gentoo resync : 15.09.2018

author: V3n3RiX <venerix@redcorelinux.org> 2018-09-15 17:37:09 +0100
committer: V3n3RiX <venerix@redcorelinux.org> 2018-09-15 17:37:09 +0100
commit: 586819755b4dbfdffdc8a725ab7c0f86095b8489 (patch)
tree: d6790c838cfe9607c996e4913fdf11bad5fdd528 /metadata/md5-cache/sci-biology
parent: 3f71901f8c228f4de570abed1831ce3ee425343e (diff)
53 files changed, 108 insertions, 108 deletions
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 9fa97404317f..6b5aabe187bb 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.2-r1 b/metadata/md5-cache/sci-biology/abyss-2.0.2-r1
index 8a1090f7759e..f92c64af3a46 100644
--- a/metadata/md5-cache/sci-biology/abyss-2.0.2-r1
+++ b/metadata/md5-cache/sci-biology/abyss-2.0.2-r1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure prepare pretend setup
-DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc dev-haskell/mmap ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc dev-haskell/mmap ) >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
 EAPI=6
 HOMEPAGE=http://www.bcgsc.ca/platform/bioinfo/software/abyss/
@@ -9,5 +9,5 @@ LICENSE=abyss
 RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi )
 SLOT=0
 SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.2.tar.gz -> abyss-2.0.2.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=3b173739bd4e2f9d61a49918b3b8bc05
diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.3 b/metadata/md5-cache/sci-biology/abyss-2.0.3
index 693309c839c9..9ff8d8330f98 100644
--- a/metadata/md5-cache/sci-biology/abyss-2.0.3
+++ b/metadata/md5-cache/sci-biology/abyss-2.0.3
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure prepare pretend setup
-DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
 EAPI=6
 HOMEPAGE=http://www.bcgsc.ca/platform/bioinfo/software/abyss/
@@ -9,5 +9,5 @@ LICENSE=abyss
 RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi )
 SLOT=0
 SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.3.tar.gz -> abyss-2.0.3.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=4c70cbdf60d5dc2d564272b103f2b469
diff --git a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 b/metadata/md5-cache/sci-biology/allpathslg-52488-r2
index 5b967ab6cf45..6a82ead516f6 100644
--- a/metadata/md5-cache/sci-biology/allpathslg-52488-r2
+++ b/metadata/md5-cache/sci-biology/allpathslg-52488-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare pretend setup
-DEPEND=!sci-biology/allpaths !sci-biology/vaal dev-libs/boost:= >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=!sci-biology/allpaths !sci-biology/vaal dev-libs/boost:= >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=De novo assembly of whole-genome shotgun microreads
 EAPI=6
 HOMEPAGE=http://www.broadinstitute.org/science/programs/genome-biology/crd
@@ -8,5 +8,5 @@ LICENSE=MIT
 RDEPEND=!sci-biology/allpaths !sci-biology/vaal
 SLOT=0
 SRC_URI=ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz https://dev.gentoo.org/~mgorny/dist/allpathslg-52488-patchset.tar.bz2
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	0081a71a261724730ec4c248494f044d	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=8c8bda5ab2704db1e969660ebe5882c1
diff --git a/metadata/md5-cache/sci-biology/amos-3.1.0-r4 b/metadata/md5-cache/sci-biology/amos-3.1.0-r4
index b0515c75a415..863e85d0ea93 100644
--- a/metadata/md5-cache/sci-biology/amos-3.1.0-r4
+++ b/metadata/md5-cache/sci-biology/amos-3.1.0-r4
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare setup
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A Modular, Open-Source whole genome assembler
 EAPI=6
 HOMEPAGE=http://amos.sourceforge.net/
@@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/
 REQUIRED_USE=python_targets_python2_7
 SLOT=0
 SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	0081a71a261724730ec4c248494f044d	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-single-r1	3a0fc81f484bfdbd9c2b7448015a36e4	python-utils-r1	12114a2a9aab35b93efc037a196b3234	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-single-r1	3a0fc81f484bfdbd9c2b7448015a36e4	python-utils-r1	12114a2a9aab35b93efc037a196b3234	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=aec6d1c76d5ea621c66e803800e2b3c4
diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a
index 0c7a6a22cf6a..bc44362fdcb8 100644
--- a/metadata/md5-cache/sci-biology/bfast-0.7.0a
+++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare test
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Blat-like Fast Accurate Search Tool
 EAPI=5
 HOMEPAGE=https://sourceforge.net/projects/bfast/
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=dev-perl/XML-Simple
 SLOT=0
 SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	autotools-utils	696393cddf6200db17a31641f597b403	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	0081a71a261724730ec4c248494f044d	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	autotools-utils	696393cddf6200db17a31641f597b403	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=abc362f15c5107d96bedfb879ea0375f
diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 b/metadata/md5-cache/sci-biology/biogrep-1.0-r2
index bf62376ea950..e024ab7e2e29 100644
--- a/metadata/md5-cache/sci-biology/biogrep-1.0-r2
+++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Multithreaded tool for matching large sets of patterns against biosequence DBs
 EAPI=6
 HOMEPAGE=http://stephanopoulos.openwetware.org/BIOGREP.html
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf )
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=9731727dae2a2514bcaa486b0059272e
diff --git a/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1 b/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1
index 85a16d47bbfe..603cce5c21c0 100644
--- a/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1
+++ b/metadata/md5-cache/sci-biology/blossoc-1.4.0-r1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=sci-libs/gsl:= dev-libs/boost:= sci-biology/snpfile >=sys-devel/autoconf-archive-2016.09.16 virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sci-libs/gsl:= dev-libs/boost:= sci-biology/snpfile >=sys-devel/autoconf-archive-2016.09.16 virtual/pkgconfig >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A linkage disequilibrium association mapping tool
 EAPI=6
 HOMEPAGE=http://www.daimi.au.dk/~mailund/Blossoc/
@@ -8,5 +8,5 @@ LICENSE=GPL-3
 RDEPEND=sci-libs/gsl:= dev-libs/boost:= sci-biology/snpfile
 SLOT=0
 SRC_URI=http://www.daimi.au.dk/~mailund/Blossoc/download/blossoc-1.4.0.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=2fe1853c7621b633d2ee794ef3176e3f
diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
index 494a6b1fd4b3..ec73d3191871 100644
--- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
+++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=dev-libs/argtable >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-libs/argtable >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Scalable multiple alignment of protein sequences
 EAPI=6
 HOMEPAGE=http://www.clustal.org/omega/
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=dev-libs/argtable
 SLOT=0
 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=9ade45d2e283bc5fcc7eef16725e18ae
diff --git a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2
index 069938748454..36ebee931ace 100644
--- a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2
+++ b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure prepare setup
-DEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.62.0:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-cpp/eigen:3 virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.62.0:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-cpp/eigen:3 virtual/pkgconfig >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Transcript assembly and differential expression/regulation for RNA-Seq
 EAPI=6
 HOMEPAGE=http://cufflinks.cbcb.umd.edu/
@@ -10,5 +10,5 @@ RDEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.62.0:= python_targets
 REQUIRED_USE=python_targets_python2_7
 SLOT=0
 SRC_URI=http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.2.1.tar.gz
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 _md5_=8e0065b0f455fa63e987f6182ed61fa1
diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
index 1a29578b6a81..031393f3cdb9 100644
--- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of Applications from the CBS group
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz
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+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	emboss-r2	050733de1639b3cbb59ff1fac738d91c	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=4166ba28131fdf70907b31300aa4c08b
diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
index 9f8be1c422c6..6066ccbc51fc 100644
--- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of Clustal Omega - Multiple Sequence Alignment
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz
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+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	emboss-r2	050733de1639b3cbb59ff1fac738d91c	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=ef491b452e56be12961f62b16961f4f1
diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
index 961ff0cb17c3..047158ecf52c 100644
--- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein domain analysis add-on package
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz
