886850b3e6f731 SHA512 48c3c1f186306117ef9a171977984c46d9059347d5a7d481e6e610dc5f2631022d3cedcd703805dbadf00352c4847a50aa52168b8cd510ec047ef8530814a6ab WHIRLPOOL f7c3dd1fe2a4c6bfad72f7fd87b956dde73012bb3c769a9bd44f4ba8a8e873f4d27abfd72f1ce9a4f255fcd211ff85fa0ca61dc093cde5ce7ebcfe85b57a5c6f -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD rmblast-1.2-r1.ebuild 1137 BLAKE2B 201c0a80c735587a4ce53d7af48292bddbb1400d3f710224ebc111bc626220b42e2435207725076183d313c2c385627e176de0d056a5c446e3dbd2a4d16773ad SHA512 9b624dd651e7f8988e4ae605a737c2baaa55681e30af93627b3824004d487bc94d6a389368e465c1fa74d2783342b10a41ac8c8aabee3691099e115f62c682f6 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/rnaview/Manifest b/sci-biology/rnaview/Manifest index c891931aaa3e..30e6f5b2d130 100644 --- a/sci-biology/rnaview/Manifest +++ b/sci-biology/rnaview/Manifest @@ -1,7 +1,5 @@ -AUX rnaview-20040713-implicit.patch 347 SHA256 129554c5ae9ed20c2cd24759b1007669c5f5ad19ddb76698c2b9157fcf79fb97 SHA512 698369b7640a36c26970649a8e0fd240c3177b3a3f7d9b8059fb6c294c39ad61389ba8a6eb3d465c3a999981fff47e2aa175ea52b38068145e2941c5934c4a0b WHIRLPOOL 5dcec3fe99bfd1efa66ecdfc55f6c553700421b0de833361fc7af3fa2654b3dd78e180d215ef1f880c1c059cad402a5ea478db23f6ee550f599ae32f5f008f43 -AUX rnaview-20040713-makefile.patch 2131 SHA256 dc2324a361132df317683a3a9d835364a7e3cff73f953920a97ca53bfc951c1a SHA512 9cde6186c0865405546bbee68ec64bd11cdfe91747b90739b237368b2724763ac4dd9206defec7f00a918449fc2a8451c3a5e447cfddfb7ca5c5fed00bb29de6 WHIRLPOOL 5f0d15d5df23d759448b763ec9c204a86658a852040c6b9e60f3dc07b37d45073c82e8ab83d0da7e2abc6bdf483b6d1258401ff0d730d24809941072aa5eba17 +AUX rnaview-20040713-implicit.patch 347 BLAKE2B fc12a2d06bfdb88889e3b2af1b207b1e46b2733074b6a6ea31a98759cedd63e55cea50ae5a9f31d91a251791a3a48ceb387c8def4531d7fefd2757d4b671b0dc SHA512 698369b7640a36c26970649a8e0fd240c3177b3a3f7d9b8059fb6c294c39ad61389ba8a6eb3d465c3a999981fff47e2aa175ea52b38068145e2941c5934c4a0b +AUX rnaview-20040713-makefile.patch 2131 BLAKE2B 502f4eaf2f0f4a82b6a85ad17804d2f2a675e3d28873cb13873aa9cb450e29c51f44685e9c20dda0525a7ea2aab4005f0e5dfce919c03c47ea3489fb981a88ac SHA512 9cde6186c0865405546bbee68ec64bd11cdfe91747b90739b237368b2724763ac4dd9206defec7f00a918449fc2a8451c3a5e447cfddfb7ca5c5fed00bb29de6 DIST rnaview-20040713.tar.bz2 433916 SHA256 0961779c83e247a4b04c02d90d3850e8c4c889b630194ea1516cbeb6c6dbad17 SHA512 c63bb728bad0f358ab36f4ca18f4f9ef046811f21d3b8f3c6fdd3e6e6fcb367a9a52710476c5daea001f8f3262f72b64f0c0546f0c1423f463f2e0d288809e8e WHIRLPOOL 7ae8953a8028da0eb525a6b33964267b15721dbe148f5077cf2c7e47c7cc2e3a47616bcc944e7f8180c0696c27ac16c53bd3847d02db5a575df3cebba29dd169 -EBUILD rnaview-20040713-r4.ebuild 657 SHA256 0fd743ab75e230858ec718a38fc78ee0546ab9efee8c4777763f78cbdc1c865f SHA512 20ed56130c1a2cdd18cfc0717cdaca75030bdc2315343b390d0f01aa7ee9fc760734c9ec692bbe13c0930007dd47bfefea13b0d0c205bf1ee6850221e8df96c8 WHIRLPOOL fec4dc68525793ff6e6e4e23e5f488d72b42e0d628ead54acfbf6c525c46e9dba7185f222b488ddebc5ff9f0205948699019cd5b84f228f35e9210e334ffd5ba -MISC ChangeLog 2650 SHA256 70228c3d62c3eaa2af2bf408e233ec0e400da428c470cd3a596063289799dd19 SHA512 364ec65547eb21057e712b6a5eaa65ab6f1c43d6f74dd828ce4ed1306b2359302aaf2e757970865dd64944f3db941786d2cd30fbc8987ab33be71126a985af47 WHIRLPOOL 7257821dd89f1dc2f4cdbc0b4c3e3dd4b48e870ad3d086089d9be88477f026fe95a2758b32996525a9f28451c863dc757150f715999474660ff9c77031b03cbe -MISC ChangeLog-2015 2098 SHA256 2357f106dbfddb6705444747a5f16ae3dc5209853222057da45aa8312b70a99e SHA512 5ad5c09bf14cfefa9281b88db3ea8b23365c36bc4574ef309f3745b7ca560302e8b3f98ab201ed940c123fbd1968507208b8d6655d85c4fa937518aab1404d06 WHIRLPOOL 8f795a1decab226ce65affc5234c79852bc979580dddbdc116e41182f59a8aba0231c7bea737b3d089f4db5b6eb2aa6e87128bda6daabe97df711540b9044f06 -MISC metadata.xml 666 SHA256 1449cb6570fdd20b89395441b6f7b9482202827474ba53a2a602378ac9c58a99 SHA512 70614f391a69e8f2b21d1b3a277d7693436fb8d2089e390b61a1d71ecacdadf2818f7d255a083dcb4c585df90817c5e9d129e38f365635197d74e81e84c33786 WHIRLPOOL aba4dc0921474d53184fa09237bf1ba240b50a60c65324254f112ef264b8032e939f39d1d2f849b25f6c88a1449571b171aecf20c245ea55fcd08409a3a3a7ad +EBUILD rnaview-20040713-r4.ebuild 657 BLAKE2B d840990168b0e5583ca730daadbbf3ad77b9e3fba023388c508edd65f48d883c7c904840f75f070f9b004b7e08e80f4a17a7c02b261c8cc1febf43bca399b10c SHA512 20ed56130c1a2cdd18cfc0717cdaca75030bdc2315343b390d0f01aa7ee9fc760734c9ec692bbe13c0930007dd47bfefea13b0d0c205bf1ee6850221e8df96c8 +MISC metadata.xml 666 BLAKE2B f12db8362c75b6d88c844fa15f7617656ffd3d1ae3020b84eb04b17062efd1a664befb9e664cdb49c6c07f01a678a72c000c8e0077fc964939d467f7e0838aed SHA512 70614f391a69e8f2b21d1b3a277d7693436fb8d2089e390b61a1d71ecacdadf2818f7d255a083dcb4c585df90817c5e9d129e38f365635197d74e81e84c33786 diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest index ff022d6fcf34..c56f5ab39b68 100644 --- a/sci-biology/samtools/Manifest +++ b/sci-biology/samtools/Manifest @@ -1,9 +1,7 @@ -AUX samtools-0.1.20-buildsystem.patch 6737 SHA256 3ea8caadb8df363b5c4b21f0d6205cc5ade79bbab13070483fad5d5145323bea SHA512 ecb05971fbea4570ec161a165cb581b38ed727bb7e5b769862984bf035414cd564ab809882dc3272f8b192feeb86e29247d7327afa73ff668b01c03c58bb177d WHIRLPOOL 469588de06a4dc81c2d2b15d7502a2419af6b42561be5935792ec13d2938e141c7fb7f2fd0d8361975157db613964ebacca9f0129ca57204a51bd09e5a82f12e -AUX samtools-1.5-buildsystem.patch 18442 SHA256 a7784c89cc06da00fa3f8470402a65a0298ef64edcb94d83694cde3cd04c16c4 SHA512 2405c9c5bd2892756dd70147d0bc57f11f869ac2b6bb12d4350e3f7145727a4c8a602489bca5dbcbe8131d52572d4573e8507a2b989ac0ac86aa8dfef92e58d4 WHIRLPOOL 54afdce038497f040e99ab6690142d9245ddb634bb11abf5f84b78d8297884d30be7073efdb09a2fc9d304a5f48ae3fe31518d171eaea16c668b7a5fce625ec8 +AUX samtools-0.1.20-buildsystem.patch 6737 BLAKE2B 71445f57735903bccc2720a32f42b27093f670e383d2d194b5692b1ba536e3df44204711cf4574b3933e5ce00605b661b1a36d79ca7f193ce36816271a3f8214 SHA512 ecb05971fbea4570ec161a165cb581b38ed727bb7e5b769862984bf035414cd564ab809882dc3272f8b192feeb86e29247d7327afa73ff668b01c03c58bb177d +AUX samtools-1.5-buildsystem.patch 18442 BLAKE2B df389fd2eb6cfa4fafc987eb8e2e1e5d050a9373305f752516c77f415619f5c5b7ff8e2f8c8fd04769c269f9d385f0130443311d9468a591a4531a9e3127725f SHA512 2405c9c5bd2892756dd70147d0bc57f11f869ac2b6bb12d4350e3f7145727a4c8a602489bca5dbcbe8131d52572d4573e8507a2b989ac0ac86aa8dfef92e58d4 DIST samtools-0.1.20.tar.gz 566387 SHA256 500019b4d1886ad995513d5ce8b413b14b51f16f251ce76bc0b35a446b182a47 SHA512 15bd8cf401d14c1ab4faa591b6054f5ea9731c4e966f37f71d33d9081a270cfeb91e8a3d80c631e0725b49da81387f824c206e8c21553ad554d0cfc5c238a6e5 WHIRLPOOL 3ea05df172ea6afe31bd3880f918e0b286f65839f78ed846a0d3aef84ec70df1e3741ff6dcad5f70d62a06687f07b35609829aabd33c6688fac0d59effd979e0 DIST samtools-1.5.tar.bz2 4190142 SHA256 8542da26832ee08c1978713f5f6188ff750635b50d8ab126a0c7bb2ac1ae2df6 SHA512 ff3e39ba867ecbd88f3363b038508c1557e349ea4223483f8f4ecb17ff8864fb53cd193bc2059a147e30f07395bbf53c8518d0f70219e454375c8bffe56e3059 WHIRLPOOL 1a88c9617857f1f6d146df179aef5b5c6bb83de8c9d127c405e5756842ced84c194a3f09f69a4757a8adf6ca623c9fdc972f4bf609649d3e991dda8f616e3582 -EBUILD samtools-0.1.20-r3.ebuild 2363 SHA256 7aad766c195ec2ffce65fc9d85664125699cb632b0e6f45e77ad505bbdc25c4c SHA512 f79e0f723d86e7c2060163a3b79e6624ea58d21e7c8ddeb87be40a7972cd97e60df82dacaae23b8a89cec2a0517ffdae8804ac71044685b40d5c5769f8964557 WHIRLPOOL 3ad8461dfae0a9d094c9048d83f4911f9a319c6320e0d7e56c348a86b56f58be4cce5d750df75d989c2680e79d81882c5a32ddc3e987a3908b9397e857a06ada -EBUILD samtools-1.5.ebuild 1107 SHA256 ceb19acb7c14de84d61421c03e1640122fb05d260e31a04466483b7c1b1cb048 SHA512 2f1701695fe3aa270bd75bedc3f847b3057ea1a6d9dca386a8f420df22ab78f51b12c8e1ca80d7d2fb1221d246047a78e914022c8e4c8bae5b0b053f3b130cfd WHIRLPOOL 5e21fcaf76e8f2402abb9196a6d263153c45d05bc81a8af89ea84e637c89b65c765537f0f5e43ae80d9d668edd38192617cdd8242e903986cb564321ab113b75 -MISC ChangeLog 5897 SHA256 5e04325ac9db41a8fa4ad4a91178e93f599c103ef650c0eda17d7ba879cbc328 SHA512 3bb0ec0ff92dae1e328168131e092b122dc95bae412852943788483b145e957254e9c13e85ef81966c1d6afe5db267ea85348d8aefd5c0f21cc13842cf9bdc2a WHIRLPOOL a82733920c2e050d36d2f42ebc6e54cd4782de68788e7d74ee360bfd25ca04dffda1bacfac6c50fb4205ca40707aa5a06f6370b654e48e714e689b61f1dfe432 -MISC ChangeLog-2015 4690 SHA256 d2354c1ec9f2e04bcf587f514dcf487bc93986e1dd5ff5b253a1c3dcd5b8308a SHA512 11d76e3d8992ad22f9425c9f6fc25353dd4ba5ac33785a5d51ec2b34fa427d89a28ccce0cbd252e4c6b6859709fbbd7594a77934e290cb0bb26da4a9e0285b26 WHIRLPOOL 3646b90ee112bbdc3f1cf07114196734447b5753add80a9c1f10d46d5eb42662fa5cabbb3b696d85aae6dc050eec054e4a2aab49d7114bc9e38fab8b68991a33 -MISC metadata.xml 408 SHA256 84d96be1669841f99c7cad425f22f88a835762fd5423ac0ea84929659cd7cda6 SHA512 8c8d240fd37400e43637e12f008f8f2b03fcca062883dd63ccc6956bbfc46d05709f032d146a95452db35b546ff828239b108b3a331f5295ec97872d6c9478fb WHIRLPOOL 1f8c3b08c0264503a911ce0f7e0495a441f73500bed6bb36fbf0507311d491b794e547537c8ad7917dcdd3f59a4f4af3b742caa4dbbc29eaed5ed180e05944de +EBUILD samtools-0.1.20-r3.ebuild 2363 BLAKE2B 6050d698f26b9962192cdbc6c3729bb812041fc92f4ba4490dc6f50e71c08853d6e2e4c6592c324c3efc3ac0da058e8b254475d6fc788f314798cdcaf85a4fc0 SHA512 f79e0f723d86e7c2060163a3b79e6624ea58d21e7c8ddeb87be40a7972cd97e60df82dacaae23b8a89cec2a0517ffdae8804ac71044685b40d5c5769f8964557 +EBUILD samtools-1.5.ebuild 1107 BLAKE2B 2088a3fcc483de227bd92c80cd9ae2bf0257af773298bebcd077d7b2385eb43a6bfde82c7fadb0e2af3400b825e5b1b3c3c4f633cc7631beb4d0dcbb39cdd2cf SHA512 2f1701695fe3aa270bd75bedc3f847b3057ea1a6d9dca386a8f420df22ab78f51b12c8e1ca80d7d2fb1221d246047a78e914022c8e4c8bae5b0b053f3b130cfd +MISC metadata.xml 408 BLAKE2B 28b519bf32b116c92c1a695553637a44815ff1aaf18468a5d2d5ef448d8dd53728aadf7606c6ab53ae6bb21e88fa4a48c7b443e3d0a13a5658592dc0e768ed3c SHA512 8c8d240fd37400e43637e12f008f8f2b03fcca062883dd63ccc6956bbfc46d05709f032d146a95452db35b546ff828239b108b3a331f5295ec97872d6c9478fb diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest index cc814b318224..19f91769a83b 100644 --- a/sci-biology/seaview/Manifest +++ b/sci-biology/seaview/Manifest @@ -1,9 +1,7 @@ DIST seaview_4.3.5.tar.gz 309530 SHA256 38050d6792eb799d61e5e849f76971a9c7d45f467e5c04fbc4363062d8e7100d SHA512 b20c018da9a29d79fe0393fed5d29117729492ea8f36e72d4aeb98044a3de4a13331bd29e76ca552a08f6da764e57e69f9fb0325fc031551514d7a54b56c849a WHIRLPOOL 82fc7324bf1d934d69712629808d6b4178a5f2cdcf25351fb2fe2784f9cea0c1ec0aaaba7a3a08c84795108eb049394ceaab052af8cc0efbb0975064fa4e80e0 DIST seaview_4.5.4.tar.gz 420608 SHA256 f4569ad7f1d8de2b141175b1122f036cb45f55f8e9e59e42d6026668e091e7ed SHA512 a8a2e49a13f87ae4279311068147169b1e17874e9ce5787003b854c7271efc7a128db6916bb883a9b7b0b90f855fe40d83c77e9fd9f5751464e04346b9923301 WHIRLPOOL c52f7ac9d7d4c85d7670bdb3a87c9ba94904b25e11583ad8abf3de9f43fa3967d64b96d447ebb5ebe614053c4de64828d1c3c5763c64dc269e78fb3c49151886 DIST seaview_4.6.tar.gz 424258 SHA256 6826a41bf2980922add66857abe42e3e6a19f0d1bb13845252745db7740c37bc SHA512 e005d9dcc9e03c5636404e94f0059f7d4a9289fe77ecdab765e3ca2b59d826b8711a344f3824d079383a7ede0fe17b3b06694dfb7b709bb6a0a1e38cef6ee1d6 WHIRLPOOL 50375ee836de8de50556a69054baa841f27025d679ce65953aee55d69c89129246eef8896b5833b5874cbdcbc55900dd4e37d4814c4f0a90097cb8c37f0ef1ae -EBUILD seaview-4.3.5.ebuild 2013 SHA256 a5e3ed9063835147e1227e4094941d7ffa34ba5ba44da9b4fd3b3e5aa55420ac SHA512 41eeabeb570a22219f7ad649a4eb127b94a253f914ea6637fcce518da3607e3fb42b528d3aa436f6b86e54b695d31900b29558ec0696c1e4bf3264c42cdfc945 WHIRLPOOL 26e9c72ac903782291e131da4d52059a4b1c79becacd431d00b0726272bc4e7f844626bede2fc7e36a28ccccfcb3a4b0e975d00c3c62d8dd45b39ba99542c597 -EBUILD seaview-4.5.4.ebuild 2013 SHA256 a5e3ed9063835147e1227e4094941d7ffa34ba5ba44da9b4fd3b3e5aa55420ac SHA512 41eeabeb570a22219f7ad649a4eb127b94a253f914ea6637fcce518da3607e3fb42b528d3aa436f6b86e54b695d31900b29558ec0696c1e4bf3264c42cdfc945 WHIRLPOOL 26e9c72ac903782291e131da4d52059a4b1c79becacd431d00b0726272bc4e7f844626bede2fc7e36a28ccccfcb3a4b0e975d00c3c62d8dd45b39ba99542c597 -EBUILD seaview-4.6.ebuild 1997 SHA256 6b57bec3393355d016145f9104ac66b33497cbe1787a9430e45b353739528c1b SHA512 5768df52c205ccfaa4d2d52ec753125dd77eb91a7b0be959dbc67aca00c0a66dc3f13b125d073450a81a06eea29880503981942042c77a0c6e1bb8f19f070cb8 WHIRLPOOL e666cc8ce9ee43e8ae7a9321d7eb5ecc557036aa464354c1a0b0d278d465968be73f77f7a2ea51e1b01eadf0f112973d07022c74ae60c5abcb09e75b1707c83f -MISC ChangeLog 3587 SHA256 4ed7e21c12bc6710319fe46602e6ee30c7436d79a6f5afe8273b754b35f74d5d SHA512 394452bc63381d8c47434cbbba52c40692b89157581a1c1466e5c7199e48d2e938e051ac1bc1d6819f0f2fd555868cc24ff0342c3d015d65548abbb37910891f WHIRLPOOL 4b68d6fa54617fb9308f52727bfa656e22d3550166b3b9a9ca4965a9a52d14368774d7bb9f4a8df43d0a34cc7c243d39b0f8a0efe8d99b05f1d4dcbd844277a0 -MISC ChangeLog-2015 8783 SHA256 0981ab2b9f7546a936e0e57ad0322f7007fc6a83e2b93f230acf665ac333d2bd SHA512 eb595983a51fc83a0d46ced9a6a5416ed2f61e7f1b33b8eeefbbb6979f486fba7582ce01a104ac28626d3ff17b7d4898613e09027f3d6f70bd42fb8e81b649f4 WHIRLPOOL 68f6eeda8f16a080a49467520b832a54341e9fbf265ac7e22d1e51f0f192edeecfc49e2716a860f2229577a194b90d2719756e6400e09b7ee68e91807a2fc19c -MISC metadata.xml 628 SHA256 1f936b9abe506aa04d855215dc6e7b0ea4a22abb2c464872b0f92dd6c2fe53ad SHA512 5ea98118394152f404bf39d35f3e5daf759e5a2107ea43141f7e8e54109ad0f41476e0cd820bcbde057bab96c4680be86cf8c25eacd4b6ec06122b633c062ad4 WHIRLPOOL d0c9e2cab8953fb461bf72802665030b15823cb3cf09611b8dab6f7d71d0c3b131f5f16e324f72310b61caf0484e3947eaf689aba5a58b322ac834e1a62dcac1 +EBUILD seaview-4.3.5.ebuild 2013 BLAKE2B 91c192d7cb22411f7af4366088c1e47c657fc75855cab2a289d4a1d7cec206302b2670612117334d6c6b79d25c578daf3da5cbd053dc98602ead9033c3b90f35 SHA512 41eeabeb570a22219f7ad649a4eb127b94a253f914ea6637fcce518da3607e3fb42b528d3aa436f6b86e54b695d31900b29558ec0696c1e4bf3264c42cdfc945 +EBUILD seaview-4.5.4.ebuild 2013 BLAKE2B 