gentoo resync : 27.10.2018

19 files changed, 53 insertions, 68 deletions

diff --git a/metadata/md5-cache/sci-chemistry/Manifest.gz b/metadata/md5-cache/sci-chemistry/Manifest.gz
index 27fb0b14303e..0f620271ff29 100644
--- a/metadata/md5-cache/sci-chemistry/Manifest.gz
+++ b/metadata/md5-cache/sci-chemistry/Manifest.gz
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2016.2 b/metadata/md5-cache/sci-chemistry/gromacs-2016.2
index 335e472aa2ad..7f4c75ce02e5 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2016.2
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2016.2
@@ -1,14 +1,14 @@
 DEFINED_PHASES=compile configure install postinst prepare pretend test unpack
-DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-libs/tinyxml2 dev-util/ninja >=dev-util/cmake-3.9.6
+DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( <sys-apps/hwloc-2 ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-libs/tinyxml2 dev-util/ninja >=dev-util/cmake-3.9.6
 DESCRIPTION=The ultimate molecular dynamics simulation package
 EAPI=6
 HOMEPAGE=http://www.gromacs.org/
 IUSE=X blas cuda +doc -double-precision +fftw +hwloc lapack mkl mpi +offensive openmp +single-precision test +threads +tng cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2
 KEYWORDS=amd64 arm x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
 LICENSE=LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )
-RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
+RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( <sys-apps/hwloc-2 ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
 REQUIRED_USE=|| ( single-precision double-precision ) cuda? ( single-precision ) mkl? ( !blas !fftw !lapack )
 SLOT=0/2016.2
 SRC_URI=ftp://ftp.gromacs.org/pub/gromacs/gromacs-2016.2.tar.gz test? ( http://gerrit.gromacs.org/download/regressiontests-2016.2.tar.gz )
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-_md5_=73270c55dd4f7113d1e8e278cf4be737
+_md5_=f7ac23698680faf20fa93d11dbe806d0
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2016.5 b/metadata/md5-cache/sci-chemistry/gromacs-2016.5
index 6a70d882f95a..b763fb1f6684 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2016.5
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2016.5
@@ -1,14 +1,14 @@
 DEFINED_PHASES=compile configure install postinst prepare pretend test unpack
-DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-libs/tinyxml2 dev-util/ninja >=dev-util/cmake-3.9.6
+DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( <sys-apps/hwloc-2 ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-libs/tinyxml2 dev-util/ninja >=dev-util/cmake-3.9.6
 DESCRIPTION=The ultimate molecular dynamics simulation package
 EAPI=6
 HOMEPAGE=http://www.gromacs.org/
 IUSE=X blas cuda +doc -double-precision +fftw +hwloc lapack mkl mpi +offensive openmp +single-precision test +threads +tng cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2
-KEYWORDS=~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
+KEYWORDS=~amd64 ~arm x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
 LICENSE=LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )
-RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
+RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( <sys-apps/hwloc-2 ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
 REQUIRED_USE=|| ( single-precision double-precision ) cuda? ( single-precision ) mkl? ( !blas !fftw !lapack )
 SLOT=0/2016.5
 SRC_URI=ftp://ftp.gromacs.org/pub/gromacs/gromacs-2016.5.tar.gz test? ( http://gerrit.gromacs.org/download/regressiontests-2016.5.tar.gz )
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-_md5_=73069a3501e9bd0cc41da4d01fe91c59
+_md5_=64432aba1913378ec3cb0dce1afac591
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2016.9999 b/metadata/md5-cache/sci-chemistry/gromacs-2016.9999
index dc5e3b5d307f..07bc914bcd0b 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2016.9999
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2016.9999
@@ -1,12 +1,12 @@
 DEFINED_PHASES=compile configure install postinst prepare pretend test unpack
-DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-libs/tinyxml2 dev-util/ninja >=dev-util/cmake-3.9.6 >=dev-vcs/git-1.8.2.1[curl]
+DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( <sys-apps/hwloc-2 ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-libs/tinyxml2 dev-util/ninja >=dev-util/cmake-3.9.6 >=dev-vcs/git-1.8.2.1[curl]
 DESCRIPTION=The ultimate molecular dynamics simulation package
 EAPI=6
 HOMEPAGE=http://www.gromacs.org/
 IUSE=X blas cuda +doc -double-precision +fftw +hwloc lapack mkl mpi +offensive openmp +single-precision test +threads +tng cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2
 LICENSE=LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )
-RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
+RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( <sys-apps/hwloc-2 ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
 REQUIRED_USE=|| ( single-precision double-precision ) cuda? ( single-precision ) mkl? ( !blas !fftw !lapack )
 SLOT=0/2016.9999
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-_md5_=3495d5feff978b22807c08c0c4c8c03c
+_md5_=a8ad0a6c89e69fd0d8077505e2e32b92
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2018.2 b/metadata/md5-cache/sci-chemistry/gromacs-2018.2
deleted file mode 100644
index 31d11ae91f4f..000000000000
--- a/metadata/md5-cache/sci-chemistry/gromacs-2018.2
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install postinst prepare pretend test unpack
-DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-util/ninja >=dev-util/cmake-3.9.6
-DESCRIPTION=The ultimate molecular dynamics simulation package
-EAPI=6
-HOMEPAGE=http://www.gromacs.org/
-IUSE=X blas cuda +doc -double-precision +fftw +hwloc lapack mkl mpi +offensive opencl openmp +single-precision test +threads +tng cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2
-KEYWORDS=~alpha ~amd64 ~arm ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
-LICENSE=LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )
-RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
-REQUIRED_USE=|| ( single-precision double-precision ) cuda? ( single-precision ) cuda? ( !opencl ) mkl? ( !blas !fftw !lapack )
-SLOT=0/2018.2
-SRC_URI=ftp://ftp.gromacs.org/pub/gromacs/gromacs-2018.2.tar.gz test? ( http://gerrit.gromacs.org/download/regressiontests-2018.2.tar.gz )
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diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2018.3 b/metadata/md5-cache/sci-chemistry/gromacs-2018.3
index 5986810267f1..1dd19991b121 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2018.3
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2018.3
@@ -1,14 +1,14 @@
 DEFINED_PHASES=compile configure install postinst prepare pretend test unpack
-DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-util/ninja >=dev-util/cmake-3.9.6
+DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( <sys-apps/hwloc-2 ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-util/ninja >=dev-util/cmake-3.9.6
 DESCRIPTION=The ultimate molecular dynamics simulation package
 EAPI=6
 HOMEPAGE=http://www.gromacs.org/
 IUSE=X blas cuda +doc -double-precision +fftw +hwloc lapack mkl mpi +offensive opencl openmp +single-precision test +threads +tng cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2
-KEYWORDS=~alpha ~amd64 ~arm ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
+KEYWORDS=~amd64 ~arm x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
 LICENSE=LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )
-RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
+RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( <sys-apps/hwloc-2 ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
 REQUIRED_USE=|| ( single-precision double-precision ) cuda? ( single-precision ) cuda? ( !opencl ) mkl? ( !blas !fftw !lapack )
 SLOT=0/2018.3
 SRC_URI=ftp://ftp.gromacs.org/pub/gromacs/gromacs-2018.3.tar.gz test? ( http://gerrit.gromacs.org/download/regressiontests-2018.3.tar.gz )
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+_md5_=9a1a64d42c843a8cca4180d527ce532e
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2018.9999 b/metadata/md5-cache/sci-chemistry/gromacs-2018.9999
index 755048f6dc91..b9da98f6779c 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2018.9999
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2018.9999
@@ -1,12 +1,12 @@
 DEFINED_PHASES=compile configure install postinst prepare pretend test unpack
-DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-util/ninja >=dev-util/cmake-3.9.6 >=dev-vcs/git-1.8.2.1[curl]
+DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( <sys-apps/hwloc-2 ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-util/ninja >=dev-util/cmake-3.9.6 >=dev-vcs/git-1.8.2.1[curl]
 DESCRIPTION=The ultimate molecular dynamics simulation package
 EAPI=6
 HOMEPAGE=http://www.gromacs.org/
 IUSE=X blas cuda +doc -double-precision +fftw +hwloc lapack mkl mpi +offensive opencl openmp +single-precision test +threads +tng cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2
 LICENSE=LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )
-RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
+RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( <sys-apps/hwloc-2 ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
 REQUIRED_USE=|| ( single-precision double-precision ) cuda? ( single-precision ) cuda? ( !opencl ) mkl? ( !blas !fftw !lapack )
 SLOT=0/2018.9999
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-_md5_=9999da568916ce3d7d045996d0fae5df
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diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2019.9999 b/metadata/md5-cache/sci-chemistry/gromacs-2019.9999
new file mode 100644
index 000000000000..105a5dc6d004
--- /dev/null
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2019.9999
@@ -0,0 +1,12 @@
+DEFINED_PHASES=compile configure install postinst prepare pretend setup test unpack
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+DESCRIPTION=The ultimate molecular dynamics simulation package
+EAPI=6
+HOMEPAGE=http://www.gromacs.org/
+IUSE=X blas cuda +doc -double-precision +fftw +gmxapi +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +single-precision test +threads +tng cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2
+LICENSE=LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )
+RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.14 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) lmfit? ( sci-libs/lmfit ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
+REQUIRED_USE=|| ( single-precision double-precision ) cuda? ( single-precision ) cuda? ( !opencl ) mkl? ( !blas !fftw !lapack )
+SLOT=0/2019.9999
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diff --git a/metadata/md5-cache/sci-chemistry/gromacs-2018.1 b/metadata/md5-cache/sci-chemistry/gromacs-2019_beta1
index 0b307782cd65..452cc0bb0cc9 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-2018.1
+++ b/metadata/md5-cache/sci-chemistry/gromacs-2019_beta1
@@ -1,14 +1,14 @@
 DEFINED_PHASES=compile configure install postinst prepare pretend test unpack
-DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-util/ninja >=dev-util/cmake-3.9.6
+DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.14 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) lmfit? ( sci-libs/lmfit ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-python/sphinx media-gfx/mscgen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-util/ninja >=dev-util/cmake-3.9.6
 DESCRIPTION=The ultimate molecular dynamics simulation package
 EAPI=6
 HOMEPAGE=http://www.gromacs.org/
-IUSE=X blas cuda +doc -double-precision +fftw +hwloc lapack mkl mpi +offensive opencl openmp +single-precision test +threads +tng cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2
-KEYWORDS=~alpha ~amd64 ~arm ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
+IUSE=X blas cuda +doc -double-precision +fftw +gmxapi +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +single-precision test +threads +tng cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2
+KEYWORDS=~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
 LICENSE=LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )
-RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
+RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.14 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) lmfit? ( sci-libs/lmfit ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
 REQUIRED_USE=|| ( single-precision double-precision ) cuda? ( single-precision ) cuda? ( !opencl ) mkl? ( !blas !fftw !lapack )
-SLOT=0/2018.1
-SRC_URI=ftp://ftp.gromacs.org/pub/gromacs/gromacs-2018.1.tar.gz test? ( http://gerrit.gromacs.org/download/regressiontests-2018.1.tar.gz )
+SLOT=0/2019_beta1
