gentoo resync : 18.08.2019

36 files changed, 42 insertions, 42 deletions

diff --git a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
index fb1cf2a4074c..8b4f324f2bd9 100644
--- a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
+++ b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
@@ -9,5 +9,5 @@ LICENSE=|| ( Artistic GPL-1+ )
 RDEPEND=!<sci-biology/GBrowse-2.44-r1 >=sci-biology/bioperl-1.6.9 >=dev-perl/Bio-Graphics-2.09 >=dev-perl/GD-2.07 >=dev-perl/CGI-Session-4.02 dev-perl/IO-String dev-perl/JSON dev-perl/libwww-perl dev-perl/Statistics-Descriptive !minimal? ( dev-perl/Bio-Das >=dev-perl/Bio-SamTools-1.20 dev-perl/Crypt-SSLeay dev-perl/DB_File-Lock dev-perl/DBI mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) sqlite? ( dev-perl/DBD-SQLite ) dev-perl/FCGI dev-perl/File-NFSLock dev-perl/GD-SVG dev-perl/Net-OpenID-Consumer dev-perl/Net-SMTP-SSL ) dev-lang/perl:=[-build(-)] >=app-admin/webapp-config-1.50.15
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/L/LD/LDS/GBrowse-2.48.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	f2e3420aed32cf1abe33b4129b842636	perl-module	71c828c354a4cddced2641dda2695de5	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	webapp	16783e418aca3ffa461d68310bf7ab12
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	20c90ae7e826995a597683580cdfcdcb	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	webapp	16783e418aca3ffa461d68310bf7ab12
 _md5_=bccaeef3292f6df307fc14fb5a2a74b2
diff --git a/metadata/md5-cache/sci-biology/HTSeq-0.9.1 b/metadata/md5-cache/sci-biology/HTSeq-0.9.1
index 55a8e086355c..b270f1717c1b 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-0.9.1
+++ b/metadata/md5-cache/sci-biology/HTSeq-0.9.1
@@ -10,5 +10,5 @@ RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_5(-
 REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 )
 SLOT=0
 SRC_URI=mirror://pypi/H/HTSeq/HTSeq-0.9.1.tar.gz
-_eclasses_=distutils-r1	9838160d624a44b2d56d1266a69fd473	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=distutils-r1	9838160d624a44b2d56d1266a69fd473	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=41aaefa741e4fde04bbda02ac66eba05
diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999
index 3ba2f2bcf70d..8283a1a580cc 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-9999
+++ b/metadata/md5-cache/sci-biology/HTSeq-9999
@@ -9,5 +9,5 @@ PROPERTIES=live
 RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)]
 REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 )
 SLOT=0
-_eclasses_=distutils-r1	9838160d624a44b2d56d1266a69fd473	git-r3	562b380fc59ae6a8622171d0acb777d1	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=distutils-r1	9838160d624a44b2d56d1266a69fd473	git-r3	562b380fc59ae6a8622171d0acb777d1	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=41aaefa741e4fde04bbda02ac66eba05
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 97a21f45548e..95ed165a1fb5 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.1 b/metadata/md5-cache/sci-biology/bamtools-2.5.1
index 22ced2c8fb3c..1ba445ec7569 100644
--- a/metadata/md5-cache/sci-biology/bamtools-2.5.1
+++ b/metadata/md5-cache/sci-biology/bamtools-2.5.1
@@ -10,5 +10,5 @@ LICENSE=MIT
 RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
 SLOT=0/2.5.1
 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.1.tar.gz -> bamtools-2.5.1.tar.gz
-_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=bddaa64daf006313f77c6152fbc41a8b
diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999
index 02fb5c06c2fc..3469ed54ea80 100644
--- a/metadata/md5-cache/sci-biology/bamtools-9999
+++ b/metadata/md5-cache/sci-biology/bamtools-9999
@@ -9,5 +9,5 @@ LICENSE=MIT
 PROPERTIES=live
 RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
 SLOT=0/9999
-_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	git-r3	562b380fc59ae6a8622171d0acb777d1	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	git-r3	562b380fc59ae6a8622171d0acb777d1	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=bddaa64daf006313f77c6152fbc41a8b
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.1 b/metadata/md5-cache/sci-biology/biopandas-0.2.1