91c192d7cb22411f7af4366088c1e47c657fc75855cab2a289d4a1d7cec206302b2670612117334d6c6b79d25c578daf3da5cbd053dc98602ead9033c3b90f35 SHA512 41eeabeb570a22219f7ad649a4eb127b94a253f914ea6637fcce518da3607e3fb42b528d3aa436f6b86e54b695d31900b29558ec0696c1e4bf3264c42cdfc945 +EBUILD seaview-4.6.ebuild 1997 BLAKE2B 1c7c01e0a52f943b9506954d84519c8ff09b15d307476aa659f7bb49af9de1ea02076bb74bcebaac49a571d18624455879c321faa7458f8ac2660773eb4b8706 SHA512 5768df52c205ccfaa4d2d52ec753125dd77eb91a7b0be959dbc67aca00c0a66dc3f13b125d073450a81a06eea29880503981942042c77a0c6e1bb8f19f070cb8 +MISC metadata.xml 621 BLAKE2B 9c56cc2099ed696942e2958926ee8c9f24be26fd273e74a7f789d368c3a222f084363ec3a4eada5e1197c4a81f533074f4b05c43d1e9c951e66261d55bc4d9e8 SHA512 7c49694ef56359e58b76b0dd7715d28615a541655c6ccaa2d7d64041c7340082bd5026fa2baa5a15e51e3aa27309d5a72ab836a5ee554366eb324406a50a09c4 diff --git a/sci-biology/seaview/metadata.xml b/sci-biology/seaview/metadata.xml index 7e8eb04c0ab0..14e26ee93445 100644 --- a/sci-biology/seaview/metadata.xml +++ b/sci-biology/seaview/metadata.xml @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription> SeaView is a graphical multiple sequence alignment editor developped by Manolo Gouy. SeaView is able to read and write various alignment formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE). It allows to diff --git a/sci-biology/seqan/Manifest b/sci-biology/seqan/Manifest index d84c49f908c6..873ac85e0c22 100644 --- a/sci-biology/seqan/Manifest +++ b/sci-biology/seqan/Manifest @@ -1,11 +1,9 @@ -AUX seqan-1.4.2-buildsystem.patch 870 SHA256 d824d014400b94778ea427c6e6220813201c41ded9a0ec0fbe1aeb891b69a626 SHA512 d769eb4137c8c0ddb7137ecfdb0673ba8648ae720673848cbb473a0c80d479b6e5c564c12f1a9dd01953d955605eb2f273e04808ae50058c565e997381c3f748 WHIRLPOOL ba0447716248743c57b30c7cde6bd81b7af157c4a4b2249755e608861586b4f73f46799bf3c1070bfe84a67a532da1089796b032e01987a563a8395506bed661 -AUX seqan-1.4.2-include.patch 552 SHA256 fb97f772388de6de381c7214b8b5167b2079e19d7f839673e281537c4bc80516 SHA512 b02ab4fe49a511494134e44855d865f0ff210392810970834deb304499b5017764ed1c04d8f8dbfb513c333ac302946e5c72c9160cd38a5ef5ad095a865cb6d0 WHIRLPOOL 26a3278707276b95197192c140589a2cc95cd5d487144975219bf4d918884434b57186093595f92ec009679dc5eb912422520c245691da6e1cc3cc441c284a5b -AUX seqan-1.4.2-shared.patch 974 SHA256 3c704fa149d0d4b322f8bb1b5536dafca35c205e5931a149fce5e82cac1dfe05 SHA512 a509c243244b6b40b26700a73be267558ceb17c4e0079f3eca606835ecfe8d1417b88fd37719ca9cf226e6d2d33ee3e22790b20e39a86a300f722eb186cabaad WHIRLPOOL eb7a76bb6c82e7a312356d0db13b6f90bd0fadc021ce1e62e8f2c8708f25a84911842df4df20a8491f5971d62fda5a738527d863bd10c2f1167fbed82cd00dea -AUX seqan.pc.in 263 SHA256 54978d662cf1fcf4212e90d0b2681f2327476cfc0ebebef9cd3ab0b3b890c929 SHA512 bde1c89624284a37dac1a8717049a3b14340a2543003d9cf8406bddf4033541b65b617b802b18c80b2c7733d55ad9d7484bd85fdc927582363885da6d0210af7 WHIRLPOOL 6a901161d71ccf179b927c8c658a552b1f2dba1ef0bd63ee25f18e4dbeebd23a32d20729b07119f8eefd875e8809b6c56c79ed2cdf3f5c70c77b23a52aaa139c +AUX seqan-1.4.2-buildsystem.patch 870 BLAKE2B 2b3e32e4bea47caf6165e1c0ab89cdadf1e4d4756bb3ddd77b943b89a9366fb28d49dfdc22d69d5c431f78a83fc73b20c486085804a153c987020b3e28120b20 SHA512 d769eb4137c8c0ddb7137ecfdb0673ba8648ae720673848cbb473a0c80d479b6e5c564c12f1a9dd01953d955605eb2f273e04808ae50058c565e997381c3f748 +AUX seqan-1.4.2-include.patch 552 BLAKE2B f8d67014e59751616227471995254684b3edfacacfb455099f99c719f5602c88f0d106df01354921557d3324f77e03934606f698801516bc8432837c6211b67e SHA512 b02ab4fe49a511494134e44855d865f0ff210392810970834deb304499b5017764ed1c04d8f8dbfb513c333ac302946e5c72c9160cd38a5ef5ad095a865cb6d0 +AUX seqan-1.4.2-shared.patch 974 BLAKE2B e46b6b61c4927ca36c53e68e39c77eb5d983221dd074040a8911a7d7dfb04d2fb4c4ded0f3c9b6d90082a26f704654daa1d2b70e547b9ad657cc48bb96fc435b SHA512 a509c243244b6b40b26700a73be267558ceb17c4e0079f3eca606835ecfe8d1417b88fd37719ca9cf226e6d2d33ee3e22790b20e39a86a300f722eb186cabaad +AUX seqan.pc.in 263 BLAKE2B ffd2a2c1ac74af7bc6b33c5959792551447ee61fe87fbb8bc6966ad44c33ae5bd512e836bc67175a3bf1895554364e48fcfea207f94f18ef72b7eae74fbe82d5 SHA512 bde1c89624284a37dac1a8717049a3b14340a2543003d9cf8406bddf4033541b65b617b802b18c80b2c7733d55ad9d7484bd85fdc927582363885da6d0210af7 DIST seqan-src-1.4.2.tar.gz 120601994 SHA256 2b2c48572ea82fc2ac6a6e46bbd4204b6f8200fde717612797426af5ff6b82c3 SHA512 dbb56167c507b70111619a414054d9e70f1db42507bbfdf9e40c5dcbbe9489ad4187d882e638a675e96551c860c08f8203c929c4c9a558b19ea7d6059f50492a WHIRLPOOL 3c7f38e35d826adad94d53d359df8b5f1fb51746f3103457b12b41bd0bf161dc463d4a1932b0b23f2274d723c796116af0940260e1922ce806bb2466445788f0 DIST seqan-src-2.2.0.tar.gz 110936119 SHA256 6add074932c2723ef1fb658c88f906bdd6ced1fc34cb16a7410251ffc4cb8cc8 SHA512 1097372976ec9c86baa3787ac38aa4fde3a3e153d81c22435e6a12df87d8063165f27406de33851bffadd904b0ac4ea579a28625cff6257fe8c14d906f408421 WHIRLPOOL 1241488ee52d315b6ca68ff730eb4d356db2102b8e78eb0be13cd9c07f0b04e96821a78944b3738204f67f08874cf328b0ef609b373cb8b077524b17b1e9650d -EBUILD seqan-1.4.2-r1.ebuild 1961 SHA256 040fd7309a8b6328050d9bb981343dafc5f4b4a700df6dd17d7da7e7f2fd9462 SHA512 abbfc75ee90a12ffb200a02fb713dcd8098e040b79c2a204155a4e5c167966f829b17e6f5bc86752978f1ec2e0f84a474fbc77db49e4e44a6e5bd7bdbcfe6761 WHIRLPOOL 6d62b6a62c68df1ce730891b8487341fb9549854481119bdae1b1610983f69c34661c87f3f05e29ad47e2036a628e10300ad940a3d8f973338840a62f6fc2835 -EBUILD seqan-2.2.0-r1.ebuild 2667 SHA256 8d3b0fa351737038c1596dd29bedf66acd133e0cf4964116a10e599ad05aeece SHA512 6221563c1e5b4332d66f1524b856ef87da90aa730907c3e2427a7ab18493f381eeffc7ea506690131cfecc3f3f692eb447d008dede764cbd5b11475a738f0289 WHIRLPOOL fb86966d359cf982fb1671efe0950ba4ad30a1afe1834250de2eaae008a6a3354fb9e2fd5a2187016ef42ddd2a9c7cb03f8cceaa8241eee2074193a3933afca9 -MISC ChangeLog 4099 SHA256 21ecc5e9e7db99412e4be313a63097a5b081df91329722e5d57e3db625627ca4 SHA512 93bc2a2b24ae8a84d45dcb2bfd3ad746913f0ab7d6883957e7ff3bff95994e2532ee9b08d59d186818ea86e21d9d39c203197bdcaeb306c340af1ec3ff533f81 WHIRLPOOL 10f701807471c698a5674cd1c4a04cc411b2551316a293b96affc9bc051278c6a46aaa0df34af60a79d89c2a1d161b54bb611de1433d1f44371887739859d7a6 -MISC ChangeLog-2015 1512 SHA256 68892efa58a06b8280c4f5695af5fa38a63f614fa321081efc2ae50ac132ce65 SHA512 e92d8bc043e9f7a9a1b4ae8ce81a07f228d2242425d346216a51f4086a7b9df1e6b7aabf2236f16ce665e36cbc9cc6913083b5a7e7db422052c3d44f1469710e WHIRLPOOL 26f302900373ff167adbe3ce18599acae05e3a2294701f02987d0e8016b01abbd6d3d5a138853ab5a762700b00a6d4b13aafdf1265e9e93051486a142bcd548d -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD seqan-1.4.2-r1.ebuild 1961 BLAKE2B 8bd6fbfbc385169de7b230a7f895132968f70f96e1869e760379618d84ac1c8c0028eba27750d9dd64ccf0ac7e97f0a2f2ddf76f1851a6b6e0d112f52acfed4c SHA512 abbfc75ee90a12ffb200a02fb713dcd8098e040b79c2a204155a4e5c167966f829b17e6f5bc86752978f1ec2e0f84a474fbc77db49e4e44a6e5bd7bdbcfe6761 +EBUILD seqan-2.2.0-r1.ebuild 2667 BLAKE2B d261655308170cc44243c759a280ec39bb203f35dadf14518ac12cb940a78197d356bd3dd8fcdaa0e7d7887bc01108b81d62e468b606065c7fb93d13264c0503 SHA512 6221563c1e5b4332d66f1524b856ef87da90aa730907c3e2427a7ab18493f381eeffc7ea506690131cfecc3f3f692eb447d008dede764cbd5b11475a738f0289 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/shrimp/Manifest b/sci-biology/shrimp/Manifest index f23b17a02902..8ffb001afe93 100644 --- a/sci-biology/shrimp/Manifest +++ b/sci-biology/shrimp/Manifest @@ -1,7 +1,5 @@ DIST SHRiMP_2_0_1.src.tar.gz 158535 SHA256 62557cf256421aea17a2b221ef485410be177cfc777a6bb8a3de89718d186f63 SHA512 1cb5d46d59102502acb26c33f1d5537644268704145f6e2ae7428aeaba6681cf1e63f7924d8ee696431675f2c4627da46fd0171f25bbb3296d247339c2d709eb WHIRLPOOL 0091c399830413a97b634d012b68015443ae04e4b3d6ffeb1665e3610226accfba9e21a2ed84935bb0bc4bca9dd92e122e96b905c96274255ad9b9527c1491fc DIST SHRiMP_2_2_3.src.tar.gz 4596867 SHA256 a8bed999baeda2ae17ae5c128b2161b20b896228d754e6e446439c1040d6dd8c SHA512 029179aeeb317194b998c29aa91d1d2ce5ccbc6f9ad4a1043d1e5fc75d3344c2f39500ab07e8389c09fa179f0c9b59afee22691bc4eb5d396777f4e0fe25f2d5 WHIRLPOOL 84325b9db3f2e10baa3db935d6e3e2ecae9fd0f47cf5666ea7493f7a975fcd31515f2c77dbe8fcf5cfa099ac2735973e791fa96f0fe8371c5279353bc3f9995a -EBUILD shrimp-2.0.1.ebuild 1279 SHA256 20b62cd9cad1523affab305c820b5618c4cfa4e27fc1407abbc3131dca94e25e SHA512 d16226d78b627809be5dc8b5fb39e552a71ceb6a8834ad68650fd9d3c69b425ee2e29a56f1e9b1b59e56f43a149169cc75c6694fe35c18ebc052fa7d30b6902d WHIRLPOOL f08c43d86f1ea15edd0efb51fae94fd53d94931354d11abcb1a4086bdde4f10a98b4d262434a3849e777f25a0bb51ab994ae316b3d647bc6d3ecfdc9025b4129 -EBUILD shrimp-2.2.3.ebuild 1818 SHA256 04abbc318833647f7876780629cae1a29c418cb632bf1a822b6fd1c3d9000130 SHA512 2bfdb6f1cf7678dc9fafd66c25c07f55671f39600a44c606bac33652806105ff448d231202fb405307a0a49716557aa7cc63d371163821af2d919422ff9e2e6f WHIRLPOOL 391323a0d760243efcf66df9326b84f150f7d647228fd85ddfa372aeaa5c35e1e2bcfcbdc6970a6ca8e451cde3fbcc57dfb520348089fb2ae84deedfba17289b -MISC ChangeLog 2477 SHA256 b9e8966a55fe6448d690657ea9d6d08953ac2344f4d05312427e943d0f3d5170 SHA512 b1a90ff02a903e7af3749c812be39683e059682995daed5ac7186cf53cf70f5dead1fe2ce6c9021fa9840b774b2826c01ab06407561514e8bc41bfc13da37998 WHIRLPOOL 1bb7d76b98f12a65bbe1ff961bcbfc2d3427ea6254d0b9219bb1f565062ef12642d8206d9aa2cbc02a120c24c1c468d781792a403c7ec25f64bf67e43b7e0f3f -MISC ChangeLog-2015 3578 SHA256 4383747a10a276d21052452177296d6b06e005288e4925766fbd935c757be911 SHA512 1540a70ac90b11edd4d1eb916ea10e0fecf63eb5f72e0d16dda9226541d0d7338288f41ff6202d946d561c5492b59fa84608ae50a0e7a7c41d6283e5f57d0489 WHIRLPOOL a8ab0ed4c66cc9c6b6a1536401709ece68dbf59192ecf955ee131bfd08beca0ea2aa567cf5fb89de1be8d8c1ccea4456702dc6b4e6e402de848885ce2514cf5c -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD shrimp-2.0.1.ebuild 1279 BLAKE2B f6606ff9c467de94228185c483db4da8d02784a5cfb0c8c1ce93ff56971e257836470c202bbeb2f85e598e3881bba81153448d5e9604bebe065110f54b8cb8fc SHA512 d16226d78b627809be5dc8b5fb39e552a71ceb6a8834ad68650fd9d3c69b425ee2e29a56f1e9b1b59e56f43a149169cc75c6694fe35c18ebc052fa7d30b6902d +EBUILD shrimp-2.2.3.ebuild 1818 BLAKE2B 4878f0ce5782f0bc5fb5d4b14d5d713f21268b612cb18a2f14e19e3cca1c2270940b1f74220da0788fea9e142c803bcc77b9b2c04479a9432f06b9b29f3f7705 SHA512 2bfdb6f1cf7678dc9fafd66c25c07f55671f39600a44c606bac33652806105ff448d231202fb405307a0a49716557aa7cc63d371163821af2d919422ff9e2e6f +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/sibsim4/Manifest b/sci-biology/sibsim4/Manifest index 5245b963984d..9bfe96d9524f 100644 --- a/sci-biology/sibsim4/Manifest +++ b/sci-biology/sibsim4/Manifest @@ -1,5 +1,3 @@ DIST SIBsim4-0.20.tar.gz 32118 SHA256 ee02ae5f678d6843cf3ba267140dfccf9648a60d1f01263ae70d405723a35463 SHA512 3802520095e83d3c691804b661696095a4198c4b2a16385c55ccdc8e4e836f82cc9c2251a5d37cb5918c2ee80aeb81737d751e6b065fbfe9c64f1aee3e0ea0c8 WHIRLPOOL b6117192170a7c8b6bcc441c8b31b392410116d25045203ce33e5274a0a65608de408626df5a29fddbbbe34973869b055603defd58d06cbc6240925556b63282 -EBUILD sibsim4-0.20.ebuild 639 SHA256 395e41c62f5f6c5b37c030e277f208f515cf838257783e3cd57f51e4e8ce9a38 SHA512 ef670faca5998f05252622a170e9faa3748b55a10af9a0556a49ef912cdd2e1d985100001846033da0708479112321557a34fb20ccb1b3e82149a79b2da92195 WHIRLPOOL 49c1e3f87ad11eb093945a1de14ad7718ae027f25aed6fb9647f687e273e0e64f3a77eba27171755bb9ea677c395dd9ca16a157ab63be2ab331ec92d0c30157f -MISC ChangeLog 2428 SHA256 11641bf63c21a992118ec72fee3a36fb58a30f45278e20628669e6ef6c47c4c1 SHA512 135e53902c39bcca6455577a225cfbe7314e89b37a9b53b1042f7d0e69ba8c7fdb14d083d97eed67ef8bc5324a51e70a98fe9f0ba069147ec15ca86756997f27 WHIRLPOOL 79c3530e4faeb251824bb1ef0428c4314b57b3828a558e3daa9bcce61a92d97e9dea148891477c356d473bb711f1839215a32dd11687a8005b326e0b2d8dd287 -MISC ChangeLog-2015 1077 SHA256 21794dd8153ff64ed6c4f7a4bfe62341008b891272e58dfbc3c7557912882af0 SHA512 df27a124758be1a2eae4f599955190aa19af76f5d66acc3c6a55001b6e6191b35923b15e819e690888713956e4989090a37f22097b740accb4431ecfcf5d34c2 WHIRLPOOL 938b2fff3d2775393ac4d7bd610cc00083e2f5879aedca081e1def10ef335957de548f2af2605ce592e13af9bb42fcb169833f671eda615d582a44a2ad6bf0ae -MISC metadata.xml 348 SHA256 774d5e527cccd9a5739047115b9a6fdc2d75c98a6a209bab6509c0453d97bc81 SHA512 9628452f960b9837192126173a46e916bfa1f16421a470166ce3812d7e8d455a2f8eb5ba78ccb6f52e5d0acbbc009f31f0eabd5619bc864790c258220333aba0 WHIRLPOOL 55a780440a68708361153b73650a514a3b27073112b7425239812a963df11ec9379d96bcb48bb386e4cbbf16027946f51eb138f5a395f06f9907734681ce07a4 +EBUILD sibsim4-0.20.ebuild 639 BLAKE2B fa9d2b944f158ce6fea94566603e796a58f12fbdff8d94057f6e378bbd7e2cc251a7b38047af227284630157e9dd917128c852738f91a5bbfea79b3bad1aa4e3 SHA512 ef670faca5998f05252622a170e9faa3748b55a10af9a0556a49ef912cdd2e1d985100001846033da0708479112321557a34fb20ccb1b3e82149a79b2da92195 +MISC metadata.xml 348 BLAKE2B 4765b3098d0a6ac9ac1f5677bc13ab1e767d4beb7d9fd02adedab808382a80ab9ad0acf994783bfbfd66fbb5c580459f569215426d713b8c385054586387012b SHA512 9628452f960b9837192126173a46e916bfa1f16421a470166ce3812d7e8d455a2f8eb5ba78ccb6f52e5d0acbbc009f31f0eabd5619bc864790c258220333aba0 diff --git a/sci-biology/sim4/Manifest b/sci-biology/sim4/Manifest index ff74c4d56e58..c5a884f1674f 100644 --- a/sci-biology/sim4/Manifest +++ b/sci-biology/sim4/Manifest @@ -1,6 +1,4 @@ -AUX sim4-20030921-fix-build-system.patch 491 SHA256 f61c6bd531fa66de77e60a3eb0fcd1fbf0050900909be6b3b8e6f7e6ae06e327 SHA512 fdc737ccacd7cb4f7c5534af49587d7958f62dbe66a5197c38bda89af3cdd572231c10af75e8bb59120fa116f856f1ca5ba95279f9a2fe07228543588552f915 WHIRLPOOL 2b519969382729ce1aa2585a54bea390141e01c2df7b040b788e42b33ce5a4a97864ff0dd11b47f6786d217fece9a90928049f3eb2a55656ef6652d92e297cd9 +AUX sim4-20030921-fix-build-system.patch 491 BLAKE2B 87842374146fa44c2788ce7444480cb7be244d04f0e2f2d22bdc5cca766b4bd610b94a5d6088c58ce2005b8e7664fab6ec4b0ea598e833a34fa1edff29e413da SHA512 fdc737ccacd7cb4f7c5534af49587d7958f62dbe66a5197c38bda89af3cdd572231c10af75e8bb59120fa116f856f1ca5ba95279f9a2fe07228543588552f915 