+SRC_URI=ftp://ftp.gromacs.org/pub/gromacs/gromacs-2019-beta1.tar.gz test? ( http://gerrit.gromacs.org/download/regressiontests-2019-beta1.tar.gz )
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-_md5_=48c913af6e554e0dce78bff52433778a
+_md5_=387706ee036d1ec7c2fc76da94ef3f60
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-5.1.3 b/metadata/md5-cache/sci-chemistry/gromacs-5.1.3
index 197ecf94d253..2235b0e22171 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-5.1.3
+++ b/metadata/md5-cache/sci-chemistry/gromacs-5.1.3
@@ -4,11 +4,11 @@ DESCRIPTION=The ultimate molecular dynamics simulation package
 EAPI=6
 HOMEPAGE=http://www.gromacs.org/
 IUSE=X blas boost cuda +doc -double-precision +fftw lapack mkl mpi +offensive openmp +single-precision test +threads +tng cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2
-KEYWORDS=~alpha ~amd64 ~arm ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
+KEYWORDS=~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
 LICENSE=LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )
 RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) boost? ( >=dev-libs/boost-1.55 ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
 REQUIRED_USE=|| ( single-precision double-precision ) cuda? ( single-precision ) mkl? ( !blas !fftw !lapack )
 SLOT=0/5.1.3
 SRC_URI=ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.1.3.tar.gz test? ( http://gerrit.gromacs.org/download/regressiontests-5.1.3.tar.gz )
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-_md5_=7cdd305e135195a36cbccdcab09c4699
+_md5_=88cc3767d0445a9f65d558c8e48725e9
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-5.1.9999 b/metadata/md5-cache/sci-chemistry/gromacs-5.1.9999
index d03b3da608a6..810c8e5aa306 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-5.1.9999
+++ b/metadata/md5-cache/sci-chemistry/gromacs-5.1.9999
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 REQUIRED_USE=|| ( single-precision double-precision ) cuda? ( single-precision ) mkl? ( !blas !fftw !lapack )
 SLOT=0/5.1.9999
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-_md5_=7cdd305e135195a36cbccdcab09c4699
+_md5_=88cc3767d0445a9f65d558c8e48725e9
diff --git a/metadata/md5-cache/sci-chemistry/gromacs-9999 b/metadata/md5-cache/sci-chemistry/gromacs-9999
index 20ebc837f57a..110d88d6c047 100644
--- a/metadata/md5-cache/sci-chemistry/gromacs-9999
+++ b/metadata/md5-cache/sci-chemistry/gromacs-9999
@@ -1,12 +1,12 @@
 DEFINED_PHASES=compile configure install postinst prepare pretend test unpack
-DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-util/ninja >=dev-util/cmake-3.9.6 >=dev-vcs/git-1.8.2.1[curl]
+DEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.14 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) lmfit? ( sci-libs/lmfit ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi ) virtual/pkgconfig doc? ( app-doc/doxygen dev-python/sphinx media-gfx/mscgen dev-texlive/texlive-latex dev-texlive/texlive-latexextra media-gfx/imagemagick ) dev-util/ninja >=dev-util/cmake-3.9.6 >=dev-vcs/git-1.8.2.1[curl]
 DESCRIPTION=The ultimate molecular dynamics simulation package
 EAPI=6
 HOMEPAGE=http://www.gromacs.org/
-IUSE=X blas cuda +doc -double-precision +fftw +hwloc lapack mkl mpi +offensive openmp +single-precision test +threads +tng cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2
+IUSE=X blas cuda +doc -double-precision +fftw +gmxapi +hwloc lapack +lmfit mkl mpi +offensive opencl openmp +single-precision test +threads +tng cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2
 LICENSE=LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )
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-REQUIRED_USE=|| ( single-precision double-precision ) cuda? ( single-precision ) mkl? ( !blas !fftw !lapack )
+RDEPEND=X? ( x11-libs/libX11 x11-libs/libSM x11-libs/libICE ) blas? ( virtual/blas ) cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.14 ) opencl? ( virtual/opencl ) fftw? ( sci-libs/fftw:3.0 ) hwloc? ( sys-apps/hwloc ) lapack? ( virtual/lapack ) lmfit? ( sci-libs/lmfit ) mkl? ( sci-libs/mkl ) mpi? ( virtual/mpi )
+REQUIRED_USE=|| ( single-precision double-precision ) cuda? ( single-precision ) cuda? ( !opencl ) mkl? ( !blas !fftw !lapack )
 SLOT=0/9999
