gentoo resync : 15.09.2019

1 files changed, 0 insertions, 56 deletions

diff --git a/sci-biology/goby/goby-1.9.7.3-r1.ebuild b/sci-biology/goby/goby-1.9.7.3-r1.ebuild
deleted file mode 100644
index 9cab1b56d54e..000000000000
--- a/sci-biology/goby/goby-1.9.7.3-r1.ebuild
+++ /dev/null
@@ -1,56 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-ESVN_REPO_URI="https://pbtech-vc.med.cornell.edu/public/svn/icb/trunk/goby"
-EANT_GENTOO_CLASSPATH="commons-logging,commons-lang-2.1,commons-io-1,protobuf-java,fastutil,log4j,jsap,commons-configuration,commons-math-2"
-EANT_GENTOO_CLASSPATH_EXTRA="lib/icb-utils.jar:lib/edu.mssm.crover.cli.jar:lib/JRI.jar:lib/dsiutils-1.0.12.jar"
-
-JAVA_ANT_REWRITE_CLASSPATH="true"
-
-#inherit java-pkg-2 java-ant-2 subversion
-inherit java-pkg-2 java-ant-2
-
-MY_P="${PN}_${PV}"
-
-DESCRIPTION="A DNA sequencing data management framework"
-HOMEPAGE="http://campagnelab.org/software/goby/"
-SRC_URI="http://chagall.med.cornell.edu/goby/releases/archive/release-${MY_P}/${MY_P}-src.zip
-	http://chagall.med.cornell.edu/goby/releases/archive/release-${MY_P}/${MY_P}-deps.zip"
-
-LICENSE="GPL-3 LGPL-3"
-SLOT="0"
-IUSE="+cpp"
-KEYWORDS="~amd64 ~x86"
-
-COMMON_DEPS="dev-java/commons-logging
-	dev-java/commons-lang:2.1
-	dev-java/commons-io:1
-	dev-java/protobuf-java:0
-	dev-java/fastutil:0
-	dev-java/log4j
-	dev-java/jsap
-	dev-java/commons-configuration
-	dev-java/commons-math:2"
-DEPEND=">=virtual/jdk-1.6
-	${COMMON_DEPS}"
-RDEPEND=">=virtual/jre-1.6
-	${COMMON_DEPS}
-	cpp? ( ~sci-biology/goby-cpp-${PV} )"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-	sed -i '/sge/ d' build.xml || die
-	java-pkg-2_src_prepare
-}
-
-src_install() {
-	java-pkg_dojar goby*.jar
-	java-pkg_dolauncher goby --jar goby.jar
-
-	insinto /usr/share/${PN}
-	doins -r python
-	dodoc CHANGES.txt
-}