DIST sim4.tar.gz 60814 SHA256 0d65166c1d1951e1d0b83e5d221f23f07462b9d8c46ea0d0569f66e35a5229ee SHA512 de7ee4094830262cb7ea8ed2f4573beed96df4b12f2915f669c52fd3fa40f5a4894cd94224e575bfb2588f9a6f19c0b73a38d6209d92a1dc644639a4927aa6b5 WHIRLPOOL b8d7cbcf44a03b5b13a51204e424e7e6ac2ab862e942c943b2a2f0d50bd1a823e3c1542fb2033f4b13f1539a636fb582c8d63b6406e2dc774f72f3eea7cc8004 -EBUILD sim4-20030921-r2.ebuild 553 SHA256 7eea5ed01863028a6640e75be0482c7efbe5e3b7bd39621715fc1a2e9865f997 SHA512 51fd5d759f62b005bc33b2fc37dbf8dc3f8b993d461d5dc2722ed93f8a8e51c19d21ea82105c3544ed23ad831c7e2d5c86e5c63aa3aa19937c4c354426e37f71 WHIRLPOOL 4267cbf1885b56d86cf96fd2bdedbb7f2ecd92c7eb8e3e03edbb15b87411b4d9f0197340d3426ab5dde6bbba84f679bfc9bf664fba6d7fc76eeef48b7e9e0241 -MISC ChangeLog 2485 SHA256 6270458054b23d23137856ecb7ebb2d48cb2f4f19de504de7399a4e42af6f85d SHA512 fd61ae1d8f5f27088860e8ff6c04e82de1b9beb08fa310882ff7839cbe7dad838d974f3f6a3875bd8a700cb6b4d3b7a9a375ba309777634503f614a4e948ac49 WHIRLPOOL d79ee3e790e820ddedc080e8649477620dae5b9263f76c1e1c105b11c2ec5603a724ecea6794e3b02d87d0dd5f696b1c8a57c222cc2f2fafd8402ab938c27d39 -MISC ChangeLog-2015 1401 SHA256 c43bba4aab69e4b6a96a907a221c706459b726c3e84460c91bfab41799995425 SHA512 ba70237e17cfdc2ca0553f0ebfd8f72d43ed5f28b5d8b89ea70a6e9d16155da0ff4e29e52519782fe635451fb266551afce9436c0d174a204d480faa8a5eccab WHIRLPOOL aa0b1744d2e31c31f555240c21e107b5f17b2709a485088e91a3e44e52b3433d54e4a6e47d7d2c2cb1ac29541c6f53ced275e41f33df216e794da432178e2a11 -MISC metadata.xml 1228 SHA256 f3afc9dceef2eb3ee4ad39648b3478a165c1ac0299e3b91a8fb9f8defccb9597 SHA512 417eff4c0d22bb4bef9bd027c79171375f9638e7efd452444d2c2a40b79a02c24f69b6158448420970a86e87358ed6bd397307b227cbe1b3bbf6813b6433d565 WHIRLPOOL 8d44044f8c3326919e7dc10b6d875dd9a6e6f549f8c47a223dff0bf0219eb0b307825be7415a88d02fac64c42a31bc552331ead417fa783db019b792acb32694 +EBUILD sim4-20030921-r2.ebuild 553 BLAKE2B f7f2009a850ccd08bb6d9d0eb3cd9f82e5701bcbc3c1e7bedd84109eaa63a6063dc76c0f6c893cc661a1a5d728918c8ebf05e203564a9eed4367c1ac9664473b SHA512 51fd5d759f62b005bc33b2fc37dbf8dc3f8b993d461d5dc2722ed93f8a8e51c19d21ea82105c3544ed23ad831c7e2d5c86e5c63aa3aa19937c4c354426e37f71 +MISC metadata.xml 1228 BLAKE2B e3e87915a4b710b37be351835010d57cea2b044160a7e0a5651366c07127509e6bf422f4b20b314a0810a86eae33d44612a758e1081f7dcd194476c30a784c1f SHA512 417eff4c0d22bb4bef9bd027c79171375f9638e7efd452444d2c2a40b79a02c24f69b6158448420970a86e87358ed6bd397307b227cbe1b3bbf6813b6433d565 diff --git a/sci-biology/snpfile/Manifest b/sci-biology/snpfile/Manifest index d90be00d3b92..262b499e9443 100644 --- a/sci-biology/snpfile/Manifest +++ b/sci-biology/snpfile/Manifest @@ -1,9 +1,7 @@ -AUX snpfile-2.0.1-ax-boost.patch 973 SHA256 a698df5bd1bfe04f40cdec8275fe3fecfced9c0e8cb43939e9b70cf3fd25cb5a SHA512 cb517e30c06620de9d007261d238325daf48709ccd875d90c0cc99049dfd0ce80a506a3e9a97c786ac8329b1f1463a810407927cf17c1a25689b03f413417b94 WHIRLPOOL e91815cd15321f0bbb62d9e73a9ea3ed80027b284a7a81d42c3c49c249f0dc6e8d23419f6606d0e51083fbf53f200168f60c26d6bf09a59d3bff7a34397783e3 -AUX snpfile-2.0.1-gcc44.patch 387 SHA256 349c6594759f16da2602415ff217c37bb677e2508437497b508c91ab4668956a SHA512 ac66850cae2bbbad9e1a989772490eb23ea3958c233e0fe32b20ffb3d7b5f547ff9d045974170c3302e8ca6bbbe5a2055acad24bb80cc6a3c527c3164e3f0e84 WHIRLPOOL f72f1321fce7941981780246d8837d260097eaf71ad1f352ae2f7407971a6625f2f9fc319904bb95ceba190d9e51b63212901798f8bcd31114e7724eee6adc00 -AUX snpfile-2.0.1-gentoo.diff 20224 SHA256 b3275446db38b35999aa25bc2aeedec63b206baa8e4d339d256b7d25e425d1df SHA512 8628aa298b38376e439739c813ec87c80eb7c7f7874335e8f812eee05fab205ae900a00ec819021699fe835c2e9d38f880e9b391ccc4bfb46a8b91f028ed84ad WHIRLPOOL e96fda8d8f54ed912f48bfd539fa04a41c436f6e4b097f96baa6b1864dac2b55bc67a2ba309466c25b3bbc995d38517b7ee0a497107b9ea69cf8d2a2d982750e -AUX snpfile-2.0.1-gold.patch 1066 SHA256 e9c256f07aacf233a5bf159fd25f536f91b650b425f9f8e39f83ac03741600e8 SHA512 81f2e5e91890e52cf40553ea70b12cdb09e5b8335303d72f6943e0058b62eb061eea4e52595c267de81af219f7b863025fb2aa7364d976101628b1f65ba27075 WHIRLPOOL 52465222846642807e2a721d8528dedb9cd5fdf3da1db8b793ed94d6ac3ef1fcab61621b4fceb0ee6eb5b6f99d89ac8bcaf584404bb1a8b4d064084e0535a69f +AUX snpfile-2.0.1-ax-boost.patch 973 BLAKE2B ddfdefc7aae1c5e1e95498a1e3911f32455fb3918f390e0d2d741eaf67b7002b72af99e5d5bbf3cf0822b871463bb0624869c1d98fb45b2a2275b8790c0148a9 SHA512 cb517e30c06620de9d007261d238325daf48709ccd875d90c0cc99049dfd0ce80a506a3e9a97c786ac8329b1f1463a810407927cf17c1a25689b03f413417b94 +AUX snpfile-2.0.1-gcc44.patch 387 BLAKE2B 8ce01199b75387b700aaf6a3608212370aa49a0cc896cd9f2ac9c5807f03ed1c7b8663d8a6a2420bb5247ec461aafd30d6e64d3509300faeaa36b8d77259f68e SHA512 ac66850cae2bbbad9e1a989772490eb23ea3958c233e0fe32b20ffb3d7b5f547ff9d045974170c3302e8ca6bbbe5a2055acad24bb80cc6a3c527c3164e3f0e84 +AUX snpfile-2.0.1-gentoo.diff 20224 BLAKE2B 26ebe8dcccf954830621eb60f28e55f0cd4f759adb6a049b683cc5e69c084b4a3c09ee3b6b48b7d93757590686ceee8678b5bf643f65284583a894e122fcd6f8 SHA512 8628aa298b38376e439739c813ec87c80eb7c7f7874335e8f812eee05fab205ae900a00ec819021699fe835c2e9d38f880e9b391ccc4bfb46a8b91f028ed84ad +AUX snpfile-2.0.1-gold.patch 1066 BLAKE2B 18b6353d38ffdde0f7ceb935f0162258e046e730cdf6f5a62f2d4a2918bdd3846b6306f33dda392f30bcd5c00174f1f24df3c5e94719d563a140b54922ca1cfc SHA512 81f2e5e91890e52cf40553ea70b12cdb09e5b8335303d72f6943e0058b62eb061eea4e52595c267de81af219f7b863025fb2aa7364d976101628b1f65ba27075 DIST snpfile-2.0.1.tar.gz 171854 SHA256 71569e0dcd426447d1a5d215fb47615074a4c8d935cf70ef63c5f47a411b0b76 SHA512 e217e8b600d3ba7e2a8a0724d867bd9760572398f2e4e58625c1f74b0db9aa913db266da51fcfc05b90f3faf9eb6fbeb7bd988f105de013b51c24caa37c678c6 WHIRLPOOL c47391cde1a2fa8a93a1ab6ae0ee7e32519833fe08fd87ddc0ef0872e6bc9269ad0dc609b7c09a52248793dd0b31dcdc88a0528e966c4fa5845f4ae8c943ab9c -EBUILD snpfile-2.0.1-r2.ebuild 886 SHA256 f8d6e6258b0174b926aa725f82d55aa7fb01a4b61e32f2eb5d2a4a1c9a32f0bc SHA512 7946475e80f92a1c76a4e92500cfad3f6eb4e0463014e07eb517f6a4ef0fb3ebff7143d18d22c887d970f186cc7a0847788d8b55e5b297d04820a9dfdb3475fa WHIRLPOOL a1e0f738ad79878d0fee33d6cd65a3a2ae86e011b777e56ab18e64c718970888284aecba4ffae382c2452e2b7da21bb2911aab473e3cb982d550898f61d0f330 -MISC ChangeLog 2593 SHA256 d47b1963a522cb0aa61fcac9c99bc19048532c6529acd17c35ec129bae26b3c9 SHA512 cdf29488256a34f777645873d76cc937d09358d9ed7595bf1ea88cea9d76d7afd0c8b5807bd2ffa45743b9cbeec3387b22f78c1c4615b6d7ffa427168ee8ff81 WHIRLPOOL de7ff1cae0892016453fc5585a026315e015cf7a77256e37f729f4ea13b8ffb306c3da397f9aeb265c02a72e4cb9f14983feb37ec696c0557f913aeb054408e7 -MISC ChangeLog-2015 1830 SHA256 4c163b37a8e5d54243edb64561dba7a7053b78a78c8292ce659abf802628daf3 SHA512 f1f9fd9c8afbf372df12122953fceae78c14e2835843ad48587cb2aff073cd1bdad5bc70e2b9ca4a74d4f6e63ae6acaf92fff815d411c25fef56596b3841df2e WHIRLPOOL 07f7460167f61aabf397d418c194ad02f0e00f23240a4e28b39aa3aec01524a9664fb78d3c6e90f76b2def9cfe12a639fe9460dee115be34972c156d845b9b90 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD snpfile-2.0.1-r2.ebuild 886 BLAKE2B 03dd4c564b84e036d53af3c55a208d94975660ac53c14dcff971f25a28e8a03d3a21ed83d59bc1b0ab6f7e11b04d4e1a124c942d61fd9fc92f94deeb1620895f SHA512 7946475e80f92a1c76a4e92500cfad3f6eb4e0463014e07eb517f6a4ef0fb3ebff7143d18d22c887d970f186cc7a0847788d8b55e5b297d04820a9dfdb3475fa +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/stride/Manifest b/sci-biology/stride/Manifest index 56dab2b064db..f5b4b021e94c 100644 --- a/sci-biology/stride/Manifest +++ b/sci-biology/stride/Manifest @@ -1,7 +1,5 @@ -AUX stride-LDFLAGS.patch 280 SHA256 3b2387a0649d76a24d5e9ed611ec3da43ca7844a3ce3704ebbad63699328fd10 SHA512 d3fc5fec53066fc5f015a2b741bf5e3a236db4eee04ae7908912036c0be004e9827228b9153188f2304c91eb44e9d029996b4d86eee7baf0d109ae87776504f8 WHIRLPOOL 97e620a9e57d76ff74bb973bea2f0841db6480856aecaee0d3ecc0da7a7889862613bdaf8675227b3207b9f19a4c358127e66880ce733b170adc27f21fcdaf8e +AUX stride-LDFLAGS.patch 280 BLAKE2B e33e6b77463be3e1e58864b70ab931b9983107d69b86c89988bf20a163744350d28a47e36a134ddebfe1cc6734ca2dd3e9cddcea2e56820fe7afe54539735300 SHA512 d3fc5fec53066fc5f015a2b741bf5e3a236db4eee04ae7908912036c0be004e9827228b9153188f2304c91eb44e9d029996b4d86eee7baf0d109ae87776504f8 DIST stride-20060723-update.patch.bz2 5621 SHA256 8d48627c294b4efba67acba10fba47b20c0a8d5f7e06c2775a2d7eaaa0aa7b81 SHA512 e06eb68b907615e12dc1a9981be157400e9ffed9391a906cb4eb3ef4067b7027c26cc600298053bfc5d2bbbebbbfefe0e6b18d0e4f6fef2172768e6f95498af1 WHIRLPOOL fbe19cd7da96a845a001f5fcfb6c0aed7b9c4c152b48ef9ab9df63b1d72c9a97e545c9a6e12c5c58823210dd48050392b0a9c0758c1d57c3677ac5092de863f9 DIST stride.tar.gz 56441 SHA256 d272700bccd046199f6ea1faed31a2a2662a7d5f13b7663736a1818ac18c87b9 SHA512 cbd40fce4684728f363520540132fc1a0003126954a145d59aeff48adb20fdaa66520bd12b56ee5d2906e8ea97bf78a225204105b820f7f368aee5e790a6471b WHIRLPOOL 843c789eda18da69a670a134f8a19103381ac86d611a3e1f0b47e17c3d171a195b8064d131ec3f81a561a65d8536d5f8a8c3a490776646b50ecb6aee36c46536 -EBUILD stride-20011129-r1.ebuild 917 SHA256 3996ef9e80e77f2606a79fbe2749d7959a0b09c3539a9d51466cc4f353f70362 SHA512 633e21ef055594d0fdefd0d852b68b1585bda766616ab53fb3c69ee88e73161fea34d2c5428bc1b51261c04f65d760beeb7217eba61177fa108c4c505d4f013b WHIRLPOOL 719df7ca621cd02887165a8d32f0f8cc934eb7aecf7f8f53fb61bd5cd03fc89190c5b5f218994aeac605340bab3caabf495688bfffcad766e604fe2a5d7484ab -MISC ChangeLog 2497 SHA256 34c34cfc582afb6ad1be0d3af7e444f4dbf7318d89a8ff131fc0a78f78c6177e SHA512 5689c4ccd28fcd165a1e6a482b2ab69fa24173dead46bb9cb1234ebce361dc171e55237212efb6755dad39ec437274fc038e5372a67432c736d1a6d74fbd554d WHIRLPOOL 7f3b2c9bb1d914f7d050cd08923df6daf0b30c3f76e60425d40019a54c3eb114c0e6495442383cabd28ad84c12b626b22f2279c72e4259d8d237aca49134fd7a -MISC ChangeLog-2015 2710 SHA256 653ff520260937b9eb594defc133f225aafad87d16e5fec4e626a10a64220dc5 SHA512 1abe246c3d06d8293a379f587c9707ecb52f85569cab631713ee0aa4aec34e31a8cf000ef1ad4a0e22e6eec341600e5fc7b5eb08d865ac628df1c71bbeb7f1c9 WHIRLPOOL 0ba77d088ec2106b6aec73c9b07993f06998bd460edadafd8f56c05d5791bff24df18248f0dae27d069b8caa738390ea03a6202d9fdb092be0fa721bfd43f504 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD stride-20011129-r1.ebuild 917 BLAKE2B fc125782bd5edf45f8e6048383ab048ec7c86eb8ec1076ad76327a36c6a68e454f79bab0007cc68a55996f3ec6b29762e9c55d4fa1f5187b238abd7b7143a56a SHA512 633e21ef055594d0fdefd0d852b68b1585bda766616ab53fb3c69ee88e73161fea34d2c5428bc1b51261c04f65d760beeb7217eba61177fa108c4c505d4f013b +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/t-coffee/Manifest b/sci-biology/t-coffee/Manifest index 297927345e87..7260cffc3d6a 100644 --- a/sci-biology/t-coffee/Manifest +++ b/sci-biology/t-coffee/Manifest @@ -1,10 +1,8 @@ -AUX t-coffee-11.00-mayhem.patch 1230 SHA256 591a68129f5f62a1e7bf03b219bf98c9e2b0534a9abb0b9657fe81288bc94f13 SHA512 b2c232f3e517c9c944c3d13a96b8383f8875e2e968ed16df25e37c6bfeee106cf82f9107187081753fbcaba6e27713fe5f4ca51d2f859ea7e8744f3b2b41f035 WHIRLPOOL 5d66e781920835c6b7e283a380fe166a38f6a9ed250f808634b491fd5f4634c2f3bce4f77396e94113b10af8fc290ab04daf9076d5ab9bf75d8352b178025281 -AUX t-coffee-11.00-set_proper_dir_permissions.patch 1203 SHA256 df138a69c325fbd0f1beb12adaa2a1fc33bf38174dea128f036c2fe42e2d339f SHA512 fb19aae00ccc0824bcb757d32ee921159e9ece9c0336b3d663e0140ccfca77bf3fcce0eeb304517e41dc1dd4c9469c345c0c35fe8e7fdf120c6fddba4a4e1524 WHIRLPOOL eadcd416d579f3ae69d82d0c49ff1c87d7a540a2fa8e246af5ae89eedf47d64e76db5a39d692a82e6bf3a5ffa5013007937ecf7214c0985621f7e571e2e743c2 -AUX t-coffee-9.03.1318-flags.patch 3376 SHA256 a6519f65d456bd62860444960f2978de884a1a9a83c4558904277629cbfc8b32 SHA512 db1d4463280a95ce644065c64a653d31d57d144c45afba5ff1dd03911ce3c3c1afb15a29c09b4089558acc364385e3eeddbf9179c662191d730d34e09675243c WHIRLPOOL 3f362b8437f1351b6f33eb25761189c783312e397228bbd70a58ff188ded2c5abbed980fb23231cbce240272872edcbc24d3b5556934f148dbeb6f1c74fee1d8 +AUX t-coffee-11.00-mayhem.patch 1230 BLAKE2B cd54632fb5760f9d76d9e72d69c2d893e0812277c6de7414546a699cf8d98b497273f9ce3f61407181d6c7f0ea0d7720b1de10c02304b92a7d76db3e2732b023 SHA512 b2c232f3e517c9c944c3d13a96b8383f8875e2e968ed16df25e37c6bfeee106cf82f9107187081753fbcaba6e27713fe5f4ca51d2f859ea7e8744f3b2b41f035 +AUX t-coffee-11.00-set_proper_dir_permissions.patch 1203 BLAKE2B 220f1932cfab4f3d39cfcf3191754c2a2705c75c9cce8f11d04fb3fe8e3c3e60a10251b01c2109faad2fda4a5ce57ee5e5e598a0ec841c3bb0fa19d0e8e4d636 SHA512 fb19aae00ccc0824bcb757d32ee921159e9ece9c0336b3d663e0140ccfca77bf3fcce0eeb304517e41dc1dd4c9469c345c0c35fe8e7fdf120c6fddba4a4e1524 +AUX t-coffee-9.03.1318-flags.patch 3376 BLAKE2B c578abe18e4ea8b038789c55887c1f1973ff62dc5a9ae28c6b7a959e221d818909bd98b29492b56d64a81c7c408a259b979b4e73f7ef948b605787a61dd2f61e SHA512 db1d4463280a95ce644065c64a653d31d57d144c45afba5ff1dd03911ce3c3c1afb15a29c09b4089558acc364385e3eeddbf9179c662191d730d34e09675243c DIST T-COFFEE_distribution_Version_11.00.8cbe486.tar.gz 3526354 SHA256 b8018433574ff7705c49cd974bebb06a48eb8bc5e38aaa9eb4f53f2e7778e72c SHA512 5c486411bae430cfca6f4623f4dff348e2d9ab7c2eb0edef8059c6cb9c01ee48347e06be0c5d19ee1ace4b9f597f19beee8da2d7eecba29c5a78c2aec800be92 WHIRLPOOL 205eb1b416b38c4d86722ec501d815cc3f9f974a79e07f6fff32855972a9d3a9849585ca345fa66bbcbe15dca8f16930e7bafe44ce5d39e23f9f73023da13b7c DIST T-COFFEE_distribution_Version_9.03.r1318.tar.gz 3455629 SHA256 5bb9a531a4036b741a8ff0fe19f3591a3f33bf7ac4f484e5329b1b5dd1fff43c SHA512 40220c9fca5bee59b66757162ff2279c2ab221cca07532c64ed3606a95a787080cd4d6bf301ca6d20d8ba4f0c2166e5785fc0ad81ed6528eb527f24d59e79cc8 WHIRLPOOL a9d6b5abdf9851289d1de985fe0eda16f40d72ad23c74ee80ec7a365d9e6124ba12b4dc17894b98bd8d886f4dd0a25bce96cd4e2ec1bc7c2177d6ab8aa00bb65 -EBUILD t-coffee-11.00-r1.ebuild 1279 SHA256 cb2f6c279a6728135d09de8e0e0072bdedfdeaff023c5e05b1cda50ed9cd7e6a SHA512 e2e5c6027efc490de8f83bcfdd32fa67ad1b1e40539ccf3e8e2523a7242cdd24621877afaa5f6ed8998e68919faaa439ae8a010638c60c2123b6423cec2a1a3b