 _eclasses_=bash-completion-r1	47a7402d95930413ce25ba8d857339bb	cmake-utils	f0bc1c175684130a76ab6c17f575d820	cuda	bb861e5221b7272ac90c2f12791c1e66	desktop	b1d22ac8bdd4679ab79c71aca235009d	eapi7-ver	756b3f27d8e46131d5cf3c51bd876446	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	git-r3	0d4635eeb5a96cd5315597a47eba25c9	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	readme.gentoo-r1	22ae82e140bdd95d17a34fd5fd733190	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	93b2dfbb00a09161e1e7f6360c0f7f6b
-_md5_=b85be5a83f00ecdf56154f19c818e6aa
+_md5_=277bb1fdeddcc2dedabec04c11f1664a
diff --git a/metadata/md5-cache/sci-chemistry/jmol-12.0.45-r1 b/metadata/md5-cache/sci-chemistry/jmol-12.0.45-r1
index 85afd42a08b8..c188cea1ce2f 100644
--- a/metadata/md5-cache/sci-chemistry/jmol-12.0.45-r1
+++ b/metadata/md5-cache/sci-chemistry/jmol-12.0.45-r1
@@ -9,5 +9,5 @@ LICENSE=LGPL-2.1
 RDEPEND=>=virtual/jre-1.4 dev-java/commons-cli:1 dev-java/itext:0 sci-libs/jmol-acme:0 sci-libs/vecmath-objectclub:0 >=dev-java/java-config-2.2.0-r3
 SLOT=0
 SRC_URI=mirror://sourceforge/jmol/Jmol-12.0.45-full.tar.gz https://dev.gentoo.org/~jlec/distfiles/jmol-selfSignedCertificate.store.tar
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	java-ant-2	ea15ab9e838d1062abd6b53de2045d50	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748	webapp	6ae2395d7f341093c36057cb4f69101a
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 _md5_=e5be2ed02e2c454e5aae9177da649849
diff --git a/metadata/md5-cache/sci-chemistry/jmol-12.2.27-r1 b/metadata/md5-cache/sci-chemistry/jmol-12.2.27-r1
index 4d331378e8f9..e274e6e6d185 100644
--- a/metadata/md5-cache/sci-chemistry/jmol-12.2.27-r1
+++ b/metadata/md5-cache/sci-chemistry/jmol-12.2.27-r1
@@ -9,5 +9,5 @@ LICENSE=LGPL-2.1
 RDEPEND=>=virtual/jre-1.5 dev-java/commons-cli:1 dev-java/itext:0 sci-libs/jmol-acme:0 sci-libs/vecmath-objectclub:0 sci-libs/naga >=dev-java/java-config-2.2.0-r3
 SLOT=0
 SRC_URI=mirror://sourceforge/jmol/Jmol-12.2.27-full.tar.gz https://dev.gentoo.org/~jlec/distfiles/jmol-selfSignedCertificate.store.tar
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	java-ant-2	ea15ab9e838d1062abd6b53de2045d50	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748	webapp	6ae2395d7f341093c36057cb4f69101a
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	java-ant-2	ea15ab9e838d1062abd6b53de2045d50	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	5f384596a963479c012fc4aef5a89a19	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748	webapp	6ae2395d7f341093c36057cb4f69101a
 _md5_=de2dedca3cc13b31429da06c08257045
diff --git a/metadata/md5-cache/sci-chemistry/pymol-plugins-caver-2.1.2 b/metadata/md5-cache/sci-chemistry/pymol-plugins-caver-2.1.2
index 78f63e113833..1d3898793cc6 100644
--- a/metadata/md5-cache/sci-chemistry/pymol-plugins-caver-2.1.2
+++ b/metadata/md5-cache/sci-chemistry/pymol-plugins-caver-2.1.2
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
 RESTRICT=fetch
 SLOT=0
 SRC_URI=Caver2_1_2_pymol_plugin.zip
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multibuild	40fe59465edacd730c644ec2bc197809	multilib	b2f01ad412baf81650c23fcf0975fa33	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	12114a2a9aab35b93efc037a196b3234	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	java-utils-2	5f384596a963479c012fc4aef5a89a19	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multibuild	40fe59465edacd730c644ec2bc197809	multilib	b2f01ad412baf81650c23fcf0975fa33	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	12114a2a9aab35b93efc037a196b3234	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748
 _md5_=ea9626bbd9e0bdbb979e5d6058e8c5f5
diff --git a/metadata/md5-cache/sci-chemistry/tinker-8.2.1 b/metadata/md5-cache/sci-chemistry/tinker-8.2.1
index 19f6f99ed4c7..c47eeab99783 100644
--- a/metadata/md5-cache/sci-chemistry/tinker-8.2.1
+++ b/metadata/md5-cache/sci-chemistry/tinker-8.2.1
@@ -10,5 +10,5 @@ RDEPEND=>=sci-libs/fftw-3.2.2-r1[fortran,threads] dev-libs/maloc !sys-apps/bar !
 RESTRICT=mirror
 SLOT=0
 SRC_URI=http://dasher.wustl.edu/tinker/downloads/tinker-8.2.1.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	fortran-2	68fcf50e02640de6eb5698ea038d9537	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	fortran-2	68fcf50e02640de6eb5698ea038d9537	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	5f384596a963479c012fc4aef5a89a19	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748
