diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
| commit | 4f2d7949f03e1c198bc888f2d05f421d35c57e21 (patch) | |
| tree | ba5f07bf3f9d22d82e54a462313f5d244036c768 /sci-biology/phyml/files | |
reinit the tree, so we can have metadata
Diffstat (limited to 'sci-biology/phyml/files')
| -rw-r--r-- | sci-biology/phyml/files/phyml-2.4.5-fix-build-system.patch | 67 |
1 files changed, 67 insertions, 0 deletions
diff --git a/sci-biology/phyml/files/phyml-2.4.5-fix-build-system.patch b/sci-biology/phyml/files/phyml-2.4.5-fix-build-system.patch new file mode 100644 index 000000000000..9b1d9e03ca14 --- /dev/null +++ b/sci-biology/phyml/files/phyml-2.4.5-fix-build-system.patch @@ -0,0 +1,67 @@ +Fix build system to honour user flags. + +--- a/Makefile ++++ b/Makefile +@@ -1,10 +1,4 @@ +-hello !!! +- +-CC = gcc #cc +-CFLAGS = -O4 -fomit-frame-pointer -Wall -static +-# CFLAGS = -Wall +-# CFLAGS = -g -Wall +-# CFLAGS = -pg -Wall -fprofile-arcs -static ++CC ?= gcc + LIBS = -lm + + PROG = PHYML +@@ -23,39 +17,39 @@ + + + $(EXEC) : $(OBJS) +- $(CC) -o $(EXEC) $(OBJS) $(LIBS) $(CFLAGS) ++ $(CC) $(CFLAGS) $(LDFLAGS) -o $(EXEC) $(OBJS) $(LIBS) + + clean : + @rm *.o + ###################################################################################################### + + eigen.o : eigen.c eigen.h +- $(CC) $(CFLAGS) $(DFLAG) -c eigen.c ++ $(CC) $(CFLAGS) $(DFLAG) $(CPPFLAGS) -c eigen.c + + simu.o : simu.c simu.h +- $(CC) $(CFLAGS) $(DFLAG) -c simu.c ++ $(CC) $(CFLAGS) $(DFLAG) $(CPPFLAGS) -c simu.c + + lk.o : lk.c lk.h +- $(CC) $(CFLAGS) $(DFLAG) -c lk.c ++ $(CC) $(CFLAGS) $(DFLAG) $(CPPFLAGS) -c lk.c + + utilities.o : utilities.c utilities.h +- $(CC) $(CFLAGS) $(DFLAG) -c utilities.c ++ $(CC) $(CFLAGS) $(DFLAG) $(CPPFLAGS) -c utilities.c + + optimiz.o : optimiz.c optimiz.h +- $(CC) $(CFLAGS) $(DFLAG) -c optimiz.c ++ $(CC) $(CFLAGS) $(DFLAG) $(CPPFLAGS) -c optimiz.c + + bionj.o : bionj.c bionj.h +- $(CC) $(CFLAGS) $(DFLAG) -c bionj.c ++ $(CC) $(CFLAGS) $(DFLAG) $(CPPFLAGS) -c bionj.c + + main.o : main.c +- $(CC) $(CFLAGS) $(DFLAG) -c main.c ++ $(CC) $(CFLAGS) $(DFLAG) $(CPPFLAGS) -c main.c + + models.o : models.c models.h +- $(CC) $(CFLAGS) $(DFLAG) -c models.c ++ $(CC) $(CFLAGS) $(DFLAG) $(CPPFLAGS) -c models.c + + free.o : free.c free.h +- $(CC) $(CFLAGS) $(DFLAG) -c free.c ++ $(CC) $(CFLAGS) $(DFLAG) $(CPPFLAGS) -c free.c + + options.o : options.c options.h +- $(CC) $(CFLAGS) $(DFLAG) -c options.c ++ $(CC) $(CFLAGS) $(DFLAG) $(CPPFLAGS) -c options.c + |