gentoo resync : 30.09.2020

5 files changed, 7 insertions, 19 deletions

diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index beb1b1472a31..0cdcda66495b 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.1 b/metadata/md5-cache/sci-biology/bamtools-2.5.1
index 39cc9cd45f3f..dd2efa7ee0c7 100644
--- a/metadata/md5-cache/sci-biology/bamtools-2.5.1
+++ b/metadata/md5-cache/sci-biology/bamtools-2.5.1
@@ -9,5 +9,5 @@ LICENSE=MIT
 RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
 SLOT=0/2.5.1
 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.1.tar.gz -> bamtools-2.5.1.tar.gz
-_eclasses_=cmake	9f6da23aab151395c55f018fb13a11b2	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake	ac7cb516f6a288b6a82bc0649ce49878	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=a2299dc6ca850c1c25582656d7586681
diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999
index f7a2c3580007..445061016c75 100644
--- a/metadata/md5-cache/sci-biology/bamtools-9999
+++ b/metadata/md5-cache/sci-biology/bamtools-9999
@@ -8,5 +8,5 @@ LICENSE=MIT
 PROPERTIES=live
 RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
 SLOT=0/9999
-_eclasses_=cmake	9f6da23aab151395c55f018fb13a11b2	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	git-r3	3e7ec3d6619213460c85e2aa48398441	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake	ac7cb516f6a288b6a82bc0649ce49878	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	git-r3	3e7ec3d6619213460c85e2aa48398441	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=a2299dc6ca850c1c25582656d7586681
diff --git a/metadata/md5-cache/sci-biology/bwa-0.7.16a b/metadata/md5-cache/sci-biology/bwa-0.7.17
index 37a9ad4d0c4d..0023fbac6b0f 100644
--- a/metadata/md5-cache/sci-biology/bwa-0.7.16a
+++ b/metadata/md5-cache/sci-biology/bwa-0.7.17
@@ -1,11 +1,12 @@
 DEFINED_PHASES=configure install
+DEPEND=sys-libs/zlib
 DESCRIPTION=Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner
 EAPI=7
-HOMEPAGE=https://bio-bwa.sourceforge.net/
+HOMEPAGE=https://github.com/lh3/bwa/
 KEYWORDS=~amd64 ~x86 ~x64-macos
 LICENSE=GPL-3
-RDEPEND=dev-lang/perl
+RDEPEND=sys-libs/zlib dev-lang/perl
 SLOT=0
-SRC_URI=mirror://sourceforge/bio-bwa/bwa-0.7.16a.tar.bz2
+SRC_URI=https://github.com/lh3/bwa/archive/v0.7.17.tar.gz -> bwa-0.7.17.tar.gz
 _eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
-_md5_=6b21049857f301168f361c45510f8256
+_md5_=620c3569e8293303737f7844385c7e82
diff --git a/metadata/md5-cache/sci-biology/seaview-4.3.5 b/metadata/md5-cache/sci-biology/seaview-4.3.5
deleted file mode 100644
index bef00e62e2eb..000000000000
--- a/metadata/md5-cache/sci-biology/seaview-4.3.5
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=install prepare
-DEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) virtual/pkgconfig
-DESCRIPTION=A graphical multiple sequence alignment editor
-EAPI=5
-HOMEPAGE=http://pbil.univ-lyon1.fr/software/seaview.html
-IUSE=+xft
-KEYWORDS=amd64 x86
-LICENSE=public-domain
-RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) sci-biology/clustalw || ( sci-libs/libmuscle sci-biology/muscle ) sci-biology/phyml
-SLOT=0
-SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.3.5.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=38cc02682d853c813df2b6e81cbb51c5