 _md5_=f5c8e4b651fff9dc3a4d051350f5c72f
diff --git a/metadata/md5-cache/sci-chemistry/tm-align-20140601 b/metadata/md5-cache/sci-chemistry/tm-align-20140601
deleted file mode 100644
index 277f1d2c3e7d..000000000000
--- a/metadata/md5-cache/sci-chemistry/tm-align-20140601
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile configure install prepare setup test
-DEPEND=sys-devel/make >=dev-util/cmake-3.9.6 virtual/fortran
-DESCRIPTION=Quick & Accurate Structural Alignment
-EAPI=5
-HOMEPAGE=http://zhanglab.ccmb.med.umich.edu/TM-align/
-IUSE=static custom-cflags
-KEYWORDS=amd64 ppc ppc64 x86 ~amd64-linux ~x86-linux
-LICENSE=tm-align
-RDEPEND=virtual/fortran
-SLOT=0
-SRC_URI=http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools20140601.tar.gz
-_eclasses_=cmake-utils	f0bc1c175684130a76ab6c17f575d820	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	fortran-2	68fcf50e02640de6eb5698ea038d9537	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	93b2dfbb00a09161e1e7f6360c0f7f6b
-_md5_=64e4ccba0de1d22ed789ce34e6a78765
diff --git a/metadata/md5-cache/sci-chemistry/tm-align-20150914 b/metadata/md5-cache/sci-chemistry/tm-align-20150914
index cf7429298ae6..f5f67781d5c4 100644
--- a/metadata/md5-cache/sci-chemistry/tm-align-20150914
+++ b/metadata/md5-cache/sci-chemistry/tm-align-20150914
@@ -4,10 +4,10 @@ DESCRIPTION=Quick & Accurate Structural Alignment
 EAPI=6
 HOMEPAGE=http://zhanglab.ccmb.med.umich.edu/TM-align/
 IUSE=custom-cflags static
-KEYWORDS=~amd64 ppc ppc64 ~x86 ~amd64-linux ~x86-linux
+KEYWORDS=amd64 ppc ppc64 x86 ~amd64-linux ~x86-linux
 LICENSE=tm-align
 RDEPEND=virtual/fortran
 SLOT=0
 SRC_URI=http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools20150914.tar.gz
 _eclasses_=cmake-utils	f0bc1c175684130a76ab6c17f575d820	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	fortran-2	68fcf50e02640de6eb5698ea038d9537	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	93b2dfbb00a09161e1e7f6360c0f7f6b
-_md5_=0d96f6c5e40e3e66fd57af81a19fe028
+_md5_=b2861c00ea1789213f819316513af081
diff --git a/metadata/md5-cache/sci-chemistry/votca-csg-1.4.1 b/metadata/md5-cache/sci-chemistry/votca-csg-1.4.1
index 5b99de277d94..aa0c388605bb 100644
--- a/metadata/md5-cache/sci-chemistry/votca-csg-1.4.1
+++ b/metadata/md5-cache/sci-chemistry/votca-csg-1.4.1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install postinst prepare test unpack
-DEPEND=~sci-libs/votca-tools-1.4.1 gromacs? ( sci-chemistry/gromacs:= ) hdf5? ( sci-libs/hdf5 ) dev-lang/perl app-shells/bash:* doc? ( app-doc/doxygen[dot] dev-texlive/texlive-latexextra virtual/latex-base dev-tex/pgf ) >=app-text/txt2tags-2.5 virtual/pkgconfig dev-util/ninja >=dev-util/cmake-3.9.6
+DEPEND=~sci-libs/votca-tools-1.4.1 gromacs? ( <sci-chemistry/gromacs-2019:= ) hdf5? ( sci-libs/hdf5 ) dev-lang/perl app-shells/bash:* doc? ( app-doc/doxygen[dot] dev-texlive/texlive-latexextra virtual/latex-base dev-tex/pgf ) >=app-text/txt2tags-2.5 virtual/pkgconfig dev-util/ninja >=dev-util/cmake-3.9.6
 DESCRIPTION=Votca coarse-graining engine
 EAPI=6
 HOMEPAGE=http://www.votca.org
@@ -7,8 +7,8 @@ IUSE=doc examples extras +gromacs hdf5
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-macos
 LICENSE=Apache-2.0
 PDEPEND=extras? ( ~sci-chemistry/votca-csgapps-1.4.1 )
-RDEPEND=~sci-libs/votca-tools-1.4.1 gromacs? ( sci-chemistry/gromacs:= ) hdf5? ( sci-libs/hdf5 ) dev-lang/perl app-shells/bash:*
+RDEPEND=~sci-libs/votca-tools-1.4.1 gromacs? ( <sci-chemistry/gromacs-2019:= ) hdf5? ( sci-libs/hdf5 ) dev-lang/perl app-shells/bash:*
 SLOT=0
 SRC_URI=https://github.com/votca/csg/archive/v1.4.1.tar.gz -> votca-csg-1.4.1.tar.gz doc? ( https://github.com/votca/csg-manual/releases/download/v1.4.1/votca-csg-manual-1.4.1.pdf ) examples? ( https://github.com/votca/csg-tutorials/archive/v1.4.1.tar.gz -> votca-csg-tutorials-1.4.1.tar.gz )
 _eclasses_=bash-completion-r1	47a7402d95930413ce25ba8d857339bb	cmake-utils	f0bc1c175684130a76ab6c17f575d820	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	b2f01ad412baf81650c23fcf0975fa33	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	f164325a2cdb5b3ea39311d483988861	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	93b2dfbb00a09161e1e7f6360c0f7f6b
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