gentoo resync : 06.01.2018

17 files changed, 24 insertions, 24 deletions

diff --git a/metadata/md5-cache/sci-libs/Manifest.gz b/metadata/md5-cache/sci-libs/Manifest.gz
index dc45517dbad3..af92b88981a8 100644
--- a/metadata/md5-cache/sci-libs/Manifest.gz
+++ b/metadata/md5-cache/sci-libs/Manifest.gz
diff --git a/metadata/md5-cache/sci-libs/blas-reference-20151113-r1 b/metadata/md5-cache/sci-libs/blas-reference-20151113-r1
index 74e448058d50..4a3adf437586 100644
--- a/metadata/md5-cache/sci-libs/blas-reference-20151113-r1
+++ b/metadata/md5-cache/sci-libs/blas-reference-20151113-r1
@@ -1,13 +1,13 @@
 DEFINED_PHASES=compile configure install postinst prepare setup test
-DEPEND=app-eselect/eselect-blas virtual/fortran sys-devel/make >=dev-util/cmake-3.7.2
+DEPEND=app-eselect/eselect-blas doc? ( app-doc/blas-docs ) virtual/pkgconfig virtual/fortran sys-devel/make >=dev-util/cmake-3.7.2
 DESCRIPTION=Basic Linear Algebra Subprograms F77 reference implementations
 EAPI=6
 HOMEPAGE=http://www.netlib.org/blas/
 IUSE=doc
 KEYWORDS=~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos
 LICENSE=BSD
-RDEPEND=app-eselect/eselect-blas doc? ( app-doc/blas-docs ) virtual/pkgconfig virtual/fortran
+RDEPEND=app-eselect/eselect-blas doc? ( app-doc/blas-docs ) virtual/fortran
 SLOT=0
 SRC_URI=http://www.netlib.org/lapack/lapack-3.6.0.tgz
 _eclasses_=cmake-utils	202a2becc86cb78ba14baad148d06759	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	fortran-2	9e7f20c99213f0627ff7f873d4aaa25d	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
-_md5_=5665028b4c76e61db366684bcbb4c2f2
+_md5_=00fa35c70357b65b39849117797479dc
diff --git a/metadata/md5-cache/sci-libs/blas-reference-20161223 b/metadata/md5-cache/sci-libs/blas-reference-20161223
index 0b8cc171e247..9b46480b5e8a 100644
--- a/metadata/md5-cache/sci-libs/blas-reference-20161223
+++ b/metadata/md5-cache/sci-libs/blas-reference-20161223
@@ -1,13 +1,13 @@
 DEFINED_PHASES=compile configure install postinst prepare setup test
-DEPEND=app-eselect/eselect-blas virtual/fortran sys-devel/make >=dev-util/cmake-3.7.2
+DEPEND=app-eselect/eselect-blas doc? ( app-doc/blas-docs ) virtual/pkgconfig virtual/fortran sys-devel/make >=dev-util/cmake-3.7.2
 DESCRIPTION=Basic Linear Algebra Subprograms F77 reference implementations
 EAPI=6
 HOMEPAGE=http://www.netlib.org/blas/
 IUSE=doc
 KEYWORDS=~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos
 LICENSE=BSD
-RDEPEND=app-eselect/eselect-blas doc? ( app-doc/blas-docs ) virtual/pkgconfig virtual/fortran
+RDEPEND=app-eselect/eselect-blas doc? ( app-doc/blas-docs ) virtual/fortran
 SLOT=0
 SRC_URI=http://www.netlib.org/lapack/lapack-3.7.0.tgz
 _eclasses_=cmake-utils	202a2becc86cb78ba14baad148d06759	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	fortran-2	9e7f20c99213f0627ff7f873d4aaa25d	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
-_md5_=7509ee7330cd08de6cde2281a8f5561a
+_md5_=dbfb3d786a5e2fee14a5a3372febb533
diff --git a/metadata/md5-cache/sci-libs/chemkit-0.1-r1 b/metadata/md5-cache/sci-libs/chemkit-0.1-r1
index 3c28636428ef..2debf752c087 100644
--- a/metadata/md5-cache/sci-libs/chemkit-0.1-r1
+++ b/metadata/md5-cache/sci-libs/chemkit-0.1-r1
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/boost dev-libs/rapidxml dev-cpp/eigen:3 dev-qt/qtcore:4 dev-qt/
 REQUIRED_USE=python_targets_python2_7 test? ( applications python )
 SLOT=0
 SRC_URI=mirror://sourceforge/project/chemkit/chemkit-0.1.tar.gz
-_eclasses_=cmake-utils	202a2becc86cb78ba14baad148d06759	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	python-single-r1	317a2557b4d7319a7418225f65accf77	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	virtualx	171580f737f5aaf18fcb456548588066	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=cmake-utils	202a2becc86cb78ba14baad148d06759	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	python-single-r1	317a2557b4d7319a7418225f65accf77	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	virtualx	3a3c4637ea6d5a2113707a644766337c	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=39c89fd45f3fffcada4f61bb7e9b6b1e