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+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	emboss-r2	050733de1639b3cbb59ff1fac738d91c	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=bfee4f5b2b2adadb41de2eb02d4dcbc0
diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
index 3a59940048fe..c23c8157a040 100644
--- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein domain alignment add-on package
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz
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 _md5_=9f8b2caa273f4ae3b0463e6de6782660
diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
index ff50382c2b38..cd46cc6965fd 100644
--- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein domain search add-on package
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz
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 _md5_=920906439fbc5278460201b23a615736
diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
index ed0ee478476d..99135bf3845f 100644
--- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
+++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of Simple menu of EMBOSS applications
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz
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+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	emboss-r2	050733de1639b3cbb59ff1fac738d91c	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=d82c7c44ec76fa5d6165769a73e5df9a
diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
index 0be22e494dde..26e59a1012a2 100644
--- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz
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+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	emboss-r2	050733de1639b3cbb59ff1fac738d91c	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=1b156bed7ea031aeb5464836dd987f18
diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
index f63e77868bf3..16aa5dd03eba 100644
--- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
+++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of HMMER wrapper - sequence analysis with profile HMMs
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz
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 _md5_=83d02ae22d4e1864669639d9289cd112
diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
index 50cbfa19b0df..02ff7ca4a85b 100644
--- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of InterProScan motif detection add-on package
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz
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 _md5_=73b0c29964ea3506d18ef6b6c8df70e1
diff --git a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 b/metadata/md5-cache/sci-biology/embassy-meme-4.7.660
index 189d4b6b0b4e..76d230ad73c2 100644
--- a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660
+++ b/metadata/md5-cache/sci-biology/embassy-meme-4.7.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sci-biology/meme dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MEME-4.7.660.tar.gz -> embassy-meme-4.7.660.tar.gz
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 _md5_=b18db6d7a2159272c7b69d34a14dc9b5
diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
index 49a6a47d4624..c71b52acf605 100644
--- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of MSE - Multiple Sequence Screen Editor
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz
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 _md5_=84df94b7c4b0f044de45cef524cbf453
diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
index 4758545f77ae..c159aa8b2747 100644
--- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
+++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of The Phylogeny Inference Package
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 freedist
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz
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 _md5_=00620d36fbf4790dc2ecfb240ba9816c
diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
index 875ba61f7457..3b6c2526f25a 100644
--- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein signature add-on package
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz
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 _md5_=4cb685046b5a39b624eb3467b815c2c4
diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
index 15cd2edbebec..2ad0000bd7e5 100644
--- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein structure add-on package
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz
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 _md5_=634d624be78f958ed7fca02e7dc43bd4
diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
index 8679783206fc..729335fefe3a 100644
--- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of Transmembrane protein display