index c6d4fb5d9699..705641f78a9e 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.2.1
+++ b/metadata/md5-cache/sci-biology/biopandas-0.2.1
@@ -10,5 +10,5 @@ RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_5(-
 REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 )
 SLOT=0
 SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.1.tar.gz
-_eclasses_=distutils-r1	9838160d624a44b2d56d1266a69fd473	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=distutils-r1	9838160d624a44b2d56d1266a69fd473	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=5a0449fad95f6d2e6b0930487808e8ef
diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-1.6.9
index 82c121260959..a892e48bc0ca 100644
--- a/metadata/md5-cache/sci-biology/bioperl-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9
@@ -11,5 +11,5 @@ RDEPEND=dev-perl/libwww-perl !minimal? ( dev-perl/Algorithm-Munkres dev-perl/Arr
 REQUIRED_USE=minimal? ( !graphviz )
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	f2e3420aed32cf1abe33b4129b842636	perl-module	71c828c354a4cddced2641dda2695de5	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	20c90ae7e826995a597683580cdfcdcb	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=be22a76392a6e5c121e4b6d388045faa
diff --git a/metadata/md5-cache/sci-biology/bioperl-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-9999-r1
index fea4ab3dbaab..a26d6adbe708 100644
--- a/metadata/md5-cache/sci-biology/bioperl-9999-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-9999-r1
@@ -9,5 +9,5 @@ PDEPEND=!minimal? ( dev-perl/Bio-ASN1-EntrezGene ) db? ( >=sci-biology/bioperl-d
 PROPERTIES=live
 RDEPEND=dev-perl/Data-Stag dev-perl/libwww-perl !minimal? ( dev-perl/Ace dev-perl/Bio-ASN1-EntrezGene dev-perl/Spreadsheet-ParseExcel dev-perl/Spreadsheet-WriteExcel >=dev-perl/XML-SAX-0.15 dev-perl/Graph dev-perl/SOAP-Lite dev-perl/Array-Compare dev-perl/SVG dev-perl/XML-Simple dev-perl/XML-Parser dev-perl/XML-Twig >=dev-perl/HTML-Parser-3.60 >=dev-perl/XML-Writer-0.4 dev-perl/Clone dev-perl/XML-DOM dev-perl/Set-Scalar dev-perl/XML-XPath dev-perl/XML-DOM-XPath dev-perl/Algorithm-Munkres dev-perl/Data-Stag dev-perl/Math-Random dev-perl/PostScript dev-perl/Convert-Binary-C dev-perl/SVG-Graph ) graphviz? ( dev-perl/GraphViz ) dev-lang/perl:=[-build(-)]
 SLOT=0
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	git-2	3aabf18eba60687bbe6855eba271f688	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	f2e3420aed32cf1abe33b4129b842636	perl-module	71c828c354a4cddced2641dda2695de5	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	git-2	3aabf18eba60687bbe6855eba271f688	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	20c90ae7e826995a597683580cdfcdcb	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=210415961127105f0fc625670ba9e423
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
index 9592ad0988a3..b00eb65ee89d 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/
 RESTRICT=test
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	f2e3420aed32cf1abe33b4129b842636	perl-module	71c828c354a4cddced2641dda2695de5	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	20c90ae7e826995a597683580cdfcdcb	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=2470d7ecf1b6ff1902a8d74057748480
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1
index 1abea6d78fa8..de587d1db312 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare test
-DEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/biosql dev-perl/Module-Build test? ( dev-perl/Data-Stag dev-perl/Sub-Uplevel dev-perl/Test-Warn dev-perl/Test-Exception virtual/perl-Test-Simple ) dev-lang/perl:=
+DEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/biosql dev-perl/Module-Build test? ( dev-perl/Data-Stag dev-perl/Sub-Uplevel dev-perl/Test-Warn dev-perl/Test-Exception virtual/perl-Test-Simple ) dev-lang/perl
 DESCRIPTION=Perl tools for bioinformatics - Perl API that accesses the BioSQL schema
 EAPI=6
 HOMEPAGE=http://www.bioperl.org/
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/
 RESTRICT=test