diff --git a/metadata/md5-cache/sci-libs/gdal-2.0.2-r3 b/metadata/md5-cache/sci-libs/gdal-2.0.2-r3
index 0e1d749d1306..083cf0b0ac5b 100644
--- a/metadata/md5-cache/sci-libs/gdal-2.0.2-r3
+++ b/metadata/md5-cache/sci-libs/gdal-2.0.2-r3
@@ -11,4 +11,4 @@ REQUIRED_USE=spatialite? ( sqlite ) python? ( || ( python_targets_python2_7 pyth
 SLOT=0/2
 SRC_URI=http://download.osgeo.org/gdal/2.0.2/gdal-2.0.2.tar.gz
 _eclasses_=autotools	dc412f38566b91012efd58b9c203e6c3	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	distutils-r1	372bbe39047c0a2550319a3a82f3e063	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	0ee72667014428e01a01df2345244cf3	libtool	0081a71a261724730ec4c248494f044d	ltprune	2770eed66a9b8ef944714cd0e968182e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	01e8c68d5a528bbcda4d3c60205983df	perl-module	863b35d127db98823d439f8d73c2d011	python-r1	e9350ec46bb5c9f3504b4fbe8b8d8987	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	unpacker	f40f7b4bd5aa88c2a4ba7b0d1e0ded70	versionator	c80ccf29e90adea7c5cae94b42eb76d0	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
-_md5_=c41205593138447134601e4467998866
+_md5_=1a34e2968ccabaf341f1dbc68efffb99
diff --git a/metadata/md5-cache/sci-libs/gdal-2.0.3 b/metadata/md5-cache/sci-libs/gdal-2.0.3
index 232902b389e7..28af2864e42c 100644
--- a/metadata/md5-cache/sci-libs/gdal-2.0.3
+++ b/metadata/md5-cache/sci-libs/gdal-2.0.3
@@ -11,4 +11,4 @@ REQUIRED_USE=mdb? ( java ) python? ( || ( python_targets_python2_7 python_target
 SLOT=0/2
 SRC_URI=http://download.osgeo.org/gdal/2.0.3/gdal-2.0.3.tar.gz
 _eclasses_=autotools	dc412f38566b91012efd58b9c203e6c3	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	distutils-r1	372bbe39047c0a2550319a3a82f3e063	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	0ee72667014428e01a01df2345244cf3	libtool	0081a71a261724730ec4c248494f044d	ltprune	2770eed66a9b8ef944714cd0e968182e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	01e8c68d5a528bbcda4d3c60205983df	perl-module	863b35d127db98823d439f8d73c2d011	python-r1	e9350ec46bb5c9f3504b4fbe8b8d8987	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
-_md5_=1724159bc9724dddcf9fa8a52a446ea6
+_md5_=99e54e09b4fa70532bb63fcf2850e062
diff --git a/metadata/md5-cache/sci-libs/mmdb-2.0.5 b/metadata/md5-cache/sci-libs/mmdb-2.0.5-r1
index 59e05e7b1e01..0aeda402fd46 100644
--- a/metadata/md5-cache/sci-libs/mmdb-2.0.5
+++ b/metadata/md5-cache/sci-libs/mmdb-2.0.5-r1
@@ -1,4 +1,4 @@
-DEFINED_PHASES=-
+DEFINED_PHASES=configure install
 DESCRIPTION=The Coordinate Library for working with CCP4 coordinate files
 EAPI=6
 HOMEPAGE=https://launchpad.net/mmdb/
@@ -7,4 +7,4 @@ KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
 LICENSE=GPL-2 LGPL-3
 SLOT=2
 SRC_URI=ftp://ftp.ccp4.ac.uk/opensource/mmdb2-2.0.5.tar.gz
-_md5_=0b2d3c8201a67dd71571a893c04312d6
+_md5_=cff5bca7f5bd0fe90a564a345be34080
diff --git a/metadata/md5-cache/sci-libs/neartree-5.1.1 b/metadata/md5-cache/sci-libs/neartree-5.1.1
index 7459fede6217..a1158b4aa827 100644
--- a/metadata/md5-cache/sci-libs/neartree-5.1.1
+++ b/metadata/md5-cache/sci-libs/neartree-5.1.1
@@ -10,4 +10,4 @@ RDEPEND=dev-libs/cvector
 SLOT=0
 SRC_URI=mirror://sourceforge/neartree/NearTree-5.1.1.tar.gz -> neartree-5.1.1.tar.gz
 _eclasses_=cmake-utils	202a2becc86cb78ba14baad148d06759	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
-_md5_=1fd4dd32ece21123d47877bf979a6cbd
+_md5_=225debfa9ba2031713e6ac9978932d5d
diff --git a/metadata/md5-cache/sci-libs/plplot-5.11.1-r1 b/metadata/md5-cache/sci-libs/plplot-5.11.1-r1