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	desktop	b1d22ac8bdd4679ab79c71aca235009d	emboss-r2	050733de1639b3cbb59ff1fac738d91c	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	0081a71a261724730ec4c248494f044d	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	emboss-r2	050733de1639b3cbb59ff1fac738d91c	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=e50220ee11093554b589c1f9f53e7c09
diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
index 7d49f4ad1097..cae6f93ab780 100644
--- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
+++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 DESCRIPTION=EMBOSS integrated version of Vienna RNA package - RNA folding
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	desktop	b1d22ac8bdd4679ab79c71aca235009d	emboss-r2	050733de1639b3cbb59ff1fac738d91c	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	0081a71a261724730ec4c248494f044d	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	emboss-r2	050733de1639b3cbb59ff1fac738d91c	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=d257de40bcdb33c0735daac8a5f15fda
diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
index 549b16858cb0..3b7472a5f08c 100644
--- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
+++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install postinst prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
 DESCRIPTION=The European Molecular Biology Open Software Suite - A sequence analysis package
 EAPI=6
 HOMEPAGE=http://emboss.sourceforge.net/
@@ -10,5 +10,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci
 RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	desktop	b1d22ac8bdd4679ab79c71aca235009d	emboss-r2	050733de1639b3cbb59ff1fac738d91c	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	0081a71a261724730ec4c248494f044d	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	readme.gentoo-r1	22ae82e140bdd95d17a34fd5fd733190	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	emboss-r2	050733de1639b3cbb59ff1fac738d91c	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	readme.gentoo-r1	22ae82e140bdd95d17a34fd5fd733190	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=99a47266a2a8f2fd0a874111491146e2
diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d b/metadata/md5-cache/sci-biology/eugene-4.1d
index fdfb087dc839..f63cbe9108c4 100644
--- a/metadata/md5-cache/sci-biology/eugene-4.1d
+++ b/metadata/md5-cache/sci-biology/eugene-4.1d
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=media-libs/gd[png] media-libs/libpng:0= >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=media-libs/gd[png] media-libs/libpng:0= >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Prokaryotic and Eukaryotic gene predictor
 EAPI=6
 HOMEPAGE=http://eugene.toulouse.inra.fr/
@@ -9,5 +9,5 @@ RDEPEND=media-libs/gd[png] media-libs/libpng:0=
 RESTRICT=test
 SLOT=0
 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=683d1e7f9daeda6cd20b92117330ea81
diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
index d2abcec90d13..bfbf4d748950 100644
--- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
+++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=dev-libs/glib:2 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-libs/glib:2 >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Generic tool for pairwise sequence comparison
 EAPI=6
 HOMEPAGE=https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/glib:2
 REQUIRED_USE=test? ( utils )
 SLOT=0
 SRC_URI=http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=2efd53d13e6f08e4144477038f41e4af
diff --git a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
index ee02e12c1510..1f3e8b13302e 100644
--- a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
+++ b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=sci-biology/libgtextutils virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sci-biology/libgtextutils virtual/pkgconfig >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Tools for Short Read FASTA/FASTQ file processing
 EAPI=6
 HOMEPAGE=http://hannonlab.cshl.edu/fastx_toolkit
@@ -8,5 +8,5 @@ LICENSE=AGPL-3
 RDEPEND=dev-perl/PerlIO-gzip dev-perl/GDGraph sci-biology/libgtextutils:= sci-visualization/gnuplot
 SLOT=0
 SRC_URI=https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=c3bb0edd6b01a31019cf5fd59e22122a
diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.4.4-r3 b/metadata/md5-cache/sci-biology/foldingathome-7.5.1
index 582cf38b6c58..2ff2b4ba0671 100644
--- a/metadata/md5-cache/sci-biology/foldingathome-7.4.4-r3
+++ b/metadata/md5-cache/sci-biology/foldingathome-7.5.1
@@ -1,13 +1,13 @@
 DEFINED_PHASES=config install postinst postrm setup
-DEPEND=virtual/pkgconfig
+DEPEND=dev-util/patchelf virtual/pkgconfig
 DESCRIPTION=Folding@Home is a distributed computing project for protein folding
 EAPI=6
-HOMEPAGE=http://folding.stanford.edu/FAQ-SMP.html