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz
-_eclasses_=multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	f2e3420aed32cf1abe33b4129b842636	perl-module	71c828c354a4cddced2641dda2695de5
+_eclasses_=multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	20c90ae7e826995a597683580cdfcdcb
 _md5_=dbcb977782edcacd68dddedab8e605d9
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-db-9999-r1
index 64f58d96c106..4a4f2a84d690 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-9999-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-db-9999-r1
@@ -7,5 +7,5 @@ LICENSE=Artistic GPL-2
 PROPERTIES=live
 RDEPEND=>=sci-biology/bioperl-9999 dev-perl/DBI sci-biology/biosql dev-lang/perl:=[-build(-)]
 SLOT=0
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	git-2	3aabf18eba60687bbe6855eba271f688	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	f2e3420aed32cf1abe33b4129b842636	perl-module	71c828c354a4cddced2641dda2695de5	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	git-2	3aabf18eba60687bbe6855eba271f688	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	20c90ae7e826995a597683580cdfcdcb	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=fd4229be06b3975302e9e37ca35601d2
diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
index 4e6f5aa7f0c1..a5d376f16884 100644
--- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
@@ -9,5 +9,5 @@ LICENSE=|| ( Artistic GPL-1+ )
 RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build(-)]
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	f2e3420aed32cf1abe33b4129b842636	perl-module	71c828c354a4cddced2641dda2695de5	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	20c90ae7e826995a597683580cdfcdcb	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=cb366a6a0c6cf3c12320c2d6d3551abe
diff --git a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1
index 7678d65824b7..7c827c379486 100644
--- a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1
@@ -8,5 +8,5 @@ LICENSE=Artistic GPL-2
 PROPERTIES=live
 RDEPEND=>=sci-biology/bioperl-9999 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build(-)]
 SLOT=0
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	git-2	3aabf18eba60687bbe6855eba271f688	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	f2e3420aed32cf1abe33b4129b842636	perl-module	71c828c354a4cddced2641dda2695de5	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	git-2	3aabf18eba60687bbe6855eba271f688	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	20c90ae7e826995a597683580cdfcdcb	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=025cd5fa89be402f3296160dbf755c8b
diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
index 45eb4d21c877..21710d8de413 100644
--- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 !minimal? ( dev-perl/Algorithm-Diff dev-perl
 RESTRICT=test
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	f2e3420aed32cf1abe33b4129b842636	perl-module	71c828c354a4cddced2641dda2695de5	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	20c90ae7e826995a597683580cdfcdcb	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=9caec4e5b47cbf306a1689903f2a018a
diff --git a/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-run-9999-r1
index 8dd8df2a0f9a..9c4f6e06629f 100644
--- a/metadata/md5-cache/sci-biology/bioperl-run-9999-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-run-9999-r1
@@ -9,5 +9,5 @@ PROPERTIES=live
 RDEPEND=>=sci-biology/bioperl-9999 !minimal? ( dev-perl/Algorithm-Diff dev-perl/XML-Twig dev-perl/IO-String dev-perl/IPC-Run ) dev-lang/perl:=[-build(-)]
 RESTRICT=test
 SLOT=0
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	git-2	3aabf18eba60687bbe6855eba271f688	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	f2e3420aed32cf1abe33b4129b842636	perl-module	71c828c354a4cddced2641dda2695de5	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	git-2	3aabf18eba60687bbe6855eba271f688	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	20c90ae7e826995a597683580cdfcdcb	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=26abe4f8477c1a1c22bd8515484ce1c1