WHIRLPOOL dc70ec60dae9c3339c3bc33b02bb74135c07b208763321519289a8e70c29770762a5c23cc0c7e7527c403c27eda4ab10f713b9a9383c3fcab8fd58ace4a49790 -EBUILD t-coffee-9.03.1318-r1.ebuild 1335 SHA256 6505cb1df112a38868a971295400fcf36fbc669918933bae97d88772308cf9b8 SHA512 92e0607a498f4d84b297d492bf3e12b6565e25ded94e77e6703ea3b5d9745fb1c6cd7d4f8914fd859cf4ccea8c595069669dd47a607901054a344f6c564ab8a2 WHIRLPOOL f6589ba9543e60b4775d8a0f69c0022a0dd9310da5bad37542edce52f8d4be5030980dbc6166f8bbb8a8a6b3c0c76fc4529743a27c82623a2824b4c007b14e95 -MISC ChangeLog 2950 SHA256 69d9018b2fbf47a2989ec1e2bb2b544f5848b7357d326911fb81950af229974c SHA512 24bd756af677fb4c158e5bbb9392d7812f8c8b02354d038c0e144a2fdacb9c1431ffc9e8f7a42f0c3ad7256773ae622d9290fef6802a6f163e880fc5e83e05ba WHIRLPOOL 70378657dfd49d902bf449890ee8908c8abaaf401deb9f90f3f9f7659d8492cd65c049229ea76208916c1c15207ac7f6071ad19fd07d40e472e209e51cf6496a -MISC ChangeLog-2015 7815 SHA256 133b325ff75dc47a24b53ee303328acdebfc5a28b7634011fc6668c7ea648441 SHA512 edaccc55b78bd5676b6bc6fd6fb5bca2f5030cb1b114af70f87529758f9359f6f9fef8505245a9e8d5d9a193cd26469b1cfdd53f71ef98c956c7c468921ae396 WHIRLPOOL 00ca5b9ac841ead18bb4c147cfd63db72b4b8f37a74b21138c4a44a6e2aa039e9c460ee0edd1ba4d009da386bd7f845a0cd8d1c0cb562262602a3088bdf8f8c9 -MISC metadata.xml 769 SHA256 d80d159fbc721007d2dce6ffcd0f8ae345f5d3934f3c454f0b85a814ea6849ac SHA512 33c84555d372ac808c763161ba35fc0c04b1aaaf400fe08b0d182c7dcb1f1c8d4f4e247bd0b51b744e1debc0e4805402d2195ca7b83be59d5001bcac0a5dbc6f WHIRLPOOL 3563ebc92c047fa51a9d23426428fcb495291695c53a1b3ee8663ccf14c265cde43c6069128a069f3b10264946b0e794e0b823713cfd1367b3cc2ef1c6105640 +EBUILD t-coffee-11.00-r1.ebuild 1279 BLAKE2B 884bd4f7397dd7a8f170299d515e137f7773c58046011879b4d98d7da86199a4541c29cbad685221fbf668c02e683461f230922ead73d7beade10dc01a656c42 SHA512 e2e5c6027efc490de8f83bcfdd32fa67ad1b1e40539ccf3e8e2523a7242cdd24621877afaa5f6ed8998e68919faaa439ae8a010638c60c2123b6423cec2a1a3b +EBUILD t-coffee-9.03.1318-r1.ebuild 1335 BLAKE2B 2c4c5aaf24cd09f76643a7d87d942ae2cb699e6f427515454ef2af8e0b6cecc4a1797034b054db4dd2fbf38595274950d02e05d431c75464d4f985e72e229f74 SHA512 92e0607a498f4d84b297d492bf3e12b6565e25ded94e77e6703ea3b5d9745fb1c6cd7d4f8914fd859cf4ccea8c595069669dd47a607901054a344f6c564ab8a2 +MISC metadata.xml 762 BLAKE2B 38e430b2aa0736102b7c8b958c3854723f0d5c88a9301240f9a20d8cdd6f24628ba735aea82d7a379b93d93dc3845e963e9624045933886a2bc09658eaf7827c SHA512 fe31bf756f5e3dbb048e691ecd01ee86000f65ae4f5c19df3c5c3e2deb7fb8ffa83ed39c317188302a8cf2a0d152323a0258497cfb0e3e355dded08b060d0310 diff --git a/sci-biology/t-coffee/metadata.xml b/sci-biology/t-coffee/metadata.xml index d0787617064b..b3853e6454a3 100644 --- a/sci-biology/t-coffee/metadata.xml +++ b/sci-biology/t-coffee/metadata.xml @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription> T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures. diff --git a/sci-biology/tophat/Manifest b/sci-biology/tophat/Manifest index 0c7873ed7863..7287df6360ed 100644 --- a/sci-biology/tophat/Manifest +++ b/sci-biology/tophat/Manifest @@ -1,8 +1,6 @@ -AUX tophat-2.1.1-fix-c++14.patch 655 SHA256 77bdb0077062ac54d3400d4b8e8cd64a402ce8e502f5186515a30a230c4f6bf0 SHA512 66f46da853ee56821c50d46cb6853f082009dfc4d5237ec82371db9e9f5435a5a84420e03955aec7ae80076d3da492e0be7ae7d34bced06ee2ea845ad23974ca WHIRLPOOL 7fdef9f723f816829059483f5804a1bdd197fe54d0e843dd47dc21e951be757db2c5197d99942ee437393cd5212cab0526ff512b2326b1e8e34e7091282b6936 -AUX tophat-2.1.1-python2-shebangs.patch 758 SHA256 c040207f777c7ae0ab21776ac6a590dd7adf1936b7b29ccac10e0e315400d31c SHA512 887e5a8b02c2e43a7fa35c9f98670dd722527c45454ca24d5e2f9d2f372267905d7e0142317769b14830706cf82868cb83ede970ffe527f736d71df794fd6342 WHIRLPOOL 4323ff6beba00aae98904388bd8983bc23f93d2edd6a8a0f35518d9dfaac22dff304893636362b49084bc73e8c0789418ab5da1930e3fe4f9416b97248f78bda -AUX tophat-2.1.1-unbundle-seqan-samtools.patch 5224 SHA256 6ea748a1185c485a2c257cb70103fe91b9c4133fc87af5b429beb97f34c4624c SHA512 d920cee92a0a694a34d6ac5b949e5b883bf9dcff338f36e227cb014732231b96461c02e75418972c85880169751a96c2367f6a4be6ce8c91f310b4b4f6858248 WHIRLPOOL d39046119c21d7d14b93e68800eb2f6780c9e8d853691ab634bcb37a8cdbc28c370d2c7d75231fab0fc9cf1758ac4b26ca4fd6085afa2afdb492cec68b71b349 +AUX tophat-2.1.1-fix-c++14.patch 655 BLAKE2B 760f2d371e6467340d31c688187a62b0266f6a3cd52cf79db6917a9a5ec0538952b8a5212c70a16f7af5413fe7d5e2b002abf8f77c081e9578a0af9c5ca9d36c SHA512 66f46da853ee56821c50d46cb6853f082009dfc4d5237ec82371db9e9f5435a5a84420e03955aec7ae80076d3da492e0be7ae7d34bced06ee2ea845ad23974ca +AUX tophat-2.1.1-python2-shebangs.patch 758 BLAKE2B 83bda360dc36d3eaa890adee00bdb58698fb5eaaa29255c85b3b63f61536921386115662051a4938d21079a3eb1a103dce752f0320fe1990535d35ae74480fcc SHA512 887e5a8b02c2e43a7fa35c9f98670dd722527c45454ca24d5e2f9d2f372267905d7e0142317769b14830706cf82868cb83ede970ffe527f736d71df794fd6342 +AUX tophat-2.1.1-unbundle-seqan-samtools.patch 5224 BLAKE2B acdf26085b6eab54f478f5e31e2f180a008b9a05b853253f8f161759dc79a0fb5ea0c54bbf3a0f4ebf79da71988c60d17899aaa1ff6e927a308eca01edccbdf1 SHA512 d920cee92a0a694a34d6ac5b949e5b883bf9dcff338f36e227cb014732231b96461c02e75418972c85880169751a96c2367f6a4be6ce8c91f310b4b4f6858248 DIST tophat-2.1.1.tar.gz 2259554 SHA256 37840b96f3219630082b15642c47f5ef95d14f6ee99c06a369b08b3d05684da5 SHA512 e2e0943a6f3d34b83922e6e403b65a3bee480a2b2bb4bf2de0cae7e0ef5bb166b66fec923316c2b643e8550e43c842f0f1bcc2ca7249d20fbcf5a4733fbdeabc WHIRLPOOL 1e0d2bc4031eaa56a3b77ca5966c2ed439a85c9b05f028f69f4477d517e51371156bbe73d499536148eb42d60641af7f294641ee79bc855fcc4df74d70dae26c -EBUILD tophat-2.1.1-r4.ebuild 2182 SHA256 aeb2961cda7f0137cb433f546f81a5c525fb6609980b42bc8e93ad2d0356b4f5 SHA512 b97690d43bc89aaafe2df3091602e3509cc1ef4ed2323a58aeb734329f587872325bf73ad69b899d467591bb7be5f685ebeb87376e5fab4b867831b3858c92f0 WHIRLPOOL 9a37fcfdf7574dce58eb9ddc1842a94c95066fe212ebee3d20aaa13608feb8b1c2a47cdff2dce483baefcb9f9d22461b97e856c30d08a386f46785e87650d034 -MISC ChangeLog 5031 SHA256 b2d1b226a5a334ca097fbe4f85a763499f81e61772ac37994729e792188a38ae SHA512 b2b79ab44987b781cd1a8e0dd4e1e94970666bcdf28902b146f8aa1ddfd808beab132623042ad5079b5f2b40a712d8be7afcc7de181a230b7f9dcec366c11ff4 WHIRLPOOL 2be3cc2ff83f1e342a20b92342ecbd6875437faa4ae112a394d34b22886be1b453539ee0b03afe7e44edfcc5f298dd461e19437b0431d6a3ee37dd919113d338 -MISC ChangeLog-2015 2307 SHA256 66a4e11a7ed49f16ba25f9cedd4fbc273a6a246eb154150276d5b64a642aa9cb SHA512 ed08c5028eb9569860aea71787a5e8d44d9d9d2995f593724371597162e6bec006a4a6d5a7d157facc1f1f6d0003c239ac2de05d1d96ffc58d345e5dfe4b9969 WHIRLPOOL 36e0146907a219cd618af78d36be2f3f60bec0eb187f4ef74f1881f40e049be306a4486fed747a8e78cba0c8d67173ae0175e3d47380abd180467a7c4fb0c4da -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD tophat-2.1.1-r4.ebuild 2182 BLAKE2B 31ab114249ef61d7e8fc6d47538483676bb106c9ebebada91236dbb2cfbd9e17aea36d7f480b552ca8a204cae7d6bd10f201ea1ccef7bd23ada5a1758a78b968 SHA512 b97690d43bc89aaafe2df3091602e3509cc1ef4ed2323a58aeb734329f587872325bf73ad69b899d467591bb7be5f685ebeb87376e5fab4b867831b3858c92f0 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/transfac/Manifest b/sci-biology/transfac/Manifest index 4e3f2a1a7606..30c753d0759d 100644 --- a/sci-biology/transfac/Manifest +++ b/sci-biology/transfac/Manifest @@ -1,5 +1,3 @@ DIST transfac32.tar.Z 3346266 SHA256 cf5c64e6f23037d73562d66f9dde56a767a8f31974a1c0906ec68edea3731a7f SHA512 d7004f90e57fa2b8839714e50b9ce1f67357db404adc1a5caddd1e9b86c8e3e9f4e85bbda15c4d6afed85da82ae8615f63260f9a3df9cfd79897d38896893b9f WHIRLPOOL c96ce40f5deb4e411ac754904bbd0a34636a21cab919efb10395547b381d2af71083c84d83f2fec12328b42f2c1e5e030eb3c9c66c73631429d5f81f48acf9e5 -EBUILD transfac-3.2-r1.ebuild 999 SHA256 8234a4464754bc43c038ead418adca13c70f9d95b89e7cf36b7d2c722e38b631 SHA512 7b3680b0fa6887ea1214f7f90e5bd979f8111f995e037fd0eb7ec8d129117bb5721c2aa185301ad0b57c2f83d2abf4bdc2d478be726d54ddd0d09ab8c969dc80 WHIRLPOOL 15a93c1f19ced586d587ea7ef33a9f937faefa978eeec8528de3d28792c89f37be1ce5dc685e454ed26296282313f8b3c05b2f79abeaea153c5f8e7ac41c026d -MISC ChangeLog 2429 SHA256 ebde02d5b9d5b4b31e4edf56ad5b0ff00afa8a216f776b973739e648d2611c2e SHA512 5f9c64432cce206739501dbe7c2564f9db6c53099ec99fa93ed7aa6e09140824c70b63229e0fa54abfa884a8b0971a54bbac284f910404d84d9037bf2a265a4e WHIRLPOOL b40e770039c35e51a9c273e2564952af651239dbb56af30bd09781b588ac6ec3253e4010d5d2bab435c2a59db6da1818817fc0050fab163d438564c41823e673 -MISC ChangeLog-2015 2317 SHA256 4975078ba982076d639c909d799f0220d7d800c5b24a491f181ab443b2f2a13a SHA512 0a6ad259808c1cadd7fb2b6045422776881738da851f61ad98c65a958c75002daef7f898c9628836ea75144a873dc4b91e96e71f4d1ccc012b4b73a9e9331e74 WHIRLPOOL 2a5d0e3ef8245216854c8ffec6007f499610039aa37803bd5fc1ac79f89e419af641b5e522966ea4758838d5d787493351eeddaf01ae1b3be5ea4d952c7c8ada -MISC metadata.xml 696 SHA256 b2775254abb111a223173f6834b77d035e84a791bd8b948a21002681c3ab324d SHA512 22cb9c39a7dbd3830cc64082657d8ab0b04b217f3540c912c1f06256e45a285ae9fa56a334ed5ccda2c58fa4a9407977c8f26906cb3e7000e3a69270dded6159 WHIRLPOOL 99dc591db6a468c7e7f45c2d2f835fdaa3f2bef0f359f35facf648b8e77dcda627181f1787a90a5018f6fd9632d80dd8ef4eeefa8232384252932f62b4f4a384 +EBUILD transfac-3.2-r1.ebuild 999 BLAKE2B 58cbaa6a935993519549d6dfe768fa5f5a5a8eaf70ce0d42e03d3dcc72a25067a81f8b695a0a001f8c698f7132cda44a1761a975a081409a6edd8f8feae986b1 SHA512 7b3680b0fa6887ea1214f7f90e5bd979f8111f995e037fd0eb7ec8d129117bb5721c2aa185301ad0b57c2f83d2abf4bdc2d478be726d54ddd0d09ab8c969dc80 +MISC metadata.xml 696 BLAKE2B c4480adb945588e14915f75dd16a70db6a36793832241e103da6bd6e81aa00dfa20a6f2b2ba8344eba38dc986075279c1fc3c4287f00f567fa34e8d14b552157 SHA512 22cb9c39a7dbd3830cc64082657d8ab0b04b217f3540c912c1f06256e45a285ae9fa56a334ed5ccda2c58fa4a9407977c8f26906cb3e7000e3a69270dded6159 diff --git a/sci-biology/tree-puzzle/Manifest b/sci-biology/tree-puzzle/Manifest index 33758246557c..7790f82ac97a 100644 --- a/sci-biology/tree-puzzle/Manifest +++ b/sci-biology/tree-puzzle/Manifest @@ -1,6 +1,4 @@ -AUX tree-puzzle-impl-dec.patch 380 SHA256 0d0941cb6030e089e224a2390a28193ec848c4b2aabf021888292e41df1a1f50 SHA512 092743fff8a305a41ef55afde3e058c1892d9c608bd05cb87de38a451c2b9cafc7749825347d5c245f1c6b1e84cf9d28b63bd4e7389440da5604766412290110 WHIRLPOOL d12a213adb3aefff795814859c02d9e8ed925b37bae31ad95d39344c6bc6514c05a3d03ef080ac9b8e7aff33f3a55d637c79c8df754c3ba6105e430b88b58282 +AUX tree-puzzle-impl-dec.patch 380 BLAKE2B 22c00e2e0b4682a98212ec0b6e941ac37eff4cdeb8f684dc607e80a1617a35e209d23ac739af0e69af91deb8122fe04c3f9e7bdbd0c54edd8e603a817bdf0848 SHA512 092743fff8a305a41ef55afde3e058c1892d9c608bd05cb87de38a451c2b9cafc7749825347d5c245f1c6b1e84cf9d28b63bd4e7389440da5604766412290110 DIST tree-puzzle-5.2.tar.gz 875142 SHA256 3396d3b80b03b0600afb479dc33f0bd3e5631298337295a4fa454211ac44c3fb SHA512 5b9a729b120cba59f59ba426acd439cf396826ea01e75361b23387ccb9baf295d2512f21af96071a5f7b7507db4ff4d6b135cf6c5b6233a8b438532d31abe751 WHIRLPOOL 145afdfc266809638d7b049beb65cdfc8fb6c108ecba831ba36fae938d58edd141fdf1762d9ce86269f0098043e7314b0ddefaa5e7f9b11cc6fd56a480b54d61 -EBUILD tree-puzzle-5.2.ebuild 1355 SHA256 ce039a7b96e3715546fee972f598d1836bcd132ef417fd59e73e7d3071cb7527 SHA512 44c268b736aa1769c4b85170094d620bdd12798e8d194d4d991f5a2078641d29a19216bb733636052337b93863dec386b0cf2bc3544401059c566205d6d5fe7d WHIRLPOOL 9ff0e12d871e78efd79f2744d3ca3a16f564de758ddcf5e265439ed70cb9c868f65503c43a9a0f0668fe4baf91b5ddf9b5904db955d7a088f018e3e41688e98c -MISC ChangeLog 2473 SHA256 51b8e8509bc9e744a8f35bdd17615cce04f51e49757600adf2bd5ca0bbb16c8d SHA512 467af996c4275a463e6dd2bf035ff537973704bed42f7cbf27e8dcbe358431b9cba5e3761c67da55b27280e91abc48f5452d5c5876a7f90b56a8bc6f11a2bf32 WHIRLPOOL ad40efb66a62171b0be1f3f8415f587a7a99c1cf68ac08a190b84adf4e5266a381d680da21c25cf7371931597ab4e1fb01261945f6c1c41f2bd2ed734d5b4b55 -MISC ChangeLog-2015 3415 SHA256 73662fc7bcbd74f8b2da79455934d8b6b40267e0b403c92d33866f6ceb156bfe SHA512 f9547f4a6f63a55aa98c0703d269a222a4cea38b4c7ac32dfc9965467b14f4e0be0fd0e502cb33b003cd6099c44dfed1c1ab5a49f2bf31a1777890d644d6a0a3 WHIRLPOOL 76a2553e06efafdf9864d87a2a774b05d48b3d13f2ad50bbcc20cc1f4cc54f841e5c3c1af97f43b6d9e4a76c60f1852ec71604cb73379f99ba1b70db3b20bf6d -MISC metadata.xml 1555 SHA256 d67ff8bb601bd9dd1950082180043e1e7991b177d1cebca4798484a401377fca SHA512 d74b3243cb62071c16a1728cb14e4c226644b8116dc032ac2d74a928260a252334583d1867ec3663533f36fa1bb746270f1d33f6fb4bae220af86eba668307b8 WHIRLPOOL 44a04284aa8e3216f620fe8efa6c327fb1fc689d15ce2be88639db23d98dae76c8f14854c1b1eccb34430c83f49181fa2ac735ae840e8b3e809f77cc016eac0c +EBUILD tree-puzzle-5.2.ebuild 1355 BLAKE2B 4d9dd7728bc34b4481d9b63030618b343f6cdec04cf24670be81319c8a9e2e7f7ce42956797dc51da24e1e42e9e5dd7a20be018f027a04f38cb55b850d1c5a34 SHA512 44c268b736aa1769c4b85170094d620bdd12798e8d194d4d991f5a2078641d29a19216bb733636052337b93863dec386b0cf2bc3544401059c566205d6d5fe7d +MISC metadata.xml 1555 BLAKE2B afe1aecc51f612aad5b1fd991ba020fe15cf5336c0cd521330394ef486a786e088f8a85d0b89944f75557109c56409709e92d62bbde67f8f1f41ef015dcf3bc9 SHA512 d74b3243cb62071c16a1728cb14e4c226644b8116dc032ac2d74a928260a252334583d1867ec3663533f36fa1bb746270f1d33f6fb4bae220af86eba668307b8 diff --git a/sci-biology/treeviewx/Manifest b/sci-biology/treeviewx/Manifest index 815385d878f2..136242d4a873 100644 --- a/sci-biology/treeviewx/Manifest +++ b/sci-biology/treeviewx/Manifest @@ -1,13 +1,11 @@ -AUX treeviewx-0.5.1-70_choose_tree.patch 439 SHA256 99733776abfb7fe3db2ac3dcca5051e8f11f216442206cd7f49d4b7e910a584e SHA512 efe6e903929264359388f88288a95ea28d98efe1eb3dca6248801afa0ab44ee7afdf456f271d088f7b3231b1b9db58c5fde7b147c4ca76b5761d77a1139762bc WHIRLPOOL 9cbec22bfd967592808116ea374f7fac42089be17a56307c83e7b5076a9fa90caf1269a2c3356b8176064a50971dfdd61d0620028a16f3d1dcee5b48c0d6c12d -AUX treeviewx-0.5.1-fix_loading_crash.patch 951 SHA256 