diff options
author | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
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committer | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
commit | 4f2d7949f03e1c198bc888f2d05f421d35c57e21 (patch) | |
tree | ba5f07bf3f9d22d82e54a462313f5d244036c768 /sci-biology/recon/recon-1.08.ebuild |
reinit the tree, so we can have metadata
Diffstat (limited to 'sci-biology/recon/recon-1.08.ebuild')
-rw-r--r-- | sci-biology/recon/recon-1.08.ebuild | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/sci-biology/recon/recon-1.08.ebuild b/sci-biology/recon/recon-1.08.ebuild new file mode 100644 index 000000000000..a96403c812be --- /dev/null +++ b/sci-biology/recon/recon-1.08.ebuild @@ -0,0 +1,47 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit toolchain-funcs + +DESCRIPTION="Automated de novo identification of repeat families from genomic sequences" +HOMEPAGE="http://www.repeatmasker.org/RepeatModeler.html" +SRC_URI="http://www.repeatmasker.org/${P^^}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +IUSE="examples" +KEYWORDS="~amd64 ~x86" + +RDEPEND="dev-lang/perl" + +S=${WORKDIR}/${P^^} + +PATCHES=( + "${FILESDIR}"/${PN}-1.08-buffer-overflow.patch + "${FILESDIR}"/${PN}-1.08-perl-shebangs.patch +) + +src_prepare() { + default + sed -i "s|$path = \"\";|$path = \"${EPREFIX}/usr/libexec/${PN}\";|" scripts/recon.pl || die +} + +src_compile() { + emake CC="$(tc-getCC)" CFLAGS="${CFLAGS}" -C src +} + +src_install() { + dobin scripts/* + + exeinto /usr/libexec/${PN} + doexe src/{edgeredef,eledef,eleredef,famdef,imagespread} + + newdoc {00,}README + + if use examples; then + insinto /usr/share/${PN} + doins -r Demos + fi +} |