diff --git a/metadata/md5-cache/sci-biology/biopython-1.68 b/metadata/md5-cache/sci-biology/biopython-1.68
index 50f93e243e8a..bc5e777b711c 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.68
+++ b/metadata/md5-cache/sci-biology/biopython-1.68
@@ -10,5 +10,5 @@ RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target
 REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_python3_5 )
 SLOT=0
 SRC_URI=http://www.biopython.org/DIST/biopython-1.68.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	distutils-r1	9838160d624a44b2d56d1266a69fd473	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	distutils-r1	9838160d624a44b2d56d1266a69fd473	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=09edbf25123b14fe83187c2577a871a0
diff --git a/metadata/md5-cache/sci-biology/diya-1.0_rc4 b/metadata/md5-cache/sci-biology/diya-1.0_rc4
index b47efc70a553..5a383af8211c 100644
--- a/metadata/md5-cache/sci-biology/diya-1.0_rc4
+++ b/metadata/md5-cache/sci-biology/diya-1.0_rc4
@@ -9,5 +9,5 @@ LICENSE=GPL-3
 RDEPEND=sci-biology/bioperl dev-perl/Data-Utilities dev-perl/XML-Simple !minimal? ( sci-biology/mummer sci-biology/glimmer sci-biology/trnascan-se sci-biology/infernal ) dev-lang/perl:=[-build(-)]
 SLOT=0
 SRC_URI=mirror://sourceforge/diyg/files/diya/diya-1.0/diya-1.0-rc4.tar.gz
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	f2e3420aed32cf1abe33b4129b842636	perl-module	71c828c354a4cddced2641dda2695de5	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	20c90ae7e826995a597683580cdfcdcb	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=5d4639d7c08c43e2c2208492508fd56c
diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1
index a81f7c47e2c6..37f083c343fe 100644
--- a/metadata/md5-cache/sci-biology/express-1.5.1
+++ b/metadata/md5-cache/sci-biology/express-1.5.1
@@ -8,5 +8,5 @@ LICENSE=Artistic
 RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sci-biology/bamtools sys-libs/zlib
 SLOT=0
 SRC_URI=http://bio.math.berkeley.edu/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz
-_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=10c478f1e1a9a533322963cf4c2e92f8
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.8 b/metadata/md5-cache/sci-biology/fasttree-2.1.8
index 278db222c94b..f162b8829d10 100644
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.8
+++ b/metadata/md5-cache/sci-biology/fasttree-2.1.8
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
 SLOT=0
 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.8.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.8.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.8.tar.gz
-_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=5a3e768febbbadcd5c8a4141dd49e11c
diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.5.1 b/metadata/md5-cache/sci-biology/foldingathome-7.5.1
index 58a40a4e7a43..7dae174083aa 100644
--- a/metadata/md5-cache/sci-biology/foldingathome-7.5.1
+++ b/metadata/md5-cache/sci-biology/foldingathome-7.5.1
@@ -9,5 +9,5 @@ RDEPEND=app-arch/bzip2 || ( dev-libs/openssl-compat:1.0.0 =dev-libs/openssl-1.0*
 RESTRICT=mirror bindist strip
 SLOT=0
 SRC_URI=https://download.foldingathome.org/releases/public/release/fahclient/centos-6.7-64bit/v7.5/fahclient_7.5.1-64bit-release.tar.bz2
-_eclasses_=estack	43ddf5aaffa7a8d0482df54d25a66a1f	multilib	1d91b03d42ab6308b5f4f6b598ed110e	systemd	71fd8d2065d102753fb9e4d20eaf3e9f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	user	f8dcb46ee7b0bcdec51dac1ef4bfdfc9	versionator	2352c3fc97241f6a02042773c8287748
+_eclasses_=estack	43ddf5aaffa7a8d0482df54d25a66a1f	multilib	1d91b03d42ab6308b5f4f6b598ed110e	systemd	71fd8d2065d102753fb9e4d20eaf3e9f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	user	00484e1be1aac73e24fca1c99557a7d6	versionator	2352c3fc97241f6a02042773c8287748
 _md5_=a1c1420f8b9044694473f469d5e750af
diff --git a/metadata/md5-cache/sci-biology/kallisto-0.43.1 b/metadata/md5-cache/sci-biology/kallisto-0.43.1
index f949c6d8f249..b14eb3f8aec4 100644
--- a/metadata/md5-cache/sci-biology/kallisto-0.43.1
+++ b/metadata/md5-cache/sci-biology/kallisto-0.43.1
@@ -8,5 +8,5 @@ LICENSE=BSD