index 42362d961409..f430ff4bd41a 100644
--- a/metadata/md5-cache/sci-libs/plplot-5.11.1-r1
+++ b/metadata/md5-cache/sci-libs/plplot-5.11.1-r1
@@ -10,5 +10,5 @@ RDEPEND=cairo? ( x11-libs/cairo:0=[svg?,X?] ) gd? ( media-libs/gd:2=[jpeg?,png?]
 REQUIRED_USE=python? ( python_targets_python2_7 ) qt4? ( dynamic ) test? ( latex ) tk? ( tcl )
 SLOT=0/12
 SRC_URI=mirror://sourceforge/plplot/plplot-5.11.1.tar.gz
-_eclasses_=cmake-utils	202a2becc86cb78ba14baad148d06759	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	fortran-2	9e7f20c99213f0627ff7f873d4aaa25d	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	python-single-r1	317a2557b4d7319a7418225f65accf77	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	virtualx	171580f737f5aaf18fcb456548588066	wxwidgets	04e063b0eff26daaea83d859dd9d6e05	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=cmake-utils	202a2becc86cb78ba14baad148d06759	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	fortran-2	9e7f20c99213f0627ff7f873d4aaa25d	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	python-single-r1	317a2557b4d7319a7418225f65accf77	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	virtualx	3a3c4637ea6d5a2113707a644766337c	wxwidgets	04e063b0eff26daaea83d859dd9d6e05	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=7f2a9a3cbe350666a7c80acd73231b80
diff --git a/metadata/md5-cache/sci-libs/plplot-5.12.0-r1 b/metadata/md5-cache/sci-libs/plplot-5.12.0-r1
index 668041488b30..52025257738a 100644
--- a/metadata/md5-cache/sci-libs/plplot-5.12.0-r1
+++ b/metadata/md5-cache/sci-libs/plplot-5.12.0-r1
@@ -11,5 +11,5 @@ REQUIRED_USE=python? ( python_targets_python2_7 ) qt5? ( dynamic ) test? ( latex
 RESTRICT=octave? ( test )
 SLOT=0/14
 SRC_URI=mirror://sourceforge/plplot/plplot-5.12.0.tar.gz
-_eclasses_=cmake-utils	202a2becc86cb78ba14baad148d06759	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	fortran-2	9e7f20c99213f0627ff7f873d4aaa25d	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	python-single-r1	317a2557b4d7319a7418225f65accf77	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	virtualx	171580f737f5aaf18fcb456548588066	wxwidgets	04e063b0eff26daaea83d859dd9d6e05	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=cmake-utils	202a2becc86cb78ba14baad148d06759	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	fortran-2	9e7f20c99213f0627ff7f873d4aaa25d	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	python-single-r1	317a2557b4d7319a7418225f65accf77	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	virtualx	3a3c4637ea6d5a2113707a644766337c	wxwidgets	04e063b0eff26daaea83d859dd9d6e05	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=5894f4fd5a4957b627a3595d34fab084
diff --git a/metadata/md5-cache/sci-libs/rosetta-db-3.4 b/metadata/md5-cache/sci-libs/rosetta-db-3.4
index d06afcb9c88f..987c41646f9a 100644
--- a/metadata/md5-cache/sci-libs/rosetta-db-3.4
+++ b/metadata/md5-cache/sci-libs/rosetta-db-3.4
@@ -1,6 +1,6 @@
 DEFINED_PHASES=install nofetch
 DESCRIPTION=Essential database for rosetta
-EAPI=5
+EAPI=6
 HOMEPAGE=http://www.rosettacommons.org
 KEYWORDS=~amd64 ~x86
 LICENSE=rosetta
@@ -8,4 +8,4 @@ RESTRICT=fetch binchecks strip
 SLOT=0
 SRC_URI=rosetta3.4_database.tgz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9
-_md5_=7234d995f93a48e6343497eb12686191
+_md5_=ddc5cbc5e45a2004724d8f174e568809
diff --git a/metadata/md5-cache/sci-libs/rosetta-fragments-3.1-r1 b/metadata/md5-cache/sci-libs/rosetta-fragments-3.1-r1
index e88fb812d95a..73e9865f4240 100644
--- a/metadata/md5-cache/sci-libs/rosetta-fragments-3.1-r1
+++ b/metadata/md5-cache/sci-libs/rosetta-fragments-3.1-r1
@@ -1,12 +1,12 @@
 DEFINED_PHASES=compile install nofetch prepare
 DESCRIPTION=Fragment library for rosetta
-EAPI=5
+EAPI=6
 HOMEPAGE=http://www.rosettacommons.org