13cbf0f6f660fdd54a332aaa13c7ae0f4ee333a8288d98f52ce1a49cf91b2596 SHA512 9c205520dce7851520b24532f88348906c4d5a7f0fe392348099ee9f7377b778792170620856d533a275251a024756482bbd4b83d1da8281b84c39cdf2b3a711 WHIRLPOOL 4b2cd57d9c8f2b88f8075a04e5046865f5bd5a905d5d7c87d6f66dd10efd098926e69af33beea2071129c0fa233dc7477e84aded876beea44e1e7ca798190780 -AUX treeviewx-0.5.1-gcc4.3.patch 2601 SHA256 e2f0a1f1b3c53b61f61e6f8b6d820f37350573ca8ab35866f4cbe96cd654bb6a SHA512 4629ad00ca712163fccbdb029dbb42970d432b2bcaf6b6345a7bf3dca2331ab988742a6dfbc8874e2624988c699b4ba1fff8032dda53afcffbd8264df62b480b WHIRLPOOL 9cdec7b159f536c9599e30a936fcc7c0c51b7e002af851d2e8c734c69a809cf113cb7995c23b8940307ff89f0de205578e53c5266c1c6dd308c189ad14156c1a -AUX treeviewx-0.5.1-svg.patch 1181 SHA256 3d24052ca5ce8803970a4ea2541fe28238dcc499ea26f3ee32312c11e1508eab SHA512 d71ee136f4f47792ce98826d8f7bca18320f404937abd90cdacd2685f62ed28f48601a105dd1cfb9717891a8930be339b6a663b11784f305d03af0cba24b4c4f WHIRLPOOL 209d73dec82da1bb9241c343569c008009eed4fb1dfb1f51cdc3947b172f630c3e032698ef632242bd5589ab9424aec18d46251fb8e718200f3491e10f92d3dc -AUX treeviewx-0.5.1-treeview-xpm-not-xbm.patch 519 SHA256 1b7c1843f0fed0873198f4e0222eea54f7f98107424b6765bac01a2557207b81 SHA512 324b77dc43a99b55be45e1b561e528c8bb2f56ec4b1c7162987c848d0e6ea034efe262d910ee67fddcf0137b6eaeedfb50f26b8b2106b0459582942f5eccfbd4 WHIRLPOOL fc04a7caadea14ed129cb1d413947b19e9e669d68d33b80eee537694e4a740a2368e78e24c69e00ef4bbb0c0ab7954b7ff2314835fa9d83e8cff355ac4aacc77 -AUX treeviewx-0.5.1-wx30.patch 2211 SHA256 559153b17842ae169a7b4bc1e40b65c47a08be2b4606ba4643f52604480dcdd1 SHA512 0f1c05495badabba586d88a6fd0e3610b28dc5779c036d3da4956de6c5e02aabf1ef59e9aceffe85cc78ea582329965f6e228774ad6a944d91542e8bacb5daa6 WHIRLPOOL f38a42df082e385acb6be82515994e3a2665578f5b48d61c6ec826746ba24d33357f389c20793efc4ec5fa117cd5b4f140180ac8203d55593972d7d2899b90e7 -AUX treeviewx-0.5.1-wxstring-maxlen.patch 1438 SHA256 09ed71b70f84b2fbc484651d7ea7d1dcfe3c25b379d849f050d6cb42005afb0f SHA512 6e02ac59e8a28da8e94d5d6fdea71b3db9bc4501d9becf2d7aa6472d3f9f9b571fe68730390fd4cf6e1e422d618c21c40d86442d6b710e8395db107fc3445392 WHIRLPOOL 5fb9a8ef3467a3ae0d7efc8a75672326734d9cf7bcbc0198a79e126c4875390730cfeeefcdd71a8d1b8e28be581efd98976134d466da7ee1071806a158dc37eb -AUX treeviewx-wxt.patch 1854 SHA256 2881ec0a4644434320d284a4024f18cba765245de99fa7b50c3cc20ab7a37eb4 SHA512 35f9682bd8f17a2d2436ae6c0b729bcb766fd848b9b24e3f17577e4cef0cd6fd820a8686818feaf6e1414c0f10891bac0befa818a9befc337fd5e87f5120e520 WHIRLPOOL 6f91bd5ebdff8c4c32ff727bf57f2cc122d0034171704650e7263bc7da6cae798b1e4f023526063ecad01f6e69b9e995cdcbfea1478130c086909d2593fcc9e9 +AUX treeviewx-0.5.1-70_choose_tree.patch 439 BLAKE2B 5730b4f8b20ef4be14fbd4956100571cf9b26ef697834773095a3f11f2510466bc0c85582c31c1e2d0fd113ab4540db394831abb5891e4ff36c6c5a44a8f5a73 SHA512 efe6e903929264359388f88288a95ea28d98efe1eb3dca6248801afa0ab44ee7afdf456f271d088f7b3231b1b9db58c5fde7b147c4ca76b5761d77a1139762bc +AUX treeviewx-0.5.1-fix_loading_crash.patch 951 BLAKE2B 7fb391335a57114a9f8ee707ffe908839a064bbe6aeab05fe0b1af8928ccb0504d91ce9e25cc55a7762422f71978e28f1479adae11293249a8a67ce8536f8d05 SHA512 9c205520dce7851520b24532f88348906c4d5a7f0fe392348099ee9f7377b778792170620856d533a275251a024756482bbd4b83d1da8281b84c39cdf2b3a711 +AUX treeviewx-0.5.1-gcc4.3.patch 2601 BLAKE2B 740a3efb736389fa0de40b0f2344e2767450809547189ef6cf659b05b6d80954550b5d5688e03a904ce6f8ec45866dff174cda0dbdbee5b0baff8cef86992240 SHA512 4629ad00ca712163fccbdb029dbb42970d432b2bcaf6b6345a7bf3dca2331ab988742a6dfbc8874e2624988c699b4ba1fff8032dda53afcffbd8264df62b480b +AUX treeviewx-0.5.1-svg.patch 1181 BLAKE2B b647b33738af0a933d0a946aa15d02f67b87175c4845813e9f01578dad6a3052902cc946b2f13dfe19451595364094094e388d8838c6c67b1448f8a32a832a65 SHA512 d71ee136f4f47792ce98826d8f7bca18320f404937abd90cdacd2685f62ed28f48601a105dd1cfb9717891a8930be339b6a663b11784f305d03af0cba24b4c4f +AUX treeviewx-0.5.1-treeview-xpm-not-xbm.patch 519 BLAKE2B 33a73602f4da18a723e292b0903a695add936697fbfd29ef978267f5e2ae1e1aa6dd49754c21900fabaf6259f732d7531f4d571f85ee544bc3d18f99961a31d4 SHA512 324b77dc43a99b55be45e1b561e528c8bb2f56ec4b1c7162987c848d0e6ea034efe262d910ee67fddcf0137b6eaeedfb50f26b8b2106b0459582942f5eccfbd4 +AUX treeviewx-0.5.1-wx30.patch 2211 BLAKE2B a0327c8a4238d0ff3aa0f7e108dc6df85a9e025862e1a72bd80669bb11f692d7b3033f6f9fe8dab5464731658434ecfa56423cdf4c3d8ac2056abffe4298b929 SHA512 0f1c05495badabba586d88a6fd0e3610b28dc5779c036d3da4956de6c5e02aabf1ef59e9aceffe85cc78ea582329965f6e228774ad6a944d91542e8bacb5daa6 +AUX treeviewx-0.5.1-wxstring-maxlen.patch 1438 BLAKE2B a2dc6fe39c0312559628b61d86975a21db846e4c7cc3a0bb5739dd971417abd3ab9187ea56ef44d37c0394b28d4017981073eb4d890622d0d929f7a4d428950f SHA512 6e02ac59e8a28da8e94d5d6fdea71b3db9bc4501d9becf2d7aa6472d3f9f9b571fe68730390fd4cf6e1e422d618c21c40d86442d6b710e8395db107fc3445392 +AUX treeviewx-wxt.patch 1854 BLAKE2B 2b11d2395d6a2f8cde176feb04bcadca3c8fbd9ee3bc48fdb8f3d20c5d2f268fcf20f1f2f7bb9fe6263be2518610f2b87e2cdcf86d254185f81ada5484ef5248 SHA512 35f9682bd8f17a2d2436ae6c0b729bcb766fd848b9b24e3f17577e4cef0cd6fd820a8686818feaf6e1414c0f10891bac0befa818a9befc337fd5e87f5120e520 DIST tv-0.5.1.tar.gz 426745 SHA256 118bdbefb3f21636b1ba9da92e1b2029cb4d7d9944f4d02d2deace4ebb14c2d1 SHA512 45a7ac6dff5b22771e4428d6b1ee528c0039956a462658d28d4f588b6df32620d8f69b3bcf5ca23643e2bdd5361da00625fcb1495bcf4f74d44ee22022c63143 WHIRLPOOL 4f115c3a0e4d6ea6205eb4be76413965ed64a1562d8d9a53207cb64e2dce4caff57c430960b402228e1d6515c9797e69162594021c1cdee09028e671a3247c06 -EBUILD treeviewx-0.5.1-r3.ebuild 894 SHA256 06b570db06a8106db648a65e03de33c502e0666e58f798698637b1c358ecdcbf SHA512 316d9b8359813322cf77338aae8b7f687d4a40ca52cd70d739fbf76b28a188e45ac97d430b90fdec2b2c0e081de868cc3c842d0a94a56c8f3d0124eac058ffa9 WHIRLPOOL a7bb76e0a132592c3a5ce839803fc86e856bfa4097824617eeb6a42d44d520e47c937b4f2e3de39bdffb4daacb834e2d068b7695d6e193a3d592cbaec52bf745 -MISC ChangeLog 3679 SHA256 9a41d4a1f29f027e0b40043eef1fbab39342203e4da1c6cf70726b3a8a051aa6 SHA512 a727d6a1cc706c0f2d495a2c075d4e6a45df6565416d4cc96b734efcd5e8460627aeb97f77dfe53bc328f007cf59cd128fbe820f88d21e02e779aa45bd400b87 WHIRLPOOL b775f5acd10f5348c0b2c1d273b14c8ef478fe40029203a90e43edf0d22c8eb4bd7ce7eeaf481e91238fbf4513e198e0973190a45e8639c5e06361f5e9b69ea3 -MISC ChangeLog-2015 4158 SHA256 d48f59524159b132f37532f48ea6693065ad47173a85d21c8e000fecb1b02e79 SHA512 e17aaa41a46878fb7f267886c2121f5383daa3394be6a2b54b923c0885ec88a2053d7d9597fff543122bc6fb6c0da090091c84089d4afd0c20cc97e2d3653133 WHIRLPOOL 558942e59a9dabd02adf98f67a64ae64ff2ddd533301de8162ef4f92f0c03d04f0b171d7603ce6090fbfa5accefff374a68db20c69912c823ed03494daf45a9a -MISC metadata.xml 530 SHA256 b96f2ad648a5f6a4d238d759221c8340475acc74b367661f80e9fd59b725b482 SHA512 28c429150fb8df5db3205b352f077fe431f3e2ca530195468a340909a3b37882fae67e05452a7810ac34ffb8a02979625b48c28285a7d3abf31004238fce1463 WHIRLPOOL cb576bf37639acbedd4cf7b5bc4ee633e2da958d1a13c674cd29029b5352570791daf3faab3ba010df95499daca19d788d66ce3e621e2ed760ed5ab90b3133bd +EBUILD treeviewx-0.5.1-r3.ebuild 894 BLAKE2B 57111a7a18629dcfb207b2acd256db107324b4308240d55e656ca2eb9dea762b950109cf03e938ef09ef9d91ba2b101631871cfbdd4e72ee9ff0ce9bdac46614 SHA512 316d9b8359813322cf77338aae8b7f687d4a40ca52cd70d739fbf76b28a188e45ac97d430b90fdec2b2c0e081de868cc3c842d0a94a56c8f3d0124eac058ffa9 +MISC metadata.xml 530 BLAKE2B e28ef45f05b4ade77b26155b743afe8e72989065c4dba57b7a645e738366afff1d99c827dc1ea1f5cdb192ae2ef790be6de9a6905eeebd58e792e5d4e02b0dcb SHA512 28c429150fb8df5db3205b352f077fe431f3e2ca530195468a340909a3b37882fae67e05452a7810ac34ffb8a02979625b48c28285a7d3abf31004238fce1463 diff --git a/sci-biology/trf/Manifest b/sci-biology/trf/Manifest index 2f645f711eb3..c27789c0625c 100644 --- a/sci-biology/trf/Manifest +++ b/sci-biology/trf/Manifest @@ -1,5 +1,3 @@ DIST trf404.linux 89853 SHA256 1b9e3917088684afc2287a078810858f7a8e50d90e7bad2d814d40dc24188058 SHA512 c1aa05e394d47ea153df3082258f9a089aa59976963e9ac5d5816ef9dcd95c47e2e46861d1b2aae52b5ea9950a823a2449dd0d8426b04f2b738f5552c319393e WHIRLPOOL 7817c7eeb2c452ece7f71c2b7548fd9cda8c6796d5e77b2de46911f50bb271290b1a9601545efc50b94574c718e0e5e65d4a4e27f5cfd66c3590e9d5b7c5856c -EBUILD trf-4.04-r1.ebuild 623 SHA256 b346b25b99ffa5990102ab3a8c921404e4d6d7e424b59003050d7b2a88510c44 SHA512 a879d5171ebbb5fff9157d05c7f8413044758be60a5d4d790d779f65d3c8b16ac72a9a942f12f651576bd5082e1cb1171471f9886e5eba459903b473a7b07af1 WHIRLPOOL 512b7a588f8505d4742e88f89037322dcd0c3121069c6a688bf57aaea930c2bf64bd4202b26697c2a3893bb3d16c1d39b929dd0b5f803e35f6356fa10ef15a3b -MISC ChangeLog 2416 SHA256 411baa5e2565766402bbd39fd80dc884eb854a84b05b882356e4afc1d4f1de7e SHA512 bd45cbc13d034e66553ae70abfecc146ce49e56b3103590f1a24fcc045f5731c0f0b58ae3202a8d26254963a788406e09aff252006c33c86f5af456ff6f1f96f WHIRLPOOL 53a3cb4d34cb38d261a2d272a4e0beabc4933d0dd1fff16744e59b74f82c1c4cc6223cd2db24a70d7e6dd2e5fc27e792619b1fcb3dccb70798fac0faa786d64a -MISC ChangeLog-2015 1376 SHA256 87b6f967a822321f462017150f16dbb7d9f3219468eb193315fae628cc43bd46 SHA512 254398e6d9ca058c12a8e718afaec9485c673c9a7b9be8d3b51091b12bdd3921b1b550a41798bf9d9cc3ee4fb8250b46677c67e7f9b244ff3804e6f5ad619a7f WHIRLPOOL 0f33cef06dd3cc14921f74dc89e9ab5244fce5fdeb3d09bd2e7fee869f72c692b6e0f10ac8497caffb5adc3fb0518b06b727eee64c25fdd94bceaf82ecf70dd0 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD trf-4.04-r1.ebuild 623 BLAKE2B 10cf833dad7e73bb63485452cc6cf0f16517dc859eb37da8a366e5c877bf71469193527dccfc43d6fc090916b09e62eac04323a26a6bb57e6d611c2e201fc8e7 SHA512 a879d5171ebbb5fff9157d05c7f8413044758be60a5d4d790d779f65d3c8b16ac72a9a942f12f651576bd5082e1cb1171471f9886e5eba459903b473a7b07af1 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/trnascan-se/Manifest b/sci-biology/trnascan-se/Manifest index 718cc6e7c376..6d0d9618764d 100644 --- a/sci-biology/trnascan-se/Manifest +++ b/sci-biology/trnascan-se/Manifest @@ -1,6 +1,4 @@ -AUX trnascan-se-1.31-ldflags.patch 973 SHA256 e103841dfe3f289493c80fc938a3c9318a550e160b3269b9856405ee48dc648a SHA512 ff677ce9ac3ed9299f6a3bf977642e2a6c300a1b801436bb5d3787968cfe28357a0ec23d0438f0b15c06324cd7e1bbbda590c8fb5574577a3f653779316931df WHIRLPOOL 2ba11012cd414d2dc9a523109bfebe726a347558cf1098f52410fc88c652665e6babeaef5581dce12fdd1a83af8ed417d8040ef481d5036a9632838f997333c2 +AUX trnascan-se-1.31-ldflags.patch 973 BLAKE2B 1aeae4e2e5a513caea6eced215e891a42e3ed650d02cf68f3874e20bc5b6b833cb4041ee3cc8fb4fba774143e247908e68f53d4a2b65bd77c32f857366be9621 SHA512 ff677ce9ac3ed9299f6a3bf977642e2a6c300a1b801436bb5d3787968cfe28357a0ec23d0438f0b15c06324cd7e1bbbda590c8fb5574577a3f653779316931df DIST trnascan-se-1.31.tar.gz 740960 SHA256 862924d869453d1c111ba02f47d4cd86c7d6896ff5ec9e975f1858682282f316 SHA512 ba55bc8dfa7e5aee9c9a86c135a55b767cda083b74668bd9af4aaaeb693f9c3a17dc8bade5793de12b775564f09fbb861b0ab4f25bf83ccb0954fecd01bb328d WHIRLPOOL aef8b9f8d44799bac134a36af45374cdaba4b30c041e71e3095252aa8272fe9bd0aa76091211ac270ad609f67f388d577a83ec2ed2433997963fd5708c5b6665 -EBUILD trnascan-se-1.31.ebuild 1191 SHA256 f70623b4b41a9efe071bb98865a3eb1ecc67293f42371d32ed118c47c3fb6ebb SHA512 d79fa9d244d4f3ab98fff94aca074bd23cc953c0b812a270daca2e80c440fcdcfd38e92cba2eea6ccd2ad9873c8fb898f46b9f4356c638d01fa0f2b21e23c55b WHIRLPOOL 564cd24e354568dfcedf143fe6a60746ee282c334e6ee20fde196803cf57a237c52913be7be1ef559b0403bdb8676cc9bb3429e4f9f27dcd4b71b6c5c8f4527b -MISC ChangeLog 2630 SHA256 c56279b0e6cc8f7d84de536b5b3c6a8b152ead15a41f8a2927ef13a0691251e3 SHA512 d1a2dd013269faa1608f1015ff965ffe35c56df2001a6be7a64d6e5589c20dbf4e3b3732d3696e06ac08c78eb7933dd2736c293f5a591854375db76967524c2e WHIRLPOOL e25bad73167056904784b8b236615c58f1f2e107727265139147950600daf703ba2bd55453977f4cba2ae9fb416ef392625fa07ac25868664ccaefcf303b5673 -MISC ChangeLog-2015 2136 SHA256 c029d5251ef50292b150acebe84c985fc78797e026570389855ec6f5d48243a9 SHA512 5163d5de7b8962b0b744bf632db8cc3614970ae792c04d423f8a016c6757a8583053e05836fabb8dfb7bf2e78cba2d872fa18438689d2bcbbcaaedd9d7009472 WHIRLPOOL 90cc0c3fc4dcecb496558acb97b0e1c5f529c9dc4d1b05a2533991560b4d448927f945226b12f581b39bfbe05b86f068b3430368bfcb384e3384b499091a3b11 -MISC metadata.xml 608 SHA256 f64eaf62ed800ea168869df240fc649a3141d18509ca545d46577656a74d83cf SHA512 d94549c3878aa8a32f107bfe2cebb07e9965b61fe2cfa030211b98db2e98b2aad71e5e4e7fbeb97ba2767f6a0dc244992045da13560c2e3f3cad3044a86ef826 WHIRLPOOL d7bf3b4559c5082f7c5963c9b71fb4ca746fb5cf107b5f550478cd4fbeba763f1db2dd5fb645e5d18fe7ebd38e72fb66a26e9f43e25b6fb8052da7b74f59ca43 +EBUILD trnascan-se-1.31.ebuild 1191 BLAKE2B 8d492f11917a53e478d1f146bd55ee57b2c1ede4b1206fc419f86fd9acc1f73c30459b159836f8b0c946161cee16ba0cf0131d2635ce67708bd70c56c682f194 SHA512 d79fa9d244d4f3ab98fff94aca074bd23cc953c0b812a270daca2e80c440fcdcfd38e92cba2eea6ccd2ad9873c8fb898f46b9f4356c638d01fa0f2b21e23c55b +MISC metadata.xml 601 BLAKE2B 3da1b6ae272a5d072ed7b6c7a83ad54e1be9076d09ca4978838b6cb745146314c7161a98df7a6840bea65278b7ec525a1d5f3d35327afa44cfd202090df1df46 SHA512 36a89f38018a8beba2f9c299ac19774fc379e43ede78f8d120fd167139f42b2aadd2a4a4577051ea77bc74d7be6c4e23aeb1c3846a676d72780453f4f2db001c diff --git a/sci-biology/trnascan-se/metadata.xml b/sci-biology/trnascan-se/metadata.xml index ab96459c84db..39da31794ca8 100644 --- a/sci-biology/trnascan-se/metadata.xml +++ b/sci-biology/trnascan-se/metadata.xml @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription> tRNAscan-SE detects ~99% of eukaryotic nuclear or prokaryotic tRNA genes, with a false positive rate of less than one per 15 gigabases, and with a search speed of about 30 kb/second. It was implemented for diff --git a/sci-biology/uchime/Manifest b/sci-biology/uchime/Manifest index 8ff452aaf20e..4463a5984c6b 100644 --- a/sci-biology/uchime/Manifest +++ b/sci-biology/uchime/Manifest @@ -1,6 +1,4 @@ -AUX CMakeLists.txt 549 SHA256 56ab311986a4ebf20dc8a0929d0ab1820233c0a81e7802b40ee683cf64895031 SHA512 