 RDEPEND=sci-libs/hdf5:= sys-libs/zlib:=
 SLOT=0
 SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.43.1.tar.gz -> kallisto-0.43.1.tar.gz
-_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=b5fc562bf49e70db44b86bc5702ae9f2
diff --git a/metadata/md5-cache/sci-biology/kallisto-9999 b/metadata/md5-cache/sci-biology/kallisto-9999
index e86e601a97bd..c5dfd2de870c 100644
--- a/metadata/md5-cache/sci-biology/kallisto-9999
+++ b/metadata/md5-cache/sci-biology/kallisto-9999
@@ -7,5 +7,5 @@ LICENSE=BSD
 PROPERTIES=live
 RDEPEND=sci-libs/hdf5:= sys-libs/zlib:=
 SLOT=0
-_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	git-r3	562b380fc59ae6a8622171d0acb777d1	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	git-r3	562b380fc59ae6a8622171d0acb777d1	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=b5fc562bf49e70db44b86bc5702ae9f2
diff --git a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 b/metadata/md5-cache/sci-biology/meme-4.11.2_p2
index 02ae3217db3c..406572d660f7 100644
--- a/metadata/md5-cache/sci-biology/meme-4.11.2_p2
+++ b/metadata/md5-cache/sci-biology/meme-4.11.2_p2
@@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/
 REQUIRED_USE=python_targets_python2_7
 SLOT=0
 SRC_URI=http://meme-suite.org/meme-software/4.11.2/meme_4.11.2.tar.gz
-_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	estack	43ddf5aaffa7a8d0482df54d25a66a1f	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	1d91b03d42ab6308b5f4f6b598ed110e	perl-functions	f2e3420aed32cf1abe33b4129b842636	python-single-r1	3a0fc81f484bfdbd9c2b7448015a36e4	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	versionator	2352c3fc97241f6a02042773c8287748
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	estack	43ddf5aaffa7a8d0482df54d25a66a1f	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	1d91b03d42ab6308b5f4f6b598ed110e	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	python-single-r1	3a0fc81f484bfdbd9c2b7448015a36e4	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	versionator	2352c3fc97241f6a02042773c8287748
 _md5_=a4080439675628436c06de8db9f59c6e
diff --git a/metadata/md5-cache/sci-biology/pysam-0.12.0.1 b/metadata/md5-cache/sci-biology/pysam-0.12.0.1
index 5e03c4f843b1..12b8fffd3905 100644
--- a/metadata/md5-cache/sci-biology/pysam-0.12.0.1
+++ b/metadata/md5-cache/sci-biology/pysam-0.12.0.1
@@ -10,5 +10,5 @@ RDEPEND==sci-libs/htslib-1.5*:= python_targets_python2_7? ( >=dev-lang/python-2.
 REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 )
 SLOT=0
 SRC_URI=mirror://pypi/p/pysam/pysam-0.12.0.1.tar.gz
-_eclasses_=distutils-r1	9838160d624a44b2d56d1266a69fd473	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=distutils-r1	9838160d624a44b2d56d1266a69fd473	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=9b1bc42dd99cc41b191559fb7a9fa4c6
diff --git a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
index 4183b487cd3f..14afda150559 100644
--- a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
+++ b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
@@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 sys-libs/zlib
 REQUIRED_USE=cpu_flags_x86_sse4_1
 SLOT=1.4
 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-1.4.2.tar.gz
-_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	b5f01473006ccc2cd78bc3dab20fced4	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	b5f01473006ccc2cd78bc3dab20fced4	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=1b7be060ecec73f1e66596a71b90a92a
diff --git a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
index 06c7db116a0b..b91f4fd33547 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
+++ b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
@@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seqan
 REQUIRED_USE=cpu_flags_x86_sse4_1
 SLOT=0
 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-2.2.0.tar.gz
-_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	b5f01473006ccc2cd78bc3dab20fced4	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	b5f01473006ccc2cd78bc3dab20fced4	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=aaf78a04252c5e6c2b92b04c7211b73c
