diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2021-03-20 14:27:17 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2021-03-20 14:27:17 +0000 |
| commit | 5bb9ff1ee56d2b5e75e01a7f066d8b0cec84ec02 (patch) | |
| tree | 66e860a5099bcad013f1cf667255dc372a7c11b3 /sci-biology/embassy-iprscan | |
| parent | 7218e1b46bceac05841e90472501742d905fb3fc (diff) | |
gentoo resync : 20.03.2021
Diffstat (limited to 'sci-biology/embassy-iprscan')
3 files changed, 21 insertions, 21 deletions
diff --git a/sci-biology/embassy-iprscan/Manifest b/sci-biology/embassy-iprscan/Manifest index 179b45815bc4..6e6ae833c3fb 100644 --- a/sci-biology/embassy-iprscan/Manifest +++ b/sci-biology/embassy-iprscan/Manifest @@ -1,4 +1,4 @@ -AUX embassy-iprscan-4.3.1.650_fix-build-system.patch 3167 BLAKE2B ef1f3263072850667744e2064929b2cd38620046f1cd2c6ec5c4bed135554cdb7e36d8b58363031051fbb98f294dc9f6c77bc7ac81ff14110baca368e51b8407 SHA512 b2b28377e60790db744f32eb5cd4de5b7e15129b603e21013eeeebaea5c06e6867937b6441f3d8e788effdbb58c57b8841880aa7d4b4eae2b0b83dc72242f4d8 +AUX embassy-iprscan-4.3.1.650_fix-build-system.patch 2944 BLAKE2B 0342606ad758dc533186f455062b7019a04a0b7e8d49ca61214de09caf0518bec6b63f0dcc69652eb24bbb8704047cf0f8739cb9c8b8f2883e525176b389aa1a SHA512 98431bf56317a987083fe936f6b5d0d00c5f773bbdab5e3ee4dab6d1d6b6edb5448c4602c11f79aeed05a5642838cae7c3ab692661b18d1d15fdc9793604c856 DIST embassy-iprscan-4.3.1.660.tar.gz 406720 BLAKE2B a7e5a20b8fd1eb1ba562b5db6643542d5062b270d69a2c53aa66f5cb58f48f1d3a480ae062e53341a884eb497fff22d546df42256cdc131afb183067166fa8b6 SHA512 eed75693557f141331dfb6bec6961a8f6eab93780cad3b629d547b8635be2df6ec85e5ae0e9646d174a562a0f6d31c3c487a4dacac9efdd393a7144cd5716878 -EBUILD embassy-iprscan-4.3.1.660.ebuild 363 BLAKE2B ca438f24229f607365742c8a1dd9d0fc72ad44a374b7ef6c4446684dfb3a7229bd3b9ca85bbe396fe247a7ea6f9d7b9ea32753f51bdd74919ad718a019e760a3 SHA512 3b140b4b5f4e25d6935b4f159cf636d76dd5437c97fa3c4d0293287db5e1e52cda7db29eb4a0cd4b34aa9596da791725a51a653af27be52cdfbfb76c6ba1c1f6 +EBUILD embassy-iprscan-4.3.1.660.ebuild 360 BLAKE2B c4cc140e02c9eced5cff9976734fcbccde4a61d259cf1787a0a744f0639ea12c27d173e8badfc649f7779dd18978523dc1acf86174e1eccf697351c839fa4c9e SHA512 5e4a54bd7fb3d0522bee736678a7e8e590b07635137089487412c23c2717c6fe9b6aa1075fcf2b8c94656388fe2594c78f5c0f7c9eef91807c355809d82ca527 MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-iprscan/embassy-iprscan-4.3.1.660.ebuild b/sci-biology/embassy-iprscan/embassy-iprscan-4.3.1.660.ebuild index 3279ed3bc8e8..351ecd1df3f8 100644 --- a/sci-biology/embassy-iprscan/embassy-iprscan-4.3.1.660.ebuild +++ b/sci-biology/embassy-iprscan/embassy-iprscan-4.3.1.660.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 EBO_DESCRIPTION="InterProScan motif detection add-on package" diff --git a/sci-biology/embassy-iprscan/files/embassy-iprscan-4.3.1.650_fix-build-system.patch b/sci-biology/embassy-iprscan/files/embassy-iprscan-4.3.1.650_fix-build-system.patch index 8c8a1060e30f..ab627c323253 100644 --- a/sci-biology/embassy-iprscan/files/embassy-iprscan-4.3.1.650_fix-build-system.patch +++ b/sci-biology/embassy-iprscan/files/embassy-iprscan-4.3.1.650_fix-build-system.patch @@ -1,13 +1,6 @@ - configure.ac | 49 +++++++------------------------------------------ - emboss_acd/Makefile.am | 2 +- - src/Makefile.am | 6 ++---- - 3 files changed, 10 insertions(+), 47 deletions(-) - -diff --git a/configure.ac b/configure.ac -index 9052ca5..c12c268 100644 --- a/configure.ac +++ b/configure.ac -@@ -635,33 +635,6 @@ AS_CASE([${host_os}], +@@ -635,33 +635,6 @@ @@ -41,7 +34,7 @@ index 9052ca5..c12c268 100644 dnl FIXME: This does no longer seem required with Autoconf 2.67? dnl Intel MacOSX 10.6 puts X11 in a non-standard place dnl AS_IF([test "x${with_x}" != "xno"], -@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL +@@ -737,21 +710,6 @@ @@ -63,7 +56,7 @@ index 9052ca5..c12c268 100644 dnl Test if --enable-localforce given locallink="no" embprefix="/usr/local" -@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs], +@@ -874,6 +832,13 @@ AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"]) @@ -77,8 +70,6 @@ index 9052ca5..c12c268 100644 # Enable the purify tool: --enable-purify, sets CC and LIBTOOL -diff --git a/emboss_acd/Makefile.am b/emboss_acd/Makefile.am -index e1c1878..e253c95 100644 --- a/emboss_acd/Makefile.am +++ b/emboss_acd/Makefile.am @@ -1,3 +1,3 @@ @@ -86,11 +77,9 @@ index e1c1878..e253c95 100644 -pkgdata_DATA = *.acd +pkgdata_DATA = $(srcdir)/*.acd pkgdatadir=$(prefix)/share/EMBOSS/acd -diff --git a/src/Makefile.am b/src/Makefile.am -index 0afc96a..904b41a 100644 --- a/src/Makefile.am +++ b/src/Makefile.am -@@ -17,9 +17,7 @@ AM_CPPFLAGS = -I../../../nucleus -I../../../ajax/pcre \ +@@ -17,9 +17,7 @@ -I../../../ajax/ensembl -I../../../ajax/ajaxdb \ -I../../../ajax/acd -I../../../plplot else @@ -101,10 +90,21 @@ index 0afc96a..904b41a 100644 endif if ISSHARED -@@ -58,5 +56,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \ +@@ -34,7 +32,7 @@ + -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre \ + $(NLAIXLIBS) -leplplot + else +-AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L${embprefix}/lib -lnucleus -lacd \ ++AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -lnucleus -lacd \ + -lajaxdb -lensembl -lajaxg -lajax -lepcre $(NLAIXLIBS) -leplplot + endif + endif +@@ -57,6 +55,6 @@ + ../../../plplot/libeplplot.la \ $(XLIB) else - LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ +-LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ - -lajax -lepcre $(NLADD) -leplplot $(XLIB) ++LDADD = -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ + -lajax $(NLADD) $(XLIB) endif |