02b43fbfa0a8fd9e5389033e5a8b97d356dfc2d29d076539eea5830b30526745014bc1eab302ccb8fd27b65a1afd92537b94c3c266a4b285de1b7a287fa8a867 WHIRLPOOL 8fa3739e15061160c78174c43f8b029ba46c1f892e3bc5686f4dca306f72bcbc3f96acfedb670db5c8b11ab642740e26f58860a83c148a7b8e1bc11927943016 +AUX CMakeLists.txt 549 BLAKE2B 7c71a80c53bfa1e1c6a1726668866baf4e2b53b29abee4ef3f3c825cadaf8ceac0499c6a702054e9e9698a463ad04668b2a043b17d9cf587c61d8abf5c04076d SHA512 02b43fbfa0a8fd9e5389033e5a8b97d356dfc2d29d076539eea5830b30526745014bc1eab302ccb8fd27b65a1afd92537b94c3c266a4b285de1b7a287fa8a867 DIST uchime4.2.40_src.tar.gz 66772 SHA256 cb6a3aea4e8b4343a6e0ddde3b2755bbec53492bae5d6252ce8a7091061f353d SHA512 c3afecb23d164d9c3db6229f54faa13120ac4d88132d9aef707f8d043091099db4205ac80f60242920af6efc23813b3e7e4966d562bdb75ff53244fd525e656b WHIRLPOOL 28ad19892ac8b4db03e93fd1fca39b05d6675c241a97f7a2ab241765589b34c56684ab4923eaf568a5f9b0e1583ce1460be7f0edf9d9201e5d3db3da0efb0ee6 -EBUILD uchime-4.2.40.ebuild 500 SHA256 b727045e5b473bb10d9af55201c54c4197937fa8358aa7521fecd0af249fd5ea SHA512 5e5757f0fb4de458662828805fc8b2d63573a450c7b6f5249f05103061f6f577ea91d7ec1fdea6889c3690647c536f79b35894e9d99040e12e111c2436b4c258 WHIRLPOOL dfaa621a4459ab7f873bd405ac7bf29e84a4591ce88005fac1a0136e4a78146c620a6e175d165c174e0faf1f55024059499818d777d0bf1dc3a1718a26cf93ed -MISC ChangeLog 2632 SHA256 2e48d03b2b0907edd0bc919e11d69a7b631af489ba45be7e809ca79d3c3b5a3f SHA512 fd0d0ff3949449956cb3a283c6509913168470a8854595868bd8fb608e262bb858f4085fab84e29a6b73d6eaf9ce138142441b6403af29843afb7e8513bdab52 WHIRLPOOL ca525a6790d75da10a0a347aedf93be604ba6c38d6432bdb926490871eadb458c8e3915ca6ef69901508437a9f0332eceecca91686c84e2563a3063c77e78983 -MISC ChangeLog-2015 469 SHA256 616bb24f77f9c8e836e4752ee8f78c401dfd1e61127a94fdcab85c16747447e4 SHA512 f9cdd5ed5886021656d794f5299bafbd8719ea4b1c47dd2550df245827225f35613056923ea4f5ee33fe9add78ef2409be0ebbd0b953b86af75d89ee950314fa WHIRLPOOL df6ab45687bc4ed06d242530b3d0f325a6e3a1747f9a8b6bd66e76073ac38e699c9e98360292f4a3aa3c8817ecbdd07869d680fb355760da7ac1e4e593a67476 -MISC metadata.xml 896 SHA256 4952ea1a8c73ba8fa70e54b6e9f589efde2a9ffbb55d1cbab6199b954e875eb1 SHA512 641d91bff3651a49a3b7e15260cf2a758199ae49ece16643d3104f0f4e202938935edeb3bef18f7afc40a4eb1b1b3e469b07fec95d30a5e686e4b66535ff3e7e WHIRLPOOL 1994686e308ee6704205946dd8c3a7be908b941e21847d7098eac2f62ca2a511c3789f39a623950623fe54f15601217a8a3a5aacfaf36524ae4749e6cf0efa76 +EBUILD uchime-4.2.40.ebuild 500 BLAKE2B b971e082e7e03cacdc9f178ead195d4b2ae340eafd856cff2081faa0e6879522f1d1058f46bd330ea144394c4552860568d6cb7833c2b1c525b5b457b292fc40 SHA512 5e5757f0fb4de458662828805fc8b2d63573a450c7b6f5249f05103061f6f577ea91d7ec1fdea6889c3690647c536f79b35894e9d99040e12e111c2436b4c258 +MISC metadata.xml 896 BLAKE2B 1041ed416b2ba4670f85856ed2bfe1508d3bea0a310a29a9265b04372df51ee39090d76fa6a282c908e26541986bd10dd47ea73260d5180fe382fc97de556509 SHA512 641d91bff3651a49a3b7e15260cf2a758199ae49ece16643d3104f0f4e202938935edeb3bef18f7afc40a4eb1b1b3e469b07fec95d30a5e686e4b66535ff3e7e diff --git a/sci-biology/ucsc-genome-browser/Manifest b/sci-biology/ucsc-genome-browser/Manifest index 9b21e29f6f4b..ef4d803298d6 100644 --- a/sci-biology/ucsc-genome-browser/Manifest +++ b/sci-biology/ucsc-genome-browser/Manifest @@ -1,5 +1,3 @@ DIST jksrc.v260.zip 59090224 SHA256 ec28dad706f69a02f8d8fb56b9e3010f5e23b7880d717e58d9bb8d1e258fe7d1 SHA512 48aa964ab3ae456ab7e7ddc5d73b91774bd4892f21f1498578a5de38d3a07e4684778ddb1ac1ae389d5bbb3586f9b8506ca3697acca1f6777b85d343cf5d9485 WHIRLPOOL 669b0f342a97f84164b32707a3b2bb51f64219168beceb8f9d46211749351b2c65b21ffe830f82620e7112a332e88ca271d4327739d8f93afbe14e399e45e248 -EBUILD ucsc-genome-browser-260.ebuild 2920 SHA256 d88b2c78291cc64137193b4a300aae814b488721f6326f78c53f84948730b2e1 SHA512 4b9f58349249201f35454c99a1e1e35f3aa5bd4a1477fb534b8843bec52212768859b85c0e14aece50a02b2920c297ed96717d13a111583ed023f59b00481f7a WHIRLPOOL 92e470312ad45d04fbb09a780b72aec6b591e84b3b66c85b0c7716f4edfbfc823fd8a2500167ee4ab10d4e7dd4d1c877337aed2f2d876af9c1bb3843f8cce65c -MISC ChangeLog 2462 SHA256 f0197213b438d3f1ddd7a9c8933f488201638602b1b81edf833ef7c3374e3a92 SHA512 0bf627625bb844f013b3f15ee03bd151ea482e641def0a606f35c097763b7ee3bc95fd33d859921cc31b36b015f61282459bedbe8da487f361b5103ff985b426 WHIRLPOOL e22226d2842233abfaa4abcc7e6c937600cd77dd05a9fa85992360047b03736b73c67eff24fd8a04ae7272193421427ab5efad59a21deaa680bffac2f488d36a -MISC ChangeLog-2015 1543 SHA256 e4528cb56770a7989b4c681b2ca915691d1c4efde053d96bb152ed077ec5bbf8 SHA512 e4f17c85b1df30b7277271edc19409cd9062a64704023ff975ef51321428e3bdae035f1f5f487ebadfa1eef4fc6e3cae2aa788d57b68c27875e88465e7f1c6fc WHIRLPOOL fd8bceba956dd2506377ba6748f43a4fbbb753b35e7bd2397b0955a840b32b20a643d5f4498d2f05acc71094e51523f29f08c3b6e129eb9712fc7ac1791014eb -MISC metadata.xml 435 SHA256 937efe8e0861e55f1d8d4aa0d431e262657c10e3476041113f6561aee3290a59 SHA512 1acffee210c77abc41a93b5b78e52b27ed18df50a2eff3c6463e34bc031a4b2c97d1472a0dcf14bbf513c77d930a67434194c2e5ac435a5f7fd1e79294335a81 WHIRLPOOL 7601aae3dd7ebbc856edc983a0b2a38fe8687c52af40065fea816e09778be45311182468a72fd9078489ca49634d2e41263ada07b088ea626b577bb95bdaba31 +EBUILD ucsc-genome-browser-260.ebuild 2920 BLAKE2B c58ea503f59176f8a2a08851bc99658aff03f8375778a8e53a1c3840601fee7f63e4f39711aee4e5adcbe433192f2bfcf5a8c2a429a0b9d87f48bd63ac2ae3c3 SHA512 4b9f58349249201f35454c99a1e1e35f3aa5bd4a1477fb534b8843bec52212768859b85c0e14aece50a02b2920c297ed96717d13a111583ed023f59b00481f7a +MISC metadata.xml 435 BLAKE2B fb242aaf17920e320c65bbd8bf83c79ffc0a9e97c112e2e19f89ed9c0a3fd2e48e7444c81dd82bc30b38c1e9251737d93bea310f77ddff5a183301276588b1a3 SHA512 1acffee210c77abc41a93b5b78e52b27ed18df50a2eff3c6463e34bc031a4b2c97d1472a0dcf14bbf513c77d930a67434194c2e5ac435a5f7fd1e79294335a81 diff --git a/sci-biology/unafold/Manifest b/sci-biology/unafold/Manifest index ff0522bee054..05d16fc9cf92 100644 --- a/sci-biology/unafold/Manifest +++ b/sci-biology/unafold/Manifest @@ -1,5 +1,3 @@ DIST unafold-3.8.tar.bz2 282418 SHA256 7552724ce82ad8618167ec0524d8c931ac4383314669322c8424cafc06c2bf38 SHA512 4c83cf0122e4d4ec2b713833adb11eb608b0f880f5b68114aefd8c7fa980c8d02f9a6cfc0c88cd640b4457e65954b05189118e8ac5ed207b2f9910738ca71a6c WHIRLPOOL 9fd5744e66d8669817433b5427fc671ac5185760ffaf0682a7938fc5542f24cbe7b08f7722c7135cd3197af2d748740e0ca35a70a5f6c40a4a5d5aaa806ed923 -EBUILD unafold-3.8-r1.ebuild 589 SHA256 a0483fe9069ef4cde39ee2669da9f611996b4e3b6feeb0cec99529089c53b9e3 SHA512 4b025f8e4b52ef5e833d299973d44e5846000c45b7f36f200dc14414cb1367188f228e8fba23782f19475a38eb6f6d1cf8ca053b5d70f8b573aee69da7fc71b9 WHIRLPOOL ca9b77fa995b1fbdff8fa0db79db45b01690f7acc0e2e95885c0964b495da70f2cfadfcc6c352a55aed4134f601d167c664300ca0950f2eaf3818dc7422aa4ba -MISC ChangeLog 2480 SHA256 b82760c0782b0cf2d63fa7262ebc67acfebc94bafdf670ae0c3efa8a317f8d3d SHA512 52f440da912fd1ede230984fa5748085e20bebbf2e484e7f28b165e2ed7f4ea28895e557d1122e844ba3da7d9b754c29e4f334b8f6b1698b18090163dd4da194 WHIRLPOOL 920c020275a5767432eacbe749a6dda767944ea0ac896270ac7c0f0a207f800e5aef2ac131487b113d9f94ed9dc70005660226104af5de14e4fba92c9b397794 -MISC ChangeLog-2015 677 SHA256 affcd65b3c6d414a960ec6c4f7052f189add7c83da5f91623383cf15b3f8e607 SHA512 f0c77df86c9f95155c0fd724b0350a217d5dcf6c83aa7c0d273c39026ad321b7c57d018e7c33891482885c5d6d5d934a45063d542c29ef05c3a70762f20b432a WHIRLPOOL 0f2ea0014e9f678cb1c57e561c281f28be38504979b0b57b662e2bc3f24aeeb623dda839092b3d5ead9f72116850871a6947950526bda44cea79127b9c9fa241 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD unafold-3.8-r1.ebuild 589 BLAKE2B 345d178e5bdec00c1a6420b6b4d6598ffcb49474bd756b8a6dd50406fb1718969debeeeb27a2a804c53b6c518583e12499a0ca99d136b2bb47ffa559a87bd7e9 SHA512 4b025f8e4b52ef5e833d299973d44e5846000c45b7f36f200dc14414cb1367188f228e8fba23782f19475a38eb6f6d1cf8ca053b5d70f8b573aee69da7fc71b9 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/update-blastdb/Manifest b/sci-biology/update-blastdb/Manifest index 5fe3c3949c52..3a011e8b0ece 100644 --- a/sci-biology/update-blastdb/Manifest +++ b/sci-biology/update-blastdb/Manifest @@ -1,5 +1,3 @@ DIST ncbi_cxx--12_0_0.tar.gz 37925914 SHA256 432d5c72cc02dad263f1b2f1ab875e04e60b1ded0c5537ed54e8095b50554d20 SHA512 1a79f2d95960efde6263289814102499460ec235dad36337dd398d668665e44015e06e40fd0e66a8fb16f526d326949adcaadcb667debeba5d8570b1a92e30ed WHIRLPOOL 16f0b6de7e0d898bca7a2a46a64a4aa0795f99673d4715a21cca2dc5aa728143b56f02ad9c108543195a8f86f4267777d2be9428dcf52f5495083a63961ad867 -EBUILD update-blastdb-12.0.0.ebuild 654 SHA256 0ea57d56b043c576ad20fedad07c20d3d5b17bf59bde79ada412417c85fccda4 SHA512 3d83521ff73cb97d9f816b61e0aa30ceb690b4720d3486d1c377c9d4da7bb168d22e43d40ce3edd85dd1d7a8a133084734895223a0eb3ea5b7bf420d093ddb92 WHIRLPOOL 14613944758a6b804f37796e3981135ff4c019c883b3ef16fe969e00a25baa83173900d9e9c5b4ddb12dc0d4b2d53be728056110861ab98b4ff66abf4d267dad -MISC ChangeLog 2453 SHA256 1a72fe00f0710fba0dd3df19685c7cffb50c0555b96472b04fb87c5259c08275 SHA512 7a88c62355c13028c263b8d4ce99cb00158ccdaaa666ae3e8284ac730fa5719b26dd209510470fa239f34ddc2b0cecaf6e9d3d2f95ec26cd8c75a9f02b89d3d3 WHIRLPOOL 2ab5f494db68484509850cedb7ce39a455ed3f7d46b73e6dc06b12cf2da5821d1d0e4d440a32a89471cf8a7116b94cb0d6bd7f778bc6dbc80a667ebdcc06fbed -MISC ChangeLog-2015 476 SHA256 969c2b277431cccb691e1bdd9c12bda4e813e8e2382443d9b5358236873fe41e SHA512 c1aa3fac964852dcc95b4e33a5c1298e0d44d00e069cabe9db3332b32cede566f5c0e410c42af13f4b361a3e61ec4f52f35a2e7aad1f997f1ef91dc2810d37c6 WHIRLPOOL 33638cde2f1570032dea7c99395fced6a54db1e3336371419f1383e7ac41b50822ff5199f37abb98187b46486c99b13b43e8f2b904c6eaad746af64f01580a90 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD update-blastdb-12.0.0.ebuild 654 BLAKE2B 4a41a73d1047ae8cc8fdcb8f7eab348dc56ff8213b32fa4c55eeb4751496d342ceb8f1ca153b953abd3769290887afe65f60f1a9cf4525fa87218ddae533a588 SHA512 3d83521ff73cb97d9f816b61e0aa30ceb690b4720d3486d1c377c9d4da7bb168d22e43d40ce3edd85dd1d7a8a133084734895223a0eb3ea5b7bf420d093ddb92 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/vaal/Manifest b/sci-biology/vaal/Manifest index 077dc3dfa2a9..c1fad41386df 100644 --- a/sci-biology/vaal/Manifest +++ b/sci-biology/vaal/Manifest @@ -1,7 +1,5 @@ -AUX vaal-46233_remove-namespace-std.patch 23667 SHA256 24b54021fe8deb7655162779cbf0d9e9c6ab07dbca806b04085dcf9313d6db7c SHA512 47df9a497541d18d96ec6314288e8a429c1d71030f61f8bc29f1a95292f1f2bf53aedd88a16666c204f3bea051b7521ca13de6d03f52f78fcbc5d1cf24a76c47 WHIRLPOOL c5f868ec2041a9413a353ee89ce3346cd51df1b64920e69b92e61ddfc585a20bd7c53f7473605bb91560b544d5f3f81c8a5468dbc8f4df3555a35d8d50403485 +AUX vaal-46233_remove-namespace-std.patch 23667 BLAKE2B 1bb17133778df78969b7d5f84e05e2cb8aee9bde2205b1342a6bb6c551955ea4362b5a2d031d2b9b44879c5f343fdc5aa390a159ecf4c3c1c45387c9954ab66b SHA512 47df9a497541d18d96ec6314288e8a429c1d71030f61f8bc29f1a95292f1f2bf53aedd88a16666c204f3bea051b7521ca13de6d03f52f78fcbc5d1cf24a76c47 DIST VAAL_manual.doc 48128 SHA256 08b662105e8db41b33ea5d6626b58d5a5d793b1dd40fdc663a7068d9abacdc83 SHA512 4da21b6559659764e108c118773bd8ed365b67e3a22de52c7c13429979bb765e7f5d05955ce746a7a55e8d3a6baa752ad575289e71dfd7fb5b8b7207f5cff171 WHIRLPOOL 3a7432974921946e28cd037e47b79fd31631f7a7915a96589a8485b84a3296e1e7d8768e84f4f9086b2648e270f9f84f1e73261bb0b492b3fa7a6cc6fe36f175 DIST vaal-46233.tar.gz 1148052 SHA256 a1c27ae25583c1333c5169bb33a37cf461bc93b1c18c7e49f585c1cdc9e5a131 SHA512 7a6927d06e1788411063d38e446b7e3c93192e4322a33ea652855f72e550f35debcdb970b895f1fb8504411a54d9096f3dcf506faebd33d50eb033937e15a321 WHIRLPOOL e848bcd6b2dd0c0c52142a3d55acef6a98b816e37355d22386bf3a2fac21e1318a821a394ebd5851cd530aa9afb0d178debc3f74638ee0d0820209a0f432f59f -EBUILD vaal-46233-r2.ebuild 914 SHA256 745ad1ca1c2bc0c739f3f027cd64916f8bb9ac4d0a08ef841fa6cf68fa5117b9 SHA512 134814f2f2c6fe73a6bf31eb466b8f1736d583cf92518382a7e0e0e1b04620b4f8ce6680871b3c2a53e018e25912724113755aac46a1cc14d13b575477768844 WHIRLPOOL 0d2e7dbf8a9374effbc1b0a364bd555996571ab41d2680a5b39d1ed5cebf2648a5f3f939a4740f2efc4a60a7213aaa3f61267146d887fcbb062bc3ce3113208f -MISC ChangeLog 3374 SHA256 82ff9009dad0139bdbd1bd7545c7a6fab2aa6f7eace794716b9ea52eab4b29a6 SHA512 a3444503e92e518d42aa98b0a3a7b7da1834a87e06b5ee63d470513b646b6032b193082f423df34354060e97671ec96f3cf7649307cc73e2198aa618dcd60bc8 WHIRLPOOL 63ed0cef96e4a375aab84d7e402bb317c088bd9faa041ad1c271e59f3ea1b02f427955a38cef11ee2521d5931272ad56298fa811d61b1baf066499929bdd1487 -MISC ChangeLog-2015 2681 SHA256 3a7d489318b1bf9ba91a9efa3eb116011bf80c84b6c1e28544d3ed556e20490b SHA512 d508d48c7ed2f65219275f70720df978e3874b430b64aaed3833a6aae7821e0d5f3d5c0cc5478033cec30c533e3c6cfddbc1f5da48be797ce927ace0a70ed99d WHIRLPOOL 7e6ff98b96049a0cc09c72eb8a30f577257f26995351c3095dbe9d71f683466efeebde6bfd012b0d7d398e044c9f3187faf29f35f35dbba0624d3cc61cc029b4 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD vaal-46233-r2.ebuild 914 BLAKE2B e66a7c615dd8061306b9f298b51ae7be56eda58109f1f61dde76ef81dcb55571a3a8577347d127e6bc94d2801f796e24970bb09fb390d090763869fd9c64de2d SHA512 134814f2f2c6fe73a6bf31eb466b8f1736d583cf92518382a7e0e0e1b04620b4f8ce6680871b3c2a53e018e25912724113755aac46a1cc14d13b575477768844 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/vcftools/Manifest b/sci-biology/vcftools/Manifest index d364d949bf1d..88c2a01b3649 100644 --- a/sci-biology/vcftools/Manifest +++ b/sci-biology/vcftools/Manifest @@ -1,6 +1,4 @@ -AUX vcftools-0.1.14-buildsystem.patch 1159 SHA256 acb5156489d73a0b87785ad6717a781178844f3c063ba3c2b0b1a95fdc9cad7c SHA512 838cade29bbeeee090ea52f546c37b68eee868f3329ceccb710da0dbcf0f14e1b18dcc7b05ceefdbf72d400f450374389649f56fc6981bd86f6e176469b054ea WHIRLPOOL fa996b5909985075d00ae766bf070dbf15a214515aba56a0ac9f24a4f2116d94c6ae9b820d7f812bc6c75bf809f6b346276f04a49bc1ce0742e97db1889e8bdd +AUX vcftools-0.1.14-buildsystem.patch 1159 BLAKE2B 9eaa626c82b4d23e75f2d31ce31c6161996eb743efbdcb81ad4c3ba306b76a710c4b22670d68178da1b7d2e048d02aea44132f3009d5792dcf248368b53c3482 