diff --git a/metadata/md5-cache/sci-biology/seqan-2.4.0 b/metadata/md5-cache/sci-biology/seqan-2.4.0
index 6587240cfb43..d7d2a0272e51 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.4.0
+++ b/metadata/md5-cache/sci-biology/seqan-2.4.0
@@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/s
 REQUIRED_USE=cpu_flags_x86_sse4_1
 SLOT=0
 SRC_URI=https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz
-_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	b5f01473006ccc2cd78bc3dab20fced4	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	b5f01473006ccc2cd78bc3dab20fced4	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=ca34cde2b2fc2f8692469a016bc077f6
diff --git a/metadata/md5-cache/sci-biology/seqan-9999 b/metadata/md5-cache/sci-biology/seqan-9999
index cde6f392b2d7..36e86e2d84c7 100644
--- a/metadata/md5-cache/sci-biology/seqan-9999
+++ b/metadata/md5-cache/sci-biology/seqan-9999
@@ -9,5 +9,5 @@ PROPERTIES=live
 RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2
 REQUIRED_USE=cpu_flags_x86_sse4_1
 SLOT=0
-_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	git-r3	562b380fc59ae6a8622171d0acb777d1	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	b5f01473006ccc2cd78bc3dab20fced4	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	git-r3	562b380fc59ae6a8622171d0acb777d1	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	b5f01473006ccc2cd78bc3dab20fced4	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=954c2a9b05e60f6a61eb27c1cc720117
diff --git a/metadata/md5-cache/sci-biology/sim4-20030921-r2 b/metadata/md5-cache/sci-biology/sim4-20030921-r2
index ad8831515263..bd676a73aef1 100644
--- a/metadata/md5-cache/sci-biology/sim4-20030921-r2
+++ b/metadata/md5-cache/sci-biology/sim4-20030921-r2
@@ -1,10 +1,10 @@
 DEFINED_PHASES=configure install
 DESCRIPTION=A program to align cDNA and genomic DNA
-EAPI=6
+EAPI=7
 HOMEPAGE=http://globin.cse.psu.edu/html/docs/sim4.html
 KEYWORDS=~amd64 ~ppc ~x86
 LICENSE=GPL-2
 SLOT=0
-SRC_URI=http://globin.cse.psu.edu/ftp/dist/sim4/sim4.tar.gz
+SRC_URI=mirror://gentoo/sim4.tar.gz -> sim4-20030921.tar.gz
 _eclasses_=multilib	1d91b03d42ab6308b5f4f6b598ed110e	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56
-_md5_=fca00baca723bafd7976eff8dccc5c26
+_md5_=41856fb45004e909c7899768a28a740e
diff --git a/metadata/md5-cache/sci-biology/stride-20011129-r1 b/metadata/md5-cache/sci-biology/stride-20011129-r1
index 54956c0c63ad..07070986e5f8 100644
--- a/metadata/md5-cache/sci-biology/stride-20011129-r1
+++ b/metadata/md5-cache/sci-biology/stride-20011129-r1
@@ -1,11 +1,11 @@
-DEFINED_PHASES=install prepare
+DEFINED_PHASES=configure install
 DESCRIPTION=Protein secondary structure assignment from atomic coordinates
-EAPI=5
+EAPI=7
 HOMEPAGE=http://webclu.bio.wzw.tum.de/stride/
 KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux ~x86-macos
 LICENSE=STRIDE
 RESTRICT=mirror bindist
 SLOT=0
-SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/stride.tar.gz https://dev.gentoo.org/~jlec/distfiles/stride-20060723-update.patch.bz2
-_eclasses_=desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=d73db26f06440dc2c2a1e25befe5d490
+SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/stride.tar.gz -> stride-20011129.tar.gz https://dev.gentoo.org/~jlec/distfiles/stride-20060723-update.patch.bz2
+_eclasses_=multilib	1d91b03d42ab6308b5f4f6b598ed110e	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56
+_md5_=897f9fd1d73b5a7779f29a7ca161cb75
diff --git a/metadata/md5-cache/sci-biology/trnascan-se-1.31 b/metadata/md5-cache/sci-biology/trnascan-se-1.31
index f1db88130fd4..9cff44f7923f 100644
--- a/metadata/md5-cache/sci-biology/trnascan-se-1.31
+++ b/metadata/md5-cache/sci-biology/trnascan-se-1.31
@@ -6,5 +6,5 @@ KEYWORDS=amd64 x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> trnascan-se-1.31.tar.gz
-_eclasses_=multilib	1d91b03d42ab6308b5f4f6b598ed110e	perl-functions	f2e3420aed32cf1abe33b4129b842636	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56
+_eclasses_=multilib	1d91b03d42ab6308b5f4f6b598ed110e	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56