-KEYWORDS=~amd64 ~x86
+HOMEPAGE=https://foldingathome.org/
+KEYWORDS=~amd64
 LICENSE=FAH-EULA-2014 FAH-special-permission
-RDEPEND=app-arch/bzip2 sys-devel/gcc sys-libs/glibc sys-libs/zlib
+RDEPEND=app-arch/bzip2 =dev-libs/openssl-1.0*:* sys-devel/gcc sys-libs/glibc sys-libs/zlib
 RESTRICT=mirror bindist strip
 SLOT=0
-SRC_URI=x86? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.5-32bit/v7.4/fahclient_7.4.4-32bit-release.tar.bz2 ) amd64? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.3-64bit/v7.4/fahclient_7.4.4-64bit-release.tar.bz2 )
+SRC_URI=https://download.foldingathome.org/releases/public/release/fahclient/centos-6.7-64bit/v7.5/fahclient_7.5.1-64bit-release.tar.bz2
 _eclasses_=estack	43ddf5aaffa7a8d0482df54d25a66a1f	multilib	97f470f374f2e94ccab04a2fb21d811e	systemd	47c677ae1d7b69031f11f630ac09f0d1	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	user	8bc2845510e2109af75e3eeac607ec81	versionator	2352c3fc97241f6a02042773c8287748
-_md5_=88985dd852d9319fa9869bece9f35a26
+_md5_=5969e756bd7905ba14bb72b83f427ee8
diff --git a/metadata/md5-cache/sci-biology/gibbs-3.1 b/metadata/md5-cache/sci-biology/gibbs-3.1
index cc97c0885b20..aefcf4ad0c02 100644
--- a/metadata/md5-cache/sci-biology/gibbs-3.1
+++ b/metadata/md5-cache/sci-biology/gibbs-3.1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install postinst prepare test
-DEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Identify motifs, conserved regions, in DNA or protein sequences
 EAPI=4
 HOMEPAGE=http://bayesweb.wadsworth.org/gibbs/gibbs.html
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 )
 SLOT=0
 SRC_URI=mirror://gentoo/gibbs-3.1.tar.gz
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+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	autotools-utils	696393cddf6200db17a31641f597b403	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=e28918ff8ca46c8b8254e4e36f8d0bcf
diff --git a/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3 b/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3
index 615d785d957e..c246ef09938d 100644
--- a/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3
+++ b/metadata/md5-cache/sci-biology/goby-cpp-1.9.7.3
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A DNA sequencing data management framework - C/C++ API
 EAPI=4
 HOMEPAGE=http://campagnelab.org/software/goby/
@@ -8,5 +8,5 @@ LICENSE=GPL-3
 RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12
 SLOT=0
 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-cpp.zip
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
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 _md5_=62b1fc794a90a87e0f80ab795108ee3c
diff --git a/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1 b/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1
index d4512ce3fc00..9b8b5ef33c34 100644
--- a/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1
+++ b/metadata/md5-cache/sci-biology/goby-cpp-1.9.8.1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A DNA sequencing data management framework - C/C++ API
 EAPI=4
 HOMEPAGE=http://campagnelab.org/software/goby/
@@ -8,5 +8,5 @@ LICENSE=GPL-3
 RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12
 SLOT=0
 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-cpp.zip
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=2599766d541e65f4acfb94c4fa4e974e
diff --git a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1
index 5aa9bd19f638..b304b1bc1e34 100644
--- a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1
+++ b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare test
-DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A DNA sequencing data management framework - C/C++ API
 EAPI=5
 HOMEPAGE=http://campagnelab.org/software/goby/
@@ -9,5 +9,5 @@ LICENSE=GPL-3
 RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12
 SLOT=0
 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_2.0.1/goby_2.0.1-cpp.zip https://dev.gentoo.org/~mgorny/dist/goby-cpp-2.0.1-files.tar.bz2
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 _md5_=8282c100b202c470aedc98e37f6151ff
diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r1 b/metadata/md5-cache/sci-biology/iedera-1.05-r1
index de3655fd3614..6063bdc47e8f 100644
--- a/metadata/md5-cache/sci-biology/iedera-1.05-r1
+++ b/metadata/md5-cache/sci-biology/iedera-1.05-r1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A subset seed design tool for DNA sequence alignment
 EAPI=6
 HOMEPAGE=http://bioinfo.lifl.fr/yass/iedera.php
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=ce77e1e27bd52fed2fd2af52744d6288
diff --git a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
index 0620e0c00af6..16e2bc906ba9 100644
--- a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