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=rosetta
-RDEPEND=sci-biology/ncbi-tools || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ ) sci-biology/psipred
+RDEPEND=sci-biology/ncbi-tools sci-biology/update-blastdb sci-biology/psipred
 RESTRICT=fetch
 SLOT=0
 SRC_URI=rosetta3.1_fragments.tgz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	prefix	e51c7882b7b721e54e684f7eb143cbfe	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9
-_md5_=142c81b25a21efd52cdcbd9555be2c1d
+_md5_=69efd6ba7d21f8c57ab6358aa5b71ea2
diff --git a/metadata/md5-cache/sci-libs/scikits_image-0.11.3 b/metadata/md5-cache/sci-libs/scikits_image-0.11.3
index 5ec6c83a23e4..1143265c785b 100644
--- a/metadata/md5-cache/sci-libs/scikits_image-0.11.3
+++ b/metadata/md5-cache/sci-libs/scikits_image-0.11.3
@@ -10,5 +10,5 @@ RDEPEND=>=dev-python/matplotlib-1.1.0[python_targets_python2_7(-)?,python_target
 REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 )
 SLOT=0
 SRC_URI=mirror://pypi/s/scikit-image/scikit-image-0.11.3.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	distutils-r1	372bbe39047c0a2550319a3a82f3e063	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	ltprune	2770eed66a9b8ef944714cd0e968182e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	e9350ec46bb5c9f3504b4fbe8b8d8987	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	virtualx	171580f737f5aaf18fcb456548588066	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	distutils-r1	372bbe39047c0a2550319a3a82f3e063	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	ltprune	2770eed66a9b8ef944714cd0e968182e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	e9350ec46bb5c9f3504b4fbe8b8d8987	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	virtualx	3a3c4637ea6d5a2113707a644766337c	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=32bf1ccafed2ea16034dc4fecf5ee75e
diff --git a/metadata/md5-cache/sci-libs/scikits_image-0.12.3 b/metadata/md5-cache/sci-libs/scikits_image-0.12.3
index 620295817ea7..671412ff16f6 100644
--- a/metadata/md5-cache/sci-libs/scikits_image-0.12.3
+++ b/metadata/md5-cache/sci-libs/scikits_image-0.12.3
@@ -10,5 +10,5 @@ RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python
 REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 )
 SLOT=0
 SRC_URI=mirror://pypi/s/scikit-image/scikit-image-0.12.3.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	distutils-r1	372bbe39047c0a2550319a3a82f3e063	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	ltprune	2770eed66a9b8ef944714cd0e968182e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	e9350ec46bb5c9f3504b4fbe8b8d8987	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	virtualx	171580f737f5aaf18fcb456548588066	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	distutils-r1	372bbe39047c0a2550319a3a82f3e063	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	ltprune	2770eed66a9b8ef944714cd0e968182e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	e9350ec46bb5c9f3504b4fbe8b8d8987	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	virtualx	3a3c4637ea6d5a2113707a644766337c	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=3f0f8094a748b3d236d67aef162d32fe
diff --git a/metadata/md5-cache/sci-libs/scikits_image-0.13.0 b/metadata/md5-cache/sci-libs/scikits_image-0.13.0
index 14712af0d7a3..31d2a8d80f98 100644
--- a/metadata/md5-cache/sci-libs/scikits_image-0.13.0
+++ b/metadata/md5-cache/sci-libs/scikits_image-0.13.0
@@ -10,5 +10,5 @@ RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python
 REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 )
 SLOT=0
