diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2022-06-29 12:04:12 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2022-06-29 12:04:12 +0100 |
| commit | 0f558761aa2dee1017b4751e4017205e015a9560 (patch) | |
| tree | 037df795519468a25d9362b4e95cdaeb84eb1cf9 /sci-biology/bcftools | |
| parent | 752d6256e5204b958b0ef7905675a940b5e9172f (diff) | |
gentoo resync : 29.12.2022
Diffstat (limited to 'sci-biology/bcftools')
| -rw-r--r-- | sci-biology/bcftools/Manifest | 6 | ||||
| -rw-r--r-- | sci-biology/bcftools/bcftools-1.13.ebuild | 44 | ||||
| -rw-r--r-- | sci-biology/bcftools/bcftools-1.15.1.ebuild (renamed from sci-biology/bcftools/bcftools-1.15.ebuild) | 4 |
3 files changed, 3 insertions, 51 deletions
diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest index 4b221bb1a0f8..71dc6fb7d0a0 100644 --- a/sci-biology/bcftools/Manifest +++ b/sci-biology/bcftools/Manifest @@ -1,5 +1,3 @@ -DIST bcftools-1.13.tar.bz2 6906796 BLAKE2B 4c02d65733d28684f9a976e082913d79dbac4463c9471fc26d8ee0cbe7ad25af429cf7d01b9771bc34309386ccd2d77ebd54fbf64ed4183d1c2ebfbc0e727afb SHA512 aa533233dd2fec2279859204be39430c4fc630137a91d57fe917fd7a220044d5202ddc3d44bcffc3bd5bd5bb64f6ea4c8ec3c31e5e1ec72399998f1e6f23a55a -DIST bcftools-1.15.tar.bz2 6899394 BLAKE2B 44d11f5d594c547c0e3dfdcc9b2d8b55d837d17cf98465c4ce153ad0a8dce3db172276bdd24ad3dcecb3c9a064c649f3cbcc13e09194c2f655796e9a478cb27f SHA512 43fd7414c93175c6a8d69c8f8ba681a8c1f6b934ce0834dc130ff367825e60aa57736e36d379e5bdee84a01d018ee36eeeedebdbce85161745a5a063abdbca44 -EBUILD bcftools-1.13.ebuild 896 BLAKE2B 74b1387b81ec75926bd76d62033d7cf0708ac3b9a0b0b0573fec1c70efb47b84bd3fa626f3ff3144e380f07822bd3d9e56f4ddb1e09a4a09082cb1d6d3229b39 SHA512 bb0f18c2102fbfa8d5ee636c81308ea8a0ef6de80943423377846ebd2180881ca745e7eddd94be7ad7b34a2313acc43553d8a31ee474542de5d29d4874e935e4 -EBUILD bcftools-1.15.ebuild 896 BLAKE2B bbeeefad535f45694b8bce683c356e26543b63338e52ccd163ec5edbd54eb3847e5998b9f5a49012d011e9b4567b09eaa61e2a9be8f2d6a9424b543056825601 SHA512 727ffc3f6288117af87c2dfaf5597995743ad326f986777c0507d134b41895bb5039f932090a5d9962a1fcb10604c343c98c1c7b60bf0325d67bcee040820052 +DIST bcftools-1.15.1.tar.bz2 6917252 BLAKE2B d2389df8d2a1bbc48fcaccad47d77ff99d700e82e04330189e7d93acdac97a13506c2b799fbba31bdc0988977c7df7c699e7b156f3530dd35e5f052c6f977731 SHA512 60fedacc41051675d372e68146ac8fa0dc019a7fb694fda487d89e62f34edaf5ac11cca38779e9bcfcf8b3148802fadabed12f7e46ad534ad5087b8d6383f97b +EBUILD bcftools-1.15.1.ebuild 891 BLAKE2B 532c584a7620b40136572ac4d8e73b09d9c80bd96cb39992dddc0366323cf96dd30d86bf968129f4bdd49f9f25cc6ad631327a3d4bc325e8f22242461af13806 SHA512 d585cbda0b571576139f1e4edf8c51e64665b06fd73e2ea81f5e9a94d765ff4c4438dfdc3e11ced9e6e05ccefce13997b5faa70905f43b8f27ca07f2db976af7 MISC metadata.xml 344 BLAKE2B 37f8e82e8a5a9ad572580a7e5ae6daa6911d672f17b8526f81b236cbc2e50a32c4cd2566aaed9f5feee016d7e2de7db2a40b60616e86c3e8cae307d60cebc70e SHA512 0160c9606089d610613d71dc0aa9c9c5e5266483fdc9c407b6e0ed911eac8f8b32ffaf5a49bbb427393c8240e9868df51f0fc68b2f45467f65d9b3d54b0ddde1 diff --git a/sci-biology/bcftools/bcftools-1.13.ebuild b/sci-biology/bcftools/bcftools-1.13.ebuild deleted file mode 100644 index b0ddd23857c2..000000000000 --- a/sci-biology/bcftools/bcftools-1.13.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{8..10} ) - -inherit python-single-r1 - -DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" -HOMEPAGE="http://www.htslib.org" -SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND=" - dev-lang/perl - $(python_gen_cond_dep ' - dev-python/matplotlib[${PYTHON_USEDEP}] - ') - =sci-libs/htslib-${PV}*:= - sys-libs/zlib - ${PYTHON_DEPS}" -DEPEND="${RDEPEND}" -BDEPEND="${PYTHON_DEPS}" - -src_prepare() { - default - - python_fix_shebang misc/{gff2gff,guess-ploidy,plot-roh}.py - - # remove bundled htslib - rm -r htslib-* || die -} - -src_configure() { - econf \ - --disable-bcftools-plugins \ - --disable-libgsl \ - --with-htslib=system -} diff --git a/sci-biology/bcftools/bcftools-1.15.ebuild b/sci-biology/bcftools/bcftools-1.15.1.ebuild index 4ec6b0a7e097..7de00114bfa6 100644 --- a/sci-biology/bcftools/bcftools-1.15.ebuild +++ b/sci-biology/bcftools/bcftools-1.15.1.ebuild @@ -18,9 +18,7 @@ REQUIRED_USE="${PYTHON_REQUIRED_USE}" RDEPEND=" dev-lang/perl - $(python_gen_cond_dep ' - dev-python/matplotlib[${PYTHON_USEDEP}] - ') + $(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]') =sci-libs/htslib-${PV}*:= sys-libs/zlib ${PYTHON_DEPS}" |