 _md5_=3f4bcdf31fe276f90a95e2f4b311deae
diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40 b/metadata/md5-cache/sci-biology/uchime-4.2.40
index 8255520b1734..9d985fe8748c 100644
--- a/metadata/md5-cache/sci-biology/uchime-4.2.40
+++ b/metadata/md5-cache/sci-biology/uchime-4.2.40
@@ -8,5 +8,5 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
 LICENSE=public-domain
 SLOT=0
 SRC_URI=http://drive5.com/uchime/uchime4.2.40_src.tar.gz
-_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=cmake-utils	91d6ef31dc426240577497cacbf2508c	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=6adcbb8c658bdc3c40f797c61f5c58b0
diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.14 b/metadata/md5-cache/sci-biology/vcftools-0.1.14
index eaa3fe0b12a6..481e0471b94a 100644
--- a/metadata/md5-cache/sci-biology/vcftools-0.1.14
+++ b/metadata/md5-cache/sci-biology/vcftools-0.1.14
@@ -9,5 +9,5 @@ LICENSE=LGPL-3
 RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack )
 SLOT=0
 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz
-_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	perl-functions	f2e3420aed32cf1abe33b4129b842636	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	7ba73aee7fe4462b3a745e3645ab92ca	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	2729691420b6deeda2a90b1f1183fb55	multilib	1d91b03d42ab6308b5f4f6b598ed110e	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=82adffd84f2a93745e683b498b79fbe8
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
index 62e9d8ffeed8..225f54f6255c 100644
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
+++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
@@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? (
 REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
 SLOT=0
 SRC_URI=http://www.tbi.univie.ac.at/~ronny/RNA/ViennaRNA-2.1.1.tar.gz
-_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	autotools-utils	696393cddf6200db17a31641f597b403	desktop	b1d22ac8bdd4679ab79c71aca235009d	distutils-r1	9838160d624a44b2d56d1266a69fd473	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	f2e3420aed32cf1abe33b4129b842636	perl-module	71c828c354a4cddced2641dda2695de5	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	autotools-utils	696393cddf6200db17a31641f597b403	desktop	b1d22ac8bdd4679ab79c71aca235009d	distutils-r1	9838160d624a44b2d56d1266a69fd473	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	20c90ae7e826995a597683580cdfcdcb	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=1e58c830b49ced05ae9960fcc2dead13
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
index d5fe91b03ced..5eaec4676cd1 100644
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
+++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
@@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? (
 REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
 SLOT=0
 SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz
-_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	autotools-utils	696393cddf6200db17a31641f597b403	desktop	b1d22ac8bdd4679ab79c71aca235009d	distutils-r1	9838160d624a44b2d56d1266a69fd473	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	f2e3420aed32cf1abe33b4129b842636	perl-module	71c828c354a4cddced2641dda2695de5	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	14d00d009167652b1fa363e55effe213
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	autotools-utils	696393cddf6200db17a31641f597b403	desktop	b1d22ac8bdd4679ab79c71aca235009d	distutils-r1	9838160d624a44b2d56d1266a69fd473	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	2729691420b6deeda2a90b1f1183fb55	multibuild	40fe59465edacd730c644ec2bc197809	multilib	1d91b03d42ab6308b5f4f6b598ed110e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	20c90ae7e826995a597683580cdfcdcb	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	08e17157a6807add7db1f8d01e7e391f	toolchain-funcs	a3a237ef6c0c58546bf23b2c382f9e56	unpacker	3cd8bad0d31e525cd26be1bfa4e61631	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=b2a6486af275e75c6365ab7eeba1e0bd