gentoo auto-resync : 31:03:2024 - 02:13:53

1 files changed, 0 insertions, 71 deletions

diff --git a/sci-biology/emboss/emboss-6.6.0-r2.ebuild b/sci-biology/emboss/emboss-6.6.0-r2.ebuild
deleted file mode 100644
index 79d3034a0985..000000000000
--- a/sci-biology/emboss/emboss-6.6.0-r2.ebuild
+++ /dev/null
@@ -1,71 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit autotools emboss-r3 readme.gentoo-r1
-
-DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package"
-SRC_URI="
-	ftp://emboss.open-bio.org/pub/${PN^^}/${P^^}.tar.gz
-	https://dev.gentoo.org/~soap/distfiles/${P}-patches-r1.tar.xz"
-S="${WORKDIR}/${P^^}"
-
-LICENSE+=" Apache-2.0 GPL-3+ CC-BY-3.0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="minimal"
-
-RDEPEND="
-	!dev-build/cons
-	!games-action/xbomber
-"
-PDEPEND="
-	!minimal? (
-		sci-biology/aaindex
-		sci-biology/cutg
-		sci-biology/primer3
-		sci-biology/prints
-		sci-biology/prosite
-		sci-biology/rebase
-	)"
-
-PATCHES=(
-	"${WORKDIR}"/patches/${P}-fix-build-system.patch
-	"${WORKDIR}"/patches/${P}-FORTIFY_SOURCE-fix.patch
-	"${WORKDIR}"/patches/${P}-plplot-declarations.patch
-	"${WORKDIR}"/patches/${P}-qa-implicit-declarations.patch
-	"${WORKDIR}"/patches/${P}-C99-bool.patch
-	"${WORKDIR}"/patches/${P}-Wimplicit-function-declaration.patch
-)
-
-src_prepare() {
-	default
-	eautoreconf
-}
-
-src_install() {
-	emboss-r3_src_install
-
-	readme.gentoo_create_doc
-
-	# Install env file for setting libplplot and acd files path.
-	newenvd - 22emboss <<- EOF
-		# ACD files location
-		EMBOSS_ACDROOT="${EPREFIX}/usr/share/EMBOSS/acd"
-		EMBOSS_DATA="${EPREFIX}/usr/share/EMBOSS/data"
-	EOF
-
-	# Remove useless dummy files
-	find "${ED}"/usr/share/EMBOSS -name dummyfile -delete \
-		|| die "Failed to remove dummy files"
-
-	# Move the provided codon files to a different directory. This will avoid
-	# user confusion and file collisions on case-insensitive file systems (see
-	# bug #115446). This change is documented in "README.gentoo".
-	mv "${ED}"/usr/share/EMBOSS/data/CODONS{,.orig} \
-		|| die "Failed to move CODON directory"
-}
-
-pkg_postinst() {
-	readme.gentoo_print_elog
-}