 SRC_URI=mirror://pypi/s/scikit-image/scikit-image-0.13.0.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	distutils-r1	372bbe39047c0a2550319a3a82f3e063	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	ltprune	2770eed66a9b8ef944714cd0e968182e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	e9350ec46bb5c9f3504b4fbe8b8d8987	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	virtualx	171580f737f5aaf18fcb456548588066	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	distutils-r1	372bbe39047c0a2550319a3a82f3e063	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	ltprune	2770eed66a9b8ef944714cd0e968182e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	e9350ec46bb5c9f3504b4fbe8b8d8987	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	virtualx	3a3c4637ea6d5a2113707a644766337c	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=5d1f2858acaa9793db4c4c63d08f7ad3
diff --git a/metadata/md5-cache/sci-libs/vtk-6.1.0-r4 b/metadata/md5-cache/sci-libs/vtk-6.1.0-r4
index 56198878b000..435d3439420a 100644
--- a/metadata/md5-cache/sci-libs/vtk-6.1.0-r4
+++ b/metadata/md5-cache/sci-libs/vtk-6.1.0-r4
@@ -11,5 +11,5 @@ REQUIRED_USE=all-modules? ( python xdmf2 ) java? ( qt5 ) python? ( python_target
 RESTRICT=test
 SLOT=0
 SRC_URI=https://www.vtk.org/files/release/6.1/VTK-6.1.0.tar.gz doc? ( https://www.vtk.org/files/release/6.1/vtkDocHtml-6.1.0.tar.gz ) test? ( https://www.vtk.org/files/release/6.1/VTKData-6.1.0.tar.gz https://www.vtk.org/files/release/6.1/VTKLargeData-6.1.0.tar.gz )
-_eclasses_=cmake-utils	202a2becc86cb78ba14baad148d06759	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	python-single-r1	317a2557b4d7319a7418225f65accf77	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	qmake-utils	990448b067cb3cfe1443bc25fb57239c	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	virtualx	171580f737f5aaf18fcb456548588066	webapp	a76ebd3cb5649737496e8238992dd7ca	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=cmake-utils	202a2becc86cb78ba14baad148d06759	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	python-single-r1	317a2557b4d7319a7418225f65accf77	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	qmake-utils	990448b067cb3cfe1443bc25fb57239c	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	virtualx	3a3c4637ea6d5a2113707a644766337c	webapp	a76ebd3cb5649737496e8238992dd7ca	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=ac74e4c339060d531dabfda8ba8d190a
diff --git a/metadata/md5-cache/sci-libs/vtk-7.1.0 b/metadata/md5-cache/sci-libs/vtk-7.1.0
index 287ce9148253..dbfaa644f413 100644
--- a/metadata/md5-cache/sci-libs/vtk-7.1.0
+++ b/metadata/md5-cache/sci-libs/vtk-7.1.0
@@ -11,5 +11,5 @@ REQUIRED_USE=all-modules? ( python xdmf2 boost ) java? ( qt5 ) python? ( python_
 RESTRICT=test
 SLOT=0
 SRC_URI=https://www.vtk.org/files/release/7.1/VTK-7.1.0.tar.gz doc? ( https://www.vtk.org/files/release/7.1/vtkDocHtml-7.1.0.tar.gz ) test? ( https://www.vtk.org/files/release/7.1/VTKData-7.1.0.tar.gz https://www.vtk.org/files/release/7.1/VTKLargeData-7.1.0.tar.gz )
-_eclasses_=cmake-utils	202a2becc86cb78ba14baad148d06759	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	python-single-r1	317a2557b4d7319a7418225f65accf77	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	qmake-utils	990448b067cb3cfe1443bc25fb57239c	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	virtualx	171580f737f5aaf18fcb456548588066	webapp	a76ebd3cb5649737496e8238992dd7ca	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=cmake-utils	202a2becc86cb78ba14baad148d06759	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	python-single-r1	317a2557b4d7319a7418225f65accf77	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	qmake-utils	990448b067cb3cfe1443bc25fb57239c	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	versionator	c80ccf29e90adea7c5cae94b42eb76d0	virtualx	3a3c4637ea6d5a2113707a644766337c	webapp	a76ebd3cb5649737496e8238992dd7ca	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=57ef88ce3eaaca72079c90aa63f19a47