gentoo resync : 16.09.2020

3 files changed, 0 insertions, 68 deletions

diff --git a/sci-biology/seqan/files/seqan-1.4.2-buildsystem.patch b/sci-biology/seqan/files/seqan-1.4.2-buildsystem.patch
deleted file mode 100644
index 4c7893e90c05..000000000000
--- a/sci-biology/seqan/files/seqan-1.4.2-buildsystem.patch
+++ /dev/null
@@ -1,30 +0,0 @@
-Add default disabled flag to enable generation of documentation.
-For SeqAn 1.4.2 we generally do not want docs, as 1.4.2 is only a
-support library for legacy tools.
-
---- seqan-1.4.2/CMakeLists.txt
-+++ seqan-1.4.2/CMakeLists.txt
-@@ -123,10 +123,12 @@
- add_subdirectory (core)
- message (STATUS "Configuring extras")
- add_subdirectory (extras)
-+if (NOT SEQAN_NO_DOX)
- message (STATUS "Configuring docs")
- add_subdirectory (docs)
- message (STATUS "Configuring manual")
- add_subdirectory (manual)
-+endif ()
- message (STATUS "Configuring sandbox")
- add_subdirectory (sandbox)
- message (STATUS "Configuring util/py_lib")
---- seqan-1.4.2/docs/main.py
-+++ seqan-1.4.2/docs/main.py
-@@ -123,7 +123,7 @@
- 
-         # Done, print end message.
-         print 'Documentation created/updated.'
--        return dddoc_html.WARNING_COUNT > 0
-+        return 0
-     
-     
- def main(argv):
diff --git a/sci-biology/seqan/files/seqan-1.4.2-include.patch b/sci-biology/seqan/files/seqan-1.4.2-include.patch
deleted file mode 100644
index 5baee4d8ebc0..000000000000
--- a/sci-biology/seqan/files/seqan-1.4.2-include.patch
+++ /dev/null
@@ -1,16 +0,0 @@
- core/include/seqan/index/index_qgram_openaddressing.h | 2 ++
- 1 file changed, 2 insertions(+)
-
-diff --git a/core/include/seqan/index/index_qgram_openaddressing.h b/core/include/seqan/index/index_qgram_openaddressing.h
-index 4a6c2e6..8cc9a42 100644
---- a/core/include/seqan/index/index_qgram_openaddressing.h
-+++ b/core/include/seqan/index/index_qgram_openaddressing.h
-@@ -35,6 +35,8 @@
- #ifndef SEQAN_HEADER_INDEX_QGRAM_OPENADRESSING_H
- #define SEQAN_HEADER_INDEX_QGRAM_OPENADRESSING_H
- 
-+#include <smmintrin.h>
-+
- namespace SEQAN_NAMESPACE_MAIN
- {
- 
diff --git a/sci-biology/seqan/files/seqan-1.4.2-shared.patch b/sci-biology/seqan/files/seqan-1.4.2-shared.patch
deleted file mode 100644
index 0f438ff07bce..000000000000
--- a/sci-biology/seqan/files/seqan-1.4.2-shared.patch
+++ /dev/null
@@ -1,22 +0,0 @@
- util/cmake/SeqAnBuildSystem.cmake | 8 ++++----
- 1 file changed, 4 insertions(+), 4 deletions(-)
-
-diff --git a/util/cmake/SeqAnBuildSystem.cmake b/util/cmake/SeqAnBuildSystem.cmake
-index bcba2c0..d53cd01 100644
---- a/util/cmake/SeqAnBuildSystem.cmake
-+++ b/util/cmake/SeqAnBuildSystem.cmake
-@@ -144,10 +144,10 @@ macro (seqan_register_apps)
-     set (CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -DSEQAN_ENABLE_DEBUG=1")
- 
-     # enable static linkage for seqan apps
--    if (CMAKE_COMPILER_IS_GNUCXX OR COMPILER_IS_CLANG AND NOT MINGW)
--      set(CMAKE_FIND_LIBRARY_SUFFIXES ".a")
--      set(CMAKE_EXE_LINKER_FLAGS "-static-libgcc -static-libstdc++")
--    endif ()
-+#    if (CMAKE_COMPILER_IS_GNUCXX OR COMPILER_IS_CLANG AND NOT MINGW)
-+#      set(CMAKE_FIND_LIBRARY_SUFFIXES ".a")
-+#      set(CMAKE_EXE_LINKER_FLAGS "-static-libgcc -static-libstdc++")
-+#    endif ()
- 
-     # Get all direct entries of the current source directory into ENTRIES.
-     file (GLOB ENTRIES