SHA512 838cade29bbeeee090ea52f546c37b68eee868f3329ceccb710da0dbcf0f14e1b18dcc7b05ceefdbf72d400f450374389649f56fc6981bd86f6e176469b054ea DIST vcftools-0.1.14.tar.gz 342369 SHA256 76d799dd9afcb12f1ed42a07bc2886cd1a989858a4d047f24d91dcf40f608582 SHA512 863a16b3b20d392deba7f04310af95f1ab21be537273692aa104e22d737af2eb1bc54a768af954f06188e0500e4f7a032d1189886eb3a439b108cb8189b14eb7 WHIRLPOOL 6de2e33a9882cb5567e2e22605a14851a7b1b458ec4152c87986ef8f49882e9af17e860f24ff40201905ca7d4a54bcfd4f8e8178509aca0bf65172d1c385d2c8 -EBUILD vcftools-0.1.14.ebuild 870 SHA256 fdaa68736705d831d6b6db0bf8dec04a19275d1d76911ed60171d437bf7292d8 SHA512 9b31b758a2fc70507b8060ca2aac6207e0fb3833426ba3f8bca63bff81952828f36c94b4a2e4b4476f8d9c8c0663b2b8ae437a7b50178c94e80b3d8a8b53b42c WHIRLPOOL 7cbc04995801a2fefc772eb8047fa4ebd156c78bceca82d965824953efd4dc6ca7cc784dcf97a0e5c7b0b121aabf76afa44431b7e349e3bee97b42eb7c8e633b -MISC ChangeLog 3285 SHA256 5dd2ff0b88fedb21fbcfe90795fe27f8eb3a03515fd3db6168b75f4d6cce20ee SHA512 5777485e6ecc739b2fe4cdc4240846b4af7391c9840f3a8ff417df62355eb45859388bd1d55225535fc09a5f3fe2a1d007d9f8f1fd217f7f26259c0f6813901a WHIRLPOOL 0ef204f5aa99e80ba880d1ed9fd499af546a981339b424e1fd5702e28617b1e38d417a878bc1b93d7cf1ed5f85cd40da4b16c84d15bc26afc731715d60be6a75 -MISC ChangeLog-2015 1487 SHA256 c87f01e46cefe44f2a84676c7e48130dc2ed8065437bb9a66b47336a9881c976 SHA512 f6bbb15623533764f13192f55fad78dcd41fdbb9eab73d4b089022471e0a001728285677d12a889443b83b370b768f617d84b4ca692105abdcc23ac9cb8e40de WHIRLPOOL e300a50ed4949b7051479e0a0b744b57e5cef5c3bf2c624d05a473c29749c394f1b3f8d9e50370dbb8143eb616fb4c1b9227a48c77aba0b0e68a6fd7d6e7b3d2 -MISC metadata.xml 408 SHA256 ac1e7a9c967f31f40fa6140b78c58360a82fda8735cdca29189804b77ea37c99 SHA512 637b53b7fc140cfde69bd0e39ee1e942a86a3fb77934946e942e12ca65cf01a8c3559d606ab3131ffc762aa3508fb3ab60148b4aaee28b60bc6d97cb8dd00f3e WHIRLPOOL 6a75268fb966ab0cc6e963a6cae542483372df05a1ff61726717655bff52ccdcf401c702f58b773608c40adeffe685c24189e80802aa8a818c8f9eca81a5ac8f +EBUILD vcftools-0.1.14.ebuild 870 BLAKE2B 8c428027293a1ee1560fadd2f79f4bc69dcc499d94d7ac0cc47a563f814061b1d01b4f028ac903dfbd48a3e7b1f41413a66b119868dec41f7c4c8227e3e1b46e SHA512 9b31b758a2fc70507b8060ca2aac6207e0fb3833426ba3f8bca63bff81952828f36c94b4a2e4b4476f8d9c8c0663b2b8ae437a7b50178c94e80b3d8a8b53b42c +MISC metadata.xml 408 BLAKE2B bc88536408660b74dbe9183850f853f19d123852d6e56845e9d6c5249f5fcff58e205751f70e8b22c9032eaea5d4ea9fac371376ce7725da151aacb8d6c7d5ea SHA512 637b53b7fc140cfde69bd0e39ee1e942a86a3fb77934946e942e12ca65cf01a8c3559d606ab3131ffc762aa3508fb3ab60148b4aaee28b60bc6d97cb8dd00f3e diff --git a/sci-biology/velvet/Manifest b/sci-biology/velvet/Manifest index 235f0e016e52..600c6776abbe 100644 --- a/sci-biology/velvet/Manifest +++ b/sci-biology/velvet/Manifest @@ -1,8 +1,6 @@ -AUX velvet-1.0.18-gentoo-r1.diff 7879 SHA256 5a177e3d0b027069aa44ce97d964ab7f8ab97561f00aa9c4485f110dafb6fa89 SHA512 7aa112850c1d83220e1545ef29aa3e445ce55bc4334d062c353a5c5681723a3492c8dec52aeb58cfb5d464d1c748b721dc6400509fa872a48c428a2e0f9cdbf0 WHIRLPOOL 2d1017fc91e9e8d9753f8d1a39af54c1ce4712ffb9932527d48c32d08e8ab8a82eba7dd767b3866935bbb0e2d2bf2af84a0e4d1cf3c15ea5ad42e1097d107dbc +AUX velvet-1.0.18-gentoo-r1.diff 7879 BLAKE2B a1aaa683c82d7c69669c815b2b3351ba115fddb600fe0eea46d2cc002b75b752565ed9e289c2f0143550e5ffcea13587bb8f8cb31227d38ed63a769da3b05b88 SHA512 7aa112850c1d83220e1545ef29aa3e445ce55bc4334d062c353a5c5681723a3492c8dec52aeb58cfb5d464d1c748b721dc6400509fa872a48c428a2e0f9cdbf0 DIST velvet_1.0.18.tgz 7598196 SHA256 e6e108ef16f6c5974617b195ce79c7d2860d335a5122418a883217b8cc48473e SHA512 6823265bae085df85513f29e0ac5f17951de4d39aa62bce205f1b1579e274c08047360f25f1936c89361281f66b8a4b755f611890a6a98c02751c74e69ae03ad WHIRLPOOL 69dcb5a6760b66eba65d054562e873d2c000dc57b487cdcf2c977bc1c0106bf027a79ff3b7e81da8a0f82b00635b755c26135b34de51cae34f4d276f15c2be74 DIST velvet_1.2.10.tgz 18818559 SHA256 884dd488c2d12f1f89cdc530a266af5d3106965f21ab9149e8cb5c633c977640 SHA512 a6f3e35cebceb22cc10e83088b8cd9758492da78866237cae63d8826d6f5cfb44d82dd8bfcb1185d37cd434d4c7a0f2ac7135bb80a51db86e754afd6156ea874 WHIRLPOOL 595e40c92ab5724b3e9a5af11f023307da7c66628b0c96d2ac2c89617e2aaa8a84279252c397f52d4603119d6fcb4995d2bf6e38f7de8c7c9616bde3aefdcd64 -EBUILD velvet-1.0.18-r1.ebuild 1504 SHA256 1e15fb473ab7efd9e868a3e45189dd3f5c509f8b8658f98dc55d7a5801b3db76 SHA512 fe13e66f7d8eab941ba7fcd900967a13bd1f7279a63068275be1bdbcbd29aa29d6acf8b29ac8b9690936d8e95440c8eaec88c99a2da40270654dee2a29748ac0 WHIRLPOOL a64ec7d69977ffc45adc02e4ba48772736ac2f3b68c38a8e6ff27bbe7a91173938cc4869d21460cb0bb904b18c0c0c29b77072ce87e1e41fe5a6b3da025e8157 -EBUILD velvet-1.2.10.ebuild 2104 SHA256 d3d8e0902340311529d7e4f02e3cd8d759a932337772314bd9f08ef53c007a05 SHA512 5176ce7dd9ff4f2bdd272333081a91e7e8441eedf49b5eb81ed0aaddddb21d60c02b1927168894cda0c48ae520b685d92446ccea28fbc151dc0a8aa61b6eabbc WHIRLPOOL 8c9f95415e7db3d135d628150e749410b9378c8ecc3334f4e0d3fc4afc53634ca68e262efdab89ae082c034de138bce1b7833f063ef8937b49a5a015f54ffcb2 -MISC ChangeLog 2560 SHA256 2fabc1318119d05f67c988e055f5ee7f3c5de0cdfe1a97eb423cc58470bd482e SHA512 8089c135b6bdb6a1655e868253a4dccc2967f844a4a341248e4ea8f3a53e11a0226abac9c9abc93dfe20720ea032a8f116b798dd463c4bdac800d48f95afe8ab WHIRLPOOL 36b70ef870cb8342bf3d61dbd96eeb746abea99e511c9457d5faa385faea8bf8df80f5787cb1f7ecf554d8bb9175d51830e6b387e656f42dc8f8bbb2f26ab1c2 -MISC ChangeLog-2015 3173 SHA256 90e96c969e46e9acf85c203b8cd7ea52a0c14f27d0e1dd60f9bd916dc961e4b9 SHA512 d02612119c5d9ccb76b54cc0dd9067a28751a6aeae4d08eb92cb9a8e24adee3a894d33151a1210e3afe99c3e29f96585a570f6a8c3b7e1258c628cec81cb0590 WHIRLPOOL 216bb10b145083d3eb8cd94ca5c6f982fc797022cdd1ec188725cc030d5cc720569f12d1d27754e5712f8c27ab68e45450035708fea89566426031731b1f4f79 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD velvet-1.0.18-r1.ebuild 1504 BLAKE2B f1d7be13ac57ab98eb3d74fc94d070e80b9d9e9422bf822bcada8c3417322df2956ca9c110b98b19d62ec6ebf2a309518062616c0e070e4c83de136737d8643f SHA512 fe13e66f7d8eab941ba7fcd900967a13bd1f7279a63068275be1bdbcbd29aa29d6acf8b29ac8b9690936d8e95440c8eaec88c99a2da40270654dee2a29748ac0 +EBUILD velvet-1.2.10.ebuild 2104 BLAKE2B 10cba35da08d85298fdfd8c0d5e34f9ab1edcf4c0ee9d938f958126cec002a66561ac843d21492688a19fc83fbe16beed9dc6405f1e7cc9bda3d7adc6c6b977e SHA512 5176ce7dd9ff4f2bdd272333081a91e7e8441eedf49b5eb81ed0aaddddb21d60c02b1927168894cda0c48ae520b685d92446ccea28fbc151dc0a8aa61b6eabbc +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/vienna-rna/Manifest b/sci-biology/vienna-rna/Manifest index a1c0d2db95c5..9f2323a9aa04 100644 --- a/sci-biology/vienna-rna/Manifest +++ b/sci-biology/vienna-rna/Manifest @@ -1,12 +1,10 @@ -AUX vienna-rna-2.1.1-bindir.patch 361 SHA256 cf5f393cb9ad1aba9e054d9ba7a0f876812ee88f2fa4d619ddc0b0ae2de3136a SHA512 f2e9da29f1ae3c1d3e7594367ef13ad0d44ebbcf1d9badf9d55c415e50b7e5af170dba7bcdad6438505786b941518f84ddb154cf1a6df60a229f3856cf333a94 WHIRLPOOL 5d28000ea19a6fbec28ff2a893ae77bc4ba0a70d74b5cb510a37d09563f278789379ee72e4aabc4facda873f6992ef707bd14732407547372174a1a4b9cccefc -AUX vienna-rna-2.1.1-impl-decl.patch 354 SHA256 9f9005092b060db501b51c37f215f9ca87da53720609ce971c3d9ad6bcf2ea39 SHA512 7c288b4889f11b5cc4e6db5b5db6dfcd70843aa135181e8d819ae86c90faed4a43e08f99b47f418caa23643642e68bf5e153f4d279f7566433af1c9093ec6e8b WHIRLPOOL 02ce683c58e4f5715ab75445d9efeb02c1c104a6faa25b19739dc43931f813d6c7637a6690026d18607da98f2f7a7185ffe3491c237d1f40dd09340dc44c651e -AUX vienna-rna-2.1.1-prll.patch 885 SHA256 0438173aa9d336ae41d7024d66dd6b07c1bac3c812750198ef0113e6a8407dee SHA512 1b80636b43e1ce9ca54431358b45f2503ef3f49b8cd049b5ef501058e1771bda3628c88e63cc1bea9a32aff5a004ccef663b47dae385a5df6071793f292dff94 WHIRLPOOL 6a0661741d7aa0f0461c7dbc68b2967e10f380cf8c42c699fe7ae568e48441bc0e726c2c49942af1f9f2557725de1545718fa66fa336de00f84ea1660b984898 -AUX vienna-rna-2.1.1-setup.py 810 SHA256 035f9c8aff6b6bc575b089e48e79bffe7da093de499a1d88eb1785346025940a SHA512 57feac6d5701a25fcda01f93f506a422d4639595a7d0ef73575af88f283fabc3730a8ea3e116ccfd417b015611c813f08ff047c9e362eaa74d2ce275ae65f8b8 WHIRLPOOL 8d9eb802bb055e30992a9509c43638e5602d434c5237729d816833f3e10f858ead48fb228728c5842a9e09b678f85091fab32b976ca8db4cc023c4fad2382b85 -AUX vienna-rna-2.1.8-bindir.patch 367 SHA256 44f43ad3cec8e05107c67f6f8420573a8f85ee80c4ac62abd6c7166192b6ecfc SHA512 aee16e7ff546aff38dd4a29d43502f4eb50778e6377a7d57f6a010dacc6a5f02162418fde27df03d1ba27f02361835d63dcefd866b8ac22f17a926c28fa4e9bf WHIRLPOOL a74ee28add9902d2a4c3219fef94d85c96934d7b113b69b3a09faa8d104c0d83d50fcea953a3073a48958f5d6e94d075697b2ceade3b21b236a2882aab4843fa +AUX vienna-rna-2.1.1-bindir.patch 361 BLAKE2B c05d660b422519274f3c88c922d9eac79a8af055df17b78ecfd13561e76f02820d0bdc0462b66100858a8e6b1f3f8bba41cacbc142b9684e47aeb11295edef93 SHA512 f2e9da29f1ae3c1d3e7594367ef13ad0d44ebbcf1d9badf9d55c415e50b7e5af170dba7bcdad6438505786b941518f84ddb154cf1a6df60a229f3856cf333a94 +AUX vienna-rna-2.1.1-impl-decl.patch 354 BLAKE2B d9d7a4e749a2c8681dc619961291f5e082681f15729a72ee1423bc4af71e8f745a558506e7147846c84df8fb7e5d316d1bc253f8125487a4ea6aab3c05b19bd8 SHA512 7c288b4889f11b5cc4e6db5b5db6dfcd70843aa135181e8d819ae86c90faed4a43e08f99b47f418caa23643642e68bf5e153f4d279f7566433af1c9093ec6e8b +AUX vienna-rna-2.1.1-prll.patch 885 BLAKE2B 168d4b1a4c5ff0eb92379fe5762e7f0d6b7676c774c659422923c894bfcdb9efbbe20979ed87129c688b6ced9ad19cc51716164a0056b19fbc80fc27bbd32d57 SHA512 1b80636b43e1ce9ca54431358b45f2503ef3f49b8cd049b5ef501058e1771bda3628c88e63cc1bea9a32aff5a004ccef663b47dae385a5df6071793f292dff94 +AUX vienna-rna-2.1.1-setup.py 810 BLAKE2B 7db99496739eaf21a8964d8a545204c05026ae6e5de1070d14e820e64760ffb2544a2a0247543415cc909d8938ac423be7d57dddd68103e3d9cc007ac7db7833 SHA512 57feac6d5701a25fcda01f93f506a422d4639595a7d0ef73575af88f283fabc3730a8ea3e116ccfd417b015611c813f08ff047c9e362eaa74d2ce275ae65f8b8 +AUX vienna-rna-2.1.8-bindir.patch 367 BLAKE2B 9bf3df6c604d5ac0661188d4f662ee12387f8bb30c2e3ecbd4a7bfd0a73ff5419f7a10b2fe70efd53e4b634bfdd3c1039ec000b26e7f5edbbcc4242a4edf5914 SHA512 aee16e7ff546aff38dd4a29d43502f4eb50778e6377a7d57f6a010dacc6a5f02162418fde27df03d1ba27f02361835d63dcefd866b8ac22f17a926c28fa4e9bf DIST ViennaRNA-2.1.1.tar.gz 5327215 SHA256 bfea440dface4562d5dfb0a1c83bf226c0697bb18aacae0dc84c555282cedebe SHA512 b272afa1146543b290db605debab2badbdbf04fcdfd6130ed3b10604255476b3472b184e9af8a0bbeaa0def266f1a167c125d6cfd02aa3f7ae463697dc5226d5 WHIRLPOOL 48b6bcd96b2ff2523ba00335cac7fe141b6ed7f037a3192e6c174297266d0f967492a67afaaa6c05f8b28fdc0eb7c9b72d0d9daba286b5dd3dca4456cc058b1f DIST ViennaRNA-2.1.8.tar.gz 5464683 SHA256 37a0a0b7c8a167bcdab1a85d88bcb1025ad8e00a4b00a147bf36d45dc8ca7560 SHA512 84f9db1247ff7a77aa6550b6285d9bed31fa6ce179aab26eef798c65a07f5cbd89f944630dfa5d29a43401b12a439324b57ee69047a3985e3a4f1e88dffca60e WHIRLPOOL a79f30d49c9bbe047d9fe83054dc08e94535f17417ef1f412bbcdd374d1988a8f2faf679e154c1ed1d1a75799e6cc0232d30b3adf65b3fa19978322f67ace57e -EBUILD vienna-rna-2.1.1.ebuild 2667 SHA256 9f6008c2895d9b6588e3305ee324906ab7d0e04f92947c59710335b0e7b29d56 SHA512 22b96fce6750fd8094e6943abd8085ec5e3035f66766f56a6a840f591faaebbffece2b0174e7db078d4e96bae30762bc6d15e21bc2e45a6e086115ddb2ca4bc1 WHIRLPOOL 18416ab6427db4f63a89c64c50bf2f8c4c78a4bf266907006707e3b045d240115c3777dce226e305b13dab895333851fb716c580701baa02777c28c1ed5772c5 -EBUILD vienna-rna-2.1.8.ebuild 2588 SHA256 9e2ef28f2b8020524fa9b29b07b4988a8977d961ceaa397979ffd8adc02045c8 SHA512 4474f2bf042a31e02fd7b9882f6b5ec17fef4ba9f23eab29a39e9c09ea29414e836c029e568a905a2c315370c763384f9d84547a56a8806216dc825d51c3d378 WHIRLPOOL 0adeaaf4815be6b2c2f2b3f6a1b5e5ce6e67abe2cc38e48f49e2308670d5d6793e0358d5aa16a3443b283bea7041f78a2f40cb7e775e28c885b82529a97bd9c4 -MISC ChangeLog 3325 SHA256 5216a998d8538cee5696af5084bfa0aa5f77b3a094e83d7ccae8e46ec7f7bf8c SHA512 77246295b10a7d717b4a335f837fc2ec28468eb2dd996d6c1efb724a11e32f47c905a4216cf2f00a0333f5c760eddbb463ed5710d3f5b92cb3d7c6e3d782356b WHIRLPOOL 295dc20d4686d5e6297ad203d4222423f222de9cc0d101296ed26b122ca8728ed2787503a91f85424608eb8fcc28aed1c3313e42da93bebdd5610b5608f8f87c -MISC ChangeLog-2015 8565 SHA256 523813579b1e0c6beebf4e9aba734bc303dd41d88d0c57b936349cd3e4c185aa SHA512 b9f29ac13ca0774fbf2ea981876b04d07f2c7f8b5b601a507a64c90d1fea5c7b43eeb18a210588524f19e950437b7d3410ceecd877b9373ef7ab83e575a8b8ee WHIRLPOOL 83f012a519a5c50a310fcae41ffcb4a86db6b9212527b44a6d85c062adce90281820ce07caf2c8ae8a42248ece67f5fc791065dae9355c8952afe2a98d7ac196 -MISC metadata.xml 1315 SHA256 5afca47f48661e11afe2649369997eef235bb1224c0632912a3f43bcd37b53f5 SHA512 5aa9cb8fb220b9d6b0ca7c0a32a26eae6eb5e8585eb73a6668ef28821196617247c8dbe0dba5f10b76d0d5a3a86b1430e3d4616ff084fcd09fa108481e08068e WHIRLPOOL 3345b4e2f80c72ac38bb93cc4d12802dfcc2a0445847bf5b4e0858740aec95fdd13247796a85392ccb3fd47e4b5740b0b28233ae3d508435bfb14f3082583736 +EBUILD vienna-rna-2.1.1.ebuild 2667 BLAKE2B f81e3a8fd09cc846b570831ee21081e246163cfa36990a42c1e582b47adb8f59b137bd656277ed1b990a0fdddbfbc67e6c49d22a896c78842362bd1e16eaab0d SHA512 22b96fce6750fd8094e6943abd8085ec5e3035f66766f56a6a840f591faaebbffece2b0174e7db078d4e96bae30762bc6d15e21bc2e45a6e086115ddb2ca4bc1 +EBUILD vienna-rna-2.1.8.ebuild 2588 BLAKE2B 5a1692be0a587cc85dcf0a60c609ff0c4eade92e5da98ce05bf2d90a195e606d9ca9262774c2c6875b1d9d53451b5043d7c4ae8a3446d4ebf3607effe039cd92 SHA512 4474f2bf042a31e02fd7b9882f6b5ec17fef4ba9f23eab29a39e9c09ea29414e836c029e568a905a2c315370c763384f9d84547a56a8806216dc825d51c3d378 +MISC metadata.xml 1324 BLAKE2B ba9d5e1f5893344fd1899e3723e1b86bac75546cde97b311fe7ef9dc2068f1a063cd5a5d2ac65d1195f532441194e8943ad2ec44db9a5c614ed0c8d894a900bb SHA512 8198db695aea5244b62fab23fd0a53a0657f8d37cc741f60869a39374e97c725b564086d852e37216c584083168881eba246f59b840d6a41bfe9246d3bd88d4b diff --git a/sci-biology/vienna-rna/metadata.xml b/sci-biology/vienna-rna/metadata.xml index 861e9e38c31c..bbc3d41fb4a6 100644 --- a/sci-biology/vienna-rna/metadata.xml +++ b/sci-biology/vienna-rna/metadata.xml @@ -1,25 +1,25 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription> - The Vienna RNA Package consists of a C code library and several - stand-alone programs for the prediction and comparison of RNA secondary - structures. RNA secondary structure prediction through energy - minimization is the most used function in the package. We provide three - kinds of dynamic programming algorithms for structure prediction: the - minimum free energy algorithm of (Zuker and Stiegler 1981) which yields a - single optimal structure, the partition function algorithm of - (McCaskill 1990) which calculates base pair probabilities in the - thermodynamic ensemble, and the suboptimal folding algorithm of - (Wuchty et.al 1999) which generates all suboptimal structures within a - given energy range of the optimal energy. For secondary structure - comparison, the package contains several measures of distance - (dissimilarities) using either string alignment or tree-editing - (Shapiro and Zhang 1990). Finally, we provide an algorithm to design - sequences with a predefined structure (inverse folding). -</longdescription> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription> + The Vienna RNA Package consists of a C code library and several + stand-alone programs for the prediction and comparison of RNA secondary + structures. RNA secondary structure prediction through energy + minimization is the most used function in the package. We provide three + kinds of dynamic programming algorithms for structure prediction: the + minimum free energy algorithm of (Zuker and Stiegler 1981) which yields a + single optimal structure, the partition function algorithm of + (McCaskill 1990) which calculates base pair probabilities in the + thermodynamic ensemble, and the suboptimal folding algorithm of + (Wuchty et.al 1999) which generates all suboptimal structures within a + given energy range of the optimal energy. For secondary structure + comparison, the package contains several measures of distance + (dissimilarities) using either string alignment or tree-editing + (Shapiro and Zhang 1990). Finally, we provide an algorithm to design + sequences with a predefined structure (inverse folding). + </longdescription> </pkgmetadata> diff --git a/sci-biology/wgs-assembler/Manifest b/sci-biology/wgs-assembler/Manifest index 3767df9eb177..67893c4cf2bc 100644 --- a/sci-biology/wgs-assembler/Manifest +++ b/sci-biology/wgs-assembler/Manifest @@ -1,6 +1,4 @@ -AUX wgs-assembler-7.0-build.patch 10279 SHA256 23c0a916b3af24f4c12fd2c40f5e7c1559749ddf3d29f1f06c89dd27ff0fd462 SHA512 77e432319cb279d188ab74edda822f6b4dda127f1e5f1d75febb6fe0533b66d5bfd066781f1ff5d4d0d8f832c491d31ec470653b9c36b29d8280b5786783c5b9 WHIRLPOOL c964cc3b3b9394251b2701d8cdb8373184509a4ee62faa44cad5df11d0dff90ab03224d2538c888414cadeaac09a512128262e66791d3b4146c2d072d7f21052 +AUX wgs-assembler-7.0-build.patch 10279 BLAKE2B 9fd4a113d4ea3b07570c39e32892b535a0ed7d0e958602ca891c75fa3aa73a44d205fe43580e43d98cdafa1d431c12f68d5fe55e52aca82e451d5aae3ea2c551 SHA512 77e432319cb279d188ab74edda822f6b4dda127f1e5f1d75febb6fe0533b66d5bfd066781f1ff5d4d0d8f832c491d31ec470653b9c36b29d8280b5786783c5b9 DIST wgs-7.0.tar.bz2 1952253 SHA256 fee425cf2ec6aec6e98d580cc7e43b53eb37abd7ca14e3edc1f953d2c09b3a6c SHA512 e5ef1d4533e3dd17d13c6aca9631f5300768a258f8241f3f7f90de3785bf7a340b6896febe335682c282434c9983bc4a02fe2128a5b0e7ec415dd65e0fe400ba WHIRLPOOL a158b882e51e8ff80fa4e6bcbe4322125fce65fc64900407882a728de9465b778f59cc6d543142ca65a255295e66e89e5303774eeef7a66362c5f492ae99a92b -EBUILD wgs-assembler-7.0-r1.ebuild 1597 SHA256 6473cee0ef880fe8e7daf1809b0b018d20f954c0a77f9e534ae92da575cd0f3a SHA512 d874b917c4b86cfb56681473c4c99ec38bd9a681b7e0832a0e9240f2a1c20a754be30316ca4b64f579cbd8c3bb50cad18e874664f5e51e41194e6941088bcb86 WHIRLPOOL f257b4ff26490cab0e3e233438ca1cafb1be11204c0a38f28fea7ea8638928179a3ee97e18b6f71ffcfc4be5866ab5c3c4d79a3eb6c4cfefd555203f1802329e -MISC ChangeLog 2873 SHA256 1b44aed33035cb6bcaddfe9cf4f13bab73c82508e798f5703d8c57e2712912db SHA512 cfbe4601cce21311cd4a8343de00343506bf9168ca33042f86ef2626f6b411e0d2b9078a8fba2bc52137e8f3d0795f998a0c109d3974d0298fc0ff9095fc890b WHIRLPOOL 2b25fbf95083f85d51133edbffb4b869fec45a927fafa7e7beba3f1032909c136cdd3b9c0293cf52515ad7a7526d42bf61680be500e4d5ee7020690298428476 -MISC ChangeLog-2015 2127 SHA256 92fa1def396841cb4e895cc59a0a8351099efe39b3432ef034dae491bb4cd4ff SHA512 8dc7f0416773cf810ec1a5315045829322ba4887e2b0714965d8859cf1a847fa9fb37b7f5102aaec7b4e19f63f18df2ac50e8503aabb37287cce29f8f9ddfcd1 WHIRLPOOL 9429ff376104ae8b2e219a93fa99d6ec52b39e7994ca464dc7ae72e4d6ede9110168769b1a919591bce14d3c12864ec75da2da2415129d6aebc6effd2325680a -MISC metadata.xml 354 SHA256 e40bc21a4b4606897765d8a7e17d05d00513d64cf8b25294587150134d5e9b7b SHA512 b46f437eb224dbc7d7cec21941565ab48055f1d7b787fae7e66b135a8abeff0ea55dc191643d1e5f6212012001d98e4b7e8a7a655c9a66c9f3124bf7e700e193 WHIRLPOOL e654a2c11f819f97f8359a0cf8e57b651c45490146287954f84aaadad81a76be7fa08122b70442111c28111b6aa29a5986b3fc802ab048c9cc9ca9f955b688ea +EBUILD wgs-assembler-7.0-r1.ebuild 1597 BLAKE2B 046fee583f335d5554069c0b9d489af94fa78d98b9d41cfbee518ff124e06c0f603afb6494c50bb6958f6f92c63957e6fefc6357eb358a950a71db8396753c07 SHA512 d874b917c4b86cfb56681473c4c99ec38bd9a681b7e0832a0e9240f2a1c20a754be30316ca4b64f579cbd8c3bb50cad18e874664f5e51e41194e6941088bcb86 +MISC metadata.xml 354 BLAKE2B eaf844f74ea3b2a51cba2f00ebc0a3cc895312e04a995000e93426fa0e2f9d8601edb2011ff6c837f85b3a5755b819dc7ce517d3787c2e7bd37e097e144fb156 SHA512 b46f437eb224dbc7d7cec21941565ab48055f1d7b787fae7e66b135a8abeff0ea55dc191643d1e5f6212012001d98e4b7e8a7a655c9a66c9f3124bf7e700e193 diff --git a/sci-biology/wise/Manifest b/sci-biology/wise/Manifest index e3d179c6a9f9..e776c86aceee 100644 --- a/sci-biology/wise/Manifest +++ b/sci-biology/wise/Manifest @@ -1,9 +1,7 @@ -AUX wise-2.4.0_alpha-cflags.patch 27241 SHA256 281c95e7f37f217a9bd730ba4d80640a6085dc134fb3dcd837f217b36f5b5b87 SHA512 2f4faaff8198c63fb22edde934584fa2d00d2a333c5caefbbbc569e6136546aa274060453f093e0791a4d61bc901e1f199c47bb60d1be9f0ac32b3709cb025ab WHIRLPOOL 2b48020dde9e0f19a3ff32f2db6d0d08ea5626e0f11eb8560c23160ae716fa55ac3a2946bcfb6e90c018db98df7ee38eb66f44acef6828d29f67d00fbd9f58d6 -AUX wise-2.4.0_alpha-glibc-2.10.patch 8068 SHA256 caaacdde33b1f0b12aa0854fa27e3b2c4d6bab099dbc627e18057609763ce265 SHA512 eba50ed8e12ca94d026fed95602ec1d1683ea26f0195952304a1caebdb94df700b547168a6da4a9ad4289dd9c6060572b4ed9dcfcc7698dff2812765adc556e1 WHIRLPOOL 38228826603523ab1d5d31b02e57016e128788d3767820f6a2efb79234f01e6ffec63480430c5ec7cf21ea24351aece8ad0303ea7ec0aacfa4868989bb4a82dd -AUX wise-api.tex.patch 2234 SHA256 31042f660669ea9df9bc608006cd40479e004f5cbb9aed055d3ec58a853c145d SHA512 1cb7b5f5377d4d235707d32d74087598db5abc793b2aba8272a7da941a25d5618691212240eb25c078df39868ea7adfacfba3d218bd77fcea5d57b3b2ef51a0b WHIRLPOOL 523d0b0fa7c97669ca1e4e2229bb432ebe1002d7d0249064217591b0c542d4fc6171e5e924bd650c71d46e02d4c180b2763d1b1f1d87b077a55cbf1e53e3c6ac -AUX wise-env 40 SHA256 de6f742147c43b3820ea261fd158647ae1d2d9e8fe562e0b5c4c0d7e878ced36 SHA512 58cfa40d4d3b2623df82bb321f8dd2f5ebbee099ccfd4ac0e3eb9edf5693dbaee0581f8986b4923c60060d92c028e731f15c047e18f86efb76adaf4ec386e96c WHIRLPOOL 62228e902a0b962ad13514b76a2fe52eb3d6626c7536d63c3425c1e11abed08f4c9e971b7d30b78950e3ba0fbf5e020cd6286148419692f5c6d93876e0e6a8eb +AUX wise-2.4.0_alpha-cflags.patch 27241 BLAKE2B 940d7e8309fcca65ebd395465d1f82975f86b24cb882bb3e303c40e36cc8322a83efaa38596b10ffea46fbc8765dd91907201bd283f8f2a36ef8de11abda0f24 SHA512 2f4faaff8198c63fb22edde934584fa2d00d2a333c5caefbbbc569e6136546aa274060453f093e0791a4d61bc901e1f199c47bb60d1be9f0ac32b3709cb025ab +AUX wise-2.4.0_alpha-glibc-2.10.patch 8068 BLAKE2B dd36c52033fa72c14f06b9421392c6d98609206d02c449f18e32dc7d2a8cf213e9edea85c1c58e57ffa9ddd82d19e1bf26f2b21a8a0572640f3a51da0aaa7d6e SHA512 eba50ed8e12ca94d026fed95602ec1d1683ea26f0195952304a1caebdb94df700b547168a6da4a9ad4289dd9c6060572b4ed9dcfcc7698dff2812765adc556e1 +AUX wise-api.tex.patch 2234 BLAKE2B 79bf7d6ea125456de2df26fe2a9198e97b0603baa7b40eb9e70e66186e3b445113b5ebf160bd7c05c83910a07dec55a6cc1d953d98d28a67e97fe46fde20a4f2 SHA512 1cb7b5f5377d4d235707d32d74087598db5abc793b2aba8272a7da941a25d5618691212240eb25c078df39868ea7adfacfba3d218bd77fcea5d57b3b2ef51a0b +AUX wise-env 40 BLAKE2B 595ad1009800c96dc304f055547b066953ae008958e228e0469e5cff29682051dc5704ba541b152df0a72ac0ea0be0b7bf392c228c6cbbfa9d02ff737c770332 SHA512 58cfa40d4d3b2623df82bb321f8dd2f5ebbee099ccfd4ac0e3eb9edf5693dbaee0581f8986b4923c60060d92c028e731f15c047e18f86efb76adaf4ec386e96c DIST wise2.4.0alpha.tar.gz 3296399 SHA256 6ec8be1ea6f0559d8a2659fe9c0626408fa2b3e327cae345d0e48bb971531853 SHA512 a2288d7304e7768328689514a986aeff62a0ca6538ee61177a434fb08065f83ab5db39e0cb9101dd8ae9a91f7d95d05528d7ad23df0c394587717c584bf2341c WHIRLPOOL cb6b34dc7d6b758d83a97af491e803230f8dfbd0d0600600fc4c2513b9450d7b6da988d5d584bf9db6193f938df59899e49f2a4e26d5f29c5e089a741d00f6ec -EBUILD wise-2.4.0_alpha.ebuild 1629 SHA256 9121d9c9acb7ea103e742070a9f22985e403fe28b688ec9335cabe678a7f0a7f SHA512 cf1b57b1d14396ed4da12a1f24932a6a6e43a5e4eb61642bc40906eea4dbc57c58c0c4daac29122744b8c54b5f434e5f49d964d3fbc05b60dac6cd02514f2f43 WHIRLPOOL 74e6990628fd9935a8399ff16dc64bee300e4873e77fb8525fdc360d207269e2811d4927e2cdda49fc1cd135a09cc00c6a49b6a532b2b441cf5025b51e2d0e96 -MISC ChangeLog 2597 SHA256 482a2dc882cc4a7b5fef4dd2bd14004ace6c42181c95a33246254f8f679581fa SHA512 725a0ee890e65febdcff9b5b2f5d8b298988633efa472b10dd3918cc6fa0b8ea2237b8bad7fa15409a1accd28d861e272aa67480f8ba2b8a2d6c90fa915713d9 WHIRLPOOL 2cd895b442a4f6009a48283819958fb985768e901094ea826821050a39fad2711c45f5c82daef709e9b69c238a80b840cac976f438388cc5a0e3e32c80334c84 -MISC ChangeLog-2015 2958 SHA256 89da20b9ff628f1582a29544932a00af4f071b41d49c6dcc12fae19465544ac2 SHA512 6342c0e4b676dca1698bae42a470d0f931528791cb6a77b239609c74986b2e80574e6372308d1aef91bb23221d7719a052079bb51b5196c24f90fa89cb75141f WHIRLPOOL 9e22b0b177da5773f6f0be267ea8642c64ac49c0be1167a7896054866ec5d596f879b915229fefd6a934e636629ce7a145b3995758bb9635e3814af7ed2449e1 -MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13 +EBUILD wise-2.4.0_alpha.ebuild 1629 BLAKE2B bdcd19bfc794df1bf5405ccd604fb68662bc0c22cdfacf039f9de2501708493967e58020e56c3047d189966669ee47f8d2b30ae2db3d059748e0fded38b5fdf3 SHA512 cf1b57b1d14396ed4da12a1f24932a6a6e43a5e4eb61642bc40906eea4dbc57c58c0c4daac29122744b8c54b5f434e5f49d964d3fbc05b60dac6cd02514f2f43 +MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/yass/Manifest b/sci-biology/yass/Manifest index fed19b131f6d..a19ed05af550 100644 --- a/sci-biology/yass/Manifest +++ b/sci-biology/yass/Manifest @@ -1,6 +1,4 @@ -AUX 1.14-as-needed.patch 6046 SHA256 16a8e8e042ef6af33b49145fca2da1f4c1dae4f5fcd692509eda8d867cbb8ecd SHA512 4b9227bb16556084121336b01d6d02257ccf7e35765db53b4a6ba2b0a41946a6b600a9dd05156b763b4b37f18d30d2c9111eeca79a1656f757199ba1cda5b3dd WHIRLPOOL 5c4ad2c59472ed93df27c4e9a8d5d29cb9c9e7b84b6318b2e21a799c671cc5b9f7f27408148ac79065f89b5d2fe2957dd7db55f30d01c1f0615a315d3a5cfc2c +AUX 1.14-as-needed.patch 6046 BLAKE2B d2d7d5f71a4db2780d1485fc9074caac6916428e3b3e28fc9553e0be29b0a58182b2af325b577934b94d831b81d1731226000cad4bdbdc297c6cd3dbf627b94e SHA512 4b9227bb16556084121336b01d6d02257ccf7e35765db53b4a6ba2b0a41946a6b600a9dd05156b763b4b37f18d30d2c9111eeca79a1656f757199ba1cda5b3dd DIST yass-1.14.tar.gz 235530 SHA256 f23da1c16cf98317ad11c085feede9790401e888a95d486b550f0c081d4c9018 SHA512 fdfac6f391848d0bd35829a966721a242697b0832803092bd7ea2116149332642ddf3bf5f095fe707f6edbbb9454efe068852fe6d5cdfe937445d9d32a521fa2 WHIRLPOOL e5aabfabe7a1b001e5b41c2fd17dfc345ae66ba06d42decaacfd7948fc60aa38d90ca9d2d7a05cb0d7fa3216dbf125ec64d2341ee4e9c1ffa91b69f60e8a3728 -EBUILD yass-1.14-r2.ebuild 663 SHA256 34ba5ddb35fe3ce8bcc7bfa78a4eb156c57911214d797d30c769c622acc8bdbe SHA512 ac373f6d89d678ca71d0e84d76965cc2d3eed9ccf51d33c799613bcdb588f5adfc7ca588b823a92ea6bb12c39bb91fca6cdd685af3a8ec943a43192b633246cc WHIRLPOOL e1ff4e60a01bdcf1df0684b2ca1596853a0009fe48532a8c3b07f5e9a04670951eb36b02bab0afb0103a97d59fd57826c9741b63f4c6d340d9f31063d2c9ce1c -MISC ChangeLog 2808 SHA256 36408d37a9418e7618211341f457a4dce25fc9f0ca711db9862d215e855a6519 SHA512 46095a17fa40a05dc57a00c78b1d326dd55dc8620ddcf340f2dbbedad22aa561c68726241aeb5096b6c67f42fdef91707ef4569565de25c87732b1559c62074d WHIRLPOOL de75615af31a0051077809b0d56d1b02174b1ec40b72b61e373fed913e4c65cc9bba1810e0ea43c1832c1526b431202e821771ee6eb14a5ea573701a6da8e7b7 -MISC ChangeLog-2015 675 SHA256 ae16ce2beb0da9bd6036d65853da5d15e0b357d5d351dd871aea5f4eec0f4265 SHA512 13ae8cfa681e40ee21cf3dca9f47ebcf7bf0dc14b4c446cd503e5be9bfeb70e87b701d15ff86b7f2603f5ff0233e1354910399d5baaeead597ed6d5074cebea9 WHIRLPOOL efd335d71098594ebfe42a080d923111c3acd3c861db0e5dc6331cbc2eac4cd36a7b504de5babbced9349428f3a895810a6c0299b317e3a76e7b9dc384b191a7 -MISC metadata.xml 439 SHA256 9d66ed15ddabe6d56a5a820c57b95fc4cb91f1b4ac9a3a0221072e04d077693b SHA512 e2f368f4a1b1b46ee31e1308c9a57846b08d9a4958a53caed2f2a9c8f228459cf305e1d07ac4f294bd6eca622094a36be0ec2859f86bd9eecf10070ea832d7af WHIRLPOOL 7747dec3f247172eaddc2e58e24a179e74708a9c7340d9dfc917e9f16be3cf9df66b130e6f385c62f06d9b4d5c9ddab597957053c9de7a6ecc97d28148ca8c13 +EBUILD yass-1.14-r2.ebuild 663 BLAKE2B 04803df835cd4cfa8ccf32e82c9c639d61f5e7dc8ac03d508ce4246eaa7db5dac055ecae954fe42dc849dead9c784777d3cb1f1d2f19cc9272dacc494729e823 SHA512 ac373f6d89d678ca71d0e84d76965cc2d3eed9ccf51d33c799613bcdb588f5adfc7ca588b823a92ea6bb12c39bb91fca6cdd685af3a8ec943a43192b633246cc +MISC metadata.xml 439 BLAKE2B 0c6f834f103c386ac6e4adbac338c0e82ce8c39b5e6e9d101a3bd38f6b62c440148f9516561350a3ce54725464bb89bef6fad36ddde3aa5a54706260a8c51f80 SHA512 e2f368f4a1b1b46ee31e1308c9a57846b08d9a4958a53caed2f2a9c8f228459cf305e1d07ac4f294bd6eca622094a36be0ec2859f86bd9eecf10070ea832d7af |