gentoo resync : 18.12.2017

5 files changed, 9 insertions, 22 deletions

diff --git a/metadata/md5-cache/sci-chemistry/Manifest.gz b/metadata/md5-cache/sci-chemistry/Manifest.gz
index 0381f14b7bb1..d2ace3858a5f 100644
--- a/metadata/md5-cache/sci-chemistry/Manifest.gz
+++ b/metadata/md5-cache/sci-chemistry/Manifest.gz
diff --git a/metadata/md5-cache/sci-chemistry/namd-2.10 b/metadata/md5-cache/sci-chemistry/namd-2.10
index b8255bc550dc..fc103673374b 100644
--- a/metadata/md5-cache/sci-chemistry/namd-2.10
+++ b/metadata/md5-cache/sci-chemistry/namd-2.10
@@ -1,13 +1,13 @@
 DEFINED_PHASES=compile configure install nofetch postinst prepare
-DEPEND=>=sys-cluster/charm-6.5.1-r2 sci-libs/fftw:3.0 dev-lang/tcl:0= app-shells/tcsh
+DEPEND=>=sys-cluster/charm-6.5.1-r2 sci-libs/fftw:3.0 dev-lang/tcl:0= virtual/pkgconfig app-shells/tcsh
 DESCRIPTION=A powerful and highly parallelized molecular dynamics code
-EAPI=5
+EAPI=6
 HOMEPAGE=http://www.ks.uiuc.edu/Research/namd/
 KEYWORDS=~amd64
 LICENSE=namd
 RDEPEND=>=sys-cluster/charm-6.5.1-r2 sci-libs/fftw:3.0 dev-lang/tcl:0=
 RESTRICT=fetch
 SLOT=0
-SRC_URI=NAMD_2.10_Source.tar.gz
+SRC_URI=NAMD_2.10_Source.tar
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
-_md5_=1e1c9277696a47a8356482167a1c6d08
+_md5_=c0a6bd40eda6f0ef0a0c9110ad0e4b7b
diff --git a/metadata/md5-cache/sci-chemistry/namd-2.9-r1 b/metadata/md5-cache/sci-chemistry/namd-2.9-r1
deleted file mode 100644
index afffd6246232..000000000000
--- a/metadata/md5-cache/sci-chemistry/namd-2.9-r1
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile configure install nofetch postinst prepare
-DEPEND=>=sys-cluster/charm-6.5.1-r2 sci-libs/fftw:3.0 dev-lang/tcl:0= app-shells/tcsh
-DESCRIPTION=A powerful and highly parallelized molecular dynamics code
-EAPI=5
-HOMEPAGE=http://www.ks.uiuc.edu/Research/namd/
-KEYWORDS=~amd64
-LICENSE=namd
-RDEPEND=>=sys-cluster/charm-6.5.1-r2 sci-libs/fftw:3.0 dev-lang/tcl:0=
-RESTRICT=fetch
-SLOT=0
-SRC_URI=NAMD_2.9_Source.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
-_md5_=0244e38e527e9f8fb4d418543c985848
diff --git a/metadata/md5-cache/sci-chemistry/tinker-7.1.2 b/metadata/md5-cache/sci-chemistry/tinker-8.2.1
index 1334f0153b5d..ec544b4f837a 100644
--- a/metadata/md5-cache/sci-chemistry/tinker-7.1.2
+++ b/metadata/md5-cache/sci-chemistry/tinker-8.2.1
@@ -1,7 +1,7 @@
 DEFINED_PHASES=compile install preinst prepare setup test
 DEPEND=>=virtual/jdk-1.6 virtual/fortran java? ( >=dev-java/java-config-2.2.0-r3 )
 DESCRIPTION=Molecular modeling package that includes force fields, such as AMBER and CHARMM
-EAPI=5
+EAPI=6
 HOMEPAGE=http://dasher.wustl.edu/tinker/
 IUSE=examples elibc_FreeBSD java
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
@@ -9,6 +9,6 @@ LICENSE=Tinker
 RDEPEND=>=sci-libs/fftw-3.2.2-r1[fortran,threads] dev-libs/maloc !sys-apps/bar !dev-util/diffuse >=virtual/jre-1.6 virtual/fortran java? ( >=dev-java/java-config-2.2.0-r3 )
 RESTRICT=mirror
 SLOT=0
-SRC_URI=http://dasher.wustl.edu/tinker/downloads/tinker-7.1.2.tar.gz
+SRC_URI=http://dasher.wustl.edu/tinker/downloads/tinker-8.2.1.tar.gz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	fortran-2	9e7f20c99213f0627ff7f873d4aaa25d	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af	versionator	c80ccf29e90adea7c5cae94b42eb76d0
-_md5_=827bba5138af9b4f31f808e8fbc15c77
+_md5_=f5c8e4b651fff9dc3a4d051350f5c72f
diff --git a/metadata/md5-cache/sci-chemistry/xdsstat-bin-140225 b/metadata/md5-cache/sci-chemistry/xdsstat-bin-171217
index 95612d4ebd7e..0fec9bc12f35 100644
--- a/metadata/md5-cache/sci-chemistry/xdsstat-bin-140225
+++ b/metadata/md5-cache/sci-chemistry/xdsstat-bin-171217
@@ -1,6 +1,6 @@
 DEFINED_PHASES=install
 DESCRIPTION=Prints various statistics (that are not available from XDS itself)
-EAPI=5
+EAPI=6
 HOMEPAGE=http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/XDSSTAT
 KEYWORDS=~amd64 ~amd64-linux
 LICENSE=all-rights-reserved
@@ -8,4 +8,4 @@ RDEPEND=sci-chemistry/xds-bin
 RESTRICT=mirror
 SLOT=0
 SRC_URI=amd64? ( ftp://turn5.biologie.uni-konstanz.de/pub/xdsstat-linux64.bz2 ) x86? ( ftp://turn5.biologie.uni-konstanz.de/pub/xdsstat-linux32.bz2 )
-_md5_=507e7c579a71eb03960a08847ac16f6e
+_md5_=58b628a2a44a7ac9d9aefa0a3a8affcf