gentoo resync : 01.10.2021

3 files changed, 0 insertions, 63 deletions

diff --git a/sci-biology/mira/files/mira-4.0.2-boost-1.50.patch b/sci-biology/mira/files/mira-4.0.2-boost-1.50.patch
deleted file mode 100644
index 50f83c9021dc..000000000000
--- a/sci-biology/mira/files/mira-4.0.2-boost-1.50.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-ax_boost_regex.m4 |    4 ++--
-1 file changed, 2 insertions(+), 2 deletions(-)
-
---- mira-4.0.2/m4/ax_boost_regex.m4
-+++ mira-4.0.2/m4/ax_boost_regex.m4
-@@ -78,14 +78,14 @@
-                 for libextension in `ls $BOOSTLIBDIR/libboost_regex*.so* $BOOSTLIBDIR/libboost_regex*.a* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_regex.*\)\.so.*$;\1;' -e 's;^lib\(boost_regex.*\)\.a*$;\1;'` ; do
-                      ax_lib=${libextension}
- 				    AC_CHECK_LIB($ax_lib, exit,
--                                 [BOOST_REGEX_LIB="-l$ax_lib"; AC_SUBST(BOOST_REGEX_LIB) link_regex="yes"; break],
-+                                 [BOOST_REGEX_LIB="-l$ax_lib -lboost_system"; AC_SUBST(BOOST_REGEX_LIB) link_regex="yes"; break],
-                                  [link_regex="no"])
- 				done
-                 if test "x$link_regex" != "xyes"; then
-                 for libextension in `ls $BOOSTLIBDIR/boost_regex*.{dll,a}* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_regex.*\)\.dll.*$;\1;' -e 's;^\(boost_regex.*\)\.a*$;\1;'` ; do
-                      ax_lib=${libextension}
- 				    AC_CHECK_LIB($ax_lib, exit,
--                                 [BOOST_REGEX_LIB="-l$ax_lib"; AC_SUBST(BOOST_REGEX_LIB) link_regex="yes"; break],
-+                                 [BOOST_REGEX_LIB="-l$ax_lib -lboost_system"; AC_SUBST(BOOST_REGEX_LIB) link_regex="yes"; break],
-                                  [link_regex="no"])
- 				done
-                 fi
diff --git a/sci-biology/mira/files/mira-4.0.2-cmath.patch b/sci-biology/mira/files/mira-4.0.2-cmath.patch
deleted file mode 100644
index a4a020177af7..000000000000
--- a/sci-biology/mira/files/mira-4.0.2-cmath.patch
+++ /dev/null
@@ -1,14 +0,0 @@
---- mira-4.0.2/src/mira/ads.C
-+++ mira-4.0.2/src/mira/ads.C
-@@ -31,10 +31,11 @@
-  * Routines for computing scores and some other classification number are
-  *  provided, too.
-  *
-  */
- 
-+#include <cmath>
- 
- #include "ads.H"
- 
- #include "errorhandling/errorhandling.H"
- #include "util/dptools.H"
diff --git a/sci-biology/mira/files/mira-4.0.2-cout.patch b/sci-biology/mira/files/mira-4.0.2-cout.patch
deleted file mode 100644
index 78e7168cb49d..000000000000
--- a/sci-biology/mira/files/mira-4.0.2-cout.patch
+++ /dev/null
@@ -1,27 +0,0 @@
- src/progs/quirks.C | 2 ++
- 1 file changed, 2 insertions(+)
-
-diff --git a/src/progs/quirks.C b/src/progs/quirks.C
-index 47e5ee8..060b6f3 100644
---- a/src/progs/quirks.C
-+++ b/src/progs/quirks.C
-@@ -25,6 +25,8 @@
- 
- #include <boost/filesystem.hpp>
- 
-+#include <iostream>
-+
- // make the "tcmalloc: large alloc" messages from TCMallom disappear
- // by setting the reporting environment variable to a very large value
- // see: http://groups.google.com/group/google-perftools/browse_thread/thread/24a003fc35f3d470?pli=1
---- a/src/mira/parameters.C
-+++ b/src/mira/parameters.C
-@@ -2222,7 +2222,7 @@
-     MIRANOTIFY(Notify::FATAL, "File not found: " << pfile);
-   }
- 
--  parse(fin, Pv, nullptr);
-+  parse(fin, Pv, false);
- 
-   fin.close();
-