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author | V3n3RiX <venerix@koprulu.sector> | 2022-07-09 15:43:36 +0100 |
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committer | V3n3RiX <venerix@koprulu.sector> | 2022-07-09 15:43:36 +0100 |
commit | 2719f73b6813d11d13a9650cdd2ab8ec6e69385d (patch) | |
tree | 8c816148bcbd22757d892089c989ae614eae4f5a /sci-biology/amap/amap-2.2-r5.ebuild | |
parent | 0f558761aa2dee1017b4751e4017205e015a9560 (diff) |
gentoo resync : 09.07.2022
Diffstat (limited to 'sci-biology/amap/amap-2.2-r5.ebuild')
-rw-r--r-- | sci-biology/amap/amap-2.2-r5.ebuild | 59 |
1 files changed, 59 insertions, 0 deletions
diff --git a/sci-biology/amap/amap-2.2-r5.ebuild b/sci-biology/amap/amap-2.2-r5.ebuild new file mode 100644 index 000000000000..949749969c27 --- /dev/null +++ b/sci-biology/amap/amap-2.2-r5.ebuild @@ -0,0 +1,59 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit java-pkg-opt-2 java-ant-2 toolchain-funcs + +MY_P=${PN}.${PV} + +DESCRIPTION="Protein multiple-alignment-based sequence annealing" +HOMEPAGE="https://wiki.gentoo.org/wiki/No_homepage" +SRC_URI="http://baboon.math.berkeley.edu/${PN}/download/${MY_P}.tar.gz" +S="${WORKDIR}/${PN}-align" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="java" + +RDEPEND="java? ( >=virtual/jre-1.8:* )" +BDEPEND="${RDEPEND}" + +PATCHES=( + "${FILESDIR}"/${P}-makefile.patch + "${FILESDIR}"/${P}-includes.patch +) + +src_prepare() { + default + java-pkg-opt-2_src_prepare +} + +src_configure() { + tc-export CXX +} + +src_compile() { + emake -C align + + if use java; then + pushd display >/dev/null || die + eant -Ddisplay all || die + popd >/dev/null || die + fi +} + +src_install() { + dobin align/${PN} + + dodoc align/{README,PROBCONS.README} + + insinto /usr/share/${PN} + doins -r examples + + if use java; then + java-pkg_newjar display/AmapDisplay.jar amapdisplay.jar + java-pkg_dolauncher amapdisplay --jar amapdisplay.jar + fi +} |