+++ b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Gordon Text utils Library
 EAPI=6
 HOMEPAGE=http://hannonlab.cshl.edu/fastx_toolkit/
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=AGPL-3
 SLOT=0/0
 SRC_URI=http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=867c9b9e4eee26ad2a76ff6ff0594f52
diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 b/metadata/md5-cache/sci-biology/maq-0.7.1-r2
index f841640f9ed1..c15b3ee5c30f 100644
--- a/metadata/md5-cache/sci-biology/maq-0.7.1-r2
+++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=install prepare
-DEPEND=sys-libs/zlib >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sys-libs/zlib >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Mapping and Assembly with Qualities, mapping NGS reads to reference genomes
 EAPI=6
 HOMEPAGE=http://maq.sourceforge.net/
@@ -8,5 +8,5 @@ LICENSE=GPL-3
 RDEPEND=sys-libs/zlib
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=39ffb0025210075a8d7d7f6f81f8da56
diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
index cd1dfc0a3143..4cb1dcf0b94b 100644
--- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
+++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=media-libs/freeglut sys-libs/zlib >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=media-libs/freeglut sys-libs/zlib >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler
 EAPI=6
 HOMEPAGE=http://maq.sourceforge.net/
@@ -8,5 +8,5 @@ LICENSE=GPL-3
 RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz
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 _md5_=dee50558d10e75ff9e96f4c3f177c55f
diff --git a/metadata/md5-cache/sci-biology/mcl-08.312 b/metadata/md5-cache/sci-biology/mcl-08.312
index 99537fb58f52..64df3e9dabac 100644
--- a/metadata/md5-cache/sci-biology/mcl-08.312
+++ b/metadata/md5-cache/sci-biology/mcl-08.312
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare test
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A Markov Cluster Algorithm implementation
 EAPI=4
 HOMEPAGE=http://micans.org/mcl/
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://micans.org/mcl/src/mcl-08-312.tar.gz
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diff --git a/metadata/md5-cache/sci-biology/mcl-12.135 b/metadata/md5-cache/sci-biology/mcl-12.135
index 637f986ac0fc..e4b0ab0ada57 100644
--- a/metadata/md5-cache/sci-biology/mcl-12.135
+++ b/metadata/md5-cache/sci-biology/mcl-12.135
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare test
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A Markov Cluster Algorithm implementation
 EAPI=4
 HOMEPAGE=http://micans.org/mcl/
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://micans.org/mcl/src/mcl-12-135.tar.gz
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 _md5_=24cf3aad7375304f2721048d2f76b5f1
diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137
index 931b084f01d9..d9cf159a4f54 100644
--- a/metadata/md5-cache/sci-biology/mcl-14.137
+++ b/metadata/md5-cache/sci-biology/mcl-14.137
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure prepare
-DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A Markov Cluster Algorithm implementation
 EAPI=6
 HOMEPAGE=http://micans.org/mcl/
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=3429c68609b6c70e047d577379f68f97
diff --git a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 b/metadata/md5-cache/sci-biology/meme-4.11.2_p2
index 8da3cdc2763f..fbdf34a5d86a 100644
--- a/metadata/md5-cache/sci-biology/meme-4.11.2_p2
+++ b/metadata/md5-cache/sci-biology/meme-4.11.2_p2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare setup test
-DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi ) >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=The MEME/MAST system - Motif discovery and search
 EAPI=6
 HOMEPAGE=http://meme-suite.org/tools/meme
@@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/
 REQUIRED_USE=python_targets_python2_7
 SLOT=0
 SRC_URI=http://meme-suite.org/meme-software/4.11.2/meme_4.11.2.tar.gz
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+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	estack	43ddf5aaffa7a8d0482df54d25a66a1f	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	perl-functions	f2e3420aed32cf1abe33b4129b842636	python-single-r1	3a0fc81f484bfdbd9c2b7448015a36e4	python-utils-r1	12114a2a9aab35b93efc037a196b3234	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	versionator	2352c3fc97241f6a02042773c8287748
 _md5_=a4080439675628436c06de8db9f59c6e
diff --git a/metadata/md5-cache/sci-biology/mira-4.0.2 b/metadata/md5-cache/sci-biology/mira-4.0.2
index ddbf931bd391..4435077cad7f 100644
--- a/metadata/md5-cache/sci-biology/mira-4.0.2
+++ b/metadata/md5-cache/sci-biology/mira-4.0.2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install postinst prepare
