diff options
author | V3n3RiX <venerix@redcorelinux.org> | 2021-10-01 20:54:53 +0100 |
---|---|---|
committer | V3n3RiX <venerix@redcorelinux.org> | 2021-10-01 20:54:53 +0100 |
commit | 391b5b359a346aff490103da7dddc85047f83830 (patch) | |
tree | 29eea460a0bd7e1ff21d43b9d6df9af4d8a175e1 /sci-biology/mira/files | |
parent | c719fdcee603a5a706a45d10cb598762d56a727d (diff) |
gentoo resync : 01.10.2021
Diffstat (limited to 'sci-biology/mira/files')
-rw-r--r-- | sci-biology/mira/files/mira-4.0.2-boost-1.50.patch | 22 | ||||
-rw-r--r-- | sci-biology/mira/files/mira-4.0.2-cmath.patch | 14 | ||||
-rw-r--r-- | sci-biology/mira/files/mira-4.0.2-cout.patch | 27 |
3 files changed, 0 insertions, 63 deletions
diff --git a/sci-biology/mira/files/mira-4.0.2-boost-1.50.patch b/sci-biology/mira/files/mira-4.0.2-boost-1.50.patch deleted file mode 100644 index 50f83c9021dc..000000000000 --- a/sci-biology/mira/files/mira-4.0.2-boost-1.50.patch +++ /dev/null @@ -1,22 +0,0 @@ -ax_boost_regex.m4 | 4 ++-- -1 file changed, 2 insertions(+), 2 deletions(-) - ---- mira-4.0.2/m4/ax_boost_regex.m4 -+++ mira-4.0.2/m4/ax_boost_regex.m4 -@@ -78,14 +78,14 @@ - for libextension in `ls $BOOSTLIBDIR/libboost_regex*.so* $BOOSTLIBDIR/libboost_regex*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_regex.*\)\.so.*$;\1;' -e 's;^lib\(boost_regex.*\)\.a*$;\1;'` ; do - ax_lib=${libextension} - AC_CHECK_LIB($ax_lib, exit, -- [BOOST_REGEX_LIB="-l$ax_lib"; AC_SUBST(BOOST_REGEX_LIB) link_regex="yes"; break], -+ [BOOST_REGEX_LIB="-l$ax_lib -lboost_system"; AC_SUBST(BOOST_REGEX_LIB) link_regex="yes"; break], - [link_regex="no"]) - done - if test "x$link_regex" != "xyes"; then - for libextension in `ls $BOOSTLIBDIR/boost_regex*.{dll,a}* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_regex.*\)\.dll.*$;\1;' -e 's;^\(boost_regex.*\)\.a*$;\1;'` ; do - ax_lib=${libextension} - AC_CHECK_LIB($ax_lib, exit, -- [BOOST_REGEX_LIB="-l$ax_lib"; AC_SUBST(BOOST_REGEX_LIB) link_regex="yes"; break], -+ [BOOST_REGEX_LIB="-l$ax_lib -lboost_system"; AC_SUBST(BOOST_REGEX_LIB) link_regex="yes"; break], - [link_regex="no"]) - done - fi diff --git a/sci-biology/mira/files/mira-4.0.2-cmath.patch b/sci-biology/mira/files/mira-4.0.2-cmath.patch deleted file mode 100644 index a4a020177af7..000000000000 --- a/sci-biology/mira/files/mira-4.0.2-cmath.patch +++ /dev/null @@ -1,14 +0,0 @@ ---- mira-4.0.2/src/mira/ads.C -+++ mira-4.0.2/src/mira/ads.C -@@ -31,10 +31,11 @@ - * Routines for computing scores and some other classification number are - * provided, too. - * - */ - -+#include <cmath> - - #include "ads.H" - - #include "errorhandling/errorhandling.H" - #include "util/dptools.H" diff --git a/sci-biology/mira/files/mira-4.0.2-cout.patch b/sci-biology/mira/files/mira-4.0.2-cout.patch deleted file mode 100644 index 78e7168cb49d..000000000000 --- a/sci-biology/mira/files/mira-4.0.2-cout.patch +++ /dev/null @@ -1,27 +0,0 @@ - src/progs/quirks.C | 2 ++ - 1 file changed, 2 insertions(+) - -diff --git a/src/progs/quirks.C b/src/progs/quirks.C -index 47e5ee8..060b6f3 100644 ---- a/src/progs/quirks.C -+++ b/src/progs/quirks.C -@@ -25,6 +25,8 @@ - - #include <boost/filesystem.hpp> - -+#include <iostream> -+ - // make the "tcmalloc: large alloc" messages from TCMallom disappear - // by setting the reporting environment variable to a very large value - // see: http://groups.google.com/group/google-perftools/browse_thread/thread/24a003fc35f3d470?pli=1 ---- a/src/mira/parameters.C -+++ b/src/mira/parameters.C -@@ -2222,7 +2222,7 @@ - MIRANOTIFY(Notify::FATAL, "File not found: " << pfile); - } - -- parse(fin, Pv, nullptr); -+ parse(fin, Pv, false); - - fin.close(); - |