-DEPEND=dev-libs/boost[threads] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-libs/boost[threads] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Illumina
 EAPI=6
 HOMEPAGE=http://www.chevreux.org/projects_mira.html
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=dev-libs/boost[threads] dev-util/google-perftools
 SLOT=0
 SRC_URI=https://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira-4.0.2.tar.bz2 mirror://sourceforge/mira-assembler/mira_3rdparty_06-07-2012.tar.bz2
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+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=4e9fc8a550640febbc0b71544c16618c
diff --git a/metadata/md5-cache/sci-biology/samtools-1.5 b/metadata/md5-cache/sci-biology/samtools-1.5
index cd71e43f75de..7c3a66dcccd3 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.5
+++ b/metadata/md5-cache/sci-biology/samtools-1.5
@@ -1,5 +1,5 @@
 DEFINED_PHASES=install prepare test
-DEPEND=dev-lang/perl =sci-libs/htslib-1.5* sys-libs/ncurses:0= sys-libs/zlib python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-lang/perl =sci-libs/htslib-1.5* sys-libs/ncurses:0= sys-libs/zlib python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] virtual/pkgconfig >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats
 EAPI=6
 HOMEPAGE=http://www.htslib.org/
@@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl =sci-libs/htslib-1.5* sys-libs/ncurses:0= sys-libs/zlib py
 REQUIRED_USE=|| ( python_targets_python2_7 )
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-1.5.tar.bz2
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+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multibuild	40fe59465edacd730c644ec2bc197809	multilib	97f470f374f2e94ccab04a2fb21d811e	python-r1	ce1cd23cfdc1848e8e32743efe34f299	python-utils-r1	12114a2a9aab35b93efc037a196b3234	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=8d92b4a814f62eab87bac2be22c2470c
diff --git a/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2 b/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2
index 944fcac9804f..6b2eb86b8e2f 100644
--- a/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2
+++ b/metadata/md5-cache/sci-biology/snpfile-2.0.1-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=dev-libs/boost:= >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-libs/boost:= >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A library and API for manipulating large SNP datasets
 EAPI=6
 HOMEPAGE=http://www.birc.au.dk/~mailund/SNPFile/
@@ -9,5 +9,5 @@ LICENSE=GPL-3
 RDEPEND=dev-libs/boost:=
 SLOT=0
 SRC_URI=http://www.birc.au.dk/~mailund/SNPFile/download/snpfile-2.0.1.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=7c64014825a157024d03614c037abcfc
diff --git a/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 b/metadata/md5-cache/sci-biology/tophat-2.1.1-r4
index 0129bf8e8dbd..5a9da4c5ce99 100644
--- a/metadata/md5-cache/sci-biology/tophat-2.1.1-r4
+++ b/metadata/md5-cache/sci-biology/tophat-2.1.1-r4
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install postinst prepare setup
-DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] dev-python/intervaltree[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-python/sortedcontainers[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] dev-python/intervaltree[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-python/sortedcontainers[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2
 EAPI=6
 HOMEPAGE=https://ccb.jhu.edu/software/tophat/
@@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/
 REQUIRED_USE=python_targets_python2_7
 SLOT=0
 SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz
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+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	desktop	b1d22ac8bdd4679ab79c71aca235009d	epatch	a1bf4756dba418a7238f3be0cb010c54	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	6e6c2737b59a4b982de6fb3ecefd87f8	flag-o-matic	55aaa148741116aa54ad0d80e361818e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	08f9e1d9ee0af8f5d9a7854efbcd8c0e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-single-r1	3a0fc81f484bfdbd9c2b7448015a36e4	python-utils-r1	12114a2a9aab35b93efc037a196b3234	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
 _md5_=efee8069c83c578acac8e57b429ad985
diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
index d76fef1c0323..f9b274dc5435 100644
--- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
+++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=x11-libs/wxGTK:3.0[X] >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=x11-libs/wxGTK:3.0[X] >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A phylogenetic tree viewer
 EAPI=5
 HOMEPAGE=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 RDEPEND=x11-libs/wxGTK:3.0[X]
 SLOT=0
 SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz
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 _md5_=ce129f3e61a849cfd3654e5a9fa4b17a
diff --git a/metadata/md5-cache/sci-biology/vaal-46233-r2 b/metadata/md5-cache/sci-biology/vaal-46233-r2
index ff8fe14d1b06..a724d66e621b 100644
--- a/metadata/md5-cache/sci-biology/vaal-46233-r2
+++ b/metadata/md5-cache/sci-biology/vaal-46233-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure prepare
-DEPEND=!sci-biology/allpaths !sci-biology/allpathslg dev-libs/boost >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=!sci-biology/allpaths !sci-biology/allpathslg dev-libs/boost >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Algorithm for detecting SNPs, indels, and other polymorphisms
 EAPI=6
 HOMEPAGE=http://www.broadinstitute.org/science/programs/genome-biology/crd/
@@ -9,5 +9,5 @@ LICENSE=Whitehead-MIT
 RDEPEND=!sci-biology/allpaths !sci-biology/allpathslg
 SLOT=0
 SRC_URI=ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/vaal-46233.tar.gz ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc https://dev.gentoo.org/~mgorny/dist/vaal-46233_remove-namespace-std.patch.bz2
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 _md5_=7ca22b906d6f7e7c4fe2f2f35eedfb6b
diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.14 b/metadata/md5-cache/sci-biology/vcftools-0.1.14
index c519903e6f86..7d20fa0f6236 100644
--- a/metadata/md5-cache/sci-biology/vcftools-0.1.14
+++ b/metadata/md5-cache/sci-biology/vcftools-0.1.14
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure prepare
-DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Tools for working with VCF (Variant Call Format) files
 EAPI=6
 HOMEPAGE=http://vcftools.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-3
 RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack )
 SLOT=0
 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz
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 _md5_=c40169dc993f3444a3e2f41ad69a920d
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
index 42829283aa95..7d3144fa83cb 100644
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
+++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)]
+DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)]
 DESCRIPTION=RNA secondary structure prediction and comparison
 EAPI=5
 HOMEPAGE=http://www.tbi.univie.ac.at/~ivo/RNA/
@@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? (
 REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
 SLOT=0
 SRC_URI=http://www.tbi.univie.ac.at/~ronny/RNA/ViennaRNA-2.1.1.tar.gz
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 _md5_=1e58c830b49ced05ae9960fcc2dead13
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
index cf6a11ad772f..909d53945e8e 100644
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
+++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)]
+DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)]
 DESCRIPTION=RNA secondary structure prediction and comparison
 EAPI=5
 HOMEPAGE=http://www.tbi.univie.ac.at/~ivo/RNA/
@@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? (
 REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
 SLOT=0
 SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz
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 _md5_=b2a6486af275e75c6365ab7eeba1e0bd
diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r2 b/metadata/md5-cache/sci-biology/yass-1.14-r2
index a5592316c328..7f936c11b15b 100644
--- a/metadata/md5-cache/sci-biology/yass-1.14-r2
+++ b/metadata/md5-cache/sci-biology/yass-1.14-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure prepare
-DEPEND=dmalloc? ( dev-libs/dmalloc ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dmalloc? ( dev-libs/dmalloc ) >=app-portage/elt-patches-20170815 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Genomic similarity search with multiple transition constrained spaced seeds
 EAPI=6
 HOMEPAGE=http://bioinfo.lifl.fr/yass/
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=dmalloc? ( dev-libs/dmalloc )
 SLOT=0
 SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz
-_eclasses_=autotools	d0e5375d47f4c809f406eb892e531513	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
+_eclasses_=autotools	1bf086cdd7356f5c9a4acd9727bd2065	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	e4a9360924c5ce9f52e61342cde58512
 _md5_=3a4ba9b4e7b8efec51cfc79d261fefd3
author	V3n3RiX <venerix@redcorelinux.org>	2018-09-15 17:37:09 +0100
committer	V3n3RiX <venerix@redcorelinux.org>	2018-09-15 17:37:09 +0100
commit	586819755b4dbfdffdc8a725ab7c0f86095b8489 (patch)
tree	d6790c838cfe9607c996e4913fdf11bad5fdd528 /metadata/md5-cache/sci-biology
parent	3f71901f8c228f4de570abed1